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View in biofile finder #436

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With $ ome_zarr view my_image.zarr we can view a single zarr image (or plate etc) in the ome-ngff-validator by serving the image from a local python server.

But this PR allows you to browse a collection of images in your local filesystem with:

$ ome_zarr view path/to/my_data_folder/

This command will traverse your local filesystem, looking for zarr images (only .zattrs for now - need to also support zarr v3) and collect them into a CSV. This CSV is then served by the localhost python server and opened in BioFile Finder, allowing you to browse your local zarr images which are also served in the same way (and see thumbnails, copy URL etc).

Screenshot 2025-02-14 at 12 44 58

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codecov bot commented Feb 14, 2025

Codecov Report

Attention: Patch coverage is 6.32911% with 74 lines in your changes missing coverage. Please review.

Project coverage is 81.69%. Comparing base (1e3e3e2) to head (77a021b).
Report is 8 commits behind head on master.

Files with missing lines Patch % Lines
ome_zarr/utils.py 6.32% 74 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master     #436      +/-   ##
==========================================
- Coverage   85.45%   81.69%   -3.77%     
==========================================
  Files          13       13              
  Lines        1540     1617      +77     
==========================================
+ Hits         1316     1321       +5     
- Misses        224      296      +72     

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