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MokaGuys

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  1. seglh-cnv seglh-cnv Public

    Scripts and docker images to run CNV pipelines

    R 3 1

  2. dnanexus_swiss_army_SNP_bcftools_filter dnanexus_swiss_army_SNP_bcftools_filter Public

    This repository contains the commands executed by the swiss army knife app (v3.0.0) to format a VCF according to GeL specifications for SNP ID checks

    Shell 2

  3. automate_demultiplex automate_demultiplex Public

    Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics

    Python 1 2

  4. dnanexus_ED_cnv_calling dnanexus_ED_cnv_calling Public

    Performs CNV calling using ExomeDepth.

    Shell 1

  5. seglh-naming seglh-naming Public

    SEGLH naming schemes

    Python 1 1

  6. WGS_puberty_CNVs WGS_puberty_CNVs Public

    Scripts for filtering WGS Puberty SV data

    1

Repositories

Showing 10 of 192 repositories
  • automate_demultiplex Public

    Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics

    moka-guys/automate_demultiplex’s past year of commit activity
    Python 1 2 14 4 Updated Feb 1, 2025
  • SCIP_DNAnexus Public

    DNAnexus app which runs the SCIP python script in a docker container, predicting fetal sickle cell status and outputting an HTML report

    moka-guys/SCIP_DNAnexus’s past year of commit activity
    0 0 0 0 Updated Jan 31, 2025
  • SCIP_preprocessing Public

    Preprocessing of data for SCIP runs, from FASTQs to mpileup files

    moka-guys/SCIP_preprocessing’s past year of commit activity
    0 0 0 0 Updated Jan 31, 2025
  • SCIP Public
    moka-guys/SCIP’s past year of commit activity
    0 0 0 0 Updated Jan 31, 2025
  • dnanexus_ED_readcount_analysis Public

    This app calculates the readcount for a batch of samples for CNV calling using ExomeDepth.

    moka-guys/dnanexus_ED_readcount_analysis’s past year of commit activity
    Shell 0 0 2 0 Updated Jan 30, 2025
  • mokabed Public

    Generates BED files

    moka-guys/mokabed’s past year of commit activity
    Python 0 0 13 0 Updated Jan 29, 2025
  • seglh-naming Public

    SEGLH naming schemes

    moka-guys/seglh-naming’s past year of commit activity
    Python 1 Apache-2.0 1 2 1 Updated Jan 29, 2025
  • SNP_haplotyper Public

    BASHer (BiAllellic SNP Haplotyper). This script filters and classifies SNPs for SNP Array data

    moka-guys/SNP_haplotyper’s past year of commit activity
    Python 0 0 1 4 Updated Jan 26, 2025
  • dnanexus_ED_cnv_calling Public

    Performs CNV calling using ExomeDepth.

    moka-guys/dnanexus_ED_cnv_calling’s past year of commit activity
    Shell 1 0 4 1 Updated Jan 26, 2025
  • bedmakerGUI Public
    moka-guys/bedmakerGUI’s past year of commit activity
    Python 0 0 1 0 Updated Dec 19, 2024

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