diff --git a/base_classes/NXreflections.nxdl.xml b/base_classes/NXreflections.nxdl.xml
index 8337d03c88..1b557003fa 100644
--- a/base_classes/NXreflections.nxdl.xml
+++ b/base_classes/NXreflections.nxdl.xml
@@ -13,533 +13,533 @@
number of experiments
This is a definition for reflection data from diffraction experiments
-
- The experiments from which the reflection data derives
-
-
-
-
-
-
- The h component of the miller index
-
-
-
-
- Describes the dataset
-
-
-
-
- The k component of the miller index
-
-
-
-
- Describes the dataset
-
-
-
-
- The l component of the miller index
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The id of the experiment which resulted in the reflection. If the value
- is greater than 0, the experiments must link to a multi-experiment NXmx
- group
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The id of the reflection. Multiple partials from the same reflection
- should all have the same id
-
-
-
-
-
- Describes the dataset
-
-
-
- Is the reflection entering or exiting the Ewald sphere
-
-
-
-
- Describes the dataset
-
-
-
-
- The detector module on which the reflection was recorded
-
-
-
-
- Describes the dataset
-
-
-
-
-
- Status flags describing the reflection.
-
- This is a bit mask. The bits in the mask follow the convention
- used by DIALS, and have the following names:
-
- === ==========================================
- bit name
- === ==========================================
- 0 ``predicted``
- 1 ``observed``
- 2 ``indexed``
- 3 ``used_in_refinement``
- 4 ``strong``
- 5 ``reference_spot``
- 6 ``dont_integrate``
- 7 ``integrated_sum``
- 8 ``integrated_prf``
- 9 ``integrated``
- 10 ``overloaded``
- 11 ``overlapped``
- 12 ``overlapped_fg``
- 13 ``in_powder_ring``
- 14 ``foreground_includes_bad_pixels``
- 15 ``background_includes_bad_pixels``
- 16 ``includes_bad_pixels``
- 17 ``bad_shoebox``
- 18 ``bad_spot``
- 19 ``used_in_modelling``
- 20 ``centroid_outlier``
- 21 ``failed_during_background_modelling``
- 22 ``failed_during_summation``
- 23 ``failed_during_profile_fitting``
- 24 ``bad_reference``
- === ==========================================
-
-
-
-
-
- Describes the dataset
-
-
-
-
- The resolution of the reflection
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The partiality of the reflection.
- Dividing by this number will inflate the measured
- intensity to the full reflection equivalent.
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The frame on which the bragg peak of the reflection is predicted
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The x position at which the bragg peak of the reflection
- is predicted
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The y position at which the bragg peak of the reflection
- is predicted
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The phi angle at which the bragg peak of the reflection is predicted
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The x pixel position at which the bragg peak of the reflection is
- predicted
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The y pixel position at which the bragg peak of the reflection is
- predicted
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The estimate of the frame at which the central impact of the
- reflection was recorded
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The variance on the estimate of the frame at which the central
- impact of the reflection was recorded
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The estimate of the pixel x position at which the central impact of
- the reflection was recorded
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The variance on the estimate of the pixel x position at which the
- central impact of the reflection was recorded
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The estimate of the pixel y position at which the central impact of
- the reflection was recorded
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The variance on the estimate of the pixel y position at which the
- central impact of the reflection was recorded
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The estimate of the phi angle at which the central impact of the
- reflection was recorded
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The variance on the estimate of the phi angle at which the central
- impact of the reflection was recorded
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The estimate of the x position at which the central
- impact of the reflection was recorded
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The variance on the estimate of the x position at which
- the central impact of the reflection was recorded
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The estimate of the y position at which the central
- impact of the reflection was recorded
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The variance on the estimate of the y position at which
- the central impact of the reflection was recorded
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The bounding box around the recorded recorded reflection.
- Should be an integer array of length 6, where the 6 values
- are pixel positions or frame numbers, as follows:
-
- ===== ===========================
- index meaning
- ===== ===========================
- 0 The lower pixel x position
- 1 The upper pixel x position
- 2 The lower pixel y position
- 3 The upper pixel y position
- 4 The lower frame number
- 5 The upper frame number
- ===== ===========================
-
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The mean background under the reflection peak
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The estimate of the reflection intensity by profile fitting
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The variance on the estimate of the reflection intensity by profile
- fitting
-
-
-
-
-
- Describes the dataset
-
-
-
-
- The estimate of the reflection intensity by summation
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The variance on the estimate of the reflection intensity by
- summation
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The LP correction factor to be applied to the reflection intensities
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- The correlation of the reflection profile with the reference profile
- used in profile fitting
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- An adjacency list specifying the spatial overlaps of reflections. The
- adjacency list is specified using an array data type where the elements
- of the array are the indices of the adjacent overlapped reflection
-
-
- Describes the dataset
-
-
-
-
-
- Polar angle of reflection centroid, following the NeXus simple (spherical polar) coordinate system
-
-
-
-
-
- Describes the dataset
-
-
-
-
-
- Azimuthal angle of reflection centroid, following the NeXus simple (spherical polar) coordinate system
-
-
-
-
-
-
- Describes the dataset
-
+
+ The experiments from which the reflection data derives
+
+
+
+
+
+
+ The h component of the miller index
+
+
+
+
+ Describes the dataset
+
+
+
+
+ The k component of the miller index
+
+
+
+
+ Describes the dataset
+
+
+
+
+ The l component of the miller index
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The id of the experiment which resulted in the reflection. If the value
+ is greater than 0, the experiments must link to a multi-experiment NXmx
+ group
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The id of the reflection. Multiple partials from the same reflection
+ should all have the same id
+
+
+
+
+
+ Describes the dataset
+
+
+
+ Is the reflection entering or exiting the Ewald sphere
+
+
+
+
+ Describes the dataset
+
+
+
+
+ The detector module on which the reflection was recorded
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ Status flags describing the reflection.
+
+ This is a bit mask. The bits in the mask follow the convention
+ used by DIALS, and have the following names:
+
+ === ==========================================
+ bit name
+ === ==========================================
+ 0 ``predicted``
+ 1 ``observed``
+ 2 ``indexed``
+ 3 ``used_in_refinement``
+ 4 ``strong``
+ 5 ``reference_spot``
+ 6 ``dont_integrate``
+ 7 ``integrated_sum``
+ 8 ``integrated_prf``
+ 9 ``integrated``
+ 10 ``overloaded``
+ 11 ``overlapped``
+ 12 ``overlapped_fg``
+ 13 ``in_powder_ring``
+ 14 ``foreground_includes_bad_pixels``
+ 15 ``background_includes_bad_pixels``
+ 16 ``includes_bad_pixels``
+ 17 ``bad_shoebox``
+ 18 ``bad_spot``
+ 19 ``used_in_modelling``
+ 20 ``centroid_outlier``
+ 21 ``failed_during_background_modelling``
+ 22 ``failed_during_summation``
+ 23 ``failed_during_profile_fitting``
+ 24 ``bad_reference``
+ === ==========================================
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+ The resolution of the reflection
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The partiality of the reflection.
+ Dividing by this number will inflate the measured
+ intensity to the full reflection equivalent.
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The frame on which the bragg peak of the reflection is predicted
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The x position at which the bragg peak of the reflection
+ is predicted
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The y position at which the bragg peak of the reflection
+ is predicted
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The phi angle at which the bragg peak of the reflection is predicted
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The x pixel position at which the bragg peak of the reflection is
+ predicted
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The y pixel position at which the bragg peak of the reflection is
+ predicted
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The estimate of the frame at which the central impact of the
+ reflection was recorded
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The variance on the estimate of the frame at which the central
+ impact of the reflection was recorded
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The estimate of the pixel x position at which the central impact of
+ the reflection was recorded
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The variance on the estimate of the pixel x position at which the
+ central impact of the reflection was recorded
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The estimate of the pixel y position at which the central impact of
+ the reflection was recorded
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The variance on the estimate of the pixel y position at which the
+ central impact of the reflection was recorded
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The estimate of the phi angle at which the central impact of the
+ reflection was recorded
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The variance on the estimate of the phi angle at which the central
+ impact of the reflection was recorded
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The estimate of the x position at which the central
+ impact of the reflection was recorded
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The variance on the estimate of the x position at which
+ the central impact of the reflection was recorded
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The estimate of the y position at which the central
+ impact of the reflection was recorded
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The variance on the estimate of the y position at which
+ the central impact of the reflection was recorded
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The bounding box around the recorded recorded reflection.
+ Should be an integer array of length 6, where the 6 values
+ are pixel positions or frame numbers, as follows:
+
+ ===== ===========================
+ index meaning
+ ===== ===========================
+ 0 The lower pixel x position
+ 1 The upper pixel x position
+ 2 The lower pixel y position
+ 3 The upper pixel y position
+ 4 The lower frame number
+ 5 The upper frame number
+ ===== ===========================
+
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The mean background under the reflection peak
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The estimate of the reflection intensity by profile fitting
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The variance on the estimate of the reflection intensity by profile
+ fitting
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+ The estimate of the reflection intensity by summation
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The variance on the estimate of the reflection intensity by
+ summation
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The LP correction factor to be applied to the reflection intensities
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ The correlation of the reflection profile with the reference profile
+ used in profile fitting
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ An adjacency list specifying the spatial overlaps of reflections. The
+ adjacency list is specified using an array data type where the elements
+ of the array are the indices of the adjacent overlapped reflection
+
+
+ Describes the dataset
+
+
+
+
+
+ Polar angle of reflection centroid, following the NeXus simple (spherical polar) coordinate system
+
+
+
+
+
+ Describes the dataset
+
+
+
+
+
+ Azimuthal angle of reflection centroid, following the NeXus simple (spherical polar) coordinate system
+
+
+
+
+
+
+ Describes the dataset
+