Repositories list

• BimberLabKeyModules

  Public
  This holds LabKey Server modules used by the Bimber Lab that are private or unlikely to be of general interest

  CSS

  •3•0•1•1•Updated Feb 5, 2025Feb 5, 2025

• CellMembrane

  Public
  An R package with wrappers and pipelines for single cell RNA-seq analysis

  R

  •3•11•4•4•Updated Feb 5, 2025Feb 5, 2025

• LabDevKitModules

  Public
  Contains the LDK LabKey module, which has lower-level code and is a dependency of several other modules

  JavaScript

  •2•0•0•0•Updated Feb 3, 2025Feb 3, 2025

• Rdiscvr

  Public
  This in an R package that provides helper functions to query data in LabKey/DISCVR modules.

  R

  •

  Apache License 2.0

  •1•0•0•0•Updated Feb 3, 2025Feb 3, 2025

• docker-base

  Public
  Designed to build a base docker image for R packages

  Dockerfile

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

• DevOps

  Public
  Tools to manage software and repositories for the Bimber Lab

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

• mcc-website

  Public
  This project holds the content for the MCC public website

  HTML

  •0•0•0•0•Updated Oct 8, 2024Oct 8, 2024

• VariantAnnotation

  Public
  A set of scripts to build custom funcotator-compatible data sources

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 14, 2023Dec 14, 2023

• WorkbookSync

  Public
  Python

  •0•0•0•0•Updated Feb 7, 2023Feb 7, 2023

• ShinySDA

  Public
  Shiny tool to load and browse SDA objects

  R

  •2•0•0•0•Updated Jan 29, 2023Jan 29, 2023

• OOSAP

  Public
  OHSU-ONPRC Single-cell Analysis Package

  rr-packagesingle-cell+ 3ohsusingle-cell-rna-seqonprc

  R

  •2•4•0•1•Updated Jan 14, 2021Jan 14, 2021

• library

  Public
  Reference V, D, J, C genes

  Shell

  •

  Creative Commons Attribution 4.0 International

  •3•0•0•0•Updated Oct 15, 2020Oct 15, 2020

• GxfUtils

  Public
  Yet Another Set of Tools to Manipulate GFF/GTF Files

  Python

  •0•0•0•0•Updated May 23, 2020May 23, 2020

• ShinySDAscSeq

  Public
  A shinydashboard template

  R

  •0•0•0•0•Updated Feb 25, 2020Feb 25, 2020

• deseq2shiny

  Public
  a web-based R shiny application that wraps DESeq2 R package

  R

  •7•0•0•0•Updated Feb 2, 2020Feb 2, 2020

• ShinySeuratHelper

  Public
  Shiny Seurat Helper (SSH)

  R

  •0•0•0•0•Updated Jan 30, 2020Jan 30, 2020

• loe

  Public
  ❗ This is a read-only mirror of the CRAN R package repository. loe — Local Ordinal Embedding

  C

  •1•0•0•0•Updated Mar 21, 2016Mar 21, 2016