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Output check of contig orientation and reading frame #112

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bmichanderson opened this issue Mar 2, 2023 · 0 comments
Open

Output check of contig orientation and reading frame #112

bmichanderson opened this issue Mar 2, 2023 · 0 comments

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@bmichanderson
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It might be handy (necessary?) to include a check of reading frame and direction for contigs output from HybPiper to ensure they do not need to reverse complemented in downstream alignments. This could be coupled with checks for internal stop codons (#106 ; earlier in the pipeline?).
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