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    37 repositories

    • gen3_util

      Public
      Collection of command line tools to interact with a Gen3 instance
      Python
      •
      MIT License
      •1•3•7•3•Updated Feb 14, 2025Feb 14, 2025

    • gen3-frontend-framework

      Public
      A Frontend Framework for Gen3 data portals
      TypeScript
      •
      Apache License 2.0
      •6•1•4•0•Updated Feb 13, 2025Feb 13, 2025

    • aced-idp.github.io

      Public
      Documentation Site for the ACED Data Commons
      Apache License 2.0
      •1•1•9•1•Updated Feb 12, 2025Feb 12, 2025

    • aced_etl_pod

      Public
      etl worker pod
      Python
      •
      MIT License
      •1•2•3•1•Updated Feb 11, 2025Feb 11, 2025

    • cdis-data-client

      Public
      data access client
      Go
      •
      Apache License 2.0
      •9•1•0•0•Updated Feb 11, 2025Feb 11, 2025

    • gen3-helm

      Public
      Helm charts for Gen3 Deployments
      Smarty
      •
      Apache License 2.0
      •25•1•15•2•Updated Feb 10, 2025Feb 10, 2025

    • submission

      Public
      Submit FHIR based data into a Gen3 Commons
      Python
      •0•1•7•1•Updated Feb 3, 2025Feb 3, 2025

    • status-monitor

      Public archive
      Uptime/downtime monitor and status page for ACED data commons
      uptime-monitorstatus-pageupptime
      Markdown
      •
      MIT License
      •0•1•0•0•Updated Jan 29, 2025Jan 29, 2025

    • g3t_etl

      Public
      Transform submissions into FHIR
      Python
      •0•0•8•1•Updated Jan 23, 2025Jan 23, 2025

    • gen3-code-vigil

      Public
      Gen3 Testing
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • guppy

      Public
      Server that supports GraphQL queries on data from Elasticsearch
      JavaScript
      •
      Apache License 2.0
      •12•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • image_viewer

      Public
      create urls for image viewer, coverts object_id to signed url
      Python
      •
      MIT License
      •0•0•4•2•Updated Oct 24, 2024Oct 24, 2024

    • fhir_server

      Public
      A FHIR server built for direct integration with Gen3
      Python
      •0•0•0•1•Updated Oct 17, 2024Oct 17, 2024

    • viv

      Public
      Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
      JavaScript
      •
      MIT License
      •47•0•0•1•Updated Oct 17, 2024Oct 17, 2024

    • arborist_users

      Public
      Extract arborist entities[resource, role, policy, etc.] from current k8s context, create user.yaml
      Python
      •0•1•3•0•Updated May 10, 2024May 10, 2024

    • graph-benchmark

      Public
      Python
      •0•0•0•0•Updated May 5, 2024May 5, 2024

    • synapse-sync

      Public
      Extract teams from synapse
      Python
      •0•0•0•0•Updated Apr 16, 2024Apr 16, 2024

    • gen3-tests

      Public
      Framework for release testing of Gen3 instances
      Apache License 2.0
      •0•0•0•0•Updated Feb 14, 2024Feb 14, 2024

    • cloud-automation

      Public
      Automation for standing up Gen3 commons
      Shell
      •
      Apache License 2.0
      •68•1•0•0•Updated Jan 10, 2024Jan 10, 2024

    • dictionaryutils

      Public
      python wrapper and metaschema for datadictionary
      Python
      •
      Apache License 2.0
      •7•0•0•0•Updated Dec 12, 2023Dec 12, 2023

    • data_model

      Public
      Schema and synthetic data
      Python
      •1•2•18•1•Updated Nov 30, 2023Nov 30, 2023

    • benchwarmer

      Public
      Benchmarking tool used to test upload speeds of the gen3-client and S3-compatible storage endpoints
      Shell
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 27, 2023Oct 27, 2023

    • UCL-certs

      Public
      Add UCL Certs to linux / python environment
      Shell
      •0•0•0•0•Updated Oct 6, 2023Oct 6, 2023

    • nvidia-collaboration

      Public
      OHSU CEDAR Cyclic IF and H&E images
      Python
      •0•0•5•0•Updated Jul 19, 2023Jul 19, 2023

    • minio-deploy

      Public
      A collection of Ansible playbooks and instructions on Minio deployment
      Apache License 2.0
      •0•2•3•0•Updated Jul 6, 2023Jul 6, 2023

    • data-portal

      Public
      Windmill: data portal for metadata submission and query
      JavaScript
      •
      Apache License 2.0
      •45•0•0•0•Updated May 25, 2023May 25, 2023

    • gen3sdk-python

      Public
      Gen3 SDK for Python
      Python
      •
      Apache License 2.0
      •24•0•0•0•Updated May 5, 2023May 5, 2023

    • MCF10A

      Public
      LINCS MCF10A Molecular Deep Dive (MDD)
      Python
      •0•0•5•1•Updated May 2, 2023May 2, 2023

    • dir_to_study

      Public
      A utility to create a "bare bones" ResearchStudy with DocumentReference
      0•1•0•1•Updated Apr 12, 2023Apr 12, 2023

    • devops

      Public
      Playbooks and scripts
      0•1•4•0•Updated Mar 3, 2023Mar 3, 2023