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Pull requests: nf-core/mag

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Pull requests list

Allow squashfs image as gtdbtk database.
#785 opened Apr 3, 2025 by muniheart Loading…
Add bin size filtering
#784 opened Apr 2, 2025 by jfy133 • Draft
11 tasks
1
4
Release PR for 3.4.0
#782 opened Apr 1, 2025 by jfy133 Loading…
11 tasks
7
[DO NOT MERGE] Metaspades fusion test
#780 opened Mar 31, 2025 by jfy133 • Draft
11 tasks
2
Replace Bowtie2 custom modules with official nf-core ones
#754 opened Jan 24, 2025 by jfy133 • Draft
1 of 15 tasks
5
Use gtdb r220 in full test
#743 opened Jan 9, 2025 by jfy133 • Draft
11 tasks
5
Migrate BUSCO to nf-core module ready to review
#730 opened Dec 12, 2024 by dialvarezs Loading…
5 of 11 tasks
26
Longread only functionality ready to review
#718 opened Nov 28, 2024 by muabnezor Loading…
11 tasks done
1
101
Add support for generating taxprofiler/funcscan input samplesheets for preprocessed FASTQs/FASTAs
#688 opened Oct 10, 2024 by vagkaratzas • Draft
1 of 11 tasks
1
24
Config restructure
#621 opened May 30, 2024 by jfy133 • Draft
5 of 22 tasks
8
Added test_nothing nf-test and updated CI
#620 opened May 23, 2024 by CarsonJM • Draft
11 tasks
3
Adding pipeline nf-tests to nf-core/mag ready to review
#550 opened Dec 13, 2023 by CarsonJM • Draft
10 tasks
@CarsonJM
2
Added ability to auto-create samplesheet for nf-core/phageannotator enhancement New feature or request ready to review
#543 opened Nov 20, 2023 by CarsonJM • Draft
7 of 10 tasks
@CarsonJM
32
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