muon-galaxy-tools

Tools for Muon Galaxy

Run/test tools locally

These tools are developed using Planemo and can be run and tested locally using Planemo without installing Galaxy.

Create a virtualenv and install Planemo:

$ virtualenv .venv
$ . .venv/bin/activate
$ pip install planemo

Clone this repository, then go into the muon-galaxy-tools folder.

To run the tools:

$ planemo serve

To test the tools:

$ planemo test

Contributing

To get started, see the Galaxy tool development tutorial.

When writing tools, follow the Intergalactic Utilities Commission tool standards.

Use Planemo to lint and test tools; see the Planemo documentation for more information.