fix(study_locus_valiation): ensure the the transQtlColumn is missing #2920
Workflow file for this run
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name: Checks | |
"on": | |
pull_request: | |
env: | |
PYTHON_VERSION_DEFAULT: "3.11.11" | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ["3.10", "3.11", "3.12"] | |
fail-fast: false | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 1 | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Set up Java | |
uses: actions/setup-java@v4 | |
with: | |
java-version: "11" | |
distribution: "temurin" | |
- name: Install uv | |
uses: astral-sh/setup-uv@v5 | |
- name: Load cached venv | |
id: cached-uv-dependencies | |
uses: actions/cache@v4 | |
with: | |
path: .venv | |
key: venv-${{ runner.os }}-${{ matrix.python-version }}-${{ hashFiles('**/uv.lock') }} | |
- name: Install dependencies | |
if: steps.cached-uv-dependencies.outputs.cache-hit != 'true' | |
run: uv sync --all-groups | |
- name: Check dependencies | |
run: uv run deptry . | |
- name: Run tests | |
run: uv run pytest | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v5 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
files: ./coverage.xml | |
fail_ci_if_error: false | |
verbose: true |