added undergrad work

.Rproj.user/shared/notebooks/paths

@@ -1,3 +1,3 @@
-F:/OneDrive_Auburn/mizumoto-lab-manual/01-expectation_and_responsibility.Rmd="D1F7EFD6"
-F:/OneDrive_Auburn/mizumoto-lab-manual/04-technologies.Rmd="3FEF96E4"
-F:/OneDrive_Auburn/mizumoto-lab-manual/05-funding.Rmd="3D46CF34"
+C:/Users/nobua/OneDrive_Auburn/mizumoto-lab-manual/03-general_policies.Rmd="EB7E4A2F"
+C:/Users/nobua/OneDrive_Auburn/mizumoto-lab-manual/04-technologies.Rmd="515EE04C"
+C:/Users/nobua/OneDrive_Auburn/mizumoto-lab-manual/index.Rmd="845C5061"

03-general_policies.Rmd

@@ -36,7 +36,7 @@ Ultimately, the job of researchers is writing. Therefore, graduate students are
 * There are graduate school rules for the upper threshold for the amount that can be added to your base stipend. So, I may not be able to increase the stipend sometimes (e.g., if you get a $1M grant, I cannot add $100,000), but I do my best. 
 
 2. **Undergraduates**
-Undergraduate student pay rates usually begin at $10 per hour.
+Undergraduate student pay rates usually begin at $12 per hour. Undergrads research assistants are expected to work more than 10 hours per week to have regular interactions. The time attending lab meeting or studying specific tools relating to their work can be counted towards working hour.
 
 ----------
 

_book/404.html

@@ -6,7 +6,7 @@
   <meta http-equiv="X-UA-Compatible" content="IE=edge" />
   <title>Page not found | Mizumoto Lab Manual</title>
   <meta name="description" content="This is the lab manual for the Mizumoto Lab at Auburn University." />
-  <meta name="generator" content="bookdown 0.41 and GitBook 2.6.7" />
+  <meta name="generator" content="bookdown 0.40 and GitBook 2.6.7" />
 
   <meta property="og:title" content="Page not found | Mizumoto Lab Manual" />
   <meta property="og:type" content="book" />
@@ -23,7 +23,7 @@
 <meta name="author" content="Nobuaki Mizumoto" />
 
 
-<meta name="date" content="2025-01-16" />
+<meta name="date" content="2025-01-21" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -105,6 +105,7 @@
 <li class="chapter" data-level="4.2" data-path="general-policies.html"><a href="general-policies.html#lab-meetings-and-seminars"><i class="fa fa-check"></i><b>4.2</b> Lab meetings and seminars</a></li>
 <li class="chapter" data-level="4.3" data-path="general-policies.html"><a href="general-policies.html#pi-availability"><i class="fa fa-check"></i><b>4.3</b> PI Availability</a></li>
 <li class="chapter" data-level="4.4" data-path="general-policies.html"><a href="general-policies.html#presentations"><i class="fa fa-check"></i><b>4.4</b> Presentations</a></li>
+<li class="chapter" data-level="4.5" data-path="general-policies.html"><a href="general-policies.html#recommendation-letters"><i class="fa fa-check"></i><b>4.5</b> Recommendation Letters</a></li>
 </ul></li>
 <li class="chapter" data-level="5" data-path="technologies.html"><a href="technologies.html"><i class="fa fa-check"></i><b>5</b> Technologies</a>
 <ul>

_book/index.html

@@ -23,7 +23,7 @@
 <meta name="author" content="Nobuaki Mizumoto" />
 
 
-<meta name="date" content="2024-09-06" />
+<meta name="date" content="2025-01-21" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -114,31 +114,45 @@
 <li class="chapter" data-level="5.1.1" data-path="technologies.html"><a href="technologies.html#termite-handling"><i class="fa fa-check"></i><b>5.1.1</b> Termite handling</a></li>
 <li class="chapter" data-level="5.1.2" data-path="technologies.html"><a href="technologies.html#lab-waste"><i class="fa fa-check"></i><b>5.1.2</b> Lab waste</a></li>
 </ul></li>
-<li class="chapter" data-level="5.2" data-path="technologies.html"><a href="technologies.html#field"><i class="fa fa-check"></i><b>5.2</b> Field</a></li>
+<li class="chapter" data-level="5.2" data-path="technologies.html"><a href="technologies.html#field"><i class="fa fa-check"></i><b>5.2</b> Field</a>
+<ul>
+<li class="chapter" data-level="5.2.1" data-path="technologies.html"><a href="technologies.html#gps-coordinates"><i class="fa fa-check"></i><b>5.2.1</b> GPS coordinates</a></li>
+</ul></li>
 <li class="chapter" data-level="5.3" data-path="technologies.html"><a href="technologies.html#hardware"><i class="fa fa-check"></i><b>5.3</b> Hardware</a>
 <ul>
 <li class="chapter" data-level="5.3.1" data-path="technologies.html"><a href="technologies.html#lab-pcs"><i class="fa fa-check"></i><b>5.3.1</b> Lab PCs</a></li>
 <li class="chapter" data-level="5.3.2" data-path="technologies.html"><a href="technologies.html#raspberry-pi"><i class="fa fa-check"></i><b>5.3.2</b> Raspberry Pi</a></li>
 </ul></li>
-<li class="chapter" data-level="5.4" data-path="technologies.html"><a href="technologies.html#data-management-1"><i class="fa fa-check"></i><b>5.4</b> Data management</a>
+<li class="chapter" data-level="5.4" data-path="technologies.html"><a href="technologies.html#data-management-practices"><i class="fa fa-check"></i><b>5.4</b> Data management practices</a>
 <ul>
 <li class="chapter" data-level="5.4.1" data-path="technologies.html"><a href="technologies.html#naming-files"><i class="fa fa-check"></i><b>5.4.1</b> Naming files</a></li>
 <li class="chapter" data-level="5.4.2" data-path="technologies.html"><a href="technologies.html#onedrive"><i class="fa fa-check"></i><b>5.4.2</b> OneDrive</a></li>
 <li class="chapter" data-level="5.4.3" data-path="technologies.html"><a href="technologies.html#box"><i class="fa fa-check"></i><b>5.4.3</b> Box</a></li>
-<li class="chapter" data-level="5.4.4" data-path="technologies.html"><a href="technologies.html#hdds"><i class="fa fa-check"></i><b>5.4.4</b> HDDs</a></li>
+<li class="chapter" data-level="5.4.4" data-path="technologies.html"><a href="technologies.html#git-and-github"><i class="fa fa-check"></i><b>5.4.4</b> Git and Github</a></li>
+<li class="chapter" data-level="5.4.5" data-path="technologies.html"><a href="technologies.html#hdds"><i class="fa fa-check"></i><b>5.4.5</b> HDDs</a></li>
 </ul></li>
 <li class="chapter" data-level="5.5" data-path="technologies.html"><a href="technologies.html#software"><i class="fa fa-check"></i><b>5.5</b> Software</a>
 <ul>
-<li class="chapter" data-level="5.5.1" data-path="technologies.html"><a href="technologies.html#git-and-github"><i class="fa fa-check"></i><b>5.5.1</b> Git and Github</a></li>
-<li class="chapter" data-level="5.5.2" data-path="technologies.html"><a href="technologies.html#r-and-rstudio"><i class="fa fa-check"></i><b>5.5.2</b> R and RStudio</a></li>
-<li class="chapter" data-level="5.5.3" data-path="technologies.html"><a href="technologies.html#python"><i class="fa fa-check"></i><b>5.5.3</b> Python</a></li>
-<li class="chapter" data-level="5.5.4" data-path="technologies.html"><a href="technologies.html#use-python-in-rstudio"><i class="fa fa-check"></i><b>5.5.4</b> Use Python in Rstudio</a></li>
-<li class="chapter" data-level="5.5.5" data-path="technologies.html"><a href="technologies.html#video-edit"><i class="fa fa-check"></i><b>5.5.5</b> Video edit</a></li>
-<li class="chapter" data-level="5.5.6" data-path="technologies.html"><a href="technologies.html#tracking-software"><i class="fa fa-check"></i><b>5.5.6</b> Tracking software</a></li>
-<li class="chapter" data-level="5.5.7" data-path="technologies.html"><a href="technologies.html#opencv"><i class="fa fa-check"></i><b>5.5.7</b> OpenCV</a></li>
-<li class="chapter" data-level="5.5.8" data-path="technologies.html"><a href="technologies.html#vpn"><i class="fa fa-check"></i><b>5.5.8</b> VPN</a></li>
+<li class="chapter" data-level="5.5.1" data-path="technologies.html"><a href="technologies.html#r-and-rstudio"><i class="fa fa-check"></i><b>5.5.1</b> R and RStudio</a></li>
+<li class="chapter" data-level="5.5.2" data-path="technologies.html"><a href="technologies.html#python"><i class="fa fa-check"></i><b>5.5.2</b> Python</a></li>
+<li class="chapter" data-level="5.5.3" data-path="technologies.html"><a href="technologies.html#use-python-in-rstudio"><i class="fa fa-check"></i><b>5.5.3</b> Use Python in Rstudio</a></li>
+<li class="chapter" data-level="5.5.4" data-path="technologies.html"><a href="technologies.html#ffmpeg-video-edits"><i class="fa fa-check"></i><b>5.5.4</b> FFmpeg (Video edits)</a></li>
+<li class="chapter" data-level="5.5.5" data-path="technologies.html"><a href="technologies.html#tracking-software"><i class="fa fa-check"></i><b>5.5.5</b> Tracking software</a></li>
+<li class="chapter" data-level="5.5.6" data-path="technologies.html"><a href="technologies.html#opencv"><i class="fa fa-check"></i><b>5.5.6</b> OpenCV</a></li>
+<li class="chapter" data-level="5.5.7" data-path="technologies.html"><a href="technologies.html#vpn"><i class="fa fa-check"></i><b>5.5.7</b> VPN</a></li>
+<li class="chapter" data-level="5.5.8" data-path="technologies.html"><a href="technologies.html#zotero-literature-management"><i class="fa fa-check"></i><b>5.5.8</b> Zotero (literature management)</a></li>
+</ul></li>
+<li class="chapter" data-level="5.6" data-path="technologies.html"><a href="technologies.html#smartphone"><i class="fa fa-check"></i><b>5.6</b> Smartphone</a>
+<ul>
+<li class="chapter" data-level="5.6.1" data-path="technologies.html"><a href="technologies.html#camera-app"><i class="fa fa-check"></i><b>5.6.1</b> Camera app</a></li>
+</ul></li>
+<li class="chapter" data-level="5.7" data-path="technologies.html"><a href="technologies.html#writing"><i class="fa fa-check"></i><b>5.7</b> Writing</a></li>
+<li class="chapter" data-level="5.8" data-path="technologies.html"><a href="technologies.html#supplies"><i class="fa fa-check"></i><b>5.8</b> Supplies</a></li>
+<li class="chapter" data-level="5.9" data-path="technologies.html"><a href="technologies.html#notes-1"><i class="fa fa-check"></i><b>5.9</b> Notes</a>
+<ul>
+<li class="chapter" data-level="5.9.1" data-path="technologies.html"><a href="technologies.html#what-is-path"><i class="fa fa-check"></i><b>5.9.1</b> What is PATH?</a></li>
+<li class="chapter" data-level="5.9.2" data-path="technologies.html"><a href="technologies.html#i-cannot-play-a-video-on-my-pc"><i class="fa fa-check"></i><b>5.9.2</b> I cannot play a video on my PC</a></li>
 </ul></li>
-<li class="chapter" data-level="5.6" data-path="technologies.html"><a href="technologies.html#writing"><i class="fa fa-check"></i><b>5.6</b> Writing</a></li>
 </ul></li>
 <li class="chapter" data-level="6" data-path="opporunities.html"><a href="opporunities.html"><i class="fa fa-check"></i><b>6</b> Opporunities</a>
 <ul>
@@ -170,7 +184,7 @@ <h1>
 <div id="header">
 <h1 class="title">Mizumoto Lab Manual</h1>
 <p class="author"><em>Nobuaki Mizumoto</em></p>
-<p class="date"><em>2024-09-06</em></p>
+<p class="date"><em>2025-01-21</em></p>
 </div>
 <div id="mizumoto-lab-manual" class="section level1 hasAnchor" number="1">
 <h1><span class="header-section-number">Chapter 1</span> Mizumoto Lab Manual<a href="index.html#mizumoto-lab-manual" class="anchor-section" aria-label="Anchor link to header"></a></h1>