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    • The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.
      Python
      Apache License 2.0
      23184Updated Jan 24, 2025Jan 24, 2025
    • Rust
      Apache License 2.0
      1104Updated Jan 24, 2025Jan 24, 2025
    • ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      Kotlin
      Creative Commons Zero v1.0 Universal
      41761.3k141Updated Jan 24, 2025Jan 24, 2025
    • R tools for short-term forecasting
      R
      Apache License 2.0
      2471Updated Jan 24, 2025Jan 24, 2025
    • Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew
      Python
      Apache License 2.0
      25547Updated Jan 24, 2025Jan 24, 2025
    • Data Ingestion for Modernization of NEDSS Project by Enquizit
      Java
      Apache License 2.0
      3606Updated Jan 24, 2025Jan 24, 2025
    • phoenix

      Public
      🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      Apache License 2.0
      1962141Updated Jan 24, 2025Jan 24, 2025
    • Bringing together healthcare partners by reducing the connection burden.
      Groovy
      Apache License 2.0
      9111485Updated Jan 24, 2025Jan 24, 2025
    • This repository is created for NEDSS Helm charts.
      Smarty
      Apache License 2.0
      2207Updated Jan 24, 2025Jan 24, 2025
    • phdi

      Public
      HTML
      Creative Commons Zero v1.0 Universal
      153624311Updated Jan 24, 2025Jan 24, 2025
    • A rust crate that automatically cleans up a gene alignment by trimming to ORF and identifying and/or removing problematic sequences.
      Rust
      Apache License 2.0
      1160Updated Jan 24, 2025Jan 24, 2025
    • Python
      Apache License 2.0
      11193Updated Jan 23, 2025Jan 23, 2025
    • cfa_azure

      Public
      Python
      Apache License 2.0
      3920Updated Jan 23, 2025Jan 23, 2025
    • eMKF

      Public
      SAS
      Apache License 2.0
      2200Updated Jan 23, 2025Jan 23, 2025
    • Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      3600Updated Jan 23, 2025Jan 23, 2025
    • CDC OpenViz is a library of React packages for data visualization.
      TypeScript
      Apache License 2.0
      2138012Updated Jan 23, 2025Jan 23, 2025
    • The Public Health Data Observability (PHDO) Processing Status API (PS API) was developed to provide visibility into the status and performance of file uploads. The PS API provides the ability to receive reports about the status of uploads, and to develop custom queries to ask detailed questions about the data being uploaded and processed.
      Kotlin
      Apache License 2.0
      1201Updated Jan 23, 2025Jan 23, 2025
    • Enterprise Data Exchange (DEX) is a new cloud-native centralized data ingestion, validation, and observation service scoped for common data types (HL7, FHIR, CDA, XML, CSV) sent to the CDC. It helps public health stakeholders who send data to the CDC while reducing the maintenance efforts, complexity, and duplication of ingestion points to CDC.
      C#
      Apache License 2.0
      4111572Updated Jan 23, 2025Jan 23, 2025
    • Data Near Real Time Reporting micro services for Modernized NBS System
      TSQL
      Apache License 2.0
      1002Updated Jan 23, 2025Jan 23, 2025
    • R
      Apache License 2.0
      410343Updated Jan 23, 2025Jan 23, 2025
    • JavaScript
      2108Updated Jan 23, 2025Jan 23, 2025
    • Python
      Apache License 2.0
      1181Updated Jan 23, 2025Jan 23, 2025
    • MIRA-NF

      Public
      Nextflow
      MIT License
      2310Updated Jan 23, 2025Jan 23, 2025
    • SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      Java
      Creative Commons Zero v1.0 Universal
      55592538Updated Jan 23, 2025Jan 23, 2025
    • A repository of public resources for handling web based certificates, mirroring an internal repository
      Creative Commons Zero v1.0 Universal
      0000Updated Jan 23, 2025Jan 23, 2025
    • A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN
      TypeScript
      Creative Commons Zero v1.0 Universal
      25413Updated Jan 23, 2025Jan 23, 2025
    • DynODE

      Public
      CDC/CFA/Predict/Scenarios ODE Modeling Framework
      Python
      Apache License 2.0
      17414Updated Jan 23, 2025Jan 23, 2025
    • The Public Health Data Operations (PHDO) Upload service provides secure ingestion, delivery, and observability of public health files from data senders to CDC program target locations via Application Programming Interfaces (APIs).
      Go
      Apache License 2.0
      494218Updated Jan 23, 2025Jan 23, 2025
    • Java
      31906Updated Jan 23, 2025Jan 23, 2025
    • R
      2100Updated Jan 23, 2025Jan 23, 2025