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Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
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mapo9 and ggabernet authored Mar 6, 2024
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## Introduction

**nf-core/airrflow** is a bioinformatics best-practice pipeline to analyze B-cell or T-cell repertoire sequencing data. It makes use of the [Immcantation](https://immcantation.readthedocs.io) toolset. The input data can be targeted amplicon bulk sequencing data of the V, D, J and C regions of the B/T-cell receptor with multiplex PCR or 5' RACE protocol, single cell sequencing data from the 10xGenomics framework, or assembled reads (bulk or single cell).
**nf-core/airrflow** is a bioinformatics best-practice pipeline to analyze B-cell or T-cell repertoire sequencing data. It makes use of the [Immcantation](https://immcantation.readthedocs.io) toolset. The input data can be targeted amplicon bulk sequencing data of the V, D, J and C regions of the B/T-cell receptor with multiplex PCR or 5' RACE protocol, single-cell VDJ sequencing using the 10xGenomics libraries, or assembled reads (bulk or single-cell).

![nf-core/airrflow overview](docs/images/airrflow_workflow_overview.png)

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