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Welcome to the CLdb Wiki!

This wiki is a guide to database creation and performing workflows with the database.

Help

• Getting help

For the impatient

• Quick tutorial

Starting out

• Requirements
• Database setup
• Initial data loading

Workflows

General data retrieval and database management

• Get summary info
• Get a fasta
• Write tables
• Delete entries

Leaders

• Find and load leaders

Spacer blast

• blast vs genome
• blast vs nt
• GFF3 of blast hits

PAMs

• get PAMs

spacer-protospacer mismatches

• protospacer mismatch

Plotting loci

• Plotting loci

Classifying subtype of arrays based on direct repeats

• Classify arrays

How do I...?

• [Remove all entries associated with an organism (taxon_name or taxon_id)?][How do I]