added temporary way of getting rid of AAV5 in fig 4.

naobservatory · Nov 27, 2023 · f08b3ec · f08b3ec
1 parent 28c2183
commit f08b3ec
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/figures/composite_fig_4.py b/figures/composite_fig_4.py
@@ -311,6 +311,9 @@ def start() -> None:
     input_df = pd.read_csv(parent_dir / "input.tsv", sep="\t")
     input_df["study"] = input_df.study.map(study_name)
     # TODO: Store these in the files instead?
+    fits_df = fits_df[fits_df["pathogen"] != "aav5"]  # FIX ME
+    input_df = input_df[input_df["pathogen"] != "aav5"]  # FIX ME
+
     input_df["nucleic_acid"] = input_df.pathogen.map(nucleic_acid)
     input_df["selection_round"] = input_df.pathogen.map(selection_round)
     input_df["observed?"] = input_df.viral_reads > 0