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Update nextflow_schema.json
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Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
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mapo9 and ggabernet authored Feb 8, 2024
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2 changes: 1 addition & 1 deletion nextflow_schema.json
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"fa_icon": "fas fa-flask",
"description": "Protocol used for the V(D)J amplicon sequencing library generation.",
"enum": ["specific_pcr_umi", "specific_pcr", "dt_5p_race", "dt_5p_race_umi", "sc_10x_genomics"],
"help_text": "Available protocols are:\n- `specific_pcr_umi`: RT-PCR using transcript-specific primers containing UMIs.\n- `specific_pcr`: RT-PCR using transcript-specific primers.\n- `dt_5p_race_umi`: 5\u2019-RACE PCR using oligo-dT primers and template switch primers containing UMI.\n- `dt_5p_race`: 5\u2019-RACE PCR (i.e. RT is followed by a template switch (TS) step) using oligo-dT primers."
"help_text": "Available protocols are:\n- `specific_pcr_umi`: RT-PCR using transcript-specific primers containing UMIs.\n- `specific_pcr`: RT-PCR using transcript-specific primers.\n- `dt_5p_race_umi`: 5\u2019-RACE PCR using oligo-dT primers and template switch primers containing UMI.\n- `dt_5p_race`: 5\u2019-RACE PCR (i.e. RT is followed by a template switch (TS) step) using oligo-dT primers.\n- `sc_10x_genomics`:10x genomics library preparation protocol for scVDJ sequencing."
},
"race_linker": {
"type": "string",
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