Repositories list

• coherent-lasers

  Public
  Python drivers for coherent lasers

  Python

  •

  MIT License

  •2•0•0•0•Updated Feb 9, 2025Feb 9, 2025

• aind-beh-ephys-analysis

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

• aind-slims-api

  Public
  AIND-specific access to data stored in SLIMS

  Python

  •

  MIT License

  •1•0•4•2•Updated Feb 9, 2025Feb 9, 2025

• aind-smartspim-pipeline

  Public
  Repository that hosts the SmartSPIM pipeline code

  Nextflow

  •

  MIT License

  •1•2•1•0•Updated Feb 8, 2025Feb 8, 2025

• aind-smartspim-quantification

  Public
  Takes the output of segmentation and ccf registration to calculate cell counts per brain region

  Python

  •

  MIT License

  •2•1•4•0•Updated Feb 8, 2025Feb 8, 2025

• aind-smartspim-classification

  Public
  Code for classifying the cell candidate outputs from aind-smartspim-segmentation within smartspim pipeline

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 8, 2025Feb 8, 2025

• foraging-behavior-browser

  Public
  Foraging behavior browser (streamlit)

  Python

  •

  MIT License

  •2•2•12•0•Updated Feb 8, 2025Feb 8, 2025

• aind-analysis-arch-result-access

  Public
  accessing results from aind analysis architecture

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 8, 2025Feb 8, 2025

• thalamus-merfish-analysis

  Public
  Code Ocean capsule for sharing analysis of thalamus MERFISH data

  Jupyter Notebook

  •

  MIT License

  •1•2•2•0•Updated Feb 8, 2025Feb 8, 2025

• iGluSnFR-simulation

  Public
  Python

  •

  MIT License

  •0•1•0•0•Updated Feb 8, 2025Feb 8, 2025

• Aind.Behavior.Services

  Public
  A repository containing code for data acquisition and processing for AIND behavior rigs.

  aind-behavior

  Python

  •

  MIT License

  •0•0•5•2•Updated Feb 8, 2025Feb 8, 2025

• aind-dynamic-foraging-data-utils

  Public
  Tools for the analysis of behavior and neural data from the dynamic foraging task

  Python

  •

  MIT License

  •0•2•24•1•Updated Feb 8, 2025Feb 8, 2025

• aind-ephys-ibl-gui-conversion

  Public
  convert ephys data for use in ibl gui

  Python

  •

  MIT License

  •1•0•0•1•Updated Feb 8, 2025Feb 8, 2025

• aind-SmartSPIM-segmentation

  Public
  segmentation module for SmartSPIM cloud pipeline

  Python

  •

  MIT License

  •1•2•1•0•Updated Feb 8, 2025Feb 8, 2025

• aind-data-transfer-models

  Public
  Repository for data models used in aind-data-transfer-service

  aind-data-infrastructure

  Python

  •

  MIT License

  •0•0•2•1•Updated Feb 8, 2025Feb 8, 2025

• aind-docker-images

  Public
  aind-data-infrastructure

  Dockerfile

  •

  MIT License

  •0•0•1•1•Updated Feb 8, 2025Feb 8, 2025

• metadata-chatbot

  Public
  LLM (Anthropic Claude) based chatbot that can query, ingest and summarize metadata in a conversational form

  metadata-chatbot

  Python

  •

  MIT License

  •0•2•13•0•Updated Feb 7, 2025Feb 7, 2025

• harp.device.environment-sensor

  Public
  0357: harp-compliant humidity, pressure, and temperature sensor

  harp

  C

  •

  MIT License

  •0•0•6•2•Updated Feb 7, 2025Feb 7, 2025

• aind-foraging-behavior-bonsai-trigger-pipeline

  Public
  Python

  •

  MIT License

  •0•1•1•0•Updated Feb 7, 2025Feb 7, 2025

• aind-data-schema

  Public
  A library that defines AIND data schema and validates JSON.

  aind-core-services

  Python

  •

  MIT License

  •17•24•55•7•Updated Feb 7, 2025Feb 7, 2025

• harp.device.sniff-detector

  Public
  Signal conditioning board for an implanted thermistor

  harp

  C#

  •

  MIT License

  •0•0•2•0•Updated Feb 7, 2025Feb 7, 2025

• aind-qc-portal

  Public
  Quality control portal

  Python

  •

  MIT License

  •0•1•14•2•Updated Feb 7, 2025Feb 7, 2025

• iGluSnFR-In-Vivo-MC-Evaluation

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• aind_su_etal_2022_conversion

  Public
  Migrated code from matlab to Python in su_etal_2022

  Jupyter Notebook

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• kicad-lib

  Public
  KiCAD footprints, symbols, and 3d models

  MIT License

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• harp.device.valve-controller

  Public
  0356: a 16-channel valve controller

  harp

  C++

  •0•0•1•0•Updated Feb 7, 2025Feb 7, 2025

• aind-metadata-service

  Public
  Service to retrieve Labtracks/Sharepoint info using a REST API

  aind-data-infrastructure

  Python

  •

  MIT License

  •1•3•16•1•Updated Feb 7, 2025Feb 7, 2025

• dynamic-foraging-task

  Public
  Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

  Python

  •

  MIT License

  •4•5•103•9•Updated Feb 7, 2025Feb 7, 2025

• dynamicrouting-encoding-fit

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• dynamicrouting-encoding-io

  Public
  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Feb 7, 2025Feb 7, 2025