Ci jobs (#4)

* added tests and codecov

* moved tests from src code to test code

* added comments

* add NdArray_TestCase

* added slug

* Update README.md

* updated readme links

* remove conda warnings

---------
Co-authored-by: Kyle Ma <maq1@ornl.gov>
Co-authored-by: Patrou, Maria <patroum@ornl.gov>

.github/workflows/actions.yml

@@ -0,0 +1,79 @@
+name: CI
+
+on:
+  workflow_dispatch:
+  pull_request:
+  push:
+    branches: [next, qa]
+    tags: ['v*']
+
+jobs:
+  tests:
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+    steps:
+    - uses: actions/checkout@v4
+    - uses: mamba-org/setup-micromamba@v1
+      with:
+        environment-file: environment.yml
+        cache-environment-key: ${{ runner.os }}-env-${{ hashFiles('**/environment.yml') }}
+        cache-downloads-key: ${{ runner.os }}-downloads-${{ hashFiles('**/environment.yml') }}
+        condarc: |
+          channels:
+            - mcvine
+            - conda-forge
+    - name: pre-commit
+      run: pre-commit run --all-files
+    - name: Install histogram
+      run: python -m pip install -e . --no-deps
+    - name: Run tests
+      run: xvfb-run --server-args="-screen 0 1920x1080x24" -a python -m pytest --cov --cov-report=xml --cov-report=term --cov-config=.coveragerc
+    - name: Upload coverage reports to Codecov
+      uses: codecov/codecov-action@v4
+      with:
+        token: ${{ secrets.CODECOV_TOKEN }}
+        slug: neutrons/histogram-dev
+
+  conda-build:
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+    steps:
+    - uses: actions/checkout@v4
+    - uses: mamba-org/setup-micromamba@v1
+      with:
+        environment-file: environment.yml
+        cache-environment-key: ${{ runner.os }}-env-${{ hashFiles('**/environment.yml') }}
+        cache-downloads-key: ${{ runner.os }}-downloads-${{ hashFiles('**/environment.yml') }}
+        condarc: |
+          channels:
+            - mcvine
+            - conda-forge
+    - name: build python wheel
+      shell: bash -l {0}
+      run: |
+        python -m build --wheel --no-isolation
+    - name: build conda package
+      run: |
+        # set up environment
+        cd conda.recipe
+        echo "versioningit $(versioningit ../)"
+        # build the package
+        CHANNELS="--channel mcvine --channel conda-forge"
+        VERSION=$(versioningit ../) conda mambabuild $CHANNELS --output-folder . .
+        conda verify noarch/histogram*.tar.bz2
+    - name: upload conda package to anaconda
+      shell: bash -l {0}
+      if: startsWith(github.ref, 'refs/tags/v')
+      env:
+        ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_TOKEN }}
+        IS_RC: ${{ contains(github.ref, 'rc') }}
+      run: |
+        # label is main or rc depending on the tag-name
+        CONDA_LABEL="main"
+        if [ "${IS_RC}" = "true" ]; then CONDA_LABEL="rc"; fi
+        echo pushing ${{ github.ref }} with label $CONDA_LABEL
+        anaconda upload --label $CONDA_LABEL conda.recipe/noarch/histogram*.tar.bz2

README.md

@@ -39,5 +39,9 @@ histogram data object
 
     `pytest`
 
+* [Documentation](https://histogram-dev.readthedocs.io/en/latest/)
 
-* [Documentation](http://danse-inelastic.github.io/histogram)
+---
+
+[![CI](https://github.com/neutrons/histogram-dev/actions/workflows/actions.yml/badge.svg?branch=next)](https://github.com/neutrons/histogram-dev/actions/workflows/actions.yml)
+[![codecov](https://codecov.io/gh/neutrons/histogram-dev/graph/badge.svg?token=Z0Y3B6XEWP)](https://codecov.io/gh/neutrons/histogram-dev)

pyproject.toml

@@ -44,16 +44,29 @@ file = "src/histogram/_version.py"
 where = ["src"]
 exclude = ["src/histogram/scripts/Make.mm"]
 
+
+[tool.coverage.run]
+omit = [
+    "src/histogram/_version.py"
+    ]
+source = [
+  "src"
+]
+
 [project.scripts]
 histogram-cli = "histogram.Histogram:main"
 
 # pytest.ini
 [tool.pytest.ini_options]
-norecursedirs = [".svn","_build","ndarray*"] # ignore tests in ndarray due to missing stdVector module not found
+
+norecursedirs = [".svn","_build"] # ignore tests in ndarray due to missing stdVector module not found
+
 testpaths =[
     "tests"
 ]
 python_files = ["*_TestCase.py","histogramTest_*.py"] #manually run python alltests.py will also return 145 tests
 filterwarnings =[
-    "ignore: Matplotlib is currently using ps, which is a non-GUI backend, so cannot show the figure."
+
+    "ignore: Matplotlib is currently using ps, which is a non-GUI backend, so cannot show the figure.",
+    "ignore: FigureCanvasPS is non-interactive, and thus cannot be shown"
 ]