Using Celltrek on non-matching data ST and SC data.

[Dillon214]

Hello Celltrek devs,

I would like to map cells from a single-cell dataset which only includes one cell type to a spatial transcriptomics dataset which includes multiple cell types. Is this possible, and if so, is there anything I should keep in mind while doing so?

If this is not possible, are there any work-arounds, such as merging the single cell dataset with a reference dataset which includes additional cell types I would expect?

sincerely,
Dillon