diff --git a/src/api/file_common_dataset.yaml b/src/api/file_common_dataset.yaml index d9746a2..01526dc 100644 --- a/src/api/file_common_dataset.yaml +++ b/src/api/file_common_dataset.yaml @@ -31,6 +31,16 @@ info: name: group description: Biological group of the donor required: true + - type: integer + name: is_control + description: | + Whether the sample the cell came from can be used as a control for batch + effect correction. + 0: cannot be used as a control. + >= 1: can be used as a control. + For cells with >= 1: cells with the same value come from the same donor. + Different values indicate different donors. + required: true var: - type: integer name: numeric_id @@ -52,11 +62,6 @@ info: name: to_correct description: Whether the marker will be batch corrected required: true - # obsm: - # - type: double - # name: X_pca - # description: The resulting PCA embedding. - # required: true uns: - type: string name: dataset_id diff --git a/src/api/file_unintegrated_censored.yaml b/src/api/file_unintegrated_censored.yaml index d72d048..874482e 100644 --- a/src/api/file_unintegrated_censored.yaml +++ b/src/api/file_unintegrated_censored.yaml @@ -57,11 +57,6 @@ info: name: to_correct description: Whether the marker will be batch corrected required: true - # obsm: - # - type: double - # name: X_pca - # description: The resulting PCA embedding. - # required: true uns: - type: string name: dataset_id