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Update INSTALL.md
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marcdelpino authored Mar 26, 2019
1 parent 17b9bdc commit d100119
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14 changes: 10 additions & 4 deletions INSTALL.md
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Expand Up @@ -8,9 +8,9 @@ git clone https://github.com/nucleosome-dynamics/nucleosome_dynamics.git

Some functionalities of these scripts depend on third-party software that needs an independent installation:

- 1. nucleR R package
- 2. NucDyn R package
- 3. UCSC wig utils
- nucleR R package
- NucDyn R package
- UCSC wig utils


<a name="nucleR"></a>
Expand All @@ -30,11 +30,17 @@ mkdir wig_utils;
cd wig_utils;
wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/wigToBigWig && \
wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bigWigToWig && \
wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/fetchChromSizes
wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/fetchChromSizes;
chmod a+x *
```

Make sure you save them in a directory included in your **$PATH**, or simply add your installation path directory to it by editing in your `.bashrc` home directory the following line:

```sh
export PATH="$PATH:/absolute/path/to/wig_utils"
```
And source it:
```sh
source .bashrc
```

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