You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardexpand all lines: docs/docs/preprocessor/preprocess.md
+1-1
Original file line number
Diff line number
Diff line change
@@ -20,7 +20,7 @@ The `preprocess` command of `preprocessor/cellstar_preprocessor/preprocess.py` s
20
20
|`--working-folder`| path to directory where temporary files will be stored during the build process |
21
21
|`--db-path`| path to folder with database |
22
22
|`--input-path`| Path to input file. Should be provided for each input file separately (see examples) |
23
-
|`--input-kind`| Kind of input file. One of the following: <code>[map\|sff\|omezarr\|mask\|application_specific_segmentation\|custom_annotations\|nii_volume\|nii_segmentation\|geometric_segmentation\|star_file_geometric_segmentation\|ometiff_image\|ometiff_segmentation\|extra_data]</code>. See examples for more details. |
23
+
|`--input-kind`| Kind of input file. One of the following: <code>[map\|sff\|omezarr\|mask\|application_specific_segmentation\|custom_annotations\|nii_volume\|nii_segmentation\|geometric_segmentation\|ometiff_image\|ometiff_segmentation\|extra_data]</code>. See examples for more details. |
24
24
25
25
26
26
As one can see, `preprocess` command has two possible modes for the `preprocess`: `add` and `extend`.
0 commit comments