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v1.2.3 - Bouncy Basenji Patch PR #583

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sofstam wants to merge 61 commits intomasternf-core/taxprofiler:masterfrom devnf-core/taxprofiler:devCopy head branch name to clipboard

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Commits on Jan 15, 2025

• Post-release bump version

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• Update CHANGELOG.md

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• Prettier

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• Merge branch 'bump_version_1.3.0' of https://github.com/nf-core/taxprofiler into bump_version_1.3.0

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• [automated] Fix code linting

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• Merge pull request #568 from nf-core/bump_version_1.3.0

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Commits on Jan 20, 2025

• Template update for nf-core/tools version 3.1.2

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Commits on Jan 23, 2025

• Merge branch 'dev' into nf-core-template-merge-3.1.2

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• Update nextflow.config

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• Update nextflow.config

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• Update zenodo

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• Update nextflow.config

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• Update README.md

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• Apply suggestions from code review

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• Merge pull request #569 from nf-core/nf-core-template-merge-3.1.2

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Commits on Jan 27, 2025

• Template update for nf-core/tools version 3.2.0

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Commits on Jan 28, 2025

• Merge branch 'dev' into nf-core-template-merge-3.2.0

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• Merge pull request #571 from nf-core/nf-core-template-merge-3.2.0

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Commits on Jan 30, 2025

• Improve docs for taxpasta related flags

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• Merge pull request #573 from nf-core/better-docs

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• Update CHANGELOG.md

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Commits on Feb 3, 2025

• Include batch index in task label.

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• Fix: Use db_name in process tag.

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• Sort input channel to krakenuniq to enable task caching.

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Commits on Feb 4, 2025

• Replace collect() with toSortedList()

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• Update CHANGELOG.md

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• Update CHANGELOG.md

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Commits on Feb 5, 2025

• Merge pull request #575 from nf-core/changelog-for-docschagnes

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Commits on Feb 12, 2025

• Merge branch 'dev' into master

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• Changed sort comparator to avoid type mismatch error.

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• Replace function prefix() with closure form_prefix.

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Commits on Feb 13, 2025

• Fixed: Reinsert deleted arguments to closure.

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• Satisfy linting

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• Fix keyword in nextflow_schema.json

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• update changelog

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• Merge pull request #578 from nf-core/fix-schema-keyword

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• Adjust list indices.

  muniheart

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Commits on Feb 15, 2025

• Moved sort operation.

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Commits on Feb 27, 2025

• remove links to multiqc plots

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• Merge pull request #579 from nf-core/remove-links-multiqc-plot

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Commits on Mar 3, 2025

• analysis_read_reads -> analysis_ready_reads

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• space after full stop

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• not can -> nor can

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• added me to README.md

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Commits on Mar 6, 2025

• Merge pull request #580 from AlexHoratio/minor_typos_fix

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• Merge pull request #576 from muniheart/master

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Commits on Mar 11, 2025

• Add missing template updates

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• add missing typo fixes

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• Merge pull request #582 from nf-core/changelog-post3.20t-tools

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• Prelease bump version

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• [automated] Fix code linting

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• Merge pull request #584 from sofstam/prelease-bump

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• fix code blocks

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• Update CHANGELOG.md

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• [automated] Fix code linting

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• Merge pull request #585 from nf-core/fix-code-blocks

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• Switch from using save_analysis_ready_reads to save_analysis_ready_fastqs in docs.

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Commits on Mar 12, 2025

• Update CHANGELOG.md

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• Merge branch 'dev' into fix_docs_saves

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• Update README.md

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• Merge pull request #586 from epstein6/fix_docs_saves

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