v10.0.0

What's Changed

• Simplify migrator creation and usage by @eecavanna in #1457
• Indicate Apache Jena version number used by repo maintainer by @eecavanna in #1610
• Implement a container-based development environment for nmdc-schema by @eecavanna in #1605
• 1338 add slots infiltration 1 infiltration 2 infiltration notes by @bmeluch in #1483
• launching and config updates by @turbomam in #1615
• 1609 implement tool to extract all related entities for a study by @mbthornton-lbl in #1612
• Add boxes around notes using mkdocs material theme by @sujaypatil96 in #1631
• mkdocs need to look for javascripts/tablesort.js in docs/ directory by @sujaypatil96 in #1632
• Refactor to simplify API client and to use the nmdcschema GET endpoint by @mbthornton-lbl in #1630
• Add configuration parameters for Mermaid UML diagram inclusion/exclusion by @sujaypatil96 in #1625
• 1633 get study related records aka srcscripts nmdc_database_tools.py outputd path not working correctly by @mbthornton-lbl in #1641
• retrieve study and related records and then validate by @turbomam in #1645
• v7.8.0 is most appropriate for validating records in the napa mongodb by @turbomam in #1650
  • v8.0.0 understands the current prefix casing better
• Update extract-study to get schema version by @mbthornton-lbl in #1649
• Bump jinja2 from 3.1.2 to 3.1.3 by @dependabot in #1647
• no quick test; validate against v8.0.0 by @turbomam in #1653
• remove schema version from output and log file names by @mbthornton-lbl in #1654
• remove 404 style guide link by @turbomam in #1658
• filtered-status target by @turbomam in #1660
• tdb2.tdbloader and tdb2.tdbquery for get-study-related-records by @turbomam in #1662
• QC Report branch with test refinement by @turbomam in #1428
• Make FunctionalAnnotationAggMember slots required by @aclum in #1309
• Add note about host.docker.internal hostname by @eecavanna in #1622
• Add Fuseki to standard development environment (Docker Compose stack) by @eecavanna in #1686
• Delete quality_control_report field from Extraction in more circumstances by @eecavanna in #1682
• Fix issue where app container cannot run Java (in amd64 host environment) by @eecavanna in #1689
• highly automated fuseki load by @turbomam in #1692
• report for berkeley-schema-fy24 PR 66 by @turbomam in #1683
• Implement and integrate adapters for data migrations by @eecavanna in #1624
• move lists of yq commands from project.Makefile target into a separate files by @turbomam in #1696
• Update CODE_OF_CONDUCT.md regarding novelty by @turbomam in #1316
• Update CODE_OF_CONDUCT.md by @shreddd in #1698
• better-fuseki-comments-in-makefile by @turbomam in #1697
• Update migration_recursion script according to new Migrator design by @eecavanna in #1705
• in prep for next release by @turbomam in #1704
• pure-export migration-recursion and validation work by @turbomam in #1707
• remove legacy fuseki/tdb2 targets by @turbomam in #1712
• remove legacy build-datafile-from-api-requests targets by @turbomam in #1713
• remove experimental methods for getting Neon data from 3rd parties by @turbomam in #1714
• mixs.yaml regen requires curated assets/import_mixs_slots_regardless.tsv by @turbomam in #1716

Full Changelog: v9.3.2...v10.0.0