Clearly distinguish global and per-run options

[rosswhitfield]

Ref 2694

The options have been separated in the UI between Global and Per Run:

Now when you change an option in the Global part and you select a different file from the file list the option will be persistent.

Short description of the changes:

Long description of the changes:

Check list for the pull request

• I have read the [CONTRIBUTING]
• I have read the [CODE_OF_CONDUCT]
• I have added tests for my changes
• I have updated the documentation accordingly

Check list for the reviewer

• I have read the [CONTRIBUTING]
• I have verified the proposed changes
• best software practices
  • all internal functions have an underbar, as is python standard
  • clearly named variables (better to be verbose in variable names)
  • code comments explaining the intent of code blocks
• All the tests are passing
• The documentation is up to date
• code comments added when explaining intent

Manual test for the reviewer

References

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 34.56%. Comparing base (e7d9302) to head (f01c8ab).

Additional details and impacted files

@@            Coverage Diff             @@
##             next      #77      +/-   ##
==========================================
+ Coverage   32.22%   34.56%   +2.34%     
==========================================
  Files          29       29              
  Lines        6023     6023              
==========================================
+ Hits         1941     2082     +141     
+ Misses       4082     3941     -141     

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[jmborr]

👍 making these class variables

[jmborr]

Everything looks good, and very nice test ❗