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The folder contains two main python files for color-coded data analysis.
- Ellipsoid.py generates the dendrogram and coordinate variation ellipsoid
- Cellcluster.py generates scatter plot for cell-based cluster visuallization
author: "Thu Nguyen"
copyright: "Copyright (C) 2020 Thu Nguyen"
license: "LGPL 2.1"
version: "1.0"
The files: cctable.dat, CLUSTERS.txt, manual_coordinate_146.txt are inputs of ellipsoid.py. Here we use height cutoff at 1.0 to get the output of the paper
The files: cell_base.cvs is the input of cellcluster.py