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AnnData to FCS converter #14

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LuLeom opened this issue Jan 16, 2025 · 2 comments
Open

AnnData to FCS converter #14

LuLeom opened this issue Jan 16, 2025 · 2 comments
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enhancement New feature or request

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@LuLeom
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LuLeom commented Jan 16, 2025

Some of the methods strictly require FCS file format as input.
In order to run those methods a functionality that convert AnnData objects to FCS files is needed.

@LuLeom LuLeom added the enhancement New feature or request label Jan 16, 2025
@LuLeom LuLeom self-assigned this Jan 16, 2025
@rcannood
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I think these are all R methods right? We can store helper functions as separate R helper functions and add them as resources

@LuLeom
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LuLeom commented Feb 13, 2025

Correct, these are all R methods.

I already have a working script for conversion, although it just creates 'plain' fcs files with only markers expression.

(I wonder if some other kind of metadata needs to be written on the fcs file, but I do not see the added value of implementing that for the time being).

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