Repositories list

• broke-west-fish-dwcav2

  Public
  Script to transform BROKE-West fish dataset into DwCAv2 and to explore DwCAv2

  R

  •

  MIT License

  •1•1•0•0•Updated Feb 21, 2025Feb 21, 2025

• rename-photos-ocr

  Public
  Automates the renaming of specimen photos by extracting labels using Optical Character Recognition (OCR)

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

• TANGO_TOPP

  Public
  R

  •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• cs-phoc_dwcav2

  Public
  Mapping CS-PHOC dataset as a Survey use case of the new data model to DwCAv2

  R

  •

  MIT License

  •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

• antarxxvii-leg2

  Public
  Repo to manage data transformation script and output for antarxxvii-leg2 dataset

  R

  •

  The Unlicense

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• ASO-essential_variables

  Public
  0•5•1•0•Updated Sep 13, 2024Sep 13, 2024

• humboldt-for-eco-survey-data

  Public
  Mapping ecological inventory dataset to Humboldt extension

  HTML

  •0•0•0•0•Updated May 14, 2024May 14, 2024

• Shiny-DistAnt

  Public
  Create a Shiny app for the DistAnt repository (from S3 to website visualisation)

  R

  •0•0•0•0•Updated Apr 12, 2024Apr 12, 2024

• scar-network-datasets

  Public
  Workflow for exploring datasets tagged with SCAR network in GBIF

  Python

  •3•0•144•0•Updated Mar 5, 2024Mar 5, 2024

• data-publication

  Public
  Open biodiversity data publication by biodiversity.aq

  open-datagbifobis

  Creative Commons Attribution 4.0 International

  •0•0•1•0•Updated Feb 6, 2024Feb 6, 2024

• ANTABIF-AADC-datasets

  Public
  Check duplicated datasets from AADC IPT, AADC DiGIR and ANTABIF IPT based on dataset title

  Python

  •0•0•0•0•Updated Jan 12, 2024Jan 12, 2024

• BASO

  Public
  Repository for the pdf of Biogeographic Atlas of the Southern Ocean

  0•0•0•0•Updated Oct 17, 2023Oct 17, 2023

• bas_jr15005_molluscs

  Public
  Script to calculate trawl (linestring) midpoint and coordinateUncertaintyInMeters for the data paper

  R

  •0•0•0•0•Updated Jul 28, 2023Jul 28, 2023

• SCAR2022_structuring-and-managing-biological-data-workshop

  Public
  SCAR 2022 Open Science Conference Satellite Meeting - Structuring and Managing Biological Data

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated May 31, 2023May 31, 2023

• myctobase

  Public
  Script used to transform the dataset into Darwin Core format

  HTML

  •0•0•0•0•Updated Jul 19, 2022Jul 19, 2022

• ANTARXXVII-Leg1

  Public
  Python

  •

  Creative Commons Zero v1.0 Universal

  •1•0•0•0•Updated Jun 22, 2022Jun 22, 2022

• antarctic_subantarctic_asteroidea_isotopes

  Public
  Script used to transform the dataset into Darwin Core format

  HTML

  •0•0•0•0•Updated May 10, 2022May 10, 2022

• proteker2016-event

  Public
  Script used to transform the dataset into Darwin Core format

  HTML

  •1•0•0•0•Updated Apr 19, 2022Apr 19, 2022

• data-mgt-templates

  Public
  Templates to manage biodiversity data from the field to research

  Creative Commons Zero v1.0 Universal

  •0•3•0•0•Updated Apr 11, 2022Apr 11, 2022

• bas-pycnogonida_2007-2019

  Public
  Repository of code to populate certain fields with script for dataset bas-pycnogonida_2007-2019

  R

  •0•0•0•0•Updated Dec 9, 2021Dec 9, 2021

• OmicsMetaData

  Public
  an R package to standardize and format omics metadata

  R

  •0•1•0•0•Updated Nov 8, 2021Nov 8, 2021

• biodiversity-aq-portal

  Public archive
  Source code of biodiversity.aq

  HTML

  •0•0•0•0•Updated Jul 15, 2021Jul 15, 2021

• data.biodiversity.aq

  Public
  Source code of data.biodiversity.aq

  Python

  •0•0•0•0•Updated Jul 15, 2021Jul 15, 2021

• BiodiversityData_QC_standardWorkflow

  Public
  The standard workflow for data Quality Control (QC)

  0•0•0•0•Updated Jun 22, 2021Jun 22, 2021

• MicrobeDataTools

  Public
  an R package to quality control, format, archive and download microbial 'omics data

  R

  •0•0•0•0•Updated Oct 29, 2020Oct 29, 2020

• RAATD

  Public
  The Retrospective Analysis of Antarctic Tracking (Standardised) Data from the Scientific Committee on Antarctic Research

  R

  •0•0•1•0•Updated Sep 28, 2020Sep 28, 2020

• PolaRRtools

  Public
  an R package to download, manipulate and quality control sequence- and metadata

  0•0•0•0•Updated Mar 12, 2020Mar 12, 2020

• POLAAAR

  Public
  R

  •0•0•0•0•Updated Mar 3, 2020Mar 3, 2020

• EGABIcourse19

  Public
  10•3•4•1•Updated Oct 22, 2019Oct 22, 2019

• mARS_Tutorials

  Public
  Tutorials and Standard Operating Procedures (SOPs) on data processing and submission to mARS

  0•0•0•0•Updated Oct 10, 2019Oct 10, 2019