Resolve brain hierarchy in article count / listing #18

BoBer78 · 2025-02-26T16:17:57Z

closes #16

src/scholarag/hierarchy_resolving.py

WonderPG · 2025-03-03T10:09:05Z

src/scholarag/utils.py

+        expanded_brain_regions = []
+        for region in regions:
+            expanded_brain_regions.extend(
+                get_descendants_names(region, "brainregion_hierarchy.json")


This should be an env var in theory, but nexus will soon be removed and we track it on git so I guess it's fine.

Here we redefine the class and the processing for every brain region. We should maybe instantiate the class and read the json once, then call the resolving in the for loop.

To be discussed, anyways, this will be closed

src/scholarag/utils.py

tests/test_utils.py

BoBer78 · 2025-03-05T09:37:58Z

not needed anymore, we can re-open if there are some decision changes in 2 days.

BoBer78 added 6 commits February 26, 2025 17:16

first working prototype

2ebe8e6

add test for hierarchy

aea6a30

add all tests

a50b81f

set SLL to true

4ac6727

better query length limiter

29940f6

make hierarchy check true by default

b99cbbb