Test against conda DOLFINx releases #107
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test against conda DOLFINx releases | |
| on: | |
| schedule: | |
| - cron: "0 3 * * *" | |
| workflow_dispatch: | |
| jobs: | |
| generate-matrix: | |
| runs-on: ubuntu-latest | |
| env: | |
| MATRIX_JSON_FILE: "matrix.json" | |
| MATRIX_SCRIPT_FILE: "matrix.sh" | |
| PETSC_SCALAR_TYPES: "real complex" | |
| outputs: | |
| matrix: ${{ steps.store-matrix.outputs.matrix }} | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Prepare script to generate json file | |
| run: | | |
| cat << EOF > ${MATRIX_SCRIPT_FILE} | |
| PETSC_SCALAR_TYPES_ARRAY=(${PETSC_SCALAR_TYPES}) | |
| DOLFINX_VERSION="\${1}" | |
| CPP_WRAPPER_LIBRARY="\${2}" | |
| SUPPORTED_PYTHON_VERSIONS=(\${@:3}) | |
| for PYTHON_VERSION in "\${SUPPORTED_PYTHON_VERSIONS[@]}"; do | |
| for PETSC_SCALAR_TYPE in "\${PETSC_SCALAR_TYPES_ARRAY[@]}"; do | |
| echo -e "\t\t{" >> ${MATRIX_JSON_FILE} | |
| echo -e "\t\t\t\"dolfinx_version\": \"\${DOLFINX_VERSION}\"," >> ${MATRIX_JSON_FILE} | |
| echo -e "\t\t\t\"python_version\": \"\${PYTHON_VERSION}\"," >> ${MATRIX_JSON_FILE} | |
| echo -e "\t\t\t\"petsc_scalar_type\": \"\${PETSC_SCALAR_TYPE}\"," >> ${MATRIX_JSON_FILE} | |
| echo -e "\t\t\t\"cpp_wrapper_library\": \"\${CPP_WRAPPER_LIBRARY}\"" >> ${MATRIX_JSON_FILE} | |
| echo -e "\t\t}," >> ${MATRIX_JSON_FILE} | |
| done | |
| done | |
| EOF | |
| - name: Initialize matrix json file | |
| run: | | |
| touch ${MATRIX_JSON_FILE} | |
| echo -e "{" >> ${MATRIX_JSON_FILE} | |
| echo -e "\t\"include\": [" >> ${MATRIX_JSON_FILE} | |
| - name: Add dolfinx 0.4.1 to matrix json file | |
| run: | | |
| DOLFINX_VERSION="0.4.1" | |
| CPP_WRAPPER_LIBRARY="pybind11" | |
| SUPPORTED_PYTHON_VERSIONS=("3.9") # 3.10 is also supported, but is incompatible with nbvalx | |
| bash ${MATRIX_SCRIPT_FILE} ${DOLFINX_VERSION} ${CPP_WRAPPER_LIBRARY} ${SUPPORTED_PYTHON_VERSIONS[@]} | |
| - name: Add dolfinx 0.5.2 to matrix json file | |
| run: | | |
| DOLFINX_VERSION="0.5.2" | |
| CPP_WRAPPER_LIBRARY="pybind11" | |
| SUPPORTED_PYTHON_VERSIONS=("3.10") # 3.9 is also supported, but is incompatible with nbvalx | |
| bash ${MATRIX_SCRIPT_FILE} ${DOLFINX_VERSION} ${CPP_WRAPPER_LIBRARY} ${SUPPORTED_PYTHON_VERSIONS[@]} | |
| - name: Add dolfinx 0.6.0 to matrix json file | |
| run: | | |
| # dolfinx v0.6.0 is currently untested, because both python 3.9 and 3.10 have random segfaults | |
| - name: Add dolfinx 0.7.0 to matrix json file | |
| run: | | |
| DOLFINX_VERSION="0.7.0" | |
| CPP_WRAPPER_LIBRARY="pybind11" | |
| SUPPORTED_PYTHON_VERSIONS=("3.10" "3.11") # 3.9 is also supported, but is incompatible with nbvalx | |
| bash ${MATRIX_SCRIPT_FILE} ${DOLFINX_VERSION} ${CPP_WRAPPER_LIBRARY} ${SUPPORTED_PYTHON_VERSIONS[@]} | |
| - name: Add dolfinx 0.7.1 to matrix json file | |
| run: | | |
| DOLFINX_VERSION="0.7.1" | |
| CPP_WRAPPER_LIBRARY="pybind11" | |
| SUPPORTED_PYTHON_VERSIONS=("3.10" "3.11") # 3.9 is also supported, but is incompatible with nbvalx | |
| bash ${MATRIX_SCRIPT_FILE} ${DOLFINX_VERSION} ${CPP_WRAPPER_LIBRARY} ${SUPPORTED_PYTHON_VERSIONS[@]} | |
| - name: Add dolfinx 0.7.2 to matrix json file | |
| run: | | |
| DOLFINX_VERSION="0.7.2" | |
| CPP_WRAPPER_LIBRARY="pybind11" | |
| SUPPORTED_PYTHON_VERSIONS=("3.10" "3.11" "3.12") # 3.9 is also supported, but is incompatible with nbvalx | |
| bash ${MATRIX_SCRIPT_FILE} ${DOLFINX_VERSION} ${CPP_WRAPPER_LIBRARY} ${SUPPORTED_PYTHON_VERSIONS[@]} | |
| - name: Add dolfinx 0.7.3 to matrix json file | |
| run: | | |
| DOLFINX_VERSION="0.7.3" | |
| CPP_WRAPPER_LIBRARY="pybind11" | |
| SUPPORTED_PYTHON_VERSIONS=("3.10" "3.11" "3.12") # 3.9 is also supported, but is incompatible with nbvalx | |
| bash ${MATRIX_SCRIPT_FILE} ${DOLFINX_VERSION} ${CPP_WRAPPER_LIBRARY} ${SUPPORTED_PYTHON_VERSIONS[@]} | |
| - name: Add dolfinx 0.8.0 to matrix json file | |
| run: | | |
| DOLFINX_VERSION="0.8.0" | |
| CPP_WRAPPER_LIBRARY="nanobind" | |
| SUPPORTED_PYTHON_VERSIONS=("3.10" "3.11" "3.12") # 3.9 is also supported, but is incompatible with nbvalx | |
| bash ${MATRIX_SCRIPT_FILE} ${DOLFINX_VERSION} ${CPP_WRAPPER_LIBRARY} ${SUPPORTED_PYTHON_VERSIONS[@]} | |
| - name: Add dolfinx 0.9.0 to matrix json file | |
| run: | | |
| DOLFINX_VERSION="0.9.0" | |
| CPP_WRAPPER_LIBRARY="nanobind" | |
| SUPPORTED_PYTHON_VERSIONS=("3.10" "3.11" "3.12") # 3.9 is also supported, but is incompatible with nbvalx. 3.13 is also supported, but some downstream packages are still missing. | |
| bash ${MATRIX_SCRIPT_FILE} ${DOLFINX_VERSION} ${CPP_WRAPPER_LIBRARY} ${SUPPORTED_PYTHON_VERSIONS[@]} | |
| - name: Finalize matrix json file | |
| run: | | |
| sed -i '$s/,//' ${MATRIX_JSON_FILE} | |
| echo -e "\t]" >> ${MATRIX_JSON_FILE} | |
| echo -e "}" >> ${MATRIX_JSON_FILE} | |
| - name: Display matrix json file | |
| run: | | |
| cat ${MATRIX_JSON_FILE} | |
| - name: Store matrix json file content in the output variable | |
| id: store-matrix | |
| run: | | |
| echo "matrix=$(cat ${MATRIX_JSON_FILE} | tr -d ' \t\n\r')" >> ${GITHUB_OUTPUT} | |
| test: | |
| runs-on: ubuntu-latest | |
| needs: generate-matrix | |
| strategy: | |
| matrix: ${{ fromJson(needs.generate-matrix.outputs.matrix) }} | |
| fail-fast: false | |
| name: test (v${{ matrix.dolfinx_version }}, py${{ matrix.python_version }}, ${{ matrix.petsc_scalar_type }}) | |
| # This is necessary to ensure conda environment is activated in every step. | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: dolfinx-v${{ matrix.dolfinx_version }} | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: testenv | |
| python-version: ${{ matrix.python_version }} | |
| - name: Ensure python version correctness | |
| run: | | |
| EXPECTED_PYTHON_VERSION=${{ matrix.python_version }} | |
| ACTUAL_PYTHON_VERSION=$(python3 -c 'import sys; print("{}.{}".format(sys.version_info.major, sys.version_info.minor))') | |
| if [[ "${EXPECTED_PYTHON_VERSION}" != "${ACTUAL_PYTHON_VERSION}" ]]; then | |
| echo "Invalid python version: expected ${EXPECTED_PYTHON_VERSION}, got ${ACTUAL_PYTHON_VERSION}" | |
| exit 1 | |
| fi | |
| - name: Install DOLFINx | |
| run: | | |
| conda install -c conda-forge fenics-dolfinx=${{ matrix.dolfinx_version }} mpich petsc=*=${{ matrix.petsc_scalar_type }}* | |
| - name: Install multiphenicsx core dependencies | |
| run: | | |
| CPP_WRAPPER_LIBRARY=${{ matrix.cpp_wrapper_library }} | |
| if [[ "${CPP_WRAPPER_LIBRARY}" == "pybind11" ]]; then | |
| conda install -c conda-forge cppimport gxx pybind11 | |
| else | |
| conda install -c conda-forge cmake gxx nanobind ninja scikit-build-core wheel | |
| fi | |
| - name: Install multiphenicsx test dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt install xorg # for gmsh, which will be pip install-ed by multiphenicsx | |
| conda install -c conda-forge jupyterlab scipy sympy | |
| - name: Install multiphenicsx | |
| run: | | |
| CPP_WRAPPER_LIBRARY=${{ matrix.cpp_wrapper_library }} | |
| if [[ "${CPP_WRAPPER_LIBRARY}" == "pybind11" ]]; then | |
| python3 -m pip install .[tests,tutorials] | |
| else | |
| python3 -m pip install --check-build-dependencies --no-build-isolation .[tests,tutorials] | |
| fi | |
| - name: Remove source directory to ensure that package from installation directory is used | |
| run: | | |
| rm -rf multiphenicsx | |
| - name: Run unit tests (serial) | |
| run: | | |
| python3 -m pytest tests/unit | |
| - name: Run tutorials (serial) | |
| run: | | |
| python3 -m pytest tutorials | |
| - name: Upload tutorials logs as an artifact in case of failure | |
| if: failure() || cancelled() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: "tutorials-logs-${{ matrix.dolfinx_version }}-${{ matrix.petsc_scalar_type }}-${{ matrix.python_version }}" | |
| path: | | |
| tutorials/**/.ipynb_pytest/**/*.log* | |
| include-hidden-files: true | |
| warn: | |
| runs-on: ubuntu-latest | |
| if: github.repository == 'multiphenics/multiphenicsx' && github.ref == 'refs/heads/main' && github.event_name == 'schedule' | |
| steps: | |
| - name: Warn if scheduled workflow is about to be disabled | |
| uses: fem-on-colab/warn-workflow-about-to-be-disabled-action@main | |
| with: | |
| workflow-filename: conda_against_releases.yml | |
| days-elapsed: 55 |