v10.1.0

Caution

Not recommended for use because certain artifacts were not built from the latest source files prior to release

Use version 10.1.2 instead.

What's Changed

As usual, this PR includes lots of changes to maintenance and QC code

The main changes to the schema itself are changes to the names and contents of enumerations and permissible values, and changes to descriptions and other textual annotations on other elements.

• remove legacy files from assets by @turbomam in #1718
• Try to ensure badge appears up-to-date by @eecavanna in #1732
• wipe all traces of "has unit" etc by @turbomam in #1733
• Alternatives for relationgraph, for generating materialized visualization by @turbomam in #1706
• 1731 update extract study command to search legacy ids by @mbthornton-lbl in #1737
• Update database tools add search for orphaned data objects by @mbthornton-lbl in #1699
• referential integrity checking of napa squads mongodb via sparql in fuseki by @turbomam in #1738
• better differentiation between pure-export and get-study-id-from-filename by @turbomam in #1746
• issue 598 add funding sources character limit by @brynnz22 in #1748
• 1767 map jgi template to nmdc slots add alias by @mslarae13 in #1768
• Rename enums per naming standards by @Shalsh23 in #1001
• Refrain from trying to read from non-existent collection by @eecavanna in #1785
• 1783 pyprojecttoml and projectmakefile entries for srcscriptsschema view relation graphpy by @turbomam in #1786
• rdf/owl targets by @turbomam in #1788
• 1747 improve logging for database tools extract-study warn for missing data objects by @mbthornton-lbl in #1770
• Add metagenomics_long_read PV to AnalysisTypeEnum by @pkalita-lbl in #1803
• Configure GHA to check docs for broken links by @eecavanna in #1796
• Update emsl_project_identifiers description by @mslarae13 in #1753
• add new MAGs workflow output files by @chienchi in #1791
• Update dna/rna plate position regex patterns to allow A10, A11, H10, H11 by @pkalita-lbl in #1766
• Update README.md by @cmungall in #1765
• added enum/pv tempalte and result by @turbomam in #1805
• Update EMSL sample type enum by @mslarae13 in #1799
• for v10.1 with generateds by @turbomam in #1810
• for v10.1 with generateds and updated version strings by @turbomam in #1811

New Contributors

• @chienchi made their first contribution in #1791

Full Changelog: v10.0.0...v10.1.0