diff --git a/nmdc_schema/nmdc.py b/nmdc_schema/nmdc.py index 65019a873c..04d5217367 100644 --- a/nmdc_schema/nmdc.py +++ b/nmdc_schema/nmdc.py @@ -1,5 +1,5 @@ # Auto generated from nmdc.yaml by pythongen.py version: 0.0.1 -# Generation date: 2023-11-27T16:27:08 +# Generation date: 2023-11-28T21:30:41 # Schema: NMDC # # id: https://w3id.org/nmdc/nmdc @@ -31,7 +31,7 @@ from linkml_runtime.utils.metamodelcore import Bool, URIorCURIE metamodel_version = "1.7.0" -version = "v9.1.0" +version = "v9.2.0" # Overwrite dataclasses _init_fn to add **kwargs in __init__ dataclasses._init_fn = dataclasses_init_fn_with_kwargs @@ -121,7 +121,7 @@ # Types class Bytes(int): """ An integer value that corresponds to a size in bytes """ - type_class_uri = XSD.long + type_class_uri = XSD["long"] type_class_curie = "xsd:long" type_name = "bytes" type_model_uri = NMDC.Bytes @@ -129,7 +129,7 @@ class Bytes(int): class DecimalDegree(float): """ A decimal degree expresses latitude or longitude as decimal fractions. """ - type_class_uri = XSD.decimal + type_class_uri = XSD["decimal"] type_class_curie = "xsd:decimal" type_name = "decimal degree" type_model_uri = NMDC.DecimalDegree @@ -137,14 +137,14 @@ class DecimalDegree(float): class LanguageCode(str): """ A language code conforming to ISO_639-1 """ - type_class_uri = XSD.language + type_class_uri = XSD["language"] type_class_curie = "xsd:language" type_name = "language code" type_model_uri = NMDC.LanguageCode class Unit(str): - type_class_uri = XSD.string + type_class_uri = XSD["string"] type_class_curie = "xsd:string" type_name = "unit" type_model_uri = NMDC.Unit @@ -152,7 +152,7 @@ class Unit(str): class ExternalIdentifier(Uriorcurie): """ A CURIE representing an external identifier """ - type_class_uri = XSD.anyURI + type_class_uri = XSD["anyURI"] type_class_curie = "xsd:anyURI" type_name = "external_identifier" type_model_uri = NMDC.ExternalIdentifier @@ -335,7 +335,7 @@ class NomAnalysisActivityId(WorkflowExecutionActivityId): class FunctionalAnnotationAggMember(YAMLRoot): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.FunctionalAnnotationAggMember + class_class_uri: ClassVar[URIRef] = NMDC["FunctionalAnnotationAggMember"] class_class_curie: ClassVar[str] = "nmdc:FunctionalAnnotationAggMember" class_name: ClassVar[str] = "FunctionalAnnotationAggMember" class_model_uri: ClassVar[URIRef] = NMDC.FunctionalAnnotationAggMember @@ -367,7 +367,7 @@ class Database(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Database + class_class_uri: ClassVar[URIRef] = NMDC["Database"] class_class_curie: ClassVar[str] = "nmdc:Database" class_name: ClassVar[str] = "Database" class_model_uri: ClassVar[URIRef] = NMDC.Database @@ -480,7 +480,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class Protocol(YAMLRoot): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Protocol + class_class_uri: ClassVar[URIRef] = NMDC["Protocol"] class_class_curie: ClassVar[str] = "nmdc:Protocol" class_name: ClassVar[str] = "Protocol" class_model_uri: ClassVar[URIRef] = NMDC.Protocol @@ -502,7 +502,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class QualityControlReport(YAMLRoot): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.QualityControlReport + class_class_uri: ClassVar[URIRef] = NMDC["QualityControlReport"] class_class_curie: ClassVar[str] = "nmdc:QualityControlReport" class_name: ClassVar[str] = "QualityControlReport" class_model_uri: ClassVar[URIRef] = NMDC.QualityControlReport @@ -528,7 +528,7 @@ class Doi(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Doi + class_class_uri: ClassVar[URIRef] = NMDC["Doi"] class_class_curie: ClassVar[str] = "nmdc:Doi" class_name: ClassVar[str] = "Doi" class_model_uri: ClassVar[URIRef] = NMDC.Doi @@ -564,7 +564,7 @@ class CreditAssociation(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = PROV.Association + class_class_uri: ClassVar[URIRef] = PROV["Association"] class_class_curie: ClassVar[str] = "prov:Association" class_name: ClassVar[str] = "CreditAssociation" class_model_uri: ClassVar[URIRef] = NMDC.CreditAssociation @@ -598,7 +598,7 @@ class GenomeFeature(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.GenomeFeature + class_class_uri: ClassVar[URIRef] = NMDC["GenomeFeature"] class_class_curie: ClassVar[str] = "nmdc:GenomeFeature" class_name: ClassVar[str] = "GenomeFeature" class_model_uri: ClassVar[URIRef] = NMDC.GenomeFeature @@ -653,7 +653,7 @@ class ReactionParticipant(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ReactionParticipant + class_class_uri: ClassVar[URIRef] = NMDC["ReactionParticipant"] class_class_curie: ClassVar[str] = "nmdc:ReactionParticipant" class_name: ClassVar[str] = "ReactionParticipant" class_model_uri: ClassVar[URIRef] = NMDC.ReactionParticipant @@ -681,7 +681,7 @@ class FunctionalAnnotation(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.FunctionalAnnotation + class_class_uri: ClassVar[URIRef] = NMDC["FunctionalAnnotation"] class_class_curie: ClassVar[str] = "nmdc:FunctionalAnnotation" class_name: ClassVar[str] = "FunctionalAnnotation" class_model_uri: ClassVar[URIRef] = NMDC.FunctionalAnnotation @@ -714,7 +714,7 @@ class NamedThing(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.NamedThing + class_class_uri: ClassVar[URIRef] = NMDC["NamedThing"] class_class_curie: ClassVar[str] = "nmdc:NamedThing" class_name: ClassVar[str] = "NamedThing" class_model_uri: ClassVar[URIRef] = NMDC.NamedThing @@ -751,7 +751,7 @@ class DataObject(NamedThing): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.DataObject + class_class_uri: ClassVar[URIRef] = NMDC["DataObject"] class_class_curie: ClassVar[str] = "nmdc:DataObject" class_name: ClassVar[str] = "DataObject" class_model_uri: ClassVar[URIRef] = NMDC.DataObject @@ -815,7 +815,7 @@ class Study(NamedThing): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Study + class_class_uri: ClassVar[URIRef] = NMDC["Study"] class_class_curie: ClassVar[str] = "nmdc:Study" class_name: ClassVar[str] = "Study" class_model_uri: ClassVar[URIRef] = NMDC.Study @@ -983,7 +983,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class InstrumentMixin(YAMLRoot): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.InstrumentMixin + class_class_uri: ClassVar[URIRef] = NMDC["InstrumentMixin"] class_class_curie: ClassVar[str] = "nmdc:InstrumentMixin" class_name: ClassVar[str] = "InstrumentMixin" class_model_uri: ClassVar[URIRef] = NMDC.InstrumentMixin @@ -1012,7 +1012,7 @@ class DataGeneratingInstrument(NamedThing): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.DataGeneratingInstrument + class_class_uri: ClassVar[URIRef] = NMDC["DataGeneratingInstrument"] class_class_curie: ClassVar[str] = "nmdc:DataGeneratingInstrument" class_name: ClassVar[str] = "DataGeneratingInstrument" class_model_uri: ClassVar[URIRef] = NMDC.DataGeneratingInstrument @@ -1047,7 +1047,7 @@ class AnonymousInstrument(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.AnonymousInstrument + class_class_uri: ClassVar[URIRef] = NMDC["AnonymousInstrument"] class_class_curie: ClassVar[str] = "nmdc:AnonymousInstrument" class_name: ClassVar[str] = "AnonymousInstrument" class_model_uri: ClassVar[URIRef] = NMDC.AnonymousInstrument @@ -1073,7 +1073,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MaterialEntity(NamedThing): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MaterialEntity + class_class_uri: ClassVar[URIRef] = NMDC["MaterialEntity"] class_class_curie: ClassVar[str] = "nmdc:MaterialEntity" class_name: ClassVar[str] = "MaterialEntity" class_model_uri: ClassVar[URIRef] = NMDC.MaterialEntity @@ -1087,7 +1087,7 @@ class Biosample(MaterialEntity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Biosample + class_class_uri: ClassVar[URIRef] = NMDC["Biosample"] class_class_curie: ClassVar[str] = "nmdc:Biosample" class_name: ClassVar[str] = "Biosample" class_model_uri: ClassVar[URIRef] = NMDC.Biosample @@ -3666,7 +3666,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class ProcessedSample(MaterialEntity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ProcessedSample + class_class_uri: ClassVar[URIRef] = NMDC["ProcessedSample"] class_class_curie: ClassVar[str] = "nmdc:ProcessedSample" class_name: ClassVar[str] = "ProcessedSample" class_model_uri: ClassVar[URIRef] = NMDC.ProcessedSample @@ -3703,7 +3703,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class AnalyticalSample(MaterialEntity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.AnalyticalSample + class_class_uri: ClassVar[URIRef] = NMDC["AnalyticalSample"] class_class_curie: ClassVar[str] = "nmdc:AnalyticalSample" class_name: ClassVar[str] = "AnalyticalSample" class_model_uri: ClassVar[URIRef] = NMDC.AnalyticalSample @@ -3723,7 +3723,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class Site(MaterialEntity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Site + class_class_uri: ClassVar[URIRef] = NMDC["Site"] class_class_curie: ClassVar[str] = "nmdc:Site" class_name: ClassVar[str] = "Site" class_model_uri: ClassVar[URIRef] = NMDC.Site @@ -3746,7 +3746,7 @@ class FieldResearchSite(Site): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.FieldResearchSite + class_class_uri: ClassVar[URIRef] = NMDC["FieldResearchSite"] class_class_curie: ClassVar[str] = "nmdc:FieldResearchSite" class_name: ClassVar[str] = "FieldResearchSite" class_model_uri: ClassVar[URIRef] = NMDC.FieldResearchSite @@ -3865,7 +3865,7 @@ def __new__(cls, *args, **kwargs): class CollectingBiosamplesFromSite(PlannedProcess): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.CollectingBiosamplesFromSite + class_class_uri: ClassVar[URIRef] = NMDC["CollectingBiosamplesFromSite"] class_class_curie: ClassVar[str] = "nmdc:CollectingBiosamplesFromSite" class_name: ClassVar[str] = "CollectingBiosamplesFromSite" class_model_uri: ClassVar[URIRef] = NMDC.CollectingBiosamplesFromSite @@ -3904,7 +3904,7 @@ class BiosampleProcessing(PlannedProcess): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.BiosampleProcessing + class_class_uri: ClassVar[URIRef] = NMDC["BiosampleProcessing"] class_class_curie: ClassVar[str] = "nmdc:BiosampleProcessing" class_name: ClassVar[str] = "BiosampleProcessing" class_model_uri: ClassVar[URIRef] = NMDC.BiosampleProcessing @@ -3933,7 +3933,7 @@ class Pooling(BiosampleProcessing): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Pooling + class_class_uri: ClassVar[URIRef] = NMDC["Pooling"] class_class_curie: ClassVar[str] = "nmdc:Pooling" class_name: ClassVar[str] = "Pooling" class_model_uri: ClassVar[URIRef] = NMDC.Pooling @@ -3967,7 +3967,7 @@ class Extraction(BiosampleProcessing): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Extraction + class_class_uri: ClassVar[URIRef] = NMDC["Extraction"] class_class_curie: ClassVar[str] = "nmdc:Extraction" class_name: ClassVar[str] = "Extraction" class_model_uri: ClassVar[URIRef] = NMDC.Extraction @@ -4026,7 +4026,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class LibraryPreparation(BiosampleProcessing): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.LibraryPreparation + class_class_uri: ClassVar[URIRef] = NMDC["LibraryPreparation"] class_class_curie: ClassVar[str] = "nmdc:LibraryPreparation" class_name: ClassVar[str] = "LibraryPreparation" class_model_uri: ClassVar[URIRef] = NMDC.LibraryPreparation @@ -4080,7 +4080,7 @@ class SubSamplingProcess(PlannedProcess): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.SubSamplingProcess + class_class_uri: ClassVar[URIRef] = NMDC["SubSamplingProcess"] class_class_curie: ClassVar[str] = "nmdc:SubSamplingProcess" class_name: ClassVar[str] = "SubSamplingProcess" class_model_uri: ClassVar[URIRef] = NMDC.SubSamplingProcess @@ -4134,7 +4134,7 @@ class MixingProcess(PlannedProcess): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MixingProcess + class_class_uri: ClassVar[URIRef] = NMDC["MixingProcess"] class_class_curie: ClassVar[str] = "nmdc:MixingProcess" class_name: ClassVar[str] = "MixingProcess" class_model_uri: ClassVar[URIRef] = NMDC.MixingProcess @@ -4178,7 +4178,7 @@ class FiltrationProcess(PlannedProcess): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.FiltrationProcess + class_class_uri: ClassVar[URIRef] = NMDC["FiltrationProcess"] class_class_curie: ClassVar[str] = "nmdc:FiltrationProcess" class_name: ClassVar[str] = "FiltrationProcess" class_model_uri: ClassVar[URIRef] = NMDC.FiltrationProcess @@ -4240,7 +4240,7 @@ class OmicsProcessing(PlannedProcess): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.OmicsProcessing + class_class_uri: ClassVar[URIRef] = NMDC["OmicsProcessing"] class_class_curie: ClassVar[str] = "nmdc:OmicsProcessing" class_name: ClassVar[str] = "OmicsProcessing" class_model_uri: ClassVar[URIRef] = NMDC.OmicsProcessing @@ -4365,7 +4365,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class OntologyClass(NamedThing): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.OntologyClass + class_class_uri: ClassVar[URIRef] = NMDC["OntologyClass"] class_class_curie: ClassVar[str] = "nmdc:OntologyClass" class_name: ClassVar[str] = "OntologyClass" class_model_uri: ClassVar[URIRef] = NMDC.OntologyClass @@ -4389,7 +4389,7 @@ class FunctionalAnnotationTerm(OntologyClass): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.FunctionalAnnotationTerm + class_class_uri: ClassVar[URIRef] = NMDC["FunctionalAnnotationTerm"] class_class_curie: ClassVar[str] = "nmdc:FunctionalAnnotationTerm" class_name: ClassVar[str] = "FunctionalAnnotationTerm" class_model_uri: ClassVar[URIRef] = NMDC.FunctionalAnnotationTerm @@ -4403,7 +4403,7 @@ class Pathway(FunctionalAnnotationTerm): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Pathway + class_class_uri: ClassVar[URIRef] = NMDC["Pathway"] class_class_curie: ClassVar[str] = "nmdc:Pathway" class_name: ClassVar[str] = "Pathway" class_model_uri: ClassVar[URIRef] = NMDC.Pathway @@ -4434,7 +4434,7 @@ class Reaction(FunctionalAnnotationTerm): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Reaction + class_class_uri: ClassVar[URIRef] = NMDC["Reaction"] class_class_curie: ClassVar[str] = "nmdc:Reaction" class_name: ClassVar[str] = "Reaction" class_model_uri: ClassVar[URIRef] = NMDC.Reaction @@ -4495,7 +4495,7 @@ class OrthologyGroup(FunctionalAnnotationTerm): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.OrthologyGroup + class_class_uri: ClassVar[URIRef] = NMDC["OrthologyGroup"] class_class_curie: ClassVar[str] = "nmdc:OrthologyGroup" class_name: ClassVar[str] = "OrthologyGroup" class_model_uri: ClassVar[URIRef] = NMDC.OrthologyGroup @@ -4515,7 +4515,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class EnvironmentalMaterialTerm(OntologyClass): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.EnvironmentalMaterialTerm + class_class_uri: ClassVar[URIRef] = NMDC["EnvironmentalMaterialTerm"] class_class_curie: ClassVar[str] = "nmdc:EnvironmentalMaterialTerm" class_name: ClassVar[str] = "EnvironmentalMaterialTerm" class_model_uri: ClassVar[URIRef] = NMDC.EnvironmentalMaterialTerm @@ -4539,7 +4539,7 @@ class AttributeValue(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.AttributeValue + class_class_uri: ClassVar[URIRef] = NMDC["AttributeValue"] class_class_curie: ClassVar[str] = "nmdc:AttributeValue" class_name: ClassVar[str] = "AttributeValue" class_model_uri: ClassVar[URIRef] = NMDC.AttributeValue @@ -4568,7 +4568,7 @@ class QuantityValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.QuantityValue + class_class_uri: ClassVar[URIRef] = NMDC["QuantityValue"] class_class_curie: ClassVar[str] = "nmdc:QuantityValue" class_name: ClassVar[str] = "QuantityValue" class_model_uri: ClassVar[URIRef] = NMDC.QuantityValue @@ -4605,7 +4605,7 @@ class ImageValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ImageValue + class_class_uri: ClassVar[URIRef] = NMDC["ImageValue"] class_class_curie: ClassVar[str] = "nmdc:ImageValue" class_name: ClassVar[str] = "ImageValue" class_model_uri: ClassVar[URIRef] = NMDC.ImageValue @@ -4634,7 +4634,7 @@ class PersonValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.PersonValue + class_class_uri: ClassVar[URIRef] = NMDC["PersonValue"] class_class_curie: ClassVar[str] = "nmdc:PersonValue" class_name: ClassVar[str] = "PersonValue" class_model_uri: ClassVar[URIRef] = NMDC.PersonValue @@ -4673,7 +4673,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MagBin(YAMLRoot): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MagBin + class_class_uri: ClassVar[URIRef] = NMDC["MagBin"] class_class_curie: ClassVar[str] = "nmdc:MagBin" class_name: ClassVar[str] = "MagBin" class_model_uri: ClassVar[URIRef] = NMDC.MagBin @@ -4770,7 +4770,7 @@ class MetaboliteQuantification(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetaboliteQuantification + class_class_uri: ClassVar[URIRef] = NMDC["MetaboliteQuantification"] class_class_curie: ClassVar[str] = "nmdc:MetaboliteQuantification" class_name: ClassVar[str] = "MetaboliteQuantification" class_model_uri: ClassVar[URIRef] = NMDC.MetaboliteQuantification @@ -4800,7 +4800,7 @@ class PeptideQuantification(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.PeptideQuantification + class_class_uri: ClassVar[URIRef] = NMDC["PeptideQuantification"] class_class_curie: ClassVar[str] = "nmdc:PeptideQuantification" class_name: ClassVar[str] = "PeptideQuantification" class_model_uri: ClassVar[URIRef] = NMDC.PeptideQuantification @@ -4842,7 +4842,7 @@ class ProteinQuantification(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ProteinQuantification + class_class_uri: ClassVar[URIRef] = NMDC["ProteinQuantification"] class_class_curie: ClassVar[str] = "nmdc:ProteinQuantification" class_name: ClassVar[str] = "ProteinQuantification" class_model_uri: ClassVar[URIRef] = NMDC.ProteinQuantification @@ -4881,7 +4881,7 @@ class ChemicalEntity(OntologyClass): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ChemicalEntity + class_class_uri: ClassVar[URIRef] = NMDC["ChemicalEntity"] class_class_curie: ClassVar[str] = "nmdc:ChemicalEntity" class_name: ClassVar[str] = "ChemicalEntity" class_model_uri: ClassVar[URIRef] = NMDC.ChemicalEntity @@ -4921,7 +4921,7 @@ class GeneProduct(NamedThing): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.GeneProduct + class_class_uri: ClassVar[URIRef] = NMDC["GeneProduct"] class_class_curie: ClassVar[str] = "nmdc:GeneProduct" class_name: ClassVar[str] = "GeneProduct" class_model_uri: ClassVar[URIRef] = NMDC.GeneProduct @@ -4944,7 +4944,7 @@ class TextValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.TextValue + class_class_uri: ClassVar[URIRef] = NMDC["TextValue"] class_class_curie: ClassVar[str] = "nmdc:TextValue" class_name: ClassVar[str] = "TextValue" class_model_uri: ClassVar[URIRef] = NMDC.TextValue @@ -4964,7 +4964,7 @@ class UrlValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.UrlValue + class_class_uri: ClassVar[URIRef] = NMDC["UrlValue"] class_class_curie: ClassVar[str] = "nmdc:UrlValue" class_name: ClassVar[str] = "UrlValue" class_model_uri: ClassVar[URIRef] = NMDC.UrlValue @@ -4976,7 +4976,7 @@ class TimestampValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.TimestampValue + class_class_uri: ClassVar[URIRef] = NMDC["TimestampValue"] class_class_curie: ClassVar[str] = "nmdc:TimestampValue" class_name: ClassVar[str] = "TimestampValue" class_model_uri: ClassVar[URIRef] = NMDC.TimestampValue @@ -4989,7 +4989,7 @@ class IntegerValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.IntegerValue + class_class_uri: ClassVar[URIRef] = NMDC["IntegerValue"] class_class_curie: ClassVar[str] = "nmdc:IntegerValue" class_name: ClassVar[str] = "IntegerValue" class_model_uri: ClassVar[URIRef] = NMDC.IntegerValue @@ -5010,7 +5010,7 @@ class BooleanValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.BooleanValue + class_class_uri: ClassVar[URIRef] = NMDC["BooleanValue"] class_class_curie: ClassVar[str] = "nmdc:BooleanValue" class_name: ClassVar[str] = "BooleanValue" class_model_uri: ClassVar[URIRef] = NMDC.BooleanValue @@ -5031,7 +5031,7 @@ class ControlledTermValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ControlledTermValue + class_class_uri: ClassVar[URIRef] = NMDC["ControlledTermValue"] class_class_curie: ClassVar[str] = "nmdc:ControlledTermValue" class_name: ClassVar[str] = "ControlledTermValue" class_model_uri: ClassVar[URIRef] = NMDC.ControlledTermValue @@ -5052,7 +5052,7 @@ class ControlledIdentifiedTermValue(ControlledTermValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ControlledIdentifiedTermValue + class_class_uri: ClassVar[URIRef] = NMDC["ControlledIdentifiedTermValue"] class_class_curie: ClassVar[str] = "nmdc:ControlledIdentifiedTermValue" class_name: ClassVar[str] = "ControlledIdentifiedTermValue" class_model_uri: ClassVar[URIRef] = NMDC.ControlledIdentifiedTermValue @@ -5075,7 +5075,7 @@ class GeolocationValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.GeolocationValue + class_class_uri: ClassVar[URIRef] = NMDC["GeolocationValue"] class_class_curie: ClassVar[str] = "nmdc:GeolocationValue" class_name: ClassVar[str] = "GeolocationValue" class_model_uri: ClassVar[URIRef] = NMDC.GeolocationValue @@ -5139,7 +5139,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MaterialContainer(YAMLRoot): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MaterialContainer + class_class_uri: ClassVar[URIRef] = NMDC["MaterialContainer"] class_class_curie: ClassVar[str] = "nmdc:MaterialContainer" class_name: ClassVar[str] = "MaterialContainer" class_model_uri: ClassVar[URIRef] = NMDC.MaterialContainer @@ -5161,7 +5161,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MaterialSample(NamedThing): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MaterialSample + class_class_uri: ClassVar[URIRef] = NMDC["MaterialSample"] class_class_curie: ClassVar[str] = "nmdc:MaterialSample" class_name: ClassVar[str] = "MaterialSample" class_model_uri: ClassVar[URIRef] = NMDC.MaterialSample @@ -5211,7 +5211,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class ReactionActivity(YAMLRoot): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ReactionActivity + class_class_uri: ClassVar[URIRef] = NMDC["ReactionActivity"] class_class_curie: ClassVar[str] = "nmdc:ReactionActivity" class_name: ClassVar[str] = "ReactionActivity" class_model_uri: ClassVar[URIRef] = NMDC.ReactionActivity @@ -5245,7 +5245,7 @@ class Activity(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Activity + class_class_uri: ClassVar[URIRef] = NMDC["Activity"] class_class_curie: ClassVar[str] = "nmdc:Activity" class_name: ClassVar[str] = "Activity" class_model_uri: ClassVar[URIRef] = NMDC.Activity @@ -5288,7 +5288,7 @@ class WorkflowExecutionActivity(Activity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.WorkflowExecutionActivity + class_class_uri: ClassVar[URIRef] = NMDC["WorkflowExecutionActivity"] class_class_curie: ClassVar[str] = "nmdc:WorkflowExecutionActivity" class_name: ClassVar[str] = "WorkflowExecutionActivity" class_model_uri: ClassVar[URIRef] = NMDC.WorkflowExecutionActivity @@ -5364,7 +5364,7 @@ class MetagenomeAssembly(WorkflowExecutionActivity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetagenomeAssembly + class_class_uri: ClassVar[URIRef] = NMDC["MetagenomeAssembly"] class_class_curie: ClassVar[str] = "nmdc:MetagenomeAssembly" class_name: ClassVar[str] = "MetagenomeAssembly" class_model_uri: ClassVar[URIRef] = NMDC.MetagenomeAssembly @@ -5506,7 +5506,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MetatranscriptomeAssembly(WorkflowExecutionActivity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetatranscriptomeAssembly + class_class_uri: ClassVar[URIRef] = NMDC["MetatranscriptomeAssembly"] class_class_curie: ClassVar[str] = "nmdc:MetatranscriptomeAssembly" class_name: ClassVar[str] = "MetatranscriptomeAssembly" class_model_uri: ClassVar[URIRef] = NMDC.MetatranscriptomeAssembly @@ -5648,7 +5648,7 @@ class MetagenomeAnnotationActivity(WorkflowExecutionActivity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetagenomeAnnotationActivity + class_class_uri: ClassVar[URIRef] = NMDC["MetagenomeAnnotationActivity"] class_class_curie: ClassVar[str] = "nmdc:MetagenomeAnnotationActivity" class_name: ClassVar[str] = "MetagenomeAnnotationActivity" class_model_uri: ClassVar[URIRef] = NMDC.MetagenomeAnnotationActivity @@ -5683,7 +5683,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MetatranscriptomeAnnotationActivity(WorkflowExecutionActivity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetatranscriptomeAnnotationActivity + class_class_uri: ClassVar[URIRef] = NMDC["MetatranscriptomeAnnotationActivity"] class_class_curie: ClassVar[str] = "nmdc:MetatranscriptomeAnnotationActivity" class_name: ClassVar[str] = "MetatranscriptomeAnnotationActivity" class_model_uri: ClassVar[URIRef] = NMDC.MetatranscriptomeAnnotationActivity @@ -5721,7 +5721,7 @@ class MetatranscriptomeActivity(WorkflowExecutionActivity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetatranscriptomeActivity + class_class_uri: ClassVar[URIRef] = NMDC["MetatranscriptomeActivity"] class_class_curie: ClassVar[str] = "nmdc:MetatranscriptomeActivity" class_name: ClassVar[str] = "MetatranscriptomeActivity" class_model_uri: ClassVar[URIRef] = NMDC.MetatranscriptomeActivity @@ -5754,7 +5754,7 @@ class MagsAnalysisActivity(WorkflowExecutionActivity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MagsAnalysisActivity + class_class_uri: ClassVar[URIRef] = NMDC["MagsAnalysisActivity"] class_class_curie: ClassVar[str] = "nmdc:MagsAnalysisActivity" class_name: ClassVar[str] = "MagsAnalysisActivity" class_model_uri: ClassVar[URIRef] = NMDC.MagsAnalysisActivity @@ -5813,7 +5813,7 @@ class MetagenomeSequencingActivity(WorkflowExecutionActivity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetagenomeSequencingActivity + class_class_uri: ClassVar[URIRef] = NMDC["MetagenomeSequencingActivity"] class_class_curie: ClassVar[str] = "nmdc:MetagenomeSequencingActivity" class_name: ClassVar[str] = "MetagenomeSequencingActivity" class_model_uri: ClassVar[URIRef] = NMDC.MetagenomeSequencingActivity @@ -5845,7 +5845,7 @@ class ReadQcAnalysisActivity(WorkflowExecutionActivity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ReadQcAnalysisActivity + class_class_uri: ClassVar[URIRef] = NMDC["ReadQcAnalysisActivity"] class_class_curie: ClassVar[str] = "nmdc:ReadQcAnalysisActivity" class_name: ClassVar[str] = "ReadQcAnalysisActivity" class_model_uri: ClassVar[URIRef] = NMDC.ReadQcAnalysisActivity @@ -5906,7 +5906,7 @@ class ReadBasedTaxonomyAnalysisActivity(WorkflowExecutionActivity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ReadBasedTaxonomyAnalysisActivity + class_class_uri: ClassVar[URIRef] = NMDC["ReadBasedTaxonomyAnalysisActivity"] class_class_curie: ClassVar[str] = "nmdc:ReadBasedTaxonomyAnalysisActivity" class_name: ClassVar[str] = "ReadBasedTaxonomyAnalysisActivity" class_model_uri: ClassVar[URIRef] = NMDC.ReadBasedTaxonomyAnalysisActivity @@ -5936,7 +5936,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MetabolomicsAnalysisActivity(WorkflowExecutionActivity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetabolomicsAnalysisActivity + class_class_uri: ClassVar[URIRef] = NMDC["MetabolomicsAnalysisActivity"] class_class_curie: ClassVar[str] = "nmdc:MetabolomicsAnalysisActivity" class_name: ClassVar[str] = "MetabolomicsAnalysisActivity" class_model_uri: ClassVar[URIRef] = NMDC.MetabolomicsAnalysisActivity @@ -5972,7 +5972,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MetaproteomicsAnalysisActivity(WorkflowExecutionActivity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetaproteomicsAnalysisActivity + class_class_uri: ClassVar[URIRef] = NMDC["MetaproteomicsAnalysisActivity"] class_class_curie: ClassVar[str] = "nmdc:MetaproteomicsAnalysisActivity" class_name: ClassVar[str] = "MetaproteomicsAnalysisActivity" class_model_uri: ClassVar[URIRef] = NMDC.MetaproteomicsAnalysisActivity @@ -6008,7 +6008,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class NomAnalysisActivity(WorkflowExecutionActivity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.NomAnalysisActivity + class_class_uri: ClassVar[URIRef] = NMDC["NomAnalysisActivity"] class_class_curie: ClassVar[str] = "nmdc:NomAnalysisActivity" class_name: ClassVar[str] = "NomAnalysisActivity" class_model_uri: ClassVar[URIRef] = NMDC.NomAnalysisActivity @@ -6625,62 +6625,159 @@ def _addvals(cls): setattr(cls, "CEREX System 96 processor", PermissibleValue(text="CEREX System 96 processor")) -class SubstructureTypeEnum(EnumDefinitionImpl): +class SrKerogTypeEnum(EnumDefinitionImpl): - crawlspace = PermissibleValue(text="crawlspace") - basement = PermissibleValue(text="basement") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="SubstructureTypeEnum", + name="SrKerogTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "slab on grade", - PermissibleValue(text="slab on grade")) + setattr(cls, "Type I", + PermissibleValue(text="Type I")) + setattr(cls, "Type II", + PermissibleValue(text="Type II")) + setattr(cls, "Type III", + PermissibleValue(text="Type III")) + setattr(cls, "Type IV", + PermissibleValue(text="Type IV")) -class WindowCoverEnum(EnumDefinitionImpl): +class MechStrucEnum(EnumDefinitionImpl): - blinds = PermissibleValue(text="blinds") - curtains = PermissibleValue(text="curtains") - none = PermissibleValue(text="none") + subway = PermissibleValue(text="subway") + coach = PermissibleValue(text="coach") + carriage = PermissibleValue(text="carriage") + elevator = PermissibleValue(text="elevator") + escalator = PermissibleValue(text="escalator") + boat = PermissibleValue(text="boat") + train = PermissibleValue(text="train") + car = PermissibleValue(text="car") + bus = PermissibleValue(text="bus") _defn = EnumDefinition( - name="WindowCoverEnum", + name="MechStrucEnum", ) -class RoomLocEnum(EnumDefinitionImpl): +class FilterTypeEnum(EnumDefinitionImpl): + + HEPA = PermissibleValue(text="HEPA") + electrostatic = PermissibleValue(text="electrostatic") _defn = EnumDefinition( - name="RoomLocEnum", + name="FilterTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "corner room", - PermissibleValue(text="corner room")) - setattr(cls, "interior room", - PermissibleValue(text="interior room")) - setattr(cls, "exterior wall", - PermissibleValue(text="exterior wall")) + setattr(cls, "particulate air filter", + PermissibleValue(text="particulate air filter")) + setattr(cls, "chemical air filter", + PermissibleValue(text="chemical air filter")) + setattr(cls, "low-MERV pleated media", + PermissibleValue(text="low-MERV pleated media")) + setattr(cls, "gas-phase or ultraviolet air treatments", + PermissibleValue(text="gas-phase or ultraviolet air treatments")) -class DoorTypeMetalEnum(EnumDefinitionImpl): +class OxyStatSampEnum(EnumDefinitionImpl): - collapsible = PermissibleValue(text="collapsible") - hollow = PermissibleValue(text="hollow") + aerobic = PermissibleValue(text="aerobic") + anaerobic = PermissibleValue(text="anaerobic") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="DoorTypeMetalEnum", + name="OxyStatSampEnum", + ) + +class WindowTypeEnum(EnumDefinitionImpl): + + _defn = EnumDefinition( + name="WindowTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "corrugated steel", - PermissibleValue(text="corrugated steel")) - setattr(cls, "rolling shutters", - PermissibleValue(text="rolling shutters")) - setattr(cls, "steel plate", - PermissibleValue(text="steel plate")) + setattr(cls, "single-hung sash window", + PermissibleValue(text="single-hung sash window")) + setattr(cls, "horizontal sash window", + PermissibleValue(text="horizontal sash window")) + setattr(cls, "fixed window", + PermissibleValue(text="fixed window")) + +class ArchStrucEnum(EnumDefinitionImpl): + + building = PermissibleValue(text="building") + shed = PermissibleValue(text="shed") + home = PermissibleValue(text="home") + + _defn = EnumDefinition( + name="ArchStrucEnum", + ) + +class CeilFinishMatEnum(EnumDefinitionImpl): + + drywall = PermissibleValue(text="drywall") + tiles = PermissibleValue(text="tiles") + PVC = PermissibleValue(text="PVC") + plasterboard = PermissibleValue(text="plasterboard") + metal = PermissibleValue(text="metal") + fiberglass = PermissibleValue(text="fiberglass") + stucco = PermissibleValue(text="stucco") + wood = PermissibleValue(text="wood") + + _defn = EnumDefinition( + name="CeilFinishMatEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "mineral fibre", + PermissibleValue(text="mineral fibre")) + setattr(cls, "mineral wool/calcium silicate", + PermissibleValue(text="mineral wool/calcium silicate")) + +class QuadPosEnum(EnumDefinitionImpl): + + _defn = EnumDefinition( + name="QuadPosEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "North side", + PermissibleValue(text="North side")) + setattr(cls, "West side", + PermissibleValue(text="West side")) + setattr(cls, "South side", + PermissibleValue(text="South side")) + setattr(cls, "East side", + PermissibleValue(text="East side")) + +class HcrGeolAgeEnum(EnumDefinitionImpl): + + Archean = PermissibleValue(text="Archean") + Cambrian = PermissibleValue(text="Cambrian") + Carboniferous = PermissibleValue(text="Carboniferous") + Cenozoic = PermissibleValue(text="Cenozoic") + Cretaceous = PermissibleValue(text="Cretaceous") + Devonian = PermissibleValue(text="Devonian") + Jurassic = PermissibleValue(text="Jurassic") + Mesozoic = PermissibleValue(text="Mesozoic") + Neogene = PermissibleValue(text="Neogene") + Ordovician = PermissibleValue(text="Ordovician") + Paleogene = PermissibleValue(text="Paleogene") + Paleozoic = PermissibleValue(text="Paleozoic") + Permian = PermissibleValue(text="Permian") + Precambrian = PermissibleValue(text="Precambrian") + Proterozoic = PermissibleValue(text="Proterozoic") + Silurian = PermissibleValue(text="Silurian") + Triassic = PermissibleValue(text="Triassic") + other = PermissibleValue(text="other") + + _defn = EnumDefinition( + name="HcrGeolAgeEnum", + ) class OccupDocumentEnum(EnumDefinitionImpl): @@ -6698,201 +6795,238 @@ def _addvals(cls): setattr(cls, "manual count", PermissibleValue(text="manual count")) -class BiolStatEnum(EnumDefinitionImpl): +class PlantGrowthMedEnum(EnumDefinitionImpl): - wild = PermissibleValue(text="wild") - natural = PermissibleValue(text="natural") - hybrid = PermissibleValue(text="hybrid") - mutant = PermissibleValue(text="mutant") + perlite = PermissibleValue(text="perlite") + pumice = PermissibleValue(text="pumice") + sand = PermissibleValue(text="sand") + soil = PermissibleValue(text="soil") + vermiculite = PermissibleValue(text="vermiculite") + water = PermissibleValue(text="water") _defn = EnumDefinition( - name="BiolStatEnum", + name="PlantGrowthMedEnum", ) @classmethod def _addvals(cls): - setattr(cls, "semi-natural", - PermissibleValue(text="semi-natural")) - setattr(cls, "inbred line", - PermissibleValue(text="inbred line")) - setattr(cls, "breeder's line", - PermissibleValue(text="breeder's line")) - setattr(cls, "clonal selection", - PermissibleValue(text="clonal selection")) + setattr(cls, "other artificial liquid medium", + PermissibleValue(text="other artificial liquid medium")) + setattr(cls, "other artificial solid medium", + PermissibleValue(text="other artificial solid medium")) + setattr(cls, "peat moss", + PermissibleValue(text="peat moss")) -class BuildDocsEnum(EnumDefinitionImpl): +class CeilCondEnum(EnumDefinitionImpl): - schedule = PermissibleValue(text="schedule") - sections = PermissibleValue(text="sections") - submittals = PermissibleValue(text="submittals") - windows = PermissibleValue(text="windows") + new = PermissibleValue(text="new") + damaged = PermissibleValue(text="damaged") + rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="BuildDocsEnum", + name="CeilCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "building information model", - PermissibleValue(text="building information model")) - setattr(cls, "commissioning report", - PermissibleValue(text="commissioning report")) - setattr(cls, "complaint logs", - PermissibleValue(text="complaint logs")) - setattr(cls, "contract administration", - PermissibleValue(text="contract administration")) - setattr(cls, "cost estimate", - PermissibleValue(text="cost estimate")) - setattr(cls, "janitorial schedules or logs", - PermissibleValue(text="janitorial schedules or logs")) - setattr(cls, "maintenance plans", - PermissibleValue(text="maintenance plans")) - setattr(cls, "shop drawings", - PermissibleValue(text="shop drawings")) - setattr(cls, "ventilation system", - PermissibleValue(text="ventilation system")) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) -class DrawingsEnum(EnumDefinitionImpl): +class GenderRestroomEnum(EnumDefinitionImpl): - operation = PermissibleValue(text="operation") - construction = PermissibleValue(text="construction") - bid = PermissibleValue(text="bid") - design = PermissibleValue(text="design") - diagram = PermissibleValue(text="diagram") - sketch = PermissibleValue(text="sketch") + female = PermissibleValue(text="female") + male = PermissibleValue(text="male") + unisex = PermissibleValue(text="unisex") _defn = EnumDefinition( - name="DrawingsEnum", + name="GenderRestroomEnum", ) @classmethod def _addvals(cls): - setattr(cls, "as built", - PermissibleValue(text="as built")) - setattr(cls, "building navigation map", - PermissibleValue(text="building navigation map")) + setattr(cls, "all gender", + PermissibleValue(text="all gender")) + setattr(cls, "gender neurtral", + PermissibleValue(text="gender neurtral")) + setattr(cls, "male and female", + PermissibleValue(text="male and female")) -class CeilTextureEnum(EnumDefinitionImpl): +class VisMediaEnum(EnumDefinitionImpl): - knockdown = PermissibleValue(text="knockdown") - popcorn = PermissibleValue(text="popcorn") - smooth = PermissibleValue(text="smooth") - swirl = PermissibleValue(text="swirl") + photos = PermissibleValue(text="photos") + videos = PermissibleValue(text="videos") + interiors = PermissibleValue(text="interiors") + equipment = PermissibleValue(text="equipment") _defn = EnumDefinition( - name="CeilTextureEnum", + name="VisMediaEnum", ) @classmethod def _addvals(cls): - setattr(cls, "crows feet", - PermissibleValue(text="crows feet")) - setattr(cls, "crows-foot stomp", - PermissibleValue(text="crows-foot stomp")) - setattr(cls, "double skip", - PermissibleValue(text="double skip")) - setattr(cls, "hawk and trowel", - PermissibleValue(text="hawk and trowel")) - setattr(cls, "orange peel", - PermissibleValue(text="orange peel")) - setattr(cls, "rosebud stomp", - PermissibleValue(text="rosebud stomp")) - setattr(cls, "Santa-Fe texture", - PermissibleValue(text="Santa-Fe texture")) - setattr(cls, "skip trowel", - PermissibleValue(text="skip trowel")) - setattr(cls, "stomp knockdown", - PermissibleValue(text="stomp knockdown")) + setattr(cls, "commonly of the building", + PermissibleValue(text="commonly of the building")) + setattr(cls, "site context (adjacent buildings, vegetation, terrain, streets)", + PermissibleValue(text="site context (adjacent buildings, vegetation, terrain, streets)")) + setattr(cls, "3D scans", + PermissibleValue(text="3D scans")) -class SrDepEnvEnum(EnumDefinitionImpl): +class DoorTypeWoodEnum(EnumDefinitionImpl): - Lacustine = PermissibleValue(text="Lacustine") - Fluvioldeltaic = PermissibleValue(text="Fluvioldeltaic") - Fluviomarine = PermissibleValue(text="Fluviomarine") - Marine = PermissibleValue(text="Marine") - other = PermissibleValue(text="other") + battened = PermissibleValue(text="battened") + flush = PermissibleValue(text="flush") + louvered = PermissibleValue(text="louvered") _defn = EnumDefinition( - name="SrDepEnvEnum", + name="DoorTypeWoodEnum", ) -class LightTypeEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "bettened and ledged", + PermissibleValue(text="bettened and ledged")) + setattr(cls, "ledged and braced", + PermissibleValue(text="ledged and braced")) + setattr(cls, "ledged and framed", + PermissibleValue(text="ledged and framed")) + setattr(cls, "ledged, braced and frame", + PermissibleValue(text="ledged, braced and frame")) + setattr(cls, "framed and paneled", + PermissibleValue(text="framed and paneled")) + setattr(cls, "glashed or sash", + PermissibleValue(text="glashed or sash")) + setattr(cls, "wire gauged", + PermissibleValue(text="wire gauged")) - none = PermissibleValue(text="none") +class FaoClassEnum(EnumDefinitionImpl): + + Acrisols = PermissibleValue(text="Acrisols") + Andosols = PermissibleValue(text="Andosols") + Arenosols = PermissibleValue(text="Arenosols") + Cambisols = PermissibleValue(text="Cambisols") + Chernozems = PermissibleValue(text="Chernozems") + Ferralsols = PermissibleValue(text="Ferralsols") + Fluvisols = PermissibleValue(text="Fluvisols") + Gleysols = PermissibleValue(text="Gleysols") + Greyzems = PermissibleValue(text="Greyzems") + Gypsisols = PermissibleValue(text="Gypsisols") + Histosols = PermissibleValue(text="Histosols") + Kastanozems = PermissibleValue(text="Kastanozems") + Lithosols = PermissibleValue(text="Lithosols") + Luvisols = PermissibleValue(text="Luvisols") + Nitosols = PermissibleValue(text="Nitosols") + Phaeozems = PermissibleValue(text="Phaeozems") + Planosols = PermissibleValue(text="Planosols") + Podzols = PermissibleValue(text="Podzols") + Podzoluvisols = PermissibleValue(text="Podzoluvisols") + Rankers = PermissibleValue(text="Rankers") + Regosols = PermissibleValue(text="Regosols") + Rendzinas = PermissibleValue(text="Rendzinas") + Solonchaks = PermissibleValue(text="Solonchaks") + Solonetz = PermissibleValue(text="Solonetz") + Vertisols = PermissibleValue(text="Vertisols") + Yermosols = PermissibleValue(text="Yermosols") _defn = EnumDefinition( - name="LightTypeEnum", + name="FaoClassEnum", + ) + +class SoilHorizonEnum(EnumDefinitionImpl): + + Permafrost = PermissibleValue(text="Permafrost") + + _defn = EnumDefinition( + name="SoilHorizonEnum", ) @classmethod def _addvals(cls): - setattr(cls, "natural light", - PermissibleValue(text="natural light")) - setattr(cls, "electric light", - PermissibleValue(text="electric light")) - setattr(cls, "desk lamp", - PermissibleValue(text="desk lamp")) - setattr(cls, "flourescent lights", - PermissibleValue(text="flourescent lights")) + setattr(cls, "O horizon", + PermissibleValue(text="O horizon")) + setattr(cls, "A horizon", + PermissibleValue(text="A horizon")) + setattr(cls, "E horizon", + PermissibleValue(text="E horizon")) + setattr(cls, "B horizon", + PermissibleValue(text="B horizon")) + setattr(cls, "C horizon", + PermissibleValue(text="C horizon")) + setattr(cls, "R layer", + PermissibleValue(text="R layer")) + setattr(cls, "M horizon", + PermissibleValue(text="M horizon")) -class RoomSampPosEnum(EnumDefinitionImpl): +class SpecificEnum(EnumDefinitionImpl): - center = PermissibleValue(text="center") + operation = PermissibleValue(text="operation") + construction = PermissibleValue(text="construction") + bid = PermissibleValue(text="bid") + design = PermissibleValue(text="design") + photos = PermissibleValue(text="photos") _defn = EnumDefinition( - name="RoomSampPosEnum", + name="SpecificEnum", ) @classmethod def _addvals(cls): - setattr(cls, "north corner", - PermissibleValue(text="north corner")) - setattr(cls, "south corner", - PermissibleValue(text="south corner")) - setattr(cls, "west corner", - PermissibleValue(text="west corner")) - setattr(cls, "east corner", - PermissibleValue(text="east corner")) - setattr(cls, "northeast corner", - PermissibleValue(text="northeast corner")) - setattr(cls, "northwest corner", - PermissibleValue(text="northwest corner")) - setattr(cls, "southeast corner", - PermissibleValue(text="southeast corner")) - setattr(cls, "southwest corner", - PermissibleValue(text="southwest corner")) + setattr(cls, "as built", + PermissibleValue(text="as built")) -class RelSampLocEnum(EnumDefinitionImpl): +class TidalStageEnum(EnumDefinitionImpl): _defn = EnumDefinition( - name="RelSampLocEnum", + name="TidalStageEnum", ) @classmethod def _addvals(cls): - setattr(cls, "edge of car", - PermissibleValue(text="edge of car")) - setattr(cls, "center of car", - PermissibleValue(text="center of car")) - setattr(cls, "under a seat", - PermissibleValue(text="under a seat")) + setattr(cls, "low tide", + PermissibleValue(text="low tide")) + setattr(cls, "ebb tide", + PermissibleValue(text="ebb tide")) + setattr(cls, "flood tide", + PermissibleValue(text="flood tide")) + setattr(cls, "high tide", + PermissibleValue(text="high tide")) -class ShadingDeviceCondEnum(EnumDefinitionImpl): +class IntWallCondEnum(EnumDefinitionImpl): - damaged = PermissibleValue(text="damaged") new = PermissibleValue(text="new") + damaged = PermissibleValue(text="damaged") rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="ShadingDeviceCondEnum", + name="IntWallCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) setattr(cls, "visible wear", PermissibleValue(text="visible wear")) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) + +class HeatCoolTypeEnum(EnumDefinitionImpl): + + _defn = EnumDefinition( + name="HeatCoolTypeEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "radiant system", + PermissibleValue(text="radiant system")) + setattr(cls, "heat pump", + PermissibleValue(text="heat pump")) + setattr(cls, "forced air system", + PermissibleValue(text="forced air system")) + setattr(cls, "steam forced heat", + PermissibleValue(text="steam forced heat")) + setattr(cls, "wood stove", + PermissibleValue(text="wood stove")) class DrainageClassEnum(EnumDefinitionImpl): @@ -6914,26 +7048,6 @@ def _addvals(cls): setattr(cls, "excessively drained", PermissibleValue(text="excessively drained")) -class SampWeatherEnum(EnumDefinitionImpl): - - cloudy = PermissibleValue(text="cloudy") - foggy = PermissibleValue(text="foggy") - hail = PermissibleValue(text="hail") - rain = PermissibleValue(text="rain") - snow = PermissibleValue(text="snow") - sleet = PermissibleValue(text="sleet") - sunny = PermissibleValue(text="sunny") - windy = PermissibleValue(text="windy") - - _defn = EnumDefinition( - name="SampWeatherEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "clear sky", - PermissibleValue(text="clear sky")) - class WallConstTypeEnum(EnumDefinitionImpl): _defn = EnumDefinition( @@ -6955,153 +7069,137 @@ def _addvals(cls): setattr(cls, "fire resistive", PermissibleValue(text="fire resistive")) -class ArchStrucEnum(EnumDefinitionImpl): +class SampWeatherEnum(EnumDefinitionImpl): - building = PermissibleValue(text="building") - shed = PermissibleValue(text="shed") - home = PermissibleValue(text="home") + cloudy = PermissibleValue(text="cloudy") + foggy = PermissibleValue(text="foggy") + hail = PermissibleValue(text="hail") + rain = PermissibleValue(text="rain") + snow = PermissibleValue(text="snow") + sleet = PermissibleValue(text="sleet") + sunny = PermissibleValue(text="sunny") + windy = PermissibleValue(text="windy") _defn = EnumDefinition( - name="ArchStrucEnum", + name="SampWeatherEnum", ) -class WindowVertPosEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "clear sky", + PermissibleValue(text="clear sky")) - bottom = PermissibleValue(text="bottom") - middle = PermissibleValue(text="middle") - top = PermissibleValue(text="top") - low = PermissibleValue(text="low") - high = PermissibleValue(text="high") +class TrainLineEnum(EnumDefinitionImpl): + + red = PermissibleValue(text="red") + green = PermissibleValue(text="green") + orange = PermissibleValue(text="orange") _defn = EnumDefinition( - name="WindowVertPosEnum", + name="TrainLineEnum", ) -class WindowMatEnum(EnumDefinitionImpl): +class CeilTypeEnum(EnumDefinitionImpl): - clad = PermissibleValue(text="clad") - fiberglass = PermissibleValue(text="fiberglass") - metal = PermissibleValue(text="metal") - vinyl = PermissibleValue(text="vinyl") - wood = PermissibleValue(text="wood") + cathedral = PermissibleValue(text="cathedral") + dropped = PermissibleValue(text="dropped") + concave = PermissibleValue(text="concave") + coffered = PermissibleValue(text="coffered") + cove = PermissibleValue(text="cove") + stretched = PermissibleValue(text="stretched") _defn = EnumDefinition( - name="WindowMatEnum", + name="CeilTypeEnum", ) -class TrainStopLocEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "barrel-shaped", + PermissibleValue(text="barrel-shaped")) - end = PermissibleValue(text="end") - mid = PermissibleValue(text="mid") - downtown = PermissibleValue(text="downtown") +class SampDisStageEnum(EnumDefinitionImpl): + + dissemination = PermissibleValue(text="dissemination") + infection = PermissibleValue(text="infection") + inoculation = PermissibleValue(text="inoculation") + penetration = PermissibleValue(text="penetration") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="TrainStopLocEnum", + name="SampDisStageEnum", ) -class SampCaptStatusEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "growth and reproduction", + PermissibleValue(text="growth and reproduction")) + +class SampMdEnum(EnumDefinitionImpl): + DF = PermissibleValue(text="DF") + RT = PermissibleValue(text="RT") + KB = PermissibleValue(text="KB") + MSL = PermissibleValue(text="MSL") other = PermissibleValue(text="other") _defn = EnumDefinition( - name="SampCaptStatusEnum", + name="SampMdEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "active surveillance in response to an outbreak", - PermissibleValue(text="active surveillance in response to an outbreak")) - setattr(cls, "active surveillance not initiated by an outbreak", - PermissibleValue(text="active surveillance not initiated by an outbreak")) - setattr(cls, "farm sample", - PermissibleValue(text="farm sample")) - setattr(cls, "market sample", - PermissibleValue(text="market sample")) - -class FloorFinishMatEnum(EnumDefinitionImpl): +class DoorCompTypeEnum(EnumDefinitionImpl): - tile = PermissibleValue(text="tile") - carpet = PermissibleValue(text="carpet") - rug = PermissibleValue(text="rug") - lineoleum = PermissibleValue(text="lineoleum") - stone = PermissibleValue(text="stone") - bamboo = PermissibleValue(text="bamboo") - cork = PermissibleValue(text="cork") - terrazo = PermissibleValue(text="terrazo") - concrete = PermissibleValue(text="concrete") - none = PermissibleValue(text="none") - sealed = PermissibleValue(text="sealed") - paint = PermissibleValue(text="paint") + revolving = PermissibleValue(text="revolving") + sliding = PermissibleValue(text="sliding") + telescopic = PermissibleValue(text="telescopic") _defn = EnumDefinition( - name="FloorFinishMatEnum", + name="DoorCompTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "wood strip or parquet", - PermissibleValue(text="wood strip or parquet")) - setattr(cls, "laminate wood", - PermissibleValue(text="laminate wood")) - setattr(cls, "vinyl composition tile", - PermissibleValue(text="vinyl composition tile")) - setattr(cls, "sheet vinyl", - PermissibleValue(text="sheet vinyl")) - setattr(cls, "clear finish", - PermissibleValue(text="clear finish")) - setattr(cls, "none or unfinished", - PermissibleValue(text="none or unfinished")) + setattr(cls, "metal covered", + PermissibleValue(text="metal covered")) -class PlantGrowthMedEnum(EnumDefinitionImpl): +class WindowLocEnum(EnumDefinitionImpl): - perlite = PermissibleValue(text="perlite") - pumice = PermissibleValue(text="pumice") - sand = PermissibleValue(text="sand") - soil = PermissibleValue(text="soil") - vermiculite = PermissibleValue(text="vermiculite") - water = PermissibleValue(text="water") + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") _defn = EnumDefinition( - name="PlantGrowthMedEnum", + name="WindowLocEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "other artificial liquid medium", - PermissibleValue(text="other artificial liquid medium")) - setattr(cls, "other artificial solid medium", - PermissibleValue(text="other artificial solid medium")) - setattr(cls, "peat moss", - PermissibleValue(text="peat moss")) - -class OxyStatSampEnum(EnumDefinitionImpl): +class DoorLocEnum(EnumDefinitionImpl): - aerobic = PermissibleValue(text="aerobic") - anaerobic = PermissibleValue(text="anaerobic") - other = PermissibleValue(text="other") + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") _defn = EnumDefinition( - name="OxyStatSampEnum", + name="DoorLocEnum", ) -class WindowCondEnum(EnumDefinitionImpl): +class WaterFeatTypeEnum(EnumDefinitionImpl): - damaged = PermissibleValue(text="damaged") - new = PermissibleValue(text="new") - rupture = PermissibleValue(text="rupture") + fountain = PermissibleValue(text="fountain") + pool = PermissibleValue(text="pool") + stream = PermissibleValue(text="stream") + waterfall = PermissibleValue(text="waterfall") _defn = EnumDefinition( - name="WindowCondEnum", + name="WaterFeatTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) + setattr(cls, "standing feature", + PermissibleValue(text="standing feature")) -class WallTextureEnum(EnumDefinitionImpl): +class CeilTextureEnum(EnumDefinitionImpl): knockdown = PermissibleValue(text="knockdown") popcorn = PermissibleValue(text="popcorn") @@ -7109,7 +7207,7 @@ class WallTextureEnum(EnumDefinitionImpl): swirl = PermissibleValue(text="swirl") _defn = EnumDefinition( - name="WallTextureEnum", + name="CeilTextureEnum", ) @classmethod @@ -7118,8 +7216,6 @@ def _addvals(cls): PermissibleValue(text="crows feet")) setattr(cls, "crows-foot stomp", PermissibleValue(text="crows-foot stomp")) - setattr(cls, "", - PermissibleValue(text="")) setattr(cls, "double skip", PermissibleValue(text="double skip")) setattr(cls, "hawk and trowel", @@ -7135,29 +7231,53 @@ def _addvals(cls): setattr(cls, "stomp knockdown", PermissibleValue(text="stomp knockdown")) -class ProfilePositionEnum(EnumDefinitionImpl): +class GrowthHabitEnum(EnumDefinitionImpl): - summit = PermissibleValue(text="summit") - shoulder = PermissibleValue(text="shoulder") - backslope = PermissibleValue(text="backslope") - footslope = PermissibleValue(text="footslope") - toeslope = PermissibleValue(text="toeslope") + erect = PermissibleValue(text="erect") + spreading = PermissibleValue(text="spreading") + prostrate = PermissibleValue(text="prostrate") _defn = EnumDefinition( - name="ProfilePositionEnum", + name="GrowthHabitEnum", ) -class WallLocEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "semi-erect", + PermissibleValue(text="semi-erect")) - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") +class ShadingDeviceTypeEnum(EnumDefinitionImpl): + + tree = PermissibleValue(text="tree") + trellis = PermissibleValue(text="trellis") _defn = EnumDefinition( - name="WallLocEnum", + name="ShadingDeviceTypeEnum", ) + @classmethod + def _addvals(cls): + setattr(cls, "bahama shutters", + PermissibleValue(text="bahama shutters")) + setattr(cls, "exterior roll blind", + PermissibleValue(text="exterior roll blind")) + setattr(cls, "gambrel awning", + PermissibleValue(text="gambrel awning")) + setattr(cls, "hood awning", + PermissibleValue(text="hood awning")) + setattr(cls, "porchroller awning", + PermissibleValue(text="porchroller awning")) + setattr(cls, "sarasota shutters", + PermissibleValue(text="sarasota shutters")) + setattr(cls, "slatted aluminum", + PermissibleValue(text="slatted aluminum")) + setattr(cls, "solid aluminum awning", + PermissibleValue(text="solid aluminum awning")) + setattr(cls, "sun screen", + PermissibleValue(text="sun screen")) + setattr(cls, "venetian awning", + PermissibleValue(text="venetian awning")) + class RoomTypeEnum(EnumDefinitionImpl): attic = PermissibleValue(text="attic") @@ -7201,199 +7321,177 @@ def _addvals(cls): setattr(cls, "data center", PermissibleValue(text="data center")) -class DoorCondEnum(EnumDefinitionImpl): +class LightTypeEnum(EnumDefinitionImpl): - damaged = PermissibleValue(text="damaged") - new = PermissibleValue(text="new") - rupture = PermissibleValue(text="rupture") + none = PermissibleValue(text="none") _defn = EnumDefinition( - name="DoorCondEnum", + name="LightTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) + setattr(cls, "natural light", + PermissibleValue(text="natural light")) + setattr(cls, "electric light", + PermissibleValue(text="electric light")) + setattr(cls, "desk lamp", + PermissibleValue(text="desk lamp")) + setattr(cls, "flourescent lights", + PermissibleValue(text="flourescent lights")) -class OrganismCountEnum(EnumDefinitionImpl): +class BuildDocsEnum(EnumDefinitionImpl): - ATP = PermissibleValue(text="ATP") - MPN = PermissibleValue(text="MPN") - other = PermissibleValue(text="other") + schedule = PermissibleValue(text="schedule") + sections = PermissibleValue(text="sections") + submittals = PermissibleValue(text="submittals") + windows = PermissibleValue(text="windows") _defn = EnumDefinition( - name="OrganismCountEnum", + name="BuildDocsEnum", ) -class HostSexEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "building information model", + PermissibleValue(text="building information model")) + setattr(cls, "commissioning report", + PermissibleValue(text="commissioning report")) + setattr(cls, "complaint logs", + PermissibleValue(text="complaint logs")) + setattr(cls, "contract administration", + PermissibleValue(text="contract administration")) + setattr(cls, "cost estimate", + PermissibleValue(text="cost estimate")) + setattr(cls, "janitorial schedules or logs", + PermissibleValue(text="janitorial schedules or logs")) + setattr(cls, "maintenance plans", + PermissibleValue(text="maintenance plans")) + setattr(cls, "shop drawings", + PermissibleValue(text="shop drawings")) + setattr(cls, "ventilation system", + PermissibleValue(text="ventilation system")) - female = PermissibleValue(text="female") - hermaphrodite = PermissibleValue(text="hermaphrodite") - male = PermissibleValue(text="male") - neuter = PermissibleValue(text="neuter") +class WindowVertPosEnum(EnumDefinitionImpl): + + bottom = PermissibleValue(text="bottom") + middle = PermissibleValue(text="middle") + top = PermissibleValue(text="top") + low = PermissibleValue(text="low") + high = PermissibleValue(text="high") _defn = EnumDefinition( - name="HostSexEnum", + name="WindowVertPosEnum", ) -class IndoorSurfEnum(EnumDefinitionImpl): +class SampCollectPointEnum(EnumDefinitionImpl): - cabinet = PermissibleValue(text="cabinet") - ceiling = PermissibleValue(text="ceiling") - door = PermissibleValue(text="door") - shelving = PermissibleValue(text="shelving") - window = PermissibleValue(text="window") - wall = PermissibleValue(text="wall") + well = PermissibleValue(text="well") + wellhead = PermissibleValue(text="wellhead") + separator = PermissibleValue(text="separator") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="IndoorSurfEnum", + name="SampCollectPointEnum", ) @classmethod def _addvals(cls): - setattr(cls, "counter top", - PermissibleValue(text="counter top")) - setattr(cls, "vent cover", - PermissibleValue(text="vent cover")) + setattr(cls, "test well", + PermissibleValue(text="test well")) + setattr(cls, "drilling rig", + PermissibleValue(text="drilling rig")) + setattr(cls, "storage tank", + PermissibleValue(text="storage tank")) -class SoilHorizonEnum(EnumDefinitionImpl): +class TrainStopLocEnum(EnumDefinitionImpl): - Permafrost = PermissibleValue(text="Permafrost") + end = PermissibleValue(text="end") + mid = PermissibleValue(text="mid") + downtown = PermissibleValue(text="downtown") _defn = EnumDefinition( - name="SoilHorizonEnum", + name="TrainStopLocEnum", + ) + +class DoorCondEnum(EnumDefinitionImpl): + + damaged = PermissibleValue(text="damaged") + new = PermissibleValue(text="new") + rupture = PermissibleValue(text="rupture") + + _defn = EnumDefinition( + name="DoorCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "O horizon", - PermissibleValue(text="O horizon")) - setattr(cls, "A horizon", - PermissibleValue(text="A horizon")) - setattr(cls, "E horizon", - PermissibleValue(text="E horizon")) - setattr(cls, "B horizon", - PermissibleValue(text="B horizon")) - setattr(cls, "C horizon", - PermissibleValue(text="C horizon")) - setattr(cls, "R layer", - PermissibleValue(text="R layer")) - setattr(cls, "M horizon", - PermissibleValue(text="M horizon")) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) -class ExtWindowOrientEnum(EnumDefinitionImpl): +class RoomCondtEnum(EnumDefinitionImpl): - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") - northeast = PermissibleValue(text="northeast") - southeast = PermissibleValue(text="southeast") - southwest = PermissibleValue(text="southwest") - northwest = PermissibleValue(text="northwest") + new = PermissibleValue(text="new") + damaged = PermissibleValue(text="damaged") + rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="ExtWindowOrientEnum", + name="RoomCondtEnum", ) -class CurLandUseEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) + setattr(cls, "visible signs of mold/mildew", + PermissibleValue(text="visible signs of mold/mildew")) - badlands = PermissibleValue(text="badlands") - cities = PermissibleValue(text="cities") - conifers = PermissibleValue(text="conifers") - farmstead = PermissibleValue(text="farmstead") - gravel = PermissibleValue(text="gravel") - hardwoods = PermissibleValue(text="hardwoods") - hayland = PermissibleValue(text="hayland") - marshlands = PermissibleValue(text="marshlands") - meadows = PermissibleValue(text="meadows") - mudflats = PermissibleValue(text="mudflats") - pastureland = PermissibleValue(text="pastureland") - rainforest = PermissibleValue(text="rainforest") - rangeland = PermissibleValue(text="rangeland") - rock = PermissibleValue(text="rock") - sand = PermissibleValue(text="sand") - swamp = PermissibleValue(text="swamp") - tropical = PermissibleValue(text="tropical") - tundra = PermissibleValue(text="tundra") +class DoorTypeMetalEnum(EnumDefinitionImpl): + + collapsible = PermissibleValue(text="collapsible") + hollow = PermissibleValue(text="hollow") _defn = EnumDefinition( - name="CurLandUseEnum", + name="DoorTypeMetalEnum", ) @classmethod def _addvals(cls): - setattr(cls, "crop trees", - PermissibleValue(text="crop trees")) - setattr(cls, "horticultural plants", - PermissibleValue(text="horticultural plants")) - setattr(cls, "industrial areas", - PermissibleValue(text="industrial areas")) - setattr(cls, "intermixed hardwood and conifers", - PermissibleValue(text="intermixed hardwood and conifers")) - setattr(cls, "mines/quarries", - PermissibleValue(text="mines/quarries")) - setattr(cls, "oil waste areas", - PermissibleValue(text="oil waste areas")) - setattr(cls, "permanent snow or ice", - PermissibleValue(text="permanent snow or ice")) - setattr(cls, "roads/railroads", - PermissibleValue(text="roads/railroads")) - setattr(cls, "row crops", - PermissibleValue(text="row crops")) - setattr(cls, "saline seeps", - PermissibleValue(text="saline seeps")) - setattr(cls, "salt flats", - PermissibleValue(text="salt flats")) - setattr(cls, "shrub crops", - PermissibleValue(text="shrub crops")) - setattr(cls, "shrub land", - PermissibleValue(text="shrub land")) - setattr(cls, "small grains", - PermissibleValue(text="small grains")) - setattr(cls, "successional shrub land", - PermissibleValue(text="successional shrub land")) - setattr(cls, "vegetable crops", - PermissibleValue(text="vegetable crops")) - setattr(cls, "vine crops", - PermissibleValue(text="vine crops")) + setattr(cls, "corrugated steel", + PermissibleValue(text="corrugated steel")) + setattr(cls, "rolling shutters", + PermissibleValue(text="rolling shutters")) + setattr(cls, "steel plate", + PermissibleValue(text="steel plate")) -class FaoClassEnum(EnumDefinitionImpl): +class TillageEnum(EnumDefinitionImpl): - Acrisols = PermissibleValue(text="Acrisols") - Andosols = PermissibleValue(text="Andosols") - Arenosols = PermissibleValue(text="Arenosols") - Cambisols = PermissibleValue(text="Cambisols") - Chernozems = PermissibleValue(text="Chernozems") - Ferralsols = PermissibleValue(text="Ferralsols") - Fluvisols = PermissibleValue(text="Fluvisols") - Gleysols = PermissibleValue(text="Gleysols") - Greyzems = PermissibleValue(text="Greyzems") - Gypsisols = PermissibleValue(text="Gypsisols") - Histosols = PermissibleValue(text="Histosols") - Kastanozems = PermissibleValue(text="Kastanozems") - Lithosols = PermissibleValue(text="Lithosols") - Luvisols = PermissibleValue(text="Luvisols") - Nitosols = PermissibleValue(text="Nitosols") - Phaeozems = PermissibleValue(text="Phaeozems") - Planosols = PermissibleValue(text="Planosols") - Podzols = PermissibleValue(text="Podzols") - Podzoluvisols = PermissibleValue(text="Podzoluvisols") - Rankers = PermissibleValue(text="Rankers") - Regosols = PermissibleValue(text="Regosols") - Rendzinas = PermissibleValue(text="Rendzinas") - Solonchaks = PermissibleValue(text="Solonchaks") - Solonetz = PermissibleValue(text="Solonetz") - Vertisols = PermissibleValue(text="Vertisols") - Yermosols = PermissibleValue(text="Yermosols") + drill = PermissibleValue(text="drill") + chisel = PermissibleValue(text="chisel") + tined = PermissibleValue(text="tined") + mouldboard = PermissibleValue(text="mouldboard") _defn = EnumDefinition( - name="FaoClassEnum", + name="TillageEnum", ) + @classmethod + def _addvals(cls): + setattr(cls, "cutting disc", + PermissibleValue(text="cutting disc")) + setattr(cls, "ridge till", + PermissibleValue(text="ridge till")) + setattr(cls, "strip tillage", + PermissibleValue(text="strip tillage")) + setattr(cls, "zonal tillage", + PermissibleValue(text="zonal tillage")) + setattr(cls, "disc plough", + PermissibleValue(text="disc plough")) + class SrLithologyEnum(EnumDefinitionImpl): Clastic = PermissibleValue(text="Clastic") @@ -7406,201 +7504,125 @@ class SrLithologyEnum(EnumDefinitionImpl): name="SrLithologyEnum", ) -class DoorMatEnum(EnumDefinitionImpl): +class DoorMoveEnum(EnumDefinitionImpl): - aluminum = PermissibleValue(text="aluminum") - fiberboard = PermissibleValue(text="fiberboard") - fiberglass = PermissibleValue(text="fiberglass") - metal = PermissibleValue(text="metal") - vinyl = PermissibleValue(text="vinyl") - wood = PermissibleValue(text="wood") + collapsible = PermissibleValue(text="collapsible") + folding = PermissibleValue(text="folding") + revolving = PermissibleValue(text="revolving") + sliding = PermissibleValue(text="sliding") + swinging = PermissibleValue(text="swinging") _defn = EnumDefinition( - name="DoorMatEnum", + name="DoorMoveEnum", ) @classmethod def _addvals(cls): - setattr(cls, "cellular PVC", - PermissibleValue(text="cellular PVC")) - setattr(cls, "engineered plastic", - PermissibleValue(text="engineered plastic")) - setattr(cls, "thermoplastic alloy", - PermissibleValue(text="thermoplastic alloy")) - setattr(cls, "wood/plastic composite", - PermissibleValue(text="wood/plastic composite")) + setattr(cls, "rolling shutter", + PermissibleValue(text="rolling shutter")) -class CeilFinishMatEnum(EnumDefinitionImpl): +class WindowCoverEnum(EnumDefinitionImpl): - drywall = PermissibleValue(text="drywall") - tiles = PermissibleValue(text="tiles") - PVC = PermissibleValue(text="PVC") - plasterboard = PermissibleValue(text="plasterboard") - metal = PermissibleValue(text="metal") - fiberglass = PermissibleValue(text="fiberglass") - stucco = PermissibleValue(text="stucco") - wood = PermissibleValue(text="wood") + blinds = PermissibleValue(text="blinds") + curtains = PermissibleValue(text="curtains") + none = PermissibleValue(text="none") _defn = EnumDefinition( - name="CeilFinishMatEnum", + name="WindowCoverEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "mineral fibre", - PermissibleValue(text="mineral fibre")) - setattr(cls, "mineral wool/calcium silicate", - PermissibleValue(text="mineral wool/calcium silicate")) - -class FurnitureEnum(EnumDefinitionImpl): +class LithologyEnum(EnumDefinitionImpl): - cabinet = PermissibleValue(text="cabinet") - chair = PermissibleValue(text="chair") - desks = PermissibleValue(text="desks") + Basement = PermissibleValue(text="Basement") + Chalk = PermissibleValue(text="Chalk") + Chert = PermissibleValue(text="Chert") + Coal = PermissibleValue(text="Coal") + Conglomerate = PermissibleValue(text="Conglomerate") + Diatomite = PermissibleValue(text="Diatomite") + Dolomite = PermissibleValue(text="Dolomite") + Limestone = PermissibleValue(text="Limestone") + Sandstone = PermissibleValue(text="Sandstone") + Shale = PermissibleValue(text="Shale") + Siltstone = PermissibleValue(text="Siltstone") + Volcanic = PermissibleValue(text="Volcanic") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="FurnitureEnum", + name="LithologyEnum", ) -class GrowthHabitEnum(EnumDefinitionImpl): +class SampFloorEnum(EnumDefinitionImpl): - erect = PermissibleValue(text="erect") - spreading = PermissibleValue(text="spreading") - prostrate = PermissibleValue(text="prostrate") + basement = PermissibleValue(text="basement") + lobby = PermissibleValue(text="lobby") _defn = EnumDefinition( - name="GrowthHabitEnum", + name="SampFloorEnum", ) @classmethod def _addvals(cls): - setattr(cls, "semi-erect", - PermissibleValue(text="semi-erect")) - -class DoorTypeEnum(EnumDefinitionImpl): - - composite = PermissibleValue(text="composite") - metal = PermissibleValue(text="metal") - wooden = PermissibleValue(text="wooden") - - _defn = EnumDefinition( - name="DoorTypeEnum", - ) + setattr(cls, "1st floor", + PermissibleValue(text="1st floor")) + setattr(cls, "2nd floor", + PermissibleValue(text="2nd floor")) -class GenderRestroomEnum(EnumDefinitionImpl): +class DoorDirectEnum(EnumDefinitionImpl): - female = PermissibleValue(text="female") - male = PermissibleValue(text="male") - unisex = PermissibleValue(text="unisex") + inward = PermissibleValue(text="inward") + outward = PermissibleValue(text="outward") + sideways = PermissibleValue(text="sideways") _defn = EnumDefinition( - name="GenderRestroomEnum", + name="DoorDirectEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "all gender", - PermissibleValue(text="all gender")) - setattr(cls, "gender neurtral", - PermissibleValue(text="gender neurtral")) - setattr(cls, "male and female", - PermissibleValue(text="male and female")) - -class DoorCompTypeEnum(EnumDefinitionImpl): +class HeatDelivLocEnum(EnumDefinitionImpl): - revolving = PermissibleValue(text="revolving") - sliding = PermissibleValue(text="sliding") - telescopic = PermissibleValue(text="telescopic") + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") _defn = EnumDefinition( - name="DoorCompTypeEnum", + name="HeatDelivLocEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "metal covered", - PermissibleValue(text="metal covered")) - -class FreqCleanEnum(EnumDefinitionImpl): +class SrDepEnvEnum(EnumDefinitionImpl): - Daily = PermissibleValue(text="Daily") - Weekly = PermissibleValue(text="Weekly") - Monthly = PermissibleValue(text="Monthly") - Quarterly = PermissibleValue(text="Quarterly") - Annually = PermissibleValue(text="Annually") + Lacustine = PermissibleValue(text="Lacustine") + Fluvioldeltaic = PermissibleValue(text="Fluvioldeltaic") + Fluviomarine = PermissibleValue(text="Fluviomarine") + Marine = PermissibleValue(text="Marine") other = PermissibleValue(text="other") _defn = EnumDefinition( - name="FreqCleanEnum", + name="SrDepEnvEnum", ) -class SampCollectPointEnum(EnumDefinitionImpl): +class SrGeolAgeEnum(EnumDefinitionImpl): - well = PermissibleValue(text="well") - wellhead = PermissibleValue(text="wellhead") - separator = PermissibleValue(text="separator") + Archean = PermissibleValue(text="Archean") + Cambrian = PermissibleValue(text="Cambrian") + Carboniferous = PermissibleValue(text="Carboniferous") + Cenozoic = PermissibleValue(text="Cenozoic") + Cretaceous = PermissibleValue(text="Cretaceous") + Devonian = PermissibleValue(text="Devonian") + Jurassic = PermissibleValue(text="Jurassic") + Mesozoic = PermissibleValue(text="Mesozoic") + Neogene = PermissibleValue(text="Neogene") + Ordovician = PermissibleValue(text="Ordovician") + Paleogene = PermissibleValue(text="Paleogene") + Paleozoic = PermissibleValue(text="Paleozoic") + Permian = PermissibleValue(text="Permian") + Precambrian = PermissibleValue(text="Precambrian") + Proterozoic = PermissibleValue(text="Proterozoic") + Silurian = PermissibleValue(text="Silurian") + Triassic = PermissibleValue(text="Triassic") other = PermissibleValue(text="other") _defn = EnumDefinition( - name="SampCollectPointEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "test well", - PermissibleValue(text="test well")) - setattr(cls, "drilling rig", - PermissibleValue(text="drilling rig")) - setattr(cls, "storage tank", - PermissibleValue(text="storage tank")) - -class BuildingSettingEnum(EnumDefinitionImpl): - - urban = PermissibleValue(text="urban") - suburban = PermissibleValue(text="suburban") - exurban = PermissibleValue(text="exurban") - rural = PermissibleValue(text="rural") - - _defn = EnumDefinition( - name="BuildingSettingEnum", - ) - -class HandidnessEnum(EnumDefinitionImpl): - - ambidexterity = PermissibleValue(text="ambidexterity") - - _defn = EnumDefinition( - name="HandidnessEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "left handedness", - PermissibleValue(text="left handedness")) - setattr(cls, "mixed-handedness", - PermissibleValue(text="mixed-handedness")) - setattr(cls, "right handedness", - PermissibleValue(text="right handedness")) - -class WindowHorizPosEnum(EnumDefinitionImpl): - - left = PermissibleValue(text="left") - middle = PermissibleValue(text="middle") - right = PermissibleValue(text="right") - - _defn = EnumDefinition( - name="WindowHorizPosEnum", - ) - -class DoorLocEnum(EnumDefinitionImpl): - - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") - - _defn = EnumDefinition( - name="DoorLocEnum", + name="SrGeolAgeEnum", ) class ExtWallOrientEnum(EnumDefinitionImpl): @@ -7618,58 +7640,6 @@ class ExtWallOrientEnum(EnumDefinitionImpl): name="ExtWallOrientEnum", ) -class WeekdayEnum(EnumDefinitionImpl): - - Monday = PermissibleValue(text="Monday") - Tuesday = PermissibleValue(text="Tuesday") - Wednesday = PermissibleValue(text="Wednesday") - Thursday = PermissibleValue(text="Thursday") - Friday = PermissibleValue(text="Friday") - Saturday = PermissibleValue(text="Saturday") - Sunday = PermissibleValue(text="Sunday") - - _defn = EnumDefinition( - name="WeekdayEnum", - ) - -class LithologyEnum(EnumDefinitionImpl): - - Basement = PermissibleValue(text="Basement") - Chalk = PermissibleValue(text="Chalk") - Chert = PermissibleValue(text="Chert") - Coal = PermissibleValue(text="Coal") - Conglomerate = PermissibleValue(text="Conglomerate") - Diatomite = PermissibleValue(text="Diatomite") - Dolomite = PermissibleValue(text="Dolomite") - Limestone = PermissibleValue(text="Limestone") - Sandstone = PermissibleValue(text="Sandstone") - Shale = PermissibleValue(text="Shale") - Siltstone = PermissibleValue(text="Siltstone") - Volcanic = PermissibleValue(text="Volcanic") - other = PermissibleValue(text="other") - - _defn = EnumDefinition( - name="LithologyEnum", - ) - -class CeilTypeEnum(EnumDefinitionImpl): - - cathedral = PermissibleValue(text="cathedral") - dropped = PermissibleValue(text="dropped") - concave = PermissibleValue(text="concave") - coffered = PermissibleValue(text="coffered") - cove = PermissibleValue(text="cove") - stretched = PermissibleValue(text="stretched") - - _defn = EnumDefinition( - name="CeilTypeEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "barrel-shaped", - PermissibleValue(text="barrel-shaped")) - class FloorWaterMoldEnum(EnumDefinitionImpl): condensation = PermissibleValue(text="condensation") @@ -7697,406 +7667,287 @@ def _addvals(cls): setattr(cls, "bulging walls", PermissibleValue(text="bulging walls")) -class PlantSexEnum(EnumDefinitionImpl): +class WindowCondEnum(EnumDefinitionImpl): - Androdioecious = PermissibleValue(text="Androdioecious") - Androecious = PermissibleValue(text="Androecious") - Androgynous = PermissibleValue(text="Androgynous") - Androgynomonoecious = PermissibleValue(text="Androgynomonoecious") - Andromonoecious = PermissibleValue(text="Andromonoecious") - Bisexual = PermissibleValue(text="Bisexual") - Dichogamous = PermissibleValue(text="Dichogamous") - Diclinous = PermissibleValue(text="Diclinous") - Dioecious = PermissibleValue(text="Dioecious") - Gynodioecious = PermissibleValue(text="Gynodioecious") - Gynoecious = PermissibleValue(text="Gynoecious") - Gynomonoecious = PermissibleValue(text="Gynomonoecious") - Hermaphroditic = PermissibleValue(text="Hermaphroditic") - Imperfect = PermissibleValue(text="Imperfect") - Monoclinous = PermissibleValue(text="Monoclinous") - Monoecious = PermissibleValue(text="Monoecious") - Perfect = PermissibleValue(text="Perfect") - Polygamodioecious = PermissibleValue(text="Polygamodioecious") - Polygamomonoecious = PermissibleValue(text="Polygamomonoecious") - Polygamous = PermissibleValue(text="Polygamous") - Protandrous = PermissibleValue(text="Protandrous") - Protogynous = PermissibleValue(text="Protogynous") - Subandroecious = PermissibleValue(text="Subandroecious") - Subdioecious = PermissibleValue(text="Subdioecious") - Subgynoecious = PermissibleValue(text="Subgynoecious") - Synoecious = PermissibleValue(text="Synoecious") - Trimonoecious = PermissibleValue(text="Trimonoecious") - Trioecious = PermissibleValue(text="Trioecious") - Unisexual = PermissibleValue(text="Unisexual") + damaged = PermissibleValue(text="damaged") + new = PermissibleValue(text="new") + rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="PlantSexEnum", + name="WindowCondEnum", ) -class IntWallCondEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) + +class ShadingDeviceCondEnum(EnumDefinitionImpl): - new = PermissibleValue(text="new") damaged = PermissibleValue(text="damaged") + new = PermissibleValue(text="new") rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="IntWallCondEnum", + name="ShadingDeviceCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) setattr(cls, "needs repair", PermissibleValue(text="needs repair")) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) -class SurfMaterialEnum(EnumDefinitionImpl): +class WallLocEnum(EnumDefinitionImpl): - adobe = PermissibleValue(text="adobe") - carpet = PermissibleValue(text="carpet") - concrete = PermissibleValue(text="concrete") - glass = PermissibleValue(text="glass") - metal = PermissibleValue(text="metal") - paint = PermissibleValue(text="paint") - plastic = PermissibleValue(text="plastic") - stone = PermissibleValue(text="stone") - stucco = PermissibleValue(text="stucco") - tile = PermissibleValue(text="tile") - vinyl = PermissibleValue(text="vinyl") - wood = PermissibleValue(text="wood") - - _defn = EnumDefinition( - name="SurfMaterialEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "cinder blocks", - PermissibleValue(text="cinder blocks")) - setattr(cls, "hay bales", - PermissibleValue(text="hay bales")) - setattr(cls, "stainless steel", - PermissibleValue(text="stainless steel")) - -class IndoorSpaceEnum(EnumDefinitionImpl): - - bedroom = PermissibleValue(text="bedroom") - office = PermissibleValue(text="office") - bathroom = PermissibleValue(text="bathroom") - foyer = PermissibleValue(text="foyer") - kitchen = PermissibleValue(text="kitchen") - hallway = PermissibleValue(text="hallway") - elevator = PermissibleValue(text="elevator") - - _defn = EnumDefinition( - name="IndoorSpaceEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "locker room", - PermissibleValue(text="locker room")) - -class SeasonUseEnum(EnumDefinitionImpl): - - Spring = PermissibleValue(text="Spring") - Summer = PermissibleValue(text="Summer") - Fall = PermissibleValue(text="Fall") - Winter = PermissibleValue(text="Winter") - - _defn = EnumDefinition( - name="SeasonUseEnum", - ) - -class TidalStageEnum(EnumDefinitionImpl): - - _defn = EnumDefinition( - name="TidalStageEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "low tide", - PermissibleValue(text="low tide")) - setattr(cls, "ebb tide", - PermissibleValue(text="ebb tide")) - setattr(cls, "flood tide", - PermissibleValue(text="flood tide")) - setattr(cls, "high tide", - PermissibleValue(text="high tide")) - -class SpecificEnum(EnumDefinitionImpl): - - operation = PermissibleValue(text="operation") - construction = PermissibleValue(text="construction") - bid = PermissibleValue(text="bid") - design = PermissibleValue(text="design") - photos = PermissibleValue(text="photos") - - _defn = EnumDefinition( - name="SpecificEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "as built", - PermissibleValue(text="as built")) - -class VisMediaEnum(EnumDefinitionImpl): - - photos = PermissibleValue(text="photos") - videos = PermissibleValue(text="videos") - interiors = PermissibleValue(text="interiors") - equipment = PermissibleValue(text="equipment") + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") _defn = EnumDefinition( - name="VisMediaEnum", + name="WallLocEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "commonly of the building", - PermissibleValue(text="commonly of the building")) - setattr(cls, "site context (adjacent buildings, vegetation, terrain, streets)", - PermissibleValue(text="site context (adjacent buildings, vegetation, terrain, streets)")) - setattr(cls, "3D scans", - PermissibleValue(text="3D scans")) - -class WallFinishMatEnum(EnumDefinitionImpl): +class DoorMatEnum(EnumDefinitionImpl): - plaster = PermissibleValue(text="plaster") - tile = PermissibleValue(text="tile") - terrazzo = PermissibleValue(text="terrazzo") - wood = PermissibleValue(text="wood") + aluminum = PermissibleValue(text="aluminum") + fiberboard = PermissibleValue(text="fiberboard") + fiberglass = PermissibleValue(text="fiberglass") metal = PermissibleValue(text="metal") - masonry = PermissibleValue(text="masonry") - - _defn = EnumDefinition( - name="WallFinishMatEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "gypsum plaster", - PermissibleValue(text="gypsum plaster")) - setattr(cls, "veneer plaster", - PermissibleValue(text="veneer plaster")) - setattr(cls, "gypsum board", - PermissibleValue(text="gypsum board")) - setattr(cls, "stone facing", - PermissibleValue(text="stone facing")) - setattr(cls, "acoustical treatment", - PermissibleValue(text="acoustical treatment")) - -class ShadingDeviceTypeEnum(EnumDefinitionImpl): - - tree = PermissibleValue(text="tree") - trellis = PermissibleValue(text="trellis") + vinyl = PermissibleValue(text="vinyl") + wood = PermissibleValue(text="wood") _defn = EnumDefinition( - name="ShadingDeviceTypeEnum", + name="DoorMatEnum", ) @classmethod def _addvals(cls): - setattr(cls, "bahama shutters", - PermissibleValue(text="bahama shutters")) - setattr(cls, "exterior roll blind", - PermissibleValue(text="exterior roll blind")) - setattr(cls, "gambrel awning", - PermissibleValue(text="gambrel awning")) - setattr(cls, "hood awning", - PermissibleValue(text="hood awning")) - setattr(cls, "porchroller awning", - PermissibleValue(text="porchroller awning")) - setattr(cls, "sarasota shutters", - PermissibleValue(text="sarasota shutters")) - setattr(cls, "slatted aluminum", - PermissibleValue(text="slatted aluminum")) - setattr(cls, "solid aluminum awning", - PermissibleValue(text="solid aluminum awning")) - setattr(cls, "sun screen", - PermissibleValue(text="sun screen")) - setattr(cls, "venetian awning", - PermissibleValue(text="venetian awning")) - -class SedimentTypeEnum(EnumDefinitionImpl): - - biogenous = PermissibleValue(text="biogenous") - cosmogenous = PermissibleValue(text="cosmogenous") - hydrogenous = PermissibleValue(text="hydrogenous") - lithogenous = PermissibleValue(text="lithogenous") - - _defn = EnumDefinition( - name="SedimentTypeEnum", - ) - -class WindowLocEnum(EnumDefinitionImpl): - - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") - - _defn = EnumDefinition( - name="WindowLocEnum", - ) + setattr(cls, "cellular PVC", + PermissibleValue(text="cellular PVC")) + setattr(cls, "engineered plastic", + PermissibleValue(text="engineered plastic")) + setattr(cls, "thermoplastic alloy", + PermissibleValue(text="thermoplastic alloy")) + setattr(cls, "wood/plastic composite", + PermissibleValue(text="wood/plastic composite")) -class HeatDelivLocEnum(EnumDefinitionImpl): +class PlantSexEnum(EnumDefinitionImpl): - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") + Androdioecious = PermissibleValue(text="Androdioecious") + Androecious = PermissibleValue(text="Androecious") + Androgynous = PermissibleValue(text="Androgynous") + Androgynomonoecious = PermissibleValue(text="Androgynomonoecious") + Andromonoecious = PermissibleValue(text="Andromonoecious") + Bisexual = PermissibleValue(text="Bisexual") + Dichogamous = PermissibleValue(text="Dichogamous") + Diclinous = PermissibleValue(text="Diclinous") + Dioecious = PermissibleValue(text="Dioecious") + Gynodioecious = PermissibleValue(text="Gynodioecious") + Gynoecious = PermissibleValue(text="Gynoecious") + Gynomonoecious = PermissibleValue(text="Gynomonoecious") + Hermaphroditic = PermissibleValue(text="Hermaphroditic") + Imperfect = PermissibleValue(text="Imperfect") + Monoclinous = PermissibleValue(text="Monoclinous") + Monoecious = PermissibleValue(text="Monoecious") + Perfect = PermissibleValue(text="Perfect") + Polygamodioecious = PermissibleValue(text="Polygamodioecious") + Polygamomonoecious = PermissibleValue(text="Polygamomonoecious") + Polygamous = PermissibleValue(text="Polygamous") + Protandrous = PermissibleValue(text="Protandrous") + Protogynous = PermissibleValue(text="Protogynous") + Subandroecious = PermissibleValue(text="Subandroecious") + Subdioecious = PermissibleValue(text="Subdioecious") + Subgynoecious = PermissibleValue(text="Subgynoecious") + Synoecious = PermissibleValue(text="Synoecious") + Trimonoecious = PermissibleValue(text="Trimonoecious") + Trioecious = PermissibleValue(text="Trioecious") + Unisexual = PermissibleValue(text="Unisexual") _defn = EnumDefinition( - name="HeatDelivLocEnum", + name="PlantSexEnum", ) -class TrainStatLocEnum(EnumDefinitionImpl): +class WallTextureEnum(EnumDefinitionImpl): - riverside = PermissibleValue(text="riverside") + knockdown = PermissibleValue(text="knockdown") + popcorn = PermissibleValue(text="popcorn") + smooth = PermissibleValue(text="smooth") + swirl = PermissibleValue(text="swirl") _defn = EnumDefinition( - name="TrainStatLocEnum", + name="WallTextureEnum", ) @classmethod def _addvals(cls): - setattr(cls, "south station above ground", - PermissibleValue(text="south station above ground")) - setattr(cls, "south station underground", - PermissibleValue(text="south station underground")) - setattr(cls, "south station amtrak", - PermissibleValue(text="south station amtrak")) - setattr(cls, "forest hills", - PermissibleValue(text="forest hills")) + setattr(cls, "crows feet", + PermissibleValue(text="crows feet")) + setattr(cls, "crows-foot stomp", + PermissibleValue(text="crows-foot stomp")) + setattr(cls, "", + PermissibleValue(text="")) + setattr(cls, "double skip", + PermissibleValue(text="double skip")) + setattr(cls, "hawk and trowel", + PermissibleValue(text="hawk and trowel")) + setattr(cls, "orange peel", + PermissibleValue(text="orange peel")) + setattr(cls, "rosebud stomp", + PermissibleValue(text="rosebud stomp")) + setattr(cls, "Santa-Fe texture", + PermissibleValue(text="Santa-Fe texture")) + setattr(cls, "skip trowel", + PermissibleValue(text="skip trowel")) + setattr(cls, "stomp knockdown", + PermissibleValue(text="stomp knockdown")) -class WallSurfTreatmentEnum(EnumDefinitionImpl): +class SurfMaterialEnum(EnumDefinitionImpl): - painted = PermissibleValue(text="painted") - paneling = PermissibleValue(text="paneling") + adobe = PermissibleValue(text="adobe") + carpet = PermissibleValue(text="carpet") + concrete = PermissibleValue(text="concrete") + glass = PermissibleValue(text="glass") + metal = PermissibleValue(text="metal") + paint = PermissibleValue(text="paint") + plastic = PermissibleValue(text="plastic") + stone = PermissibleValue(text="stone") stucco = PermissibleValue(text="stucco") - fabric = PermissibleValue(text="fabric") - - _defn = EnumDefinition( - name="WallSurfTreatmentEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "wall paper", - PermissibleValue(text="wall paper")) - setattr(cls, "no treatment", - PermissibleValue(text="no treatment")) - -class QuadPosEnum(EnumDefinitionImpl): + tile = PermissibleValue(text="tile") + vinyl = PermissibleValue(text="vinyl") + wood = PermissibleValue(text="wood") _defn = EnumDefinition( - name="QuadPosEnum", + name="SurfMaterialEnum", ) @classmethod def _addvals(cls): - setattr(cls, "North side", - PermissibleValue(text="North side")) - setattr(cls, "West side", - PermissibleValue(text="West side")) - setattr(cls, "South side", - PermissibleValue(text="South side")) - setattr(cls, "East side", - PermissibleValue(text="East side")) + setattr(cls, "cinder blocks", + PermissibleValue(text="cinder blocks")) + setattr(cls, "hay bales", + PermissibleValue(text="hay bales")) + setattr(cls, "stainless steel", + PermissibleValue(text="stainless steel")) -class SrKerogTypeEnum(EnumDefinitionImpl): +class BioticRelationshipEnum(EnumDefinitionImpl): - other = PermissibleValue(text="other") + parasite = PermissibleValue(text="parasite") + commensal = PermissibleValue(text="commensal") + symbiont = PermissibleValue(text="symbiont") _defn = EnumDefinition( - name="SrKerogTypeEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "Type I", - PermissibleValue(text="Type I")) - setattr(cls, "Type II", - PermissibleValue(text="Type II")) - setattr(cls, "Type III", - PermissibleValue(text="Type III")) - setattr(cls, "Type IV", - PermissibleValue(text="Type IV")) + name="BioticRelationshipEnum", + ) -class WaterFeatTypeEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "free living", + PermissibleValue(text="free living")) - fountain = PermissibleValue(text="fountain") - pool = PermissibleValue(text="pool") - stream = PermissibleValue(text="stream") - waterfall = PermissibleValue(text="waterfall") +class SampSubtypeEnum(EnumDefinitionImpl): + + biofilm = PermissibleValue(text="biofilm") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="WaterFeatTypeEnum", + name="SampSubtypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "standing feature", - PermissibleValue(text="standing feature")) + setattr(cls, "oil phase", + PermissibleValue(text="oil phase")) + setattr(cls, "water phase", + PermissibleValue(text="water phase")) + setattr(cls, "not applicable", + PermissibleValue(text="not applicable")) -class CeilCondEnum(EnumDefinitionImpl): +class HcrEnum(EnumDefinitionImpl): - new = PermissibleValue(text="new") - damaged = PermissibleValue(text="damaged") - rupture = PermissibleValue(text="rupture") + Coalbed = PermissibleValue(text="Coalbed") + Shale = PermissibleValue(text="Shale") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="CeilCondEnum", + name="HcrEnum", ) @classmethod def _addvals(cls): - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) + setattr(cls, "Oil Reservoir", + PermissibleValue(text="Oil Reservoir")) + setattr(cls, "Gas Reservoir", + PermissibleValue(text="Gas Reservoir")) + setattr(cls, "Oil Sand", + PermissibleValue(text="Oil Sand")) + setattr(cls, "Tight Oil Reservoir", + PermissibleValue(text="Tight Oil Reservoir")) + setattr(cls, "Tight Gas Reservoir", + PermissibleValue(text="Tight Gas Reservoir")) -class SampMdEnum(EnumDefinitionImpl): +class WallFinishMatEnum(EnumDefinitionImpl): - DF = PermissibleValue(text="DF") - RT = PermissibleValue(text="RT") - KB = PermissibleValue(text="KB") - MSL = PermissibleValue(text="MSL") - other = PermissibleValue(text="other") + plaster = PermissibleValue(text="plaster") + tile = PermissibleValue(text="tile") + terrazzo = PermissibleValue(text="terrazzo") + wood = PermissibleValue(text="wood") + metal = PermissibleValue(text="metal") + masonry = PermissibleValue(text="masonry") _defn = EnumDefinition( - name="SampMdEnum", + name="WallFinishMatEnum", ) -class TrainLineEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "gypsum plaster", + PermissibleValue(text="gypsum plaster")) + setattr(cls, "veneer plaster", + PermissibleValue(text="veneer plaster")) + setattr(cls, "gypsum board", + PermissibleValue(text="gypsum board")) + setattr(cls, "stone facing", + PermissibleValue(text="stone facing")) + setattr(cls, "acoustical treatment", + PermissibleValue(text="acoustical treatment")) - red = PermissibleValue(text="red") - green = PermissibleValue(text="green") - orange = PermissibleValue(text="orange") +class SeasonUseEnum(EnumDefinitionImpl): + + Spring = PermissibleValue(text="Spring") + Summer = PermissibleValue(text="Summer") + Fall = PermissibleValue(text="Fall") + Winter = PermissibleValue(text="Winter") _defn = EnumDefinition( - name="TrainLineEnum", + name="SeasonUseEnum", ) -class SampDisStageEnum(EnumDefinitionImpl): +class FloorStrucEnum(EnumDefinitionImpl): - dissemination = PermissibleValue(text="dissemination") - infection = PermissibleValue(text="infection") - inoculation = PermissibleValue(text="inoculation") - penetration = PermissibleValue(text="penetration") - other = PermissibleValue(text="other") + balcony = PermissibleValue(text="balcony") + concrete = PermissibleValue(text="concrete") _defn = EnumDefinition( - name="SampDisStageEnum", + name="FloorStrucEnum", ) @classmethod def _addvals(cls): - setattr(cls, "growth and reproduction", - PermissibleValue(text="growth and reproduction")) + setattr(cls, "floating floor", + PermissibleValue(text="floating floor")) + setattr(cls, "glass floor", + PermissibleValue(text="glass floor")) + setattr(cls, "raised floor", + PermissibleValue(text="raised floor")) + setattr(cls, "sprung floor", + PermissibleValue(text="sprung floor")) + setattr(cls, "wood-framed", + PermissibleValue(text="wood-framed")) class DeposEnvEnum(EnumDefinitionImpl): @@ -8139,105 +7990,159 @@ def _addvals(cls): setattr(cls, "Other - Volcanic", PermissibleValue(text="Other - Volcanic")) -class MechStrucEnum(EnumDefinitionImpl): +class RoomLocEnum(EnumDefinitionImpl): - subway = PermissibleValue(text="subway") - coach = PermissibleValue(text="coach") - carriage = PermissibleValue(text="carriage") + _defn = EnumDefinition( + name="RoomLocEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "corner room", + PermissibleValue(text="corner room")) + setattr(cls, "interior room", + PermissibleValue(text="interior room")) + setattr(cls, "exterior wall", + PermissibleValue(text="exterior wall")) + +class ProfilePositionEnum(EnumDefinitionImpl): + + summit = PermissibleValue(text="summit") + shoulder = PermissibleValue(text="shoulder") + backslope = PermissibleValue(text="backslope") + footslope = PermissibleValue(text="footslope") + toeslope = PermissibleValue(text="toeslope") + + _defn = EnumDefinition( + name="ProfilePositionEnum", + ) + +class IndoorSpaceEnum(EnumDefinitionImpl): + + bedroom = PermissibleValue(text="bedroom") + office = PermissibleValue(text="office") + bathroom = PermissibleValue(text="bathroom") + foyer = PermissibleValue(text="foyer") + kitchen = PermissibleValue(text="kitchen") + hallway = PermissibleValue(text="hallway") elevator = PermissibleValue(text="elevator") - escalator = PermissibleValue(text="escalator") - boat = PermissibleValue(text="boat") - train = PermissibleValue(text="train") - car = PermissibleValue(text="car") - bus = PermissibleValue(text="bus") _defn = EnumDefinition( - name="MechStrucEnum", + name="IndoorSpaceEnum", ) -class SampFloorEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "locker room", + PermissibleValue(text="locker room")) - basement = PermissibleValue(text="basement") - lobby = PermissibleValue(text="lobby") +class SampCaptStatusEnum(EnumDefinitionImpl): + + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="SampFloorEnum", + name="SampCaptStatusEnum", ) @classmethod def _addvals(cls): - setattr(cls, "1st floor", - PermissibleValue(text="1st floor")) - setattr(cls, "2nd floor", - PermissibleValue(text="2nd floor")) + setattr(cls, "active surveillance in response to an outbreak", + PermissibleValue(text="active surveillance in response to an outbreak")) + setattr(cls, "active surveillance not initiated by an outbreak", + PermissibleValue(text="active surveillance not initiated by an outbreak")) + setattr(cls, "farm sample", + PermissibleValue(text="farm sample")) + setattr(cls, "market sample", + PermissibleValue(text="market sample")) -class SrGeolAgeEnum(EnumDefinitionImpl): +class FurnitureEnum(EnumDefinitionImpl): - Archean = PermissibleValue(text="Archean") - Cambrian = PermissibleValue(text="Cambrian") - Carboniferous = PermissibleValue(text="Carboniferous") - Cenozoic = PermissibleValue(text="Cenozoic") - Cretaceous = PermissibleValue(text="Cretaceous") - Devonian = PermissibleValue(text="Devonian") - Jurassic = PermissibleValue(text="Jurassic") - Mesozoic = PermissibleValue(text="Mesozoic") - Neogene = PermissibleValue(text="Neogene") - Ordovician = PermissibleValue(text="Ordovician") - Paleogene = PermissibleValue(text="Paleogene") - Paleozoic = PermissibleValue(text="Paleozoic") - Permian = PermissibleValue(text="Permian") - Precambrian = PermissibleValue(text="Precambrian") - Proterozoic = PermissibleValue(text="Proterozoic") - Silurian = PermissibleValue(text="Silurian") - Triassic = PermissibleValue(text="Triassic") + cabinet = PermissibleValue(text="cabinet") + chair = PermissibleValue(text="chair") + desks = PermissibleValue(text="desks") + + _defn = EnumDefinition( + name="FurnitureEnum", + ) + +class HcProducedEnum(EnumDefinitionImpl): + + Oil = PermissibleValue(text="Oil") + Gas = PermissibleValue(text="Gas") + Bitumen = PermissibleValue(text="Bitumen") other = PermissibleValue(text="other") _defn = EnumDefinition( - name="SrGeolAgeEnum", + name="HcProducedEnum", ) -class WindowTypeEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "Gas-Condensate", + PermissibleValue(text="Gas-Condensate")) + setattr(cls, "Coalbed Methane", + PermissibleValue(text="Coalbed Methane")) + +class BiolStatEnum(EnumDefinitionImpl): + + wild = PermissibleValue(text="wild") + natural = PermissibleValue(text="natural") + hybrid = PermissibleValue(text="hybrid") + mutant = PermissibleValue(text="mutant") _defn = EnumDefinition( - name="WindowTypeEnum", + name="BiolStatEnum", ) @classmethod def _addvals(cls): - setattr(cls, "single-hung sash window", - PermissibleValue(text="single-hung sash window")) - setattr(cls, "horizontal sash window", - PermissibleValue(text="horizontal sash window")) - setattr(cls, "fixed window", - PermissibleValue(text="fixed window")) + setattr(cls, "semi-natural", + PermissibleValue(text="semi-natural")) + setattr(cls, "inbred line", + PermissibleValue(text="inbred line")) + setattr(cls, "breeder's line", + PermissibleValue(text="breeder's line")) + setattr(cls, "clonal selection", + PermissibleValue(text="clonal selection")) + +class WindowMatEnum(EnumDefinitionImpl): + + clad = PermissibleValue(text="clad") + fiberglass = PermissibleValue(text="fiberglass") + metal = PermissibleValue(text="metal") + vinyl = PermissibleValue(text="vinyl") + wood = PermissibleValue(text="wood") + + _defn = EnumDefinition( + name="WindowMatEnum", + ) -class BuildOccupTypeEnum(EnumDefinitionImpl): +class RoomSampPosEnum(EnumDefinitionImpl): - office = PermissibleValue(text="office") - market = PermissibleValue(text="market") - restaurant = PermissibleValue(text="restaurant") - residence = PermissibleValue(text="residence") - school = PermissibleValue(text="school") - residential = PermissibleValue(text="residential") - commercial = PermissibleValue(text="commercial") - airport = PermissibleValue(text="airport") + center = PermissibleValue(text="center") _defn = EnumDefinition( - name="BuildOccupTypeEnum", + name="RoomSampPosEnum", ) @classmethod def _addvals(cls): - setattr(cls, "low rise", - PermissibleValue(text="low rise")) - setattr(cls, "high rise", - PermissibleValue(text="high rise")) - setattr(cls, "wood framed", - PermissibleValue(text="wood framed")) - setattr(cls, "health care", - PermissibleValue(text="health care")) - setattr(cls, "sports complex", - PermissibleValue(text="sports complex")) + setattr(cls, "north corner", + PermissibleValue(text="north corner")) + setattr(cls, "south corner", + PermissibleValue(text="south corner")) + setattr(cls, "west corner", + PermissibleValue(text="west corner")) + setattr(cls, "east corner", + PermissibleValue(text="east corner")) + setattr(cls, "northeast corner", + PermissibleValue(text="northeast corner")) + setattr(cls, "northwest corner", + PermissibleValue(text="northwest corner")) + setattr(cls, "southeast corner", + PermissibleValue(text="southeast corner")) + setattr(cls, "southwest corner", + PermissibleValue(text="southwest corner")) class SurfAirContEnum(EnumDefinitionImpl): @@ -8261,143 +8166,246 @@ def _addvals(cls): setattr(cls, "biological contaminants", PermissibleValue(text="biological contaminants")) -class DoorDirectEnum(EnumDefinitionImpl): +class DoorTypeEnum(EnumDefinitionImpl): - inward = PermissibleValue(text="inward") - outward = PermissibleValue(text="outward") - sideways = PermissibleValue(text="sideways") + composite = PermissibleValue(text="composite") + metal = PermissibleValue(text="metal") + wooden = PermissibleValue(text="wooden") _defn = EnumDefinition( - name="DoorDirectEnum", + name="DoorTypeEnum", ) -class FilterTypeEnum(EnumDefinitionImpl): +class OrganismCountEnum(EnumDefinitionImpl): - HEPA = PermissibleValue(text="HEPA") - electrostatic = PermissibleValue(text="electrostatic") + ATP = PermissibleValue(text="ATP") + MPN = PermissibleValue(text="MPN") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="FilterTypeEnum", + name="OrganismCountEnum", + ) + +class SedimentTypeEnum(EnumDefinitionImpl): + + biogenous = PermissibleValue(text="biogenous") + cosmogenous = PermissibleValue(text="cosmogenous") + hydrogenous = PermissibleValue(text="hydrogenous") + lithogenous = PermissibleValue(text="lithogenous") + + _defn = EnumDefinition( + name="SedimentTypeEnum", + ) + +class SubstructureTypeEnum(EnumDefinitionImpl): + + crawlspace = PermissibleValue(text="crawlspace") + basement = PermissibleValue(text="basement") + + _defn = EnumDefinition( + name="SubstructureTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "particulate air filter", - PermissibleValue(text="particulate air filter")) - setattr(cls, "chemical air filter", - PermissibleValue(text="chemical air filter")) - setattr(cls, "low-MERV pleated media", - PermissibleValue(text="low-MERV pleated media")) - setattr(cls, "gas-phase or ultraviolet air treatments", - PermissibleValue(text="gas-phase or ultraviolet air treatments")) + setattr(cls, "slab on grade", + PermissibleValue(text="slab on grade")) -class FloorStrucEnum(EnumDefinitionImpl): +class IndoorSurfEnum(EnumDefinitionImpl): - balcony = PermissibleValue(text="balcony") + cabinet = PermissibleValue(text="cabinet") + ceiling = PermissibleValue(text="ceiling") + door = PermissibleValue(text="door") + shelving = PermissibleValue(text="shelving") + window = PermissibleValue(text="window") + wall = PermissibleValue(text="wall") + + _defn = EnumDefinition( + name="IndoorSurfEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "counter top", + PermissibleValue(text="counter top")) + setattr(cls, "vent cover", + PermissibleValue(text="vent cover")) + +class WallSurfTreatmentEnum(EnumDefinitionImpl): + + painted = PermissibleValue(text="painted") + paneling = PermissibleValue(text="paneling") + stucco = PermissibleValue(text="stucco") + fabric = PermissibleValue(text="fabric") + + _defn = EnumDefinition( + name="WallSurfTreatmentEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "wall paper", + PermissibleValue(text="wall paper")) + setattr(cls, "no treatment", + PermissibleValue(text="no treatment")) + +class DrawingsEnum(EnumDefinitionImpl): + + operation = PermissibleValue(text="operation") + construction = PermissibleValue(text="construction") + bid = PermissibleValue(text="bid") + design = PermissibleValue(text="design") + diagram = PermissibleValue(text="diagram") + sketch = PermissibleValue(text="sketch") + + _defn = EnumDefinition( + name="DrawingsEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "as built", + PermissibleValue(text="as built")) + setattr(cls, "building navigation map", + PermissibleValue(text="building navigation map")) + +class FloorFinishMatEnum(EnumDefinitionImpl): + + tile = PermissibleValue(text="tile") + carpet = PermissibleValue(text="carpet") + rug = PermissibleValue(text="rug") + lineoleum = PermissibleValue(text="lineoleum") + stone = PermissibleValue(text="stone") + bamboo = PermissibleValue(text="bamboo") + cork = PermissibleValue(text="cork") + terrazo = PermissibleValue(text="terrazo") concrete = PermissibleValue(text="concrete") + none = PermissibleValue(text="none") + sealed = PermissibleValue(text="sealed") + paint = PermissibleValue(text="paint") _defn = EnumDefinition( - name="FloorStrucEnum", + name="FloorFinishMatEnum", ) @classmethod def _addvals(cls): - setattr(cls, "floating floor", - PermissibleValue(text="floating floor")) - setattr(cls, "glass floor", - PermissibleValue(text="glass floor")) - setattr(cls, "raised floor", - PermissibleValue(text="raised floor")) - setattr(cls, "sprung floor", - PermissibleValue(text="sprung floor")) - setattr(cls, "wood-framed", - PermissibleValue(text="wood-framed")) + setattr(cls, "wood strip or parquet", + PermissibleValue(text="wood strip or parquet")) + setattr(cls, "laminate wood", + PermissibleValue(text="laminate wood")) + setattr(cls, "vinyl composition tile", + PermissibleValue(text="vinyl composition tile")) + setattr(cls, "sheet vinyl", + PermissibleValue(text="sheet vinyl")) + setattr(cls, "clear finish", + PermissibleValue(text="clear finish")) + setattr(cls, "none or unfinished", + PermissibleValue(text="none or unfinished")) -class HeatCoolTypeEnum(EnumDefinitionImpl): +class FloorCondEnum(EnumDefinitionImpl): + + new = PermissibleValue(text="new") + damaged = PermissibleValue(text="damaged") + rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="HeatCoolTypeEnum", + name="FloorCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "radiant system", - PermissibleValue(text="radiant system")) - setattr(cls, "heat pump", - PermissibleValue(text="heat pump")) - setattr(cls, "forced air system", - PermissibleValue(text="forced air system")) - setattr(cls, "steam forced heat", - PermissibleValue(text="steam forced heat")) - setattr(cls, "wood stove", - PermissibleValue(text="wood stove")) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) -class TillageEnum(EnumDefinitionImpl): +class CurLandUseEnum(EnumDefinitionImpl): - drill = PermissibleValue(text="drill") - chisel = PermissibleValue(text="chisel") - tined = PermissibleValue(text="tined") - mouldboard = PermissibleValue(text="mouldboard") + badlands = PermissibleValue(text="badlands") + cities = PermissibleValue(text="cities") + conifers = PermissibleValue(text="conifers") + farmstead = PermissibleValue(text="farmstead") + gravel = PermissibleValue(text="gravel") + hardwoods = PermissibleValue(text="hardwoods") + hayland = PermissibleValue(text="hayland") + marshlands = PermissibleValue(text="marshlands") + meadows = PermissibleValue(text="meadows") + mudflats = PermissibleValue(text="mudflats") + pastureland = PermissibleValue(text="pastureland") + rainforest = PermissibleValue(text="rainforest") + rangeland = PermissibleValue(text="rangeland") + rock = PermissibleValue(text="rock") + sand = PermissibleValue(text="sand") + swamp = PermissibleValue(text="swamp") + tropical = PermissibleValue(text="tropical") + tundra = PermissibleValue(text="tundra") _defn = EnumDefinition( - name="TillageEnum", + name="CurLandUseEnum", ) @classmethod def _addvals(cls): - setattr(cls, "cutting disc", - PermissibleValue(text="cutting disc")) - setattr(cls, "ridge till", - PermissibleValue(text="ridge till")) - setattr(cls, "strip tillage", - PermissibleValue(text="strip tillage")) - setattr(cls, "zonal tillage", - PermissibleValue(text="zonal tillage")) - setattr(cls, "disc plough", - PermissibleValue(text="disc plough")) + setattr(cls, "crop trees", + PermissibleValue(text="crop trees")) + setattr(cls, "horticultural plants", + PermissibleValue(text="horticultural plants")) + setattr(cls, "industrial areas", + PermissibleValue(text="industrial areas")) + setattr(cls, "intermixed hardwood and conifers", + PermissibleValue(text="intermixed hardwood and conifers")) + setattr(cls, "mines/quarries", + PermissibleValue(text="mines/quarries")) + setattr(cls, "oil waste areas", + PermissibleValue(text="oil waste areas")) + setattr(cls, "permanent snow or ice", + PermissibleValue(text="permanent snow or ice")) + setattr(cls, "roads/railroads", + PermissibleValue(text="roads/railroads")) + setattr(cls, "row crops", + PermissibleValue(text="row crops")) + setattr(cls, "saline seeps", + PermissibleValue(text="saline seeps")) + setattr(cls, "salt flats", + PermissibleValue(text="salt flats")) + setattr(cls, "shrub crops", + PermissibleValue(text="shrub crops")) + setattr(cls, "shrub land", + PermissibleValue(text="shrub land")) + setattr(cls, "small grains", + PermissibleValue(text="small grains")) + setattr(cls, "successional shrub land", + PermissibleValue(text="successional shrub land")) + setattr(cls, "vegetable crops", + PermissibleValue(text="vegetable crops")) + setattr(cls, "vine crops", + PermissibleValue(text="vine crops")) -class HcrGeolAgeEnum(EnumDefinitionImpl): +class WindowHorizPosEnum(EnumDefinitionImpl): - Archean = PermissibleValue(text="Archean") - Cambrian = PermissibleValue(text="Cambrian") - Carboniferous = PermissibleValue(text="Carboniferous") - Cenozoic = PermissibleValue(text="Cenozoic") - Cretaceous = PermissibleValue(text="Cretaceous") - Devonian = PermissibleValue(text="Devonian") - Jurassic = PermissibleValue(text="Jurassic") - Mesozoic = PermissibleValue(text="Mesozoic") - Neogene = PermissibleValue(text="Neogene") - Ordovician = PermissibleValue(text="Ordovician") - Paleogene = PermissibleValue(text="Paleogene") - Paleozoic = PermissibleValue(text="Paleozoic") - Permian = PermissibleValue(text="Permian") - Precambrian = PermissibleValue(text="Precambrian") - Proterozoic = PermissibleValue(text="Proterozoic") - Silurian = PermissibleValue(text="Silurian") - Triassic = PermissibleValue(text="Triassic") - other = PermissibleValue(text="other") + left = PermissibleValue(text="left") + middle = PermissibleValue(text="middle") + right = PermissibleValue(text="right") _defn = EnumDefinition( - name="HcrGeolAgeEnum", + name="WindowHorizPosEnum", ) -class SampSubtypeEnum(EnumDefinitionImpl): - - biofilm = PermissibleValue(text="biofilm") - other = PermissibleValue(text="other") +class RelSampLocEnum(EnumDefinitionImpl): _defn = EnumDefinition( - name="SampSubtypeEnum", + name="RelSampLocEnum", ) @classmethod def _addvals(cls): - setattr(cls, "oil phase", - PermissibleValue(text="oil phase")) - setattr(cls, "water phase", - PermissibleValue(text="water phase")) - setattr(cls, "not applicable", - PermissibleValue(text="not applicable")) + setattr(cls, "edge of car", + PermissibleValue(text="edge of car")) + setattr(cls, "center of car", + PermissibleValue(text="center of car")) + setattr(cls, "under a seat", + PermissibleValue(text="under a seat")) class RoomConnectedEnum(EnumDefinitionImpl): @@ -8423,141 +8431,133 @@ def _addvals(cls): setattr(cls, "mail room", PermissibleValue(text="mail room")) -class FloorCondEnum(EnumDefinitionImpl): +class FreqCleanEnum(EnumDefinitionImpl): - new = PermissibleValue(text="new") - damaged = PermissibleValue(text="damaged") - rupture = PermissibleValue(text="rupture") + Daily = PermissibleValue(text="Daily") + Weekly = PermissibleValue(text="Weekly") + Monthly = PermissibleValue(text="Monthly") + Quarterly = PermissibleValue(text="Quarterly") + Annually = PermissibleValue(text="Annually") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="FloorCondEnum", + name="FreqCleanEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) - -class HcProducedEnum(EnumDefinitionImpl): +class BuildingSettingEnum(EnumDefinitionImpl): - Oil = PermissibleValue(text="Oil") - Gas = PermissibleValue(text="Gas") - Bitumen = PermissibleValue(text="Bitumen") - other = PermissibleValue(text="other") + urban = PermissibleValue(text="urban") + suburban = PermissibleValue(text="suburban") + exurban = PermissibleValue(text="exurban") + rural = PermissibleValue(text="rural") _defn = EnumDefinition( - name="HcProducedEnum", + name="BuildingSettingEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "Gas-Condensate", - PermissibleValue(text="Gas-Condensate")) - setattr(cls, "Coalbed Methane", - PermissibleValue(text="Coalbed Methane")) +class ExtWindowOrientEnum(EnumDefinitionImpl): -class DoorTypeWoodEnum(EnumDefinitionImpl): + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") + northeast = PermissibleValue(text="northeast") + southeast = PermissibleValue(text="southeast") + southwest = PermissibleValue(text="southwest") + northwest = PermissibleValue(text="northwest") - battened = PermissibleValue(text="battened") - flush = PermissibleValue(text="flush") - louvered = PermissibleValue(text="louvered") + _defn = EnumDefinition( + name="ExtWindowOrientEnum", + ) + +class HandidnessEnum(EnumDefinitionImpl): + + ambidexterity = PermissibleValue(text="ambidexterity") _defn = EnumDefinition( - name="DoorTypeWoodEnum", + name="HandidnessEnum", ) @classmethod def _addvals(cls): - setattr(cls, "bettened and ledged", - PermissibleValue(text="bettened and ledged")) - setattr(cls, "ledged and braced", - PermissibleValue(text="ledged and braced")) - setattr(cls, "ledged and framed", - PermissibleValue(text="ledged and framed")) - setattr(cls, "ledged, braced and frame", - PermissibleValue(text="ledged, braced and frame")) - setattr(cls, "framed and paneled", - PermissibleValue(text="framed and paneled")) - setattr(cls, "glashed or sash", - PermissibleValue(text="glashed or sash")) - setattr(cls, "wire gauged", - PermissibleValue(text="wire gauged")) + setattr(cls, "left handedness", + PermissibleValue(text="left handedness")) + setattr(cls, "mixed-handedness", + PermissibleValue(text="mixed-handedness")) + setattr(cls, "right handedness", + PermissibleValue(text="right handedness")) -class HcrEnum(EnumDefinitionImpl): +class HostSexEnum(EnumDefinitionImpl): - Coalbed = PermissibleValue(text="Coalbed") - Shale = PermissibleValue(text="Shale") - other = PermissibleValue(text="other") + female = PermissibleValue(text="female") + hermaphrodite = PermissibleValue(text="hermaphrodite") + male = PermissibleValue(text="male") + neuter = PermissibleValue(text="neuter") _defn = EnumDefinition( - name="HcrEnum", + name="HostSexEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "Oil Reservoir", - PermissibleValue(text="Oil Reservoir")) - setattr(cls, "Gas Reservoir", - PermissibleValue(text="Gas Reservoir")) - setattr(cls, "Oil Sand", - PermissibleValue(text="Oil Sand")) - setattr(cls, "Tight Oil Reservoir", - PermissibleValue(text="Tight Oil Reservoir")) - setattr(cls, "Tight Gas Reservoir", - PermissibleValue(text="Tight Gas Reservoir")) - -class BioticRelationshipEnum(EnumDefinitionImpl): +class BuildOccupTypeEnum(EnumDefinitionImpl): - parasite = PermissibleValue(text="parasite") - commensal = PermissibleValue(text="commensal") - symbiont = PermissibleValue(text="symbiont") + office = PermissibleValue(text="office") + market = PermissibleValue(text="market") + restaurant = PermissibleValue(text="restaurant") + residence = PermissibleValue(text="residence") + school = PermissibleValue(text="school") + residential = PermissibleValue(text="residential") + commercial = PermissibleValue(text="commercial") + airport = PermissibleValue(text="airport") _defn = EnumDefinition( - name="BioticRelationshipEnum", + name="BuildOccupTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "free living", - PermissibleValue(text="free living")) + setattr(cls, "low rise", + PermissibleValue(text="low rise")) + setattr(cls, "high rise", + PermissibleValue(text="high rise")) + setattr(cls, "wood framed", + PermissibleValue(text="wood framed")) + setattr(cls, "health care", + PermissibleValue(text="health care")) + setattr(cls, "sports complex", + PermissibleValue(text="sports complex")) -class DoorMoveEnum(EnumDefinitionImpl): +class WeekdayEnum(EnumDefinitionImpl): - collapsible = PermissibleValue(text="collapsible") - folding = PermissibleValue(text="folding") - revolving = PermissibleValue(text="revolving") - sliding = PermissibleValue(text="sliding") - swinging = PermissibleValue(text="swinging") + Monday = PermissibleValue(text="Monday") + Tuesday = PermissibleValue(text="Tuesday") + Wednesday = PermissibleValue(text="Wednesday") + Thursday = PermissibleValue(text="Thursday") + Friday = PermissibleValue(text="Friday") + Saturday = PermissibleValue(text="Saturday") + Sunday = PermissibleValue(text="Sunday") _defn = EnumDefinition( - name="DoorMoveEnum", + name="WeekdayEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "rolling shutter", - PermissibleValue(text="rolling shutter")) - -class RoomCondtEnum(EnumDefinitionImpl): +class TrainStatLocEnum(EnumDefinitionImpl): - new = PermissibleValue(text="new") - damaged = PermissibleValue(text="damaged") - rupture = PermissibleValue(text="rupture") + riverside = PermissibleValue(text="riverside") _defn = EnumDefinition( - name="RoomCondtEnum", + name="TrainStatLocEnum", ) @classmethod def _addvals(cls): - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) - setattr(cls, "visible signs of mold/mildew", - PermissibleValue(text="visible signs of mold/mildew")) + setattr(cls, "south station above ground", + PermissibleValue(text="south station above ground")) + setattr(cls, "south station underground", + PermissibleValue(text="south station underground")) + setattr(cls, "south station amtrak", + PermissibleValue(text="south station amtrak")) + setattr(cls, "forest hills", + PermissibleValue(text="forest hills")) class SampleTypeEnum(EnumDefinitionImpl): @@ -9159,10 +9159,10 @@ class slots: model_uri=NMDC.has_raw_value, domain=AttributeValue, range=Optional[str]) slots.has_unit = Slot(uri=NMDC.has_unit, name="has_unit", curie=NMDC.curie('has_unit'), - model_uri=NMDC.has_unit, domain=None, range=Optional[str], mappings = [QUD.unit, SCHEMA.unitCode]) + model_uri=NMDC.has_unit, domain=None, range=Optional[str], mappings = [QUD["unit"], SCHEMA["unitCode"]]) slots.has_numeric_value = Slot(uri=NMDC.has_numeric_value, name="has_numeric_value", curie=NMDC.curie('has_numeric_value'), - model_uri=NMDC.has_numeric_value, domain=None, range=Optional[float], mappings = [QUD.quantityValue, SCHEMA.value]) + model_uri=NMDC.has_numeric_value, domain=None, range=Optional[float], mappings = [QUD["quantityValue"], SCHEMA["value"]]) slots.has_minimum_numeric_value = Slot(uri=NMDC.has_minimum_numeric_value, name="has_minimum_numeric_value", curie=NMDC.curie('has_minimum_numeric_value'), model_uri=NMDC.has_minimum_numeric_value, domain=None, range=Optional[float]) @@ -9174,10 +9174,10 @@ class slots: model_uri=NMDC.has_boolean_value, domain=None, range=Optional[Union[bool, Bool]]) slots.latitude = Slot(uri=WGS84.lat, name="latitude", curie=WGS84.curie('lat'), - model_uri=NMDC.latitude, domain=GeolocationValue, range=Optional[float], mappings = [SCHEMA.latitude]) + model_uri=NMDC.latitude, domain=GeolocationValue, range=Optional[float], mappings = [SCHEMA["latitude"]]) slots.longitude = Slot(uri=WGS84.long, name="longitude", curie=WGS84.curie('long'), - model_uri=NMDC.longitude, domain=GeolocationValue, range=Optional[float], mappings = [SCHEMA.longitude]) + model_uri=NMDC.longitude, domain=GeolocationValue, range=Optional[float], mappings = [SCHEMA["longitude"]]) slots.term = Slot(uri=NMDC.term, name="term", curie=NMDC.curie('term'), model_uri=NMDC.term, domain=ControlledTermValue, range=Optional[Union[dict, OntologyClass]]) @@ -9222,13 +9222,14 @@ class slots: model_uri=NMDC.md5_checksum, domain=None, range=Optional[str]) slots.keywords = Slot(uri=NMDC.keywords, name="keywords", curie=NMDC.curie('keywords'), - model_uri=NMDC.keywords, domain=None, range=Optional[Union[str, List[str]]], mappings = [DCTERMS.subject]) + model_uri=NMDC.keywords, domain=None, range=Optional[Union[str, List[str]]], mappings = [DCTERMS["subject"]]) slots.objective = Slot(uri=NMDC.objective, name="objective", curie=NMDC.curie('objective'), model_uri=NMDC.objective, domain=None, range=Optional[str], mappings = [SIO["000337"]]) slots.websites = Slot(uri=NMDC.websites, name="websites", curie=NMDC.curie('websites'), - model_uri=NMDC.websites, domain=None, range=Optional[Union[str, List[str]]]) + model_uri=NMDC.websites, domain=None, range=Optional[Union[str, List[str]]], + pattern=re.compile(r'^[Hh][Tt][Tt][Pp][Ss]?:\/\/(?!.*[Dd][Oo][Ii]\.[Oo][Rr][Gg]).*$')) slots.highest_similarity_score = Slot(uri=NMDC.highest_similarity_score, name="highest_similarity_score", curie=NMDC.curie('highest_similarity_score'), model_uri=NMDC.highest_similarity_score, domain=None, range=Optional[float]) @@ -10874,26 +10875,26 @@ class slots: slots.xylene = Slot(uri=MIXS['0000156'], name="xylene", curie=MIXS.curie('0000156'), model_uri=NMDC.xylene, domain=None, range=Optional[Union[dict, QuantityValue]]) -slots.nucleic_acid_sequence_source_field = Slot(uri=MIXS.nucleic_acid_sequence_source_field, name="nucleic acid sequence source field", curie=MIXS.curie('nucleic_acid_sequence_source_field'), - model_uri=NMDC.nucleic_acid_sequence_source_field, domain=None, range=Optional[str]) - slots.has_raw_value = Slot(uri=MIXS.has_raw_value, name="has raw value", curie=MIXS.curie('has_raw_value'), model_uri=NMDC.has_raw_value, domain=None, range=Optional[str]) -slots.environment_field = Slot(uri=MIXS.environment_field, name="environment field", curie=MIXS.curie('environment_field'), - model_uri=NMDC.environment_field, domain=None, range=Optional[str]) +slots.nucleic_acid_sequence_source_field = Slot(uri=MIXS.nucleic_acid_sequence_source_field, name="nucleic acid sequence source field", curie=MIXS.curie('nucleic_acid_sequence_source_field'), + model_uri=NMDC.nucleic_acid_sequence_source_field, domain=None, range=Optional[str]) -slots.core_field = Slot(uri=MIXS.core_field, name="core field", curie=MIXS.curie('core_field'), - model_uri=NMDC.core_field, domain=None, range=Optional[str]) +slots.sequencing_field = Slot(uri=MIXS.sequencing_field, name="sequencing field", curie=MIXS.curie('sequencing_field'), + model_uri=NMDC.sequencing_field, domain=None, range=Optional[str]) slots.has_numeric_value = Slot(uri=MIXS.has_numeric_value, name="has numeric value", curie=MIXS.curie('has_numeric_value'), model_uri=NMDC.has_numeric_value, domain=None, range=Optional[float]) +slots.core_field = Slot(uri=MIXS.core_field, name="core field", curie=MIXS.curie('core_field'), + model_uri=NMDC.core_field, domain=None, range=Optional[str]) + slots.has_unit = Slot(uri=MIXS.has_unit, name="has unit", curie=MIXS.curie('has_unit'), model_uri=NMDC.has_unit, domain=None, range=Optional[str]) -slots.sequencing_field = Slot(uri=MIXS.sequencing_field, name="sequencing field", curie=MIXS.curie('sequencing_field'), - model_uri=NMDC.sequencing_field, domain=None, range=Optional[str]) +slots.environment_field = Slot(uri=MIXS.environment_field, name="environment field", curie=MIXS.curie('environment_field'), + model_uri=NMDC.environment_field, domain=None, range=Optional[str]) slots.investigation_field = Slot(uri=MIXS.investigation_field, name="investigation field", curie=MIXS.curie('investigation_field'), model_uri=NMDC.investigation_field, domain=None, range=Optional[str]) @@ -11326,21 +11327,21 @@ class slots: model_uri=NMDC.has_part, domain=NamedThing, range=Optional[Union[Union[str, NamedThingId], List[Union[str, NamedThingId]]]]) slots.started_at_time = Slot(uri=NMDC.started_at_time, name="started_at_time", curie=NMDC.curie('started_at_time'), - model_uri=NMDC.started_at_time, domain=None, range=Optional[str], mappings = [PROV.startedAtTime], + model_uri=NMDC.started_at_time, domain=None, range=Optional[str], mappings = [PROV["startedAtTime"]], pattern=re.compile(r'^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$')) slots.ended_at_time = Slot(uri=NMDC.ended_at_time, name="ended_at_time", curie=NMDC.curie('ended_at_time'), - model_uri=NMDC.ended_at_time, domain=None, range=Optional[str], mappings = [PROV.endedAtTime], + model_uri=NMDC.ended_at_time, domain=None, range=Optional[str], mappings = [PROV["endedAtTime"]], pattern=re.compile(r'^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$')) slots.was_informed_by = Slot(uri=NMDC.was_informed_by, name="was_informed_by", curie=NMDC.curie('was_informed_by'), - model_uri=NMDC.was_informed_by, domain=None, range=Optional[Union[str, ActivityId]], mappings = [PROV.wasInformedBy]) + model_uri=NMDC.was_informed_by, domain=None, range=Optional[Union[str, ActivityId]], mappings = [PROV["wasInformedBy"]]) slots.was_generated_by = Slot(uri=NMDC.was_generated_by, name="was_generated_by", curie=NMDC.curie('was_generated_by'), - model_uri=NMDC.was_generated_by, domain=None, range=Optional[Union[str, ActivityId]], mappings = [PROV.wasGeneratedBy]) + model_uri=NMDC.was_generated_by, domain=None, range=Optional[Union[str, ActivityId]], mappings = [PROV["wasGeneratedBy"]]) slots.used = Slot(uri=NMDC.used, name="used", curie=NMDC.curie('used'), - model_uri=NMDC.used, domain=Activity, range=Optional[str], mappings = [PROV.used]) + model_uri=NMDC.used, domain=Activity, range=Optional[str], mappings = [PROV["used"]]) slots.Pooling_has_input = Slot(uri=NMDC.has_input, name="Pooling_has_input", curie=NMDC.curie('has_input'), model_uri=NMDC.Pooling_has_input, domain=Pooling, range=Optional[Union[Union[str, NamedThingId], List[Union[str, NamedThingId]]]]) @@ -11520,7 +11521,8 @@ class slots: model_uri=NMDC.Study_name, domain=Study, range=Optional[str]) slots.Study_websites = Slot(uri=NMDC.websites, name="Study_websites", curie=NMDC.curie('websites'), - model_uri=NMDC.Study_websites, domain=Study, range=Optional[Union[str, List[str]]]) + model_uri=NMDC.Study_websites, domain=Study, range=Optional[Union[str, List[str]]], + pattern=re.compile(r'^[Hh][Tt][Tt][Pp][Ss]?:\/\/(?!.*[Dd][Oo][Ii]\.[Oo][Rr][Gg]).*$')) slots.Study_description = Slot(uri=DCTERMS.description, name="Study_description", curie=DCTERMS.curie('description'), model_uri=NMDC.Study_description, domain=Study, range=Optional[str]) @@ -11618,7 +11620,7 @@ class slots: model_uri=NMDC.FunctionalAnnotation_type, domain=FunctionalAnnotation, range=Optional[Union[str, OntologyClassId]]) slots.FunctionalAnnotation_was_generated_by = Slot(uri=NMDC.was_generated_by, name="FunctionalAnnotation_was_generated_by", curie=NMDC.curie('was_generated_by'), - model_uri=NMDC.FunctionalAnnotation_was_generated_by, domain=FunctionalAnnotation, range=Optional[Union[str, MetagenomeAnnotationActivityId]], mappings = [PROV.wasGeneratedBy]) + model_uri=NMDC.FunctionalAnnotation_was_generated_by, domain=FunctionalAnnotation, range=Optional[Union[str, MetagenomeAnnotationActivityId]], mappings = [PROV["wasGeneratedBy"]]) slots.InstrumentMixin_name = Slot(uri=NMDC.name, name="InstrumentMixin_name", curie=NMDC.curie('name'), model_uri=NMDC.InstrumentMixin_name, domain=InstrumentMixin, range=Optional[Union[str, "DeviceEnum"]]) @@ -11653,10 +11655,10 @@ class slots: model_uri=NMDC.QuantityValue_has_raw_value, domain=QuantityValue, range=Optional[str]) slots.QuantityValue_has_unit = Slot(uri=NMDC.has_unit, name="QuantityValue_has_unit", curie=NMDC.curie('has_unit'), - model_uri=NMDC.QuantityValue_has_unit, domain=QuantityValue, range=Optional[str], mappings = [QUD.unit, SCHEMA.unitCode]) + model_uri=NMDC.QuantityValue_has_unit, domain=QuantityValue, range=Optional[str], mappings = [QUD["unit"], SCHEMA["unitCode"]]) slots.QuantityValue_has_numeric_value = Slot(uri=NMDC.has_numeric_value, name="QuantityValue_has_numeric_value", curie=NMDC.curie('has_numeric_value'), - model_uri=NMDC.QuantityValue_has_numeric_value, domain=QuantityValue, range=Optional[float], mappings = [QUD.quantityValue, SCHEMA.value]) + model_uri=NMDC.QuantityValue_has_numeric_value, domain=QuantityValue, range=Optional[float], mappings = [QUD["quantityValue"], SCHEMA["value"]]) slots.PersonValue_orcid = Slot(uri=NMDC.orcid, name="PersonValue_orcid", curie=NMDC.curie('orcid'), model_uri=NMDC.PersonValue_orcid, domain=PersonValue, range=Optional[str]) @@ -11683,10 +11685,10 @@ class slots: model_uri=NMDC.GeolocationValue_has_raw_value, domain=GeolocationValue, range=Optional[str]) slots.GeolocationValue_latitude = Slot(uri=WGS84.lat, name="GeolocationValue_latitude", curie=WGS84.curie('lat'), - model_uri=NMDC.GeolocationValue_latitude, domain=GeolocationValue, range=float, mappings = [SCHEMA.latitude]) + model_uri=NMDC.GeolocationValue_latitude, domain=GeolocationValue, range=float, mappings = [SCHEMA["latitude"]]) slots.GeolocationValue_longitude = Slot(uri=WGS84.long, name="GeolocationValue_longitude", curie=WGS84.curie('long'), - model_uri=NMDC.GeolocationValue_longitude, domain=GeolocationValue, range=float, mappings = [SCHEMA.longitude]) + model_uri=NMDC.GeolocationValue_longitude, domain=GeolocationValue, range=float, mappings = [SCHEMA["longitude"]]) slots.DissolvingActivity_material_input = Slot(uri=NMDC.material_input, name="DissolvingActivity_material_input", curie=NMDC.curie('material_input'), model_uri=NMDC.DissolvingActivity_material_input, domain=DissolvingActivity, range=Optional[Union[str, MaterialSampleId]]) @@ -11711,11 +11713,11 @@ class slots: model_uri=NMDC.ReactionActivity_reaction_time, domain=ReactionActivity, range=Optional[Union[dict, QuantityValue]]) slots.WorkflowExecutionActivity_started_at_time = Slot(uri=NMDC.started_at_time, name="WorkflowExecutionActivity_started_at_time", curie=NMDC.curie('started_at_time'), - model_uri=NMDC.WorkflowExecutionActivity_started_at_time, domain=WorkflowExecutionActivity, range=str, mappings = [PROV.startedAtTime], + model_uri=NMDC.WorkflowExecutionActivity_started_at_time, domain=WorkflowExecutionActivity, range=str, mappings = [PROV["startedAtTime"]], pattern=re.compile(r'^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$')) slots.WorkflowExecutionActivity_ended_at_time = Slot(uri=NMDC.ended_at_time, name="WorkflowExecutionActivity_ended_at_time", curie=NMDC.curie('ended_at_time'), - model_uri=NMDC.WorkflowExecutionActivity_ended_at_time, domain=WorkflowExecutionActivity, range=str, mappings = [PROV.endedAtTime], + model_uri=NMDC.WorkflowExecutionActivity_ended_at_time, domain=WorkflowExecutionActivity, range=str, mappings = [PROV["endedAtTime"]], pattern=re.compile(r'^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$')) slots.WorkflowExecutionActivity_git_url = Slot(uri=NMDC.git_url, name="WorkflowExecutionActivity_git_url", curie=NMDC.curie('git_url'), @@ -11778,14 +11780,14 @@ class slots: pattern=re.compile(r'^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$')) slots.MetaproteomicsAnalysisActivity_used = Slot(uri=NMDC.used, name="MetaproteomicsAnalysisActivity_used", curie=NMDC.curie('used'), - model_uri=NMDC.MetaproteomicsAnalysisActivity_used, domain=MetaproteomicsAnalysisActivity, range=Optional[str], mappings = [PROV.used]) + model_uri=NMDC.MetaproteomicsAnalysisActivity_used, domain=MetaproteomicsAnalysisActivity, range=Optional[str], mappings = [PROV["used"]]) slots.MetaproteomicsAnalysisActivity_id = Slot(uri=NMDC.id, name="MetaproteomicsAnalysisActivity_id", curie=NMDC.curie('id'), model_uri=NMDC.MetaproteomicsAnalysisActivity_id, domain=MetaproteomicsAnalysisActivity, range=Union[str, MetaproteomicsAnalysisActivityId], pattern=re.compile(r'^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$')) slots.NomAnalysisActivity_used = Slot(uri=NMDC.used, name="NomAnalysisActivity_used", curie=NMDC.curie('used'), - model_uri=NMDC.NomAnalysisActivity_used, domain=NomAnalysisActivity, range=Optional[str], mappings = [PROV.used]) + model_uri=NMDC.NomAnalysisActivity_used, domain=NomAnalysisActivity, range=Optional[str], mappings = [PROV["used"]]) slots.NomAnalysisActivity_id = Slot(uri=NMDC.id, name="NomAnalysisActivity_id", curie=NMDC.curie('id'), model_uri=NMDC.NomAnalysisActivity_id, domain=NomAnalysisActivity, range=Union[str, NomAnalysisActivityId], diff --git a/nmdc_schema/nmdc.schema.json b/nmdc_schema/nmdc.schema.json index bc608d7f48..b49cd08bb9 100644 --- a/nmdc_schema/nmdc.schema.json +++ b/nmdc_schema/nmdc.schema.json @@ -3429,11 +3429,7 @@ }, "collecting_biosamples_from_site_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/CollectingBiosamplesFromSite" - } - ] + "$ref": "#/$defs/CollectingBiosamplesFromSite" }, "type": "array" }, @@ -3453,11 +3449,7 @@ "extraction_set": { "description": "This property links a database object to the set of extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/Extraction" - } - ] + "$ref": "#/$defs/Extraction" }, "type": "array" }, @@ -3490,11 +3482,7 @@ "library_preparation_set": { "description": "This property links a database object to the set of DNA extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/LibraryPreparation" - } - ] + "$ref": "#/$defs/LibraryPreparation" }, "type": "array" }, @@ -3569,11 +3557,7 @@ "omics_processing_set": { "description": "This property links a database object to the set of omics processings within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/OmicsProcessing" - } - ] + "$ref": "#/$defs/OmicsProcessing" }, "type": "array" }, @@ -3614,11 +3598,7 @@ }, "pooling_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/Pooling" - } - ] + "$ref": "#/$defs/Pooling" }, "type": "array" }, @@ -6663,6 +6643,7 @@ "websites": { "description": "A list of websites that are associated with the entity.", "items": { + "pattern": "^[Hh][Tt][Tt][Pp][Ss]?:\\/\\/(?!.*[Dd][Oo][Ii]\\.[Oo][Rr][Gg]).*$", "type": "string" }, "type": "array" @@ -7833,6 +7814,7 @@ "websites": { "description": "A list of websites that are associated with the entity.", "items": { + "pattern": "^[Hh][Tt][Tt][Pp][Ss]?:\\/\\/(?!.*[Dd][Oo][Ii]\\.[Oo][Rr][Gg]).*$", "type": "string" }, "type": "array" @@ -8400,11 +8382,7 @@ }, "collecting_biosamples_from_site_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/CollectingBiosamplesFromSite" - } - ] + "$ref": "#/$defs/CollectingBiosamplesFromSite" }, "type": "array" }, @@ -8424,11 +8402,7 @@ "extraction_set": { "description": "This property links a database object to the set of extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/Extraction" - } - ] + "$ref": "#/$defs/Extraction" }, "type": "array" }, @@ -8461,11 +8435,7 @@ "library_preparation_set": { "description": "This property links a database object to the set of DNA extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/LibraryPreparation" - } - ] + "$ref": "#/$defs/LibraryPreparation" }, "type": "array" }, @@ -8540,11 +8510,7 @@ "omics_processing_set": { "description": "This property links a database object to the set of omics processings within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/OmicsProcessing" - } - ] + "$ref": "#/$defs/OmicsProcessing" }, "type": "array" }, @@ -8585,11 +8551,7 @@ }, "pooling_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/Pooling" - } - ] + "$ref": "#/$defs/Pooling" }, "type": "array" }, @@ -8630,5 +8592,5 @@ }, "title": "NMDC", "type": "object", - "version": "v9.1.0" + "version": "v9.2.0" } \ No newline at end of file diff --git a/nmdc_schema/nmdc_materialized_patterns.schema.json b/nmdc_schema/nmdc_materialized_patterns.schema.json index 807a1ae608..7b6bd5fe1e 100644 --- a/nmdc_schema/nmdc_materialized_patterns.schema.json +++ b/nmdc_schema/nmdc_materialized_patterns.schema.json @@ -3429,11 +3429,7 @@ }, "collecting_biosamples_from_site_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/CollectingBiosamplesFromSite" - } - ] + "$ref": "#/$defs/CollectingBiosamplesFromSite" }, "type": "array" }, @@ -3453,11 +3449,7 @@ "extraction_set": { "description": "This property links a database object to the set of extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/Extraction" - } - ] + "$ref": "#/$defs/Extraction" }, "type": "array" }, @@ -3490,11 +3482,7 @@ "library_preparation_set": { "description": "This property links a database object to the set of DNA extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/LibraryPreparation" - } - ] + "$ref": "#/$defs/LibraryPreparation" }, "type": "array" }, @@ -3569,11 +3557,7 @@ "omics_processing_set": { "description": "This property links a database object to the set of omics processings within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/OmicsProcessing" - } - ] + "$ref": "#/$defs/OmicsProcessing" }, "type": "array" }, @@ -3614,11 +3598,7 @@ }, "pooling_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/Pooling" - } - ] + "$ref": "#/$defs/Pooling" }, "type": "array" }, @@ -6663,6 +6643,7 @@ "websites": { "description": "A list of websites that are associated with the entity.", "items": { + "pattern": "^[Hh][Tt][Tt][Pp][Ss]?:\\/\\/(?!.*[Dd][Oo][Ii]\\.[Oo][Rr][Gg]).*$", "type": "string" }, "type": "array" @@ -7833,6 +7814,7 @@ "websites": { "description": "A list of websites that are associated with the entity.", "items": { + "pattern": "^[Hh][Tt][Tt][Pp][Ss]?:\\/\\/(?!.*[Dd][Oo][Ii]\\.[Oo][Rr][Gg]).*$", "type": "string" }, "type": "array" @@ -8400,11 +8382,7 @@ }, "collecting_biosamples_from_site_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/CollectingBiosamplesFromSite" - } - ] + "$ref": "#/$defs/CollectingBiosamplesFromSite" }, "type": "array" }, @@ -8424,11 +8402,7 @@ "extraction_set": { "description": "This property links a database object to the set of extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/Extraction" - } - ] + "$ref": "#/$defs/Extraction" }, "type": "array" }, @@ -8461,11 +8435,7 @@ "library_preparation_set": { "description": "This property links a database object to the set of DNA extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/LibraryPreparation" - } - ] + "$ref": "#/$defs/LibraryPreparation" }, "type": "array" }, @@ -8540,11 +8510,7 @@ "omics_processing_set": { "description": "This property links a database object to the set of omics processings within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/OmicsProcessing" - } - ] + "$ref": "#/$defs/OmicsProcessing" }, "type": "array" }, @@ -8585,11 +8551,7 @@ }, "pooling_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/Pooling" - } - ] + "$ref": "#/$defs/Pooling" }, "type": "array" }, @@ -8630,5 +8592,5 @@ }, "title": "NMDC", "type": "object", - "version": "v9.1.0" + "version": "v9.2.0" } diff --git a/nmdc_schema/nmdc_materialized_patterns.yaml b/nmdc_schema/nmdc_materialized_patterns.yaml index d163cab8cd..71ecd9e611 100644 --- a/nmdc_schema/nmdc_materialized_patterns.yaml +++ b/nmdc_schema/nmdc_materialized_patterns.yaml @@ -11,7 +11,7 @@ notes: - not importing any MIxS terms where the relationship between the name (SCN) and the id isn't 1:1 id: https://w3id.org/nmdc/nmdc -version: v9.1.0 +version: v9.2.0 license: https://creativecommons.org/publicdomain/zero/1.0/ prefixes: FMA: @@ -1439,50 +1439,164 @@ enums: text: soil water_extract_soil: text: water_extract_soil - substructure_type_enum: - name: substructure_type_enum + sr_kerog_type_enum: + name: sr_kerog_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement - window_cover_enum: - name: window_cover_enum + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + mech_struc_enum: + name: mech_struc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - room_loc_enum: - name: room_loc_enum + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + filter_type_enum: + name: filter_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - door_type_metal_enum: - name: door_type_metal_enum + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + oxy_stat_samp_enum: + name: oxy_stat_samp_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate + aerobic: + text: aerobic + anaerobic: + text: anaerobic + other: + text: other + window_type_enum: + name: window_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + arch_struc_enum: + name: arch_struc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + quad_pos_enum: + name: quad_pos_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + hcr_geol_age_enum: + name: hcr_geol_age_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other occup_document_enum: name: occup_document_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1495,58 +1609,178 @@ enums: text: manual count videos: text: videos - biol_stat_enum: - name: biol_stat_enum + plant_growth_med_enum: + name: plant_growth_med_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - build_docs_enum: - name: build_docs_enum + other artificial liquid medium: + text: other artificial liquid medium + other artificial solid medium: + text: other artificial solid medium + peat moss: + text: peat moss + perlite: + text: perlite + pumice: + text: pumice + sand: + text: sand + soil: + text: soil + vermiculite: + text: vermiculite + water: + text: water + ceil_cond_enum: + name: ceil_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - drawings_enum: - name: drawings_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + gender_restroom_enum: + name: gender_restroom_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + all gender: + text: all gender + female: + text: female + gender neurtral: + text: gender neurtral + male: + text: male + male and female: + text: male and female + unisex: + text: unisex + vis_media_enum: + name: vis_media_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + photos: + text: photos + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans + door_type_wood_enum: + name: door_type_wood_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + fao_class_enum: + name: fao_class_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Acrisols: + text: Acrisols + Andosols: + text: Andosols + Arenosols: + text: Arenosols + Cambisols: + text: Cambisols + Chernozems: + text: Chernozems + Ferralsols: + text: Ferralsols + Fluvisols: + text: Fluvisols + Gleysols: + text: Gleysols + Greyzems: + text: Greyzems + Gypsisols: + text: Gypsisols + Histosols: + text: Histosols + Kastanozems: + text: Kastanozems + Lithosols: + text: Lithosols + Luvisols: + text: Luvisols + Nitosols: + text: Nitosols + Phaeozems: + text: Phaeozems + Planosols: + text: Planosols + Podzols: + text: Podzols + Podzoluvisols: + text: Podzoluvisols + Rankers: + text: Rankers + Regosols: + text: Regosols + Rendzinas: + text: Rendzinas + Solonchaks: + text: Solonchaks + Solonetz: + text: Solonetz + Vertisols: + text: Vertisols + Yermosols: + text: Yermosols + soil_horizon_enum: + name: soil_horizon_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost + M horizon: + text: M horizon + specific_enum: + name: specific_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: operation: @@ -1559,118 +1793,50 @@ enums: text: bid design: text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - ceil_texture_enum: - name: ceil_texture_enum + photos: + text: photos + tidal_stage_enum: + name: tidal_stage_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - sr_dep_env_enum: - name: sr_dep_env_enum + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + int_wall_cond_enum: + name: int_wall_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - light_type_enum: - name: light_type_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - rel_samp_loc_enum: - name: rel_samp_loc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - drainage_class_enum: - name: drainage_class_enum + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + drainage_class_enum: + name: drainage_class_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: very poorly: @@ -1685,6 +1851,22 @@ enums: text: well excessively drained: text: excessively drained + wall_const_type_enum: + name: wall_const_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive samp_weather_enum: name: samp_weather_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1707,180 +1889,122 @@ enums: text: sunny windy: text: windy - wall_const_type_enum: - name: wall_const_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - arch_struc_enum: - name: arch_struc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - window_vert_pos_enum: - name: window_vert_pos_enum + train_line_enum: + name: train_line_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - window_mat_enum: - name: window_mat_enum + red: + text: red + green: + text: green + orange: + text: orange + ceil_type_enum: + name: ceil_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - clad: - text: clad - fiberglass: - text: fiberglass - metal: - text: metal - vinyl: - text: vinyl - wood: - text: wood - train_stop_loc_enum: - name: train_stop_loc_enum + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + samp_dis_stage_enum: + name: samp_dis_stage_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - samp_capt_status_enum: - name: samp_capt_status_enum + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other + samp_md_enum: + name: samp_md_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL other: text: other - floor_finish_mat_enum: - name: floor_finish_mat_enum + door_comp_type_enum: + name: door_comp_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - tile: - text: tile - wood strip or parquet: - text: wood strip or parquet - carpet: - text: carpet - rug: - text: rug - laminate wood: - text: laminate wood - lineoleum: - text: lineoleum - vinyl composition tile: - text: vinyl composition tile - sheet vinyl: - text: sheet vinyl - stone: - text: stone - bamboo: - text: bamboo - cork: - text: cork - terrazo: - text: terrazo - concrete: - text: concrete - none: - text: none - sealed: - text: sealed - clear finish: - text: clear finish - paint: - text: paint - none or unfinished: - text: none or unfinished - plant_growth_med_enum: - name: plant_growth_med_enum + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic + window_loc_enum: + name: window_loc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - other artificial liquid medium: - text: other artificial liquid medium - other artificial solid medium: - text: other artificial solid medium - peat moss: - text: peat moss - perlite: - text: perlite - pumice: - text: pumice - sand: - text: sand - soil: - text: soil - vermiculite: - text: vermiculite - water: - text: water - oxy_stat_samp_enum: - name: oxy_stat_samp_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + door_loc_enum: + name: door_loc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - aerobic: - text: aerobic - anaerobic: - text: anaerobic - other: - text: other - window_cond_enum: - name: window_cond_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + water_feat_type_enum: + name: water_feat_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - wall_texture_enum: - name: wall_texture_enum + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall + ceil_texture_enum: + name: ceil_texture_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: crows feet: text: crows feet crows-foot stomp: text: crows-foot stomp - ? '' - : text: '' double skip: text: double skip hawk and trowel: @@ -1903,32 +2027,46 @@ enums: text: stomp knockdown swirl: text: swirl - profile_position_enum: - name: profile_position_enum + growth_habit_enum: + name: growth_habit_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - wall_loc_enum: - name: wall_loc_enum + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + shading_device_type_enum: + name: shading_device_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning room_type_enum: name: room_type_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1983,6 +2121,92 @@ enums: text: cafe warehouse: text: warehouse + light_type_enum: + name: light_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + build_docs_enum: + name: build_docs_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown door_cond_enum: name: door_cond_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1997,70 +2221,218 @@ enums: text: rupture visible wear: text: visible wear - organism_count_enum: - name: organism_count_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - ATP: - text: ATP - MPN: - text: MPN - other: - text: other - host_sex_enum: - name: host_sex_enum + room_condt_enum: + name: room_condt_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - indoor_surf_enum: - name: indoor_surf_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + door_type_metal_enum: + name: door_type_metal_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - soil_horizon_enum: - name: soil_horizon_enum + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate + tillage_enum: + name: tillage_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - M horizon: - text: M horizon - ext_window_orient_enum: - name: ext_window_orient_enum + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + sr_lithology_enum: + name: sr_lithology_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + door_move_enum: + name: door_move_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + window_cover_enum: + name: window_cover_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + lithology_enum: + name: lithology_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic + other: + text: other + samp_floor_enum: + name: samp_floor_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + door_direct_enum: + name: door_direct_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + heat_deliv_loc_enum: + name: heat_deliv_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine + other: + text: other + sr_geol_age_enum: + name: sr_geol_age_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + ext_wall_orient_enum: + name: ext_wall_orient_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: north: @@ -2079,271 +2451,68 @@ enums: text: southwest northwest: text: northwest - cur_land_use_enum: - name: cur_land_use_enum + floor_water_mold_enum: + name: floor_water_mold_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - badlands: - text: badlands - cities: - text: cities - conifers: - text: conifers - annotations: - originally: - tag: originally - value: conifers (e.g. pine,spruce,fir,cypress) - examples: - - value: cypress - - value: fir - - value: pine - - value: spruce - crop trees: - text: crop trees - annotations: - originally: - tag: originally - value: crop trees (nuts,fruit,christmas trees,nursery trees) - examples: - - value: christmas trees - - value: fruit - - value: nursery trees - - value: nuts - farmstead: - text: farmstead - gravel: - text: gravel - hardwoods: - text: hardwoods - annotations: - originally: - tag: originally - value: hardwoods (e.g. oak,hickory,elm,aspen) - examples: - - value: aspen - - value: elm - - value: hickory - - value: oak - hayland: - text: hayland - horticultural plants: - text: horticultural plants - annotations: - originally: - tag: originally - value: horticultural plants (e.g. tulips) - examples: - - value: tulips - industrial areas: - text: industrial areas - intermixed hardwood and conifers: - text: intermixed hardwood and conifers - marshlands: - text: marshlands - annotations: - originally: - tag: originally - value: marshlands (grass,sedges,rushes) - examples: - - value: grass - - value: rushes - - value: sedgees - meadows: - text: meadows - annotations: - originally: - tag: originally - value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) - examples: - - value: alfalfa - - value: bromegrass - - value: fescue - - value: grasses - - value: timothy - mines/quarries: - text: mines/quarries - mudflats: - text: mudflats - oil waste areas: - text: oil waste areas - pastureland: - text: pastureland - annotations: - originally: - tag: originally - value: pastureland (grasslands used for livestock grazing) - comments: - - grasslands used for livestock grazing - permanent snow or ice: - text: permanent snow or ice - rainforest: - text: rainforest - annotations: - originally: - tag: originally - value: rainforest (evergreen forest receiving greater than 406 cm annual - rainfall) - comments: - - evergreen forest receiving greater than 406 cm annual rainfall - rangeland: - text: rangeland - roads/railroads: - text: roads/railroads - rock: - text: rock - row crops: - text: row crops - saline seeps: - text: saline seeps - salt flats: - text: salt flats - sand: - text: sand - shrub crops: - text: shrub crops - annotations: - originally: - tag: originally - value: shrub crops (blueberries,nursery ornamentals,filberts) - examples: - - value: blueberries - - value: filberts - - value: nursery ornamentals - shrub land: - text: shrub land - annotations: - originally: - tag: originally - value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) - examples: - - value: creosote bush - - value: eucalyptus - - value: mesquite - - value: sage-brush - - value: shrub oak - small grains: - text: small grains - successional shrub land: - text: successional shrub land - annotations: - originally: - tag: originally - value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub - dogwoods,blackberries) - examples: - - value: blackberries - - value: chokecherry - - value: hazels - - value: shrub dogwoods - - value: sumacs - - value: tree saplings - swamp: - text: swamp - annotations: - originally: - tag: originally - value: swamp (permanent or semi-permanent water body dominated by woody - plants) - comments: - - permanent or semi-permanent water body dominated by woody plants - tropical: - text: tropical - annotations: - originally: - tag: originally - value: tropical (e.g. mangrove,palms) - examples: - - value: mangrove - - value: palms - tundra: - text: tundra - annotations: - originally: - tag: originally - value: tundra (mosses,lichens) - examples: - - value: lichens - - value: mosses - vegetable crops: - text: vegetable crops - vine crops: - text: vine crops - annotations: - originally: - tag: originally - value: vine crops (grapes) - examples: - - value: grapes - fao_class_enum: - name: fao_class_enum + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + window_cond_enum: + name: window_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Acrisols: - text: Acrisols - Andosols: - text: Andosols - Arenosols: - text: Arenosols - Cambisols: - text: Cambisols - Chernozems: - text: Chernozems - Ferralsols: - text: Ferralsols - Fluvisols: - text: Fluvisols - Gleysols: - text: Gleysols - Greyzems: - text: Greyzems - Gypsisols: - text: Gypsisols - Histosols: - text: Histosols - Kastanozems: - text: Kastanozems - Lithosols: - text: Lithosols - Luvisols: - text: Luvisols - Nitosols: - text: Nitosols - Phaeozems: - text: Phaeozems - Planosols: - text: Planosols - Podzols: - text: Podzols - Podzoluvisols: - text: Podzoluvisols - Rankers: - text: Rankers - Regosols: - text: Regosols - Rendzinas: - text: Rendzinas - Solonchaks: - text: Solonchaks - Solonetz: - text: Solonetz - Vertisols: - text: Vertisols - Yermosols: - text: Yermosols - sr_lithology_enum: - name: sr_lithology_enum + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + shading_device_cond_enum: + name: shading_device_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous - other: - text: other + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + wall_loc_enum: + name: wall_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west door_mat_enum: name: door_mat_enum from_schema: https://w3id.org/nmdc/nmdc @@ -2368,520 +2537,452 @@ enums: text: wood wood/plastic composite: text: wood/plastic composite - ceil_finish_mat_enum: - name: ceil_finish_mat_enum + plant_sex_enum: + name: plant_sex_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - furniture_enum: - name: furniture_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - growth_habit_enum: - name: growth_habit_enum + Androdioecious: + text: Androdioecious + Androecious: + text: Androecious + Androgynous: + text: Androgynous + Androgynomonoecious: + text: Androgynomonoecious + Andromonoecious: + text: Andromonoecious + Bisexual: + text: Bisexual + Dichogamous: + text: Dichogamous + Diclinous: + text: Diclinous + Dioecious: + text: Dioecious + Gynodioecious: + text: Gynodioecious + Gynoecious: + text: Gynoecious + Gynomonoecious: + text: Gynomonoecious + Hermaphroditic: + text: Hermaphroditic + Imperfect: + text: Imperfect + Monoclinous: + text: Monoclinous + Monoecious: + text: Monoecious + Perfect: + text: Perfect + Polygamodioecious: + text: Polygamodioecious + Polygamomonoecious: + text: Polygamomonoecious + Polygamous: + text: Polygamous + Protandrous: + text: Protandrous + Protogynous: + text: Protogynous + Subandroecious: + text: Subandroecious + Subdioecious: + text: Subdioecious + Subgynoecious: + text: Subgynoecious + Synoecious: + text: Synoecious + Trimonoecious: + text: Trimonoecious + Trioecious: + text: Trioecious + Unisexual: + text: Unisexual + wall_texture_enum: + name: wall_texture_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate - door_type_enum: - name: door_type_enum + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + surf_material_enum: + name: surf_material_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - composite: - text: composite + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass metal: text: metal - wooden: - text: wooden - gender_restroom_enum: - name: gender_restroom_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - all gender: - text: all gender - female: - text: female - gender neurtral: - text: gender neurtral - male: - text: male - male and female: - text: male and female - unisex: - text: unisex - door_comp_type_enum: - name: door_comp_type_enum + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + biotic_relationship_enum: + name: biotic_relationship_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic - freq_clean_enum: - name: freq_clean_enum + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + samp_subtype_enum: + name: samp_subtype_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other - samp_collect_point_enum: - name: samp_collect_point_enum + hcr_enum: + name: hcr_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir other: text: other - building_setting_enum: - name: building_setting_enum + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - handidness_enum: - name: handidness_enum + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + season_use_enum: + name: season_use_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - window_horiz_pos_enum: - name: window_horiz_pos_enum + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + floor_struc_enum: + name: floor_struc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - left: - text: left - middle: - text: middle - right: - text: right - door_loc_enum: - name: door_loc_enum + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + depos_env_enum: + name: depos_env_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - ext_wall_orient_enum: - name: ext_wall_orient_enum + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic + other: + text: other + room_loc_enum: + name: room_loc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - weekday_enum: - name: weekday_enum + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + profile_position_enum: + name: profile_position_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - lithology_enum: - name: lithology_enum + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + indoor_space_enum: + name: indoor_space_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample other: text: other - ceil_type_enum: - name: ceil_type_enum + furniture_enum: + name: furniture_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - floor_water_mold_enum: - name: floor_water_mold_enum + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + hc_produced_enum: + name: hc_produced_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - plant_sex_enum: - name: plant_sex_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - Androdioecious: - text: Androdioecious - Androecious: - text: Androecious - Androgynous: - text: Androgynous - Androgynomonoecious: - text: Androgynomonoecious - Andromonoecious: - text: Andromonoecious - Bisexual: - text: Bisexual - Dichogamous: - text: Dichogamous - Diclinous: - text: Diclinous - Dioecious: - text: Dioecious - Gynodioecious: - text: Gynodioecious - Gynoecious: - text: Gynoecious - Gynomonoecious: - text: Gynomonoecious - Hermaphroditic: - text: Hermaphroditic - Imperfect: - text: Imperfect - Monoclinous: - text: Monoclinous - Monoecious: - text: Monoecious - Perfect: - text: Perfect - Polygamodioecious: - text: Polygamodioecious - Polygamomonoecious: - text: Polygamomonoecious - Polygamous: - text: Polygamous - Protandrous: - text: Protandrous - Protogynous: - text: Protogynous - Subandroecious: - text: Subandroecious - Subdioecious: - text: Subdioecious - Subgynoecious: - text: Subgynoecious - Synoecious: - text: Synoecious - Trimonoecious: - text: Trimonoecious - Trioecious: - text: Trioecious - Unisexual: - text: Unisexual - int_wall_cond_enum: - name: int_wall_cond_enum + Oil: + text: Oil + Gas-Condensate: + text: Gas-Condensate + Gas: + text: Gas + Bitumen: + text: Bitumen + Coalbed Methane: + text: Coalbed Methane + other: + text: other + biol_stat_enum: + name: biol_stat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - surf_material_enum: - name: surf_material_enum + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_mat_enum: + name: window_mat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass + clad: + text: clad + fiberglass: + text: fiberglass metal: text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile vinyl: text: vinyl wood: text: wood - indoor_space_enum: - name: indoor_space_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator - season_use_enum: - name: season_use_enum + room_samp_pos_enum: + name: room_samp_pos_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - tidal_stage_enum: - name: tidal_stage_enum + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + surf_air_cont_enum: + name: surf_air_cont_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - specific_enum: - name: specific_enum + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + door_type_enum: + name: door_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - photos: - text: photos - vis_media_enum: - name: vis_media_enum + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + organism_count_enum: + name: organism_count_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry - shading_device_type_enum: - name: shading_device_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning + ATP: + text: ATP + MPN: + text: MPN + other: + text: other sediment_type_enum: name: sediment_type_enum from_schema: https://w3id.org/nmdc/nmdc @@ -2894,44 +2995,36 @@ enums: text: hydrogenous lithogenous: text: lithogenous - window_loc_enum: - name: window_loc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - heat_deliv_loc_enum: - name: heat_deliv_loc_enum + substructure_type_enum: + name: substructure_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - train_stat_loc_enum: - name: train_stat_loc_enum + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + indoor_surf_enum: + name: indoor_surf_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall wall_surf_treatment_enum: name: wall_surf_treatment_enum from_schema: https://w3id.org/nmdc/nmdc @@ -2948,48 +3041,68 @@ enums: text: stucco fabric: text: fabric - quad_pos_enum: - name: quad_pos_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - sr_kerog_type_enum: - name: sr_kerog_type_enum + drawings_enum: + name: drawings_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - water_feat_type_enum: - name: water_feat_type_enum + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + floor_finish_mat_enum: + name: floor_finish_mat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - ceil_cond_enum: - name: ceil_cond_enum + tile: + text: tile + wood strip or parquet: + text: wood strip or parquet + carpet: + text: carpet + rug: + text: rug + laminate wood: + text: laminate wood + lineoleum: + text: lineoleum + vinyl composition tile: + text: vinyl composition tile + sheet vinyl: + text: sheet vinyl + stone: + text: stone + bamboo: + text: bamboo + cork: + text: cork + terrazo: + text: terrazo + concrete: + text: concrete + none: + text: none + sealed: + text: sealed + clear finish: + text: clear finish + paint: + text: paint + none or unfinished: + text: none or unfinished + floor_cond_enum: + name: floor_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: new: @@ -3002,350 +3115,221 @@ enums: text: damaged rupture: text: rupture - samp_md_enum: - name: samp_md_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - train_line_enum: - name: train_line_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - samp_dis_stage_enum: - name: samp_dis_stage_enum + cur_land_use_enum: + name: cur_land_use_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other - depos_env_enum: - name: depos_env_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - mech_struc_enum: - name: mech_struc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus - samp_floor_enum: - name: samp_floor_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby - sr_geol_age_enum: - name: sr_geol_age_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - window_type_enum: - name: window_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window - build_occup_type_enum: - name: build_occup_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - surf_air_cont_enum: - name: surf_air_cont_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - door_direct_enum: - name: door_direct_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - filter_type_enum: - name: filter_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - floor_struc_enum: - name: floor_struc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed - concrete: - text: concrete - heat_cool_type_enum: - name: heat_cool_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - tillage_enum: - name: tillage_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - hcr_geol_age_enum: - name: hcr_geol_age_enum + badlands: + text: badlands + cities: + text: cities + conifers: + text: conifers + annotations: + originally: + tag: originally + value: conifers (e.g. pine,spruce,fir,cypress) + examples: + - value: cypress + - value: fir + - value: pine + - value: spruce + crop trees: + text: crop trees + annotations: + originally: + tag: originally + value: crop trees (nuts,fruit,christmas trees,nursery trees) + examples: + - value: christmas trees + - value: fruit + - value: nursery trees + - value: nuts + farmstead: + text: farmstead + gravel: + text: gravel + hardwoods: + text: hardwoods + annotations: + originally: + tag: originally + value: hardwoods (e.g. oak,hickory,elm,aspen) + examples: + - value: aspen + - value: elm + - value: hickory + - value: oak + hayland: + text: hayland + horticultural plants: + text: horticultural plants + annotations: + originally: + tag: originally + value: horticultural plants (e.g. tulips) + examples: + - value: tulips + industrial areas: + text: industrial areas + intermixed hardwood and conifers: + text: intermixed hardwood and conifers + marshlands: + text: marshlands + annotations: + originally: + tag: originally + value: marshlands (grass,sedges,rushes) + examples: + - value: grass + - value: rushes + - value: sedgees + meadows: + text: meadows + annotations: + originally: + tag: originally + value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) + examples: + - value: alfalfa + - value: bromegrass + - value: fescue + - value: grasses + - value: timothy + mines/quarries: + text: mines/quarries + mudflats: + text: mudflats + oil waste areas: + text: oil waste areas + pastureland: + text: pastureland + annotations: + originally: + tag: originally + value: pastureland (grasslands used for livestock grazing) + comments: + - grasslands used for livestock grazing + permanent snow or ice: + text: permanent snow or ice + rainforest: + text: rainforest + annotations: + originally: + tag: originally + value: rainforest (evergreen forest receiving greater than 406 cm annual + rainfall) + comments: + - evergreen forest receiving greater than 406 cm annual rainfall + rangeland: + text: rangeland + roads/railroads: + text: roads/railroads + rock: + text: rock + row crops: + text: row crops + saline seeps: + text: saline seeps + salt flats: + text: salt flats + sand: + text: sand + shrub crops: + text: shrub crops + annotations: + originally: + tag: originally + value: shrub crops (blueberries,nursery ornamentals,filberts) + examples: + - value: blueberries + - value: filberts + - value: nursery ornamentals + shrub land: + text: shrub land + annotations: + originally: + tag: originally + value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) + examples: + - value: creosote bush + - value: eucalyptus + - value: mesquite + - value: sage-brush + - value: shrub oak + small grains: + text: small grains + successional shrub land: + text: successional shrub land + annotations: + originally: + tag: originally + value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub + dogwoods,blackberries) + examples: + - value: blackberries + - value: chokecherry + - value: hazels + - value: shrub dogwoods + - value: sumacs + - value: tree saplings + swamp: + text: swamp + annotations: + originally: + tag: originally + value: swamp (permanent or semi-permanent water body dominated by woody + plants) + comments: + - permanent or semi-permanent water body dominated by woody plants + tropical: + text: tropical + annotations: + originally: + tag: originally + value: tropical (e.g. mangrove,palms) + examples: + - value: mangrove + - value: palms + tundra: + text: tundra + annotations: + originally: + tag: originally + value: tundra (mosses,lichens) + examples: + - value: lichens + - value: mosses + vegetable crops: + text: vegetable crops + vine crops: + text: vine crops + annotations: + originally: + tag: originally + value: vine crops (grapes) + examples: + - value: grapes + window_horiz_pos_enum: + name: window_horiz_pos_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - samp_subtype_enum: - name: samp_subtype_enum + left: + text: left + middle: + text: middle + right: + text: right + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other + permissible_values: + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat room_connected_enum: name: room_connected_enum from_schema: https://w3id.org/nmdc/nmdc @@ -3372,124 +3356,140 @@ enums: text: office stairwell: text: stairwell - floor_cond_enum: - name: floor_cond_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - hc_produced_enum: - name: hc_produced_enum + freq_clean_enum: + name: freq_clean_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Oil: - text: Oil - Gas-Condensate: - text: Gas-Condensate - Gas: - text: Gas - Bitumen: - text: Bitumen - Coalbed Methane: - text: Coalbed Methane + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually other: text: other - door_type_wood_enum: - name: door_type_wood_enum + building_setting_enum: + name: building_setting_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - hcr_enum: - name: hcr_enum + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + ext_window_orient_enum: + name: ext_window_orient_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - biotic_relationship_enum: - name: biotic_relationship_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + handidness_enum: + name: handidness_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - door_move_enum: - name: door_move_enum + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + host_sex_enum: + name: host_sex_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - room_condt_enum: - name: room_condt_enum + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + build_occup_type_enum: + name: build_occup_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + weekday_enum: + name: weekday_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + train_stat_loc_enum: + name: train_stat_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside slots: model: name: model @@ -5045,9 +5045,12 @@ slots: websites: name: websites description: A list of websites that are associated with the entity. + comments: + - DOIs should not be included as websites. Instead, use the associated_dois slot. from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string + pattern: ^[Hh][Tt][Tt][Pp][Ss]?:\/\/(?!.*[Dd][Oo][Ii]\.[Oo][Rr][Gg]).*$ highest_similarity_score: name: highest_similarity_score todos: @@ -17703,23 +17706,17 @@ slots: slot_uri: MIXS:0000156 multivalued: false range: QuantityValue - nucleic acid sequence source field: - name: nucleic acid sequence source field - from_schema: https://w3id.org/nmdc/nmdc - abstract: true has raw value: name: has raw value from_schema: https://w3id.org/nmdc/nmdc string_serialization: '{has numeric value} {has unit}' owner: QuantityValue - environment field: - name: environment field - description: field describing environmental aspect of a sample + nucleic acid sequence source field: + name: nucleic acid sequence source field from_schema: https://w3id.org/nmdc/nmdc abstract: true - core field: - name: core field - description: basic fields + sequencing field: + name: sequencing field from_schema: https://w3id.org/nmdc/nmdc abstract: true has numeric value: @@ -17727,13 +17724,19 @@ slots: from_schema: https://w3id.org/nmdc/nmdc owner: QuantityValue range: double + core field: + name: core field + description: basic fields + from_schema: https://w3id.org/nmdc/nmdc + abstract: true has unit: name: has unit description: Example "m" from_schema: https://w3id.org/nmdc/nmdc owner: QuantityValue - sequencing field: - name: sequencing field + environment field: + name: environment field + description: field describing environmental aspect of a sample from_schema: https://w3id.org/nmdc/nmdc abstract: true investigation field: diff --git a/nmdc_schema/nmdc_schema_accepting_legacy_ids.py b/nmdc_schema/nmdc_schema_accepting_legacy_ids.py index f408dcda02..01e87d61c4 100644 --- a/nmdc_schema/nmdc_schema_accepting_legacy_ids.py +++ b/nmdc_schema/nmdc_schema_accepting_legacy_ids.py @@ -1,5 +1,5 @@ # Auto generated from nmdc_schema_accepting_legacy_ids.yaml by pythongen.py version: 0.0.1 -# Generation date: 2023-11-27T16:28:28 +# Generation date: 2023-11-28T21:32:31 # Schema: NMDC # # id: https://w3id.org/nmdc/nmdc @@ -30,7 +30,7 @@ from linkml_runtime.utils.metamodelcore import Bool, Curie, Decimal, ElementIdentifier, NCName, NodeIdentifier, URI, URIorCURIE, XSDDate, XSDDateTime, XSDTime metamodel_version = "1.7.0" -version = "v9.1.0" +version = "v9.2.0" # Overwrite dataclasses _init_fn to add **kwargs in __init__ dataclasses._init_fn = dataclasses_init_fn_with_kwargs @@ -122,7 +122,7 @@ # Types class Bytes(int): """ An integer value that corresponds to a size in bytes """ - type_class_uri = XSD.long + type_class_uri = XSD["long"] type_class_curie = "xsd:long" type_name = "bytes" type_model_uri = NMDC.Bytes @@ -130,7 +130,7 @@ class Bytes(int): class DecimalDegree(float): """ A decimal degree expresses latitude or longitude as decimal fractions. """ - type_class_uri = XSD.decimal + type_class_uri = XSD["decimal"] type_class_curie = "xsd:decimal" type_name = "decimal degree" type_model_uri = NMDC.DecimalDegree @@ -138,14 +138,14 @@ class DecimalDegree(float): class LanguageCode(str): """ A language code conforming to ISO_639-1 """ - type_class_uri = XSD.language + type_class_uri = XSD["language"] type_class_curie = "xsd:language" type_name = "language code" type_model_uri = NMDC.LanguageCode class Unit(str): - type_class_uri = XSD.string + type_class_uri = XSD["string"] type_class_curie = "xsd:string" type_name = "unit" type_model_uri = NMDC.Unit @@ -153,7 +153,7 @@ class Unit(str): class String(str): """ A character string """ - type_class_uri = XSD.string + type_class_uri = XSD["string"] type_class_curie = "xsd:string" type_name = "string" type_model_uri = NMDC.String @@ -161,7 +161,7 @@ class String(str): class Integer(int): """ An integer """ - type_class_uri = XSD.integer + type_class_uri = XSD["integer"] type_class_curie = "xsd:integer" type_name = "integer" type_model_uri = NMDC.Integer @@ -169,7 +169,7 @@ class Integer(int): class Boolean(Bool): """ A binary (true or false) value """ - type_class_uri = XSD.boolean + type_class_uri = XSD["boolean"] type_class_curie = "xsd:boolean" type_name = "boolean" type_model_uri = NMDC.Boolean @@ -177,7 +177,7 @@ class Boolean(Bool): class Float(float): """ A real number that conforms to the xsd:float specification """ - type_class_uri = XSD.float + type_class_uri = XSD["float"] type_class_curie = "xsd:float" type_name = "float" type_model_uri = NMDC.Float @@ -185,7 +185,7 @@ class Float(float): class Double(float): """ A real number that conforms to the xsd:double specification """ - type_class_uri = XSD.double + type_class_uri = XSD["double"] type_class_curie = "xsd:double" type_name = "double" type_model_uri = NMDC.Double @@ -193,7 +193,7 @@ class Double(float): class Decimal(Decimal): """ A real number with arbitrary precision that conforms to the xsd:decimal specification """ - type_class_uri = XSD.decimal + type_class_uri = XSD["decimal"] type_class_curie = "xsd:decimal" type_name = "decimal" type_model_uri = NMDC.Decimal @@ -201,7 +201,7 @@ class Decimal(Decimal): class Time(XSDTime): """ A time object represents a (local) time of day, independent of any particular day """ - type_class_uri = XSD.time + type_class_uri = XSD["time"] type_class_curie = "xsd:time" type_name = "time" type_model_uri = NMDC.Time @@ -209,7 +209,7 @@ class Time(XSDTime): class Date(XSDDate): """ a date (year, month and day) in an idealized calendar """ - type_class_uri = XSD.date + type_class_uri = XSD["date"] type_class_curie = "xsd:date" type_name = "date" type_model_uri = NMDC.Date @@ -217,7 +217,7 @@ class Date(XSDDate): class Datetime(XSDDateTime): """ The combination of a date and time """ - type_class_uri = XSD.dateTime + type_class_uri = XSD["dateTime"] type_class_curie = "xsd:dateTime" type_name = "datetime" type_model_uri = NMDC.Datetime @@ -225,7 +225,7 @@ class Datetime(XSDDateTime): class DateOrDatetime(str): """ Either a date or a datetime """ - type_class_uri = LINKML.DateOrDatetime + type_class_uri = LINKML["DateOrDatetime"] type_class_curie = "linkml:DateOrDatetime" type_name = "date_or_datetime" type_model_uri = NMDC.DateOrDatetime @@ -233,7 +233,7 @@ class DateOrDatetime(str): class Uriorcurie(URIorCURIE): """ a URI or a CURIE """ - type_class_uri = XSD.anyURI + type_class_uri = XSD["anyURI"] type_class_curie = "xsd:anyURI" type_name = "uriorcurie" type_model_uri = NMDC.Uriorcurie @@ -241,7 +241,7 @@ class Uriorcurie(URIorCURIE): class Curie(Curie): """ a compact URI """ - type_class_uri = XSD.string + type_class_uri = XSD["string"] type_class_curie = "xsd:string" type_name = "curie" type_model_uri = NMDC.Curie @@ -249,7 +249,7 @@ class Curie(Curie): class Uri(URI): """ a complete URI """ - type_class_uri = XSD.anyURI + type_class_uri = XSD["anyURI"] type_class_curie = "xsd:anyURI" type_name = "uri" type_model_uri = NMDC.Uri @@ -257,7 +257,7 @@ class Uri(URI): class Ncname(NCName): """ Prefix part of CURIE """ - type_class_uri = XSD.string + type_class_uri = XSD["string"] type_class_curie = "xsd:string" type_name = "ncname" type_model_uri = NMDC.Ncname @@ -265,7 +265,7 @@ class Ncname(NCName): class Objectidentifier(ElementIdentifier): """ A URI or CURIE that represents an object in the model. """ - type_class_uri = SHEX.iri + type_class_uri = SHEX["iri"] type_class_curie = "shex:iri" type_name = "objectidentifier" type_model_uri = NMDC.Objectidentifier @@ -273,7 +273,7 @@ class Objectidentifier(ElementIdentifier): class Nodeidentifier(NodeIdentifier): """ A URI, CURIE or BNODE that represents a node in a model. """ - type_class_uri = SHEX.nonLiteral + type_class_uri = SHEX["nonLiteral"] type_class_curie = "shex:nonLiteral" type_name = "nodeidentifier" type_model_uri = NMDC.Nodeidentifier @@ -281,7 +281,7 @@ class Nodeidentifier(NodeIdentifier): class Jsonpointer(str): """ A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. """ - type_class_uri = XSD.string + type_class_uri = XSD["string"] type_class_curie = "xsd:string" type_name = "jsonpointer" type_model_uri = NMDC.Jsonpointer @@ -289,7 +289,7 @@ class Jsonpointer(str): class Jsonpath(str): """ A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. """ - type_class_uri = XSD.string + type_class_uri = XSD["string"] type_class_curie = "xsd:string" type_name = "jsonpath" type_model_uri = NMDC.Jsonpath @@ -297,7 +297,7 @@ class Jsonpath(str): class Sparqlpath(str): """ A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. """ - type_class_uri = XSD.string + type_class_uri = XSD["string"] type_class_curie = "xsd:string" type_name = "sparqlpath" type_model_uri = NMDC.Sparqlpath @@ -305,7 +305,7 @@ class Sparqlpath(str): class ExternalIdentifier(Uriorcurie): """ A CURIE representing an external identifier """ - type_class_uri = XSD.anyURI + type_class_uri = XSD["anyURI"] type_class_curie = "xsd:anyURI" type_name = "external_identifier" type_model_uri = NMDC.ExternalIdentifier @@ -488,7 +488,7 @@ class OrthologyGroupId(FunctionalAnnotationTermId): class FunctionalAnnotationAggMember(YAMLRoot): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.FunctionalAnnotationAggMember + class_class_uri: ClassVar[URIRef] = NMDC["FunctionalAnnotationAggMember"] class_class_curie: ClassVar[str] = "nmdc:FunctionalAnnotationAggMember" class_name: ClassVar[str] = "FunctionalAnnotationAggMember" class_model_uri: ClassVar[URIRef] = NMDC.FunctionalAnnotationAggMember @@ -520,7 +520,7 @@ class Database(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Database + class_class_uri: ClassVar[URIRef] = NMDC["Database"] class_class_curie: ClassVar[str] = "nmdc:Database" class_name: ClassVar[str] = "Database" class_model_uri: ClassVar[URIRef] = NMDC.Database @@ -633,7 +633,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class Protocol(YAMLRoot): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Protocol + class_class_uri: ClassVar[URIRef] = NMDC["Protocol"] class_class_curie: ClassVar[str] = "nmdc:Protocol" class_name: ClassVar[str] = "Protocol" class_model_uri: ClassVar[URIRef] = NMDC.Protocol @@ -655,7 +655,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class QualityControlReport(YAMLRoot): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.QualityControlReport + class_class_uri: ClassVar[URIRef] = NMDC["QualityControlReport"] class_class_curie: ClassVar[str] = "nmdc:QualityControlReport" class_name: ClassVar[str] = "QualityControlReport" class_model_uri: ClassVar[URIRef] = NMDC.QualityControlReport @@ -681,7 +681,7 @@ class Doi(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Doi + class_class_uri: ClassVar[URIRef] = NMDC["Doi"] class_class_curie: ClassVar[str] = "nmdc:Doi" class_name: ClassVar[str] = "Doi" class_model_uri: ClassVar[URIRef] = NMDC.Doi @@ -717,7 +717,7 @@ class CreditAssociation(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = PROV.Association + class_class_uri: ClassVar[URIRef] = PROV["Association"] class_class_curie: ClassVar[str] = "prov:Association" class_name: ClassVar[str] = "CreditAssociation" class_model_uri: ClassVar[URIRef] = NMDC.CreditAssociation @@ -751,7 +751,7 @@ class NamedThing(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.NamedThing + class_class_uri: ClassVar[URIRef] = NMDC["NamedThing"] class_class_curie: ClassVar[str] = "nmdc:NamedThing" class_name: ClassVar[str] = "NamedThing" class_model_uri: ClassVar[URIRef] = NMDC.NamedThing @@ -788,7 +788,7 @@ class DataObject(NamedThing): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.DataObject + class_class_uri: ClassVar[URIRef] = NMDC["DataObject"] class_class_curie: ClassVar[str] = "nmdc:DataObject" class_name: ClassVar[str] = "DataObject" class_model_uri: ClassVar[URIRef] = NMDC.DataObject @@ -852,7 +852,7 @@ class Study(NamedThing): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Study + class_class_uri: ClassVar[URIRef] = NMDC["Study"] class_class_curie: ClassVar[str] = "nmdc:Study" class_name: ClassVar[str] = "Study" class_model_uri: ClassVar[URIRef] = NMDC.Study @@ -1020,7 +1020,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class InstrumentMixin(YAMLRoot): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.InstrumentMixin + class_class_uri: ClassVar[URIRef] = NMDC["InstrumentMixin"] class_class_curie: ClassVar[str] = "nmdc:InstrumentMixin" class_name: ClassVar[str] = "InstrumentMixin" class_model_uri: ClassVar[URIRef] = NMDC.InstrumentMixin @@ -1049,7 +1049,7 @@ class DataGeneratingInstrument(NamedThing): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.DataGeneratingInstrument + class_class_uri: ClassVar[URIRef] = NMDC["DataGeneratingInstrument"] class_class_curie: ClassVar[str] = "nmdc:DataGeneratingInstrument" class_name: ClassVar[str] = "DataGeneratingInstrument" class_model_uri: ClassVar[URIRef] = NMDC.DataGeneratingInstrument @@ -1084,7 +1084,7 @@ class AnonymousInstrument(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.AnonymousInstrument + class_class_uri: ClassVar[URIRef] = NMDC["AnonymousInstrument"] class_class_curie: ClassVar[str] = "nmdc:AnonymousInstrument" class_name: ClassVar[str] = "AnonymousInstrument" class_model_uri: ClassVar[URIRef] = NMDC.AnonymousInstrument @@ -1110,7 +1110,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MaterialEntity(NamedThing): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MaterialEntity + class_class_uri: ClassVar[URIRef] = NMDC["MaterialEntity"] class_class_curie: ClassVar[str] = "nmdc:MaterialEntity" class_name: ClassVar[str] = "MaterialEntity" class_model_uri: ClassVar[URIRef] = NMDC.MaterialEntity @@ -1124,7 +1124,7 @@ class Biosample(MaterialEntity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Biosample + class_class_uri: ClassVar[URIRef] = NMDC["Biosample"] class_class_curie: ClassVar[str] = "nmdc:Biosample" class_name: ClassVar[str] = "Biosample" class_model_uri: ClassVar[URIRef] = NMDC.Biosample @@ -3703,7 +3703,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class ProcessedSample(MaterialEntity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ProcessedSample + class_class_uri: ClassVar[URIRef] = NMDC["ProcessedSample"] class_class_curie: ClassVar[str] = "nmdc:ProcessedSample" class_name: ClassVar[str] = "ProcessedSample" class_model_uri: ClassVar[URIRef] = NMDC.ProcessedSample @@ -3740,7 +3740,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class AnalyticalSample(MaterialEntity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.AnalyticalSample + class_class_uri: ClassVar[URIRef] = NMDC["AnalyticalSample"] class_class_curie: ClassVar[str] = "nmdc:AnalyticalSample" class_name: ClassVar[str] = "AnalyticalSample" class_model_uri: ClassVar[URIRef] = NMDC.AnalyticalSample @@ -3760,7 +3760,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class Site(MaterialEntity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Site + class_class_uri: ClassVar[URIRef] = NMDC["Site"] class_class_curie: ClassVar[str] = "nmdc:Site" class_name: ClassVar[str] = "Site" class_model_uri: ClassVar[URIRef] = NMDC.Site @@ -3783,7 +3783,7 @@ class FieldResearchSite(Site): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.FieldResearchSite + class_class_uri: ClassVar[URIRef] = NMDC["FieldResearchSite"] class_class_curie: ClassVar[str] = "nmdc:FieldResearchSite" class_name: ClassVar[str] = "FieldResearchSite" class_model_uri: ClassVar[URIRef] = NMDC.FieldResearchSite @@ -3902,7 +3902,7 @@ def __new__(cls, *args, **kwargs): class CollectingBiosamplesFromSite(PlannedProcess): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.CollectingBiosamplesFromSite + class_class_uri: ClassVar[URIRef] = NMDC["CollectingBiosamplesFromSite"] class_class_curie: ClassVar[str] = "nmdc:CollectingBiosamplesFromSite" class_name: ClassVar[str] = "CollectingBiosamplesFromSite" class_model_uri: ClassVar[URIRef] = NMDC.CollectingBiosamplesFromSite @@ -3941,7 +3941,7 @@ class BiosampleProcessing(PlannedProcess): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.BiosampleProcessing + class_class_uri: ClassVar[URIRef] = NMDC["BiosampleProcessing"] class_class_curie: ClassVar[str] = "nmdc:BiosampleProcessing" class_name: ClassVar[str] = "BiosampleProcessing" class_model_uri: ClassVar[URIRef] = NMDC.BiosampleProcessing @@ -3970,7 +3970,7 @@ class Pooling(BiosampleProcessing): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Pooling + class_class_uri: ClassVar[URIRef] = NMDC["Pooling"] class_class_curie: ClassVar[str] = "nmdc:Pooling" class_name: ClassVar[str] = "Pooling" class_model_uri: ClassVar[URIRef] = NMDC.Pooling @@ -4004,7 +4004,7 @@ class Extraction(BiosampleProcessing): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Extraction + class_class_uri: ClassVar[URIRef] = NMDC["Extraction"] class_class_curie: ClassVar[str] = "nmdc:Extraction" class_name: ClassVar[str] = "Extraction" class_model_uri: ClassVar[URIRef] = NMDC.Extraction @@ -4063,7 +4063,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class LibraryPreparation(BiosampleProcessing): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.LibraryPreparation + class_class_uri: ClassVar[URIRef] = NMDC["LibraryPreparation"] class_class_curie: ClassVar[str] = "nmdc:LibraryPreparation" class_name: ClassVar[str] = "LibraryPreparation" class_model_uri: ClassVar[URIRef] = NMDC.LibraryPreparation @@ -4117,7 +4117,7 @@ class SubSamplingProcess(PlannedProcess): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.SubSamplingProcess + class_class_uri: ClassVar[URIRef] = NMDC["SubSamplingProcess"] class_class_curie: ClassVar[str] = "nmdc:SubSamplingProcess" class_name: ClassVar[str] = "SubSamplingProcess" class_model_uri: ClassVar[URIRef] = NMDC.SubSamplingProcess @@ -4171,7 +4171,7 @@ class MixingProcess(PlannedProcess): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MixingProcess + class_class_uri: ClassVar[URIRef] = NMDC["MixingProcess"] class_class_curie: ClassVar[str] = "nmdc:MixingProcess" class_name: ClassVar[str] = "MixingProcess" class_model_uri: ClassVar[URIRef] = NMDC.MixingProcess @@ -4215,7 +4215,7 @@ class FiltrationProcess(PlannedProcess): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.FiltrationProcess + class_class_uri: ClassVar[URIRef] = NMDC["FiltrationProcess"] class_class_curie: ClassVar[str] = "nmdc:FiltrationProcess" class_name: ClassVar[str] = "FiltrationProcess" class_model_uri: ClassVar[URIRef] = NMDC.FiltrationProcess @@ -4277,7 +4277,7 @@ class OmicsProcessing(PlannedProcess): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.OmicsProcessing + class_class_uri: ClassVar[URIRef] = NMDC["OmicsProcessing"] class_class_curie: ClassVar[str] = "nmdc:OmicsProcessing" class_name: ClassVar[str] = "OmicsProcessing" class_model_uri: ClassVar[URIRef] = NMDC.OmicsProcessing @@ -4402,7 +4402,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class OntologyClass(NamedThing): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.OntologyClass + class_class_uri: ClassVar[URIRef] = NMDC["OntologyClass"] class_class_curie: ClassVar[str] = "nmdc:OntologyClass" class_name: ClassVar[str] = "OntologyClass" class_model_uri: ClassVar[URIRef] = NMDC.OntologyClass @@ -4422,7 +4422,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class EnvironmentalMaterialTerm(OntologyClass): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.EnvironmentalMaterialTerm + class_class_uri: ClassVar[URIRef] = NMDC["EnvironmentalMaterialTerm"] class_class_curie: ClassVar[str] = "nmdc:EnvironmentalMaterialTerm" class_name: ClassVar[str] = "EnvironmentalMaterialTerm" class_model_uri: ClassVar[URIRef] = NMDC.EnvironmentalMaterialTerm @@ -4446,7 +4446,7 @@ class AttributeValue(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.AttributeValue + class_class_uri: ClassVar[URIRef] = NMDC["AttributeValue"] class_class_curie: ClassVar[str] = "nmdc:AttributeValue" class_name: ClassVar[str] = "AttributeValue" class_model_uri: ClassVar[URIRef] = NMDC.AttributeValue @@ -4475,7 +4475,7 @@ class QuantityValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.QuantityValue + class_class_uri: ClassVar[URIRef] = NMDC["QuantityValue"] class_class_curie: ClassVar[str] = "nmdc:QuantityValue" class_name: ClassVar[str] = "QuantityValue" class_model_uri: ClassVar[URIRef] = NMDC.QuantityValue @@ -4512,7 +4512,7 @@ class ImageValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ImageValue + class_class_uri: ClassVar[URIRef] = NMDC["ImageValue"] class_class_curie: ClassVar[str] = "nmdc:ImageValue" class_name: ClassVar[str] = "ImageValue" class_model_uri: ClassVar[URIRef] = NMDC.ImageValue @@ -4541,7 +4541,7 @@ class PersonValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.PersonValue + class_class_uri: ClassVar[URIRef] = NMDC["PersonValue"] class_class_curie: ClassVar[str] = "nmdc:PersonValue" class_name: ClassVar[str] = "PersonValue" class_model_uri: ClassVar[URIRef] = NMDC.PersonValue @@ -4580,7 +4580,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MagBin(YAMLRoot): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MagBin + class_class_uri: ClassVar[URIRef] = NMDC["MagBin"] class_class_curie: ClassVar[str] = "nmdc:MagBin" class_name: ClassVar[str] = "MagBin" class_model_uri: ClassVar[URIRef] = NMDC.MagBin @@ -4677,7 +4677,7 @@ class MetaboliteQuantification(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetaboliteQuantification + class_class_uri: ClassVar[URIRef] = NMDC["MetaboliteQuantification"] class_class_curie: ClassVar[str] = "nmdc:MetaboliteQuantification" class_name: ClassVar[str] = "MetaboliteQuantification" class_model_uri: ClassVar[URIRef] = NMDC.MetaboliteQuantification @@ -4707,7 +4707,7 @@ class PeptideQuantification(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.PeptideQuantification + class_class_uri: ClassVar[URIRef] = NMDC["PeptideQuantification"] class_class_curie: ClassVar[str] = "nmdc:PeptideQuantification" class_name: ClassVar[str] = "PeptideQuantification" class_model_uri: ClassVar[URIRef] = NMDC.PeptideQuantification @@ -4749,7 +4749,7 @@ class ProteinQuantification(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ProteinQuantification + class_class_uri: ClassVar[URIRef] = NMDC["ProteinQuantification"] class_class_curie: ClassVar[str] = "nmdc:ProteinQuantification" class_name: ClassVar[str] = "ProteinQuantification" class_model_uri: ClassVar[URIRef] = NMDC.ProteinQuantification @@ -4788,7 +4788,7 @@ class ChemicalEntity(OntologyClass): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ChemicalEntity + class_class_uri: ClassVar[URIRef] = NMDC["ChemicalEntity"] class_class_curie: ClassVar[str] = "nmdc:ChemicalEntity" class_name: ClassVar[str] = "ChemicalEntity" class_model_uri: ClassVar[URIRef] = NMDC.ChemicalEntity @@ -4828,7 +4828,7 @@ class GeneProduct(NamedThing): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.GeneProduct + class_class_uri: ClassVar[URIRef] = NMDC["GeneProduct"] class_class_curie: ClassVar[str] = "nmdc:GeneProduct" class_name: ClassVar[str] = "GeneProduct" class_model_uri: ClassVar[URIRef] = NMDC.GeneProduct @@ -4851,7 +4851,7 @@ class TextValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.TextValue + class_class_uri: ClassVar[URIRef] = NMDC["TextValue"] class_class_curie: ClassVar[str] = "nmdc:TextValue" class_name: ClassVar[str] = "TextValue" class_model_uri: ClassVar[URIRef] = NMDC.TextValue @@ -4871,7 +4871,7 @@ class UrlValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.UrlValue + class_class_uri: ClassVar[URIRef] = NMDC["UrlValue"] class_class_curie: ClassVar[str] = "nmdc:UrlValue" class_name: ClassVar[str] = "UrlValue" class_model_uri: ClassVar[URIRef] = NMDC.UrlValue @@ -4883,7 +4883,7 @@ class TimestampValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.TimestampValue + class_class_uri: ClassVar[URIRef] = NMDC["TimestampValue"] class_class_curie: ClassVar[str] = "nmdc:TimestampValue" class_name: ClassVar[str] = "TimestampValue" class_model_uri: ClassVar[URIRef] = NMDC.TimestampValue @@ -4896,7 +4896,7 @@ class IntegerValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.IntegerValue + class_class_uri: ClassVar[URIRef] = NMDC["IntegerValue"] class_class_curie: ClassVar[str] = "nmdc:IntegerValue" class_name: ClassVar[str] = "IntegerValue" class_model_uri: ClassVar[URIRef] = NMDC.IntegerValue @@ -4917,7 +4917,7 @@ class BooleanValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.BooleanValue + class_class_uri: ClassVar[URIRef] = NMDC["BooleanValue"] class_class_curie: ClassVar[str] = "nmdc:BooleanValue" class_name: ClassVar[str] = "BooleanValue" class_model_uri: ClassVar[URIRef] = NMDC.BooleanValue @@ -4938,7 +4938,7 @@ class ControlledTermValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ControlledTermValue + class_class_uri: ClassVar[URIRef] = NMDC["ControlledTermValue"] class_class_curie: ClassVar[str] = "nmdc:ControlledTermValue" class_name: ClassVar[str] = "ControlledTermValue" class_model_uri: ClassVar[URIRef] = NMDC.ControlledTermValue @@ -4959,7 +4959,7 @@ class ControlledIdentifiedTermValue(ControlledTermValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ControlledIdentifiedTermValue + class_class_uri: ClassVar[URIRef] = NMDC["ControlledIdentifiedTermValue"] class_class_curie: ClassVar[str] = "nmdc:ControlledIdentifiedTermValue" class_name: ClassVar[str] = "ControlledIdentifiedTermValue" class_model_uri: ClassVar[URIRef] = NMDC.ControlledIdentifiedTermValue @@ -4982,7 +4982,7 @@ class GeolocationValue(AttributeValue): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.GeolocationValue + class_class_uri: ClassVar[URIRef] = NMDC["GeolocationValue"] class_class_curie: ClassVar[str] = "nmdc:GeolocationValue" class_name: ClassVar[str] = "GeolocationValue" class_model_uri: ClassVar[URIRef] = NMDC.GeolocationValue @@ -5016,7 +5016,7 @@ class Activity(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Activity + class_class_uri: ClassVar[URIRef] = NMDC["Activity"] class_class_curie: ClassVar[str] = "nmdc:Activity" class_name: ClassVar[str] = "Activity" class_model_uri: ClassVar[URIRef] = NMDC.Activity @@ -5059,7 +5059,7 @@ class WorkflowExecutionActivity(Activity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.WorkflowExecutionActivity + class_class_uri: ClassVar[URIRef] = NMDC["WorkflowExecutionActivity"] class_class_curie: ClassVar[str] = "nmdc:WorkflowExecutionActivity" class_name: ClassVar[str] = "WorkflowExecutionActivity" class_model_uri: ClassVar[URIRef] = NMDC.WorkflowExecutionActivity @@ -5135,7 +5135,7 @@ class MetagenomeAssembly(WorkflowExecutionActivity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetagenomeAssembly + class_class_uri: ClassVar[URIRef] = NMDC["MetagenomeAssembly"] class_class_curie: ClassVar[str] = "nmdc:MetagenomeAssembly" class_name: ClassVar[str] = "MetagenomeAssembly" class_model_uri: ClassVar[URIRef] = NMDC.MetagenomeAssembly @@ -5277,7 +5277,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MetatranscriptomeAssembly(WorkflowExecutionActivity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetatranscriptomeAssembly + class_class_uri: ClassVar[URIRef] = NMDC["MetatranscriptomeAssembly"] class_class_curie: ClassVar[str] = "nmdc:MetatranscriptomeAssembly" class_name: ClassVar[str] = "MetatranscriptomeAssembly" class_model_uri: ClassVar[URIRef] = NMDC.MetatranscriptomeAssembly @@ -5419,7 +5419,7 @@ class MetagenomeAnnotationActivity(WorkflowExecutionActivity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetagenomeAnnotationActivity + class_class_uri: ClassVar[URIRef] = NMDC["MetagenomeAnnotationActivity"] class_class_curie: ClassVar[str] = "nmdc:MetagenomeAnnotationActivity" class_name: ClassVar[str] = "MetagenomeAnnotationActivity" class_model_uri: ClassVar[URIRef] = NMDC.MetagenomeAnnotationActivity @@ -5454,7 +5454,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MetatranscriptomeAnnotationActivity(WorkflowExecutionActivity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetatranscriptomeAnnotationActivity + class_class_uri: ClassVar[URIRef] = NMDC["MetatranscriptomeAnnotationActivity"] class_class_curie: ClassVar[str] = "nmdc:MetatranscriptomeAnnotationActivity" class_name: ClassVar[str] = "MetatranscriptomeAnnotationActivity" class_model_uri: ClassVar[URIRef] = NMDC.MetatranscriptomeAnnotationActivity @@ -5492,7 +5492,7 @@ class MetatranscriptomeActivity(WorkflowExecutionActivity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetatranscriptomeActivity + class_class_uri: ClassVar[URIRef] = NMDC["MetatranscriptomeActivity"] class_class_curie: ClassVar[str] = "nmdc:MetatranscriptomeActivity" class_name: ClassVar[str] = "MetatranscriptomeActivity" class_model_uri: ClassVar[URIRef] = NMDC.MetatranscriptomeActivity @@ -5525,7 +5525,7 @@ class MagsAnalysisActivity(WorkflowExecutionActivity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MagsAnalysisActivity + class_class_uri: ClassVar[URIRef] = NMDC["MagsAnalysisActivity"] class_class_curie: ClassVar[str] = "nmdc:MagsAnalysisActivity" class_name: ClassVar[str] = "MagsAnalysisActivity" class_model_uri: ClassVar[URIRef] = NMDC.MagsAnalysisActivity @@ -5584,7 +5584,7 @@ class MetagenomeSequencingActivity(WorkflowExecutionActivity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetagenomeSequencingActivity + class_class_uri: ClassVar[URIRef] = NMDC["MetagenomeSequencingActivity"] class_class_curie: ClassVar[str] = "nmdc:MetagenomeSequencingActivity" class_name: ClassVar[str] = "MetagenomeSequencingActivity" class_model_uri: ClassVar[URIRef] = NMDC.MetagenomeSequencingActivity @@ -5616,7 +5616,7 @@ class ReadQcAnalysisActivity(WorkflowExecutionActivity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ReadQcAnalysisActivity + class_class_uri: ClassVar[URIRef] = NMDC["ReadQcAnalysisActivity"] class_class_curie: ClassVar[str] = "nmdc:ReadQcAnalysisActivity" class_name: ClassVar[str] = "ReadQcAnalysisActivity" class_model_uri: ClassVar[URIRef] = NMDC.ReadQcAnalysisActivity @@ -5677,7 +5677,7 @@ class ReadBasedTaxonomyAnalysisActivity(WorkflowExecutionActivity): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ReadBasedTaxonomyAnalysisActivity + class_class_uri: ClassVar[URIRef] = NMDC["ReadBasedTaxonomyAnalysisActivity"] class_class_curie: ClassVar[str] = "nmdc:ReadBasedTaxonomyAnalysisActivity" class_name: ClassVar[str] = "ReadBasedTaxonomyAnalysisActivity" class_model_uri: ClassVar[URIRef] = NMDC.ReadBasedTaxonomyAnalysisActivity @@ -5707,7 +5707,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MetabolomicsAnalysisActivity(WorkflowExecutionActivity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetabolomicsAnalysisActivity + class_class_uri: ClassVar[URIRef] = NMDC["MetabolomicsAnalysisActivity"] class_class_curie: ClassVar[str] = "nmdc:MetabolomicsAnalysisActivity" class_name: ClassVar[str] = "MetabolomicsAnalysisActivity" class_model_uri: ClassVar[URIRef] = NMDC.MetabolomicsAnalysisActivity @@ -5743,7 +5743,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MetaproteomicsAnalysisActivity(WorkflowExecutionActivity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MetaproteomicsAnalysisActivity + class_class_uri: ClassVar[URIRef] = NMDC["MetaproteomicsAnalysisActivity"] class_class_curie: ClassVar[str] = "nmdc:MetaproteomicsAnalysisActivity" class_name: ClassVar[str] = "MetaproteomicsAnalysisActivity" class_model_uri: ClassVar[URIRef] = NMDC.MetaproteomicsAnalysisActivity @@ -5779,7 +5779,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class NomAnalysisActivity(WorkflowExecutionActivity): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.NomAnalysisActivity + class_class_uri: ClassVar[URIRef] = NMDC["NomAnalysisActivity"] class_class_curie: ClassVar[str] = "nmdc:NomAnalysisActivity" class_name: ClassVar[str] = "NomAnalysisActivity" class_model_uri: ClassVar[URIRef] = NMDC.NomAnalysisActivity @@ -5848,7 +5848,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MaterialContainer(YAMLRoot): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MaterialContainer + class_class_uri: ClassVar[URIRef] = NMDC["MaterialContainer"] class_class_curie: ClassVar[str] = "nmdc:MaterialContainer" class_name: ClassVar[str] = "MaterialContainer" class_model_uri: ClassVar[URIRef] = NMDC.MaterialContainer @@ -5870,7 +5870,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class MaterialSample(NamedThing): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.MaterialSample + class_class_uri: ClassVar[URIRef] = NMDC["MaterialSample"] class_class_curie: ClassVar[str] = "nmdc:MaterialSample" class_name: ClassVar[str] = "MaterialSample" class_model_uri: ClassVar[URIRef] = NMDC.MaterialSample @@ -5920,7 +5920,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]): class ReactionActivity(YAMLRoot): _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ReactionActivity + class_class_uri: ClassVar[URIRef] = NMDC["ReactionActivity"] class_class_curie: ClassVar[str] = "nmdc:ReactionActivity" class_name: ClassVar[str] = "ReactionActivity" class_model_uri: ClassVar[URIRef] = NMDC.ReactionActivity @@ -5953,7 +5953,7 @@ class GenomeFeature(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.GenomeFeature + class_class_uri: ClassVar[URIRef] = NMDC["GenomeFeature"] class_class_curie: ClassVar[str] = "nmdc:GenomeFeature" class_name: ClassVar[str] = "GenomeFeature" class_model_uri: ClassVar[URIRef] = NMDC.GenomeFeature @@ -6009,7 +6009,7 @@ class FunctionalAnnotationTerm(OntologyClass): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.FunctionalAnnotationTerm + class_class_uri: ClassVar[URIRef] = NMDC["FunctionalAnnotationTerm"] class_class_curie: ClassVar[str] = "nmdc:FunctionalAnnotationTerm" class_name: ClassVar[str] = "FunctionalAnnotationTerm" class_model_uri: ClassVar[URIRef] = NMDC.FunctionalAnnotationTerm @@ -6023,7 +6023,7 @@ class Pathway(FunctionalAnnotationTerm): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Pathway + class_class_uri: ClassVar[URIRef] = NMDC["Pathway"] class_class_curie: ClassVar[str] = "nmdc:Pathway" class_name: ClassVar[str] = "Pathway" class_model_uri: ClassVar[URIRef] = NMDC.Pathway @@ -6054,7 +6054,7 @@ class Reaction(FunctionalAnnotationTerm): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.Reaction + class_class_uri: ClassVar[URIRef] = NMDC["Reaction"] class_class_curie: ClassVar[str] = "nmdc:Reaction" class_name: ClassVar[str] = "Reaction" class_model_uri: ClassVar[URIRef] = NMDC.Reaction @@ -6115,7 +6115,7 @@ class ReactionParticipant(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.ReactionParticipant + class_class_uri: ClassVar[URIRef] = NMDC["ReactionParticipant"] class_class_curie: ClassVar[str] = "nmdc:ReactionParticipant" class_name: ClassVar[str] = "ReactionParticipant" class_model_uri: ClassVar[URIRef] = NMDC.ReactionParticipant @@ -6140,7 +6140,7 @@ class OrthologyGroup(FunctionalAnnotationTerm): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.OrthologyGroup + class_class_uri: ClassVar[URIRef] = NMDC["OrthologyGroup"] class_class_curie: ClassVar[str] = "nmdc:OrthologyGroup" class_name: ClassVar[str] = "OrthologyGroup" class_model_uri: ClassVar[URIRef] = NMDC.OrthologyGroup @@ -6166,7 +6166,7 @@ class FunctionalAnnotation(YAMLRoot): """ _inherited_slots: ClassVar[List[str]] = [] - class_class_uri: ClassVar[URIRef] = NMDC.FunctionalAnnotation + class_class_uri: ClassVar[URIRef] = NMDC["FunctionalAnnotation"] class_class_curie: ClassVar[str] = "nmdc:FunctionalAnnotation" class_name: ClassVar[str] = "FunctionalAnnotation" class_model_uri: ClassVar[URIRef] = NMDC.FunctionalAnnotation @@ -6888,62 +6888,159 @@ class SampleTypeEnum(EnumDefinitionImpl): name="SampleTypeEnum", ) -class SubstructureTypeEnum(EnumDefinitionImpl): +class SrKerogTypeEnum(EnumDefinitionImpl): - crawlspace = PermissibleValue(text="crawlspace") - basement = PermissibleValue(text="basement") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="SubstructureTypeEnum", + name="SrKerogTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "slab on grade", - PermissibleValue(text="slab on grade")) + setattr(cls, "Type I", + PermissibleValue(text="Type I")) + setattr(cls, "Type II", + PermissibleValue(text="Type II")) + setattr(cls, "Type III", + PermissibleValue(text="Type III")) + setattr(cls, "Type IV", + PermissibleValue(text="Type IV")) -class WindowCoverEnum(EnumDefinitionImpl): +class MechStrucEnum(EnumDefinitionImpl): - blinds = PermissibleValue(text="blinds") - curtains = PermissibleValue(text="curtains") - none = PermissibleValue(text="none") + subway = PermissibleValue(text="subway") + coach = PermissibleValue(text="coach") + carriage = PermissibleValue(text="carriage") + elevator = PermissibleValue(text="elevator") + escalator = PermissibleValue(text="escalator") + boat = PermissibleValue(text="boat") + train = PermissibleValue(text="train") + car = PermissibleValue(text="car") + bus = PermissibleValue(text="bus") _defn = EnumDefinition( - name="WindowCoverEnum", + name="MechStrucEnum", ) -class RoomLocEnum(EnumDefinitionImpl): +class FilterTypeEnum(EnumDefinitionImpl): + + HEPA = PermissibleValue(text="HEPA") + electrostatic = PermissibleValue(text="electrostatic") _defn = EnumDefinition( - name="RoomLocEnum", + name="FilterTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "corner room", - PermissibleValue(text="corner room")) - setattr(cls, "interior room", - PermissibleValue(text="interior room")) - setattr(cls, "exterior wall", - PermissibleValue(text="exterior wall")) + setattr(cls, "particulate air filter", + PermissibleValue(text="particulate air filter")) + setattr(cls, "chemical air filter", + PermissibleValue(text="chemical air filter")) + setattr(cls, "low-MERV pleated media", + PermissibleValue(text="low-MERV pleated media")) + setattr(cls, "gas-phase or ultraviolet air treatments", + PermissibleValue(text="gas-phase or ultraviolet air treatments")) -class DoorTypeMetalEnum(EnumDefinitionImpl): +class OxyStatSampEnum(EnumDefinitionImpl): - collapsible = PermissibleValue(text="collapsible") - hollow = PermissibleValue(text="hollow") + aerobic = PermissibleValue(text="aerobic") + anaerobic = PermissibleValue(text="anaerobic") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="DoorTypeMetalEnum", + name="OxyStatSampEnum", + ) + +class WindowTypeEnum(EnumDefinitionImpl): + + _defn = EnumDefinition( + name="WindowTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "corrugated steel", - PermissibleValue(text="corrugated steel")) - setattr(cls, "rolling shutters", - PermissibleValue(text="rolling shutters")) - setattr(cls, "steel plate", - PermissibleValue(text="steel plate")) + setattr(cls, "single-hung sash window", + PermissibleValue(text="single-hung sash window")) + setattr(cls, "horizontal sash window", + PermissibleValue(text="horizontal sash window")) + setattr(cls, "fixed window", + PermissibleValue(text="fixed window")) + +class ArchStrucEnum(EnumDefinitionImpl): + + building = PermissibleValue(text="building") + shed = PermissibleValue(text="shed") + home = PermissibleValue(text="home") + + _defn = EnumDefinition( + name="ArchStrucEnum", + ) + +class CeilFinishMatEnum(EnumDefinitionImpl): + + drywall = PermissibleValue(text="drywall") + tiles = PermissibleValue(text="tiles") + PVC = PermissibleValue(text="PVC") + plasterboard = PermissibleValue(text="plasterboard") + metal = PermissibleValue(text="metal") + fiberglass = PermissibleValue(text="fiberglass") + stucco = PermissibleValue(text="stucco") + wood = PermissibleValue(text="wood") + + _defn = EnumDefinition( + name="CeilFinishMatEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "mineral fibre", + PermissibleValue(text="mineral fibre")) + setattr(cls, "mineral wool/calcium silicate", + PermissibleValue(text="mineral wool/calcium silicate")) + +class QuadPosEnum(EnumDefinitionImpl): + + _defn = EnumDefinition( + name="QuadPosEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "North side", + PermissibleValue(text="North side")) + setattr(cls, "West side", + PermissibleValue(text="West side")) + setattr(cls, "South side", + PermissibleValue(text="South side")) + setattr(cls, "East side", + PermissibleValue(text="East side")) + +class HcrGeolAgeEnum(EnumDefinitionImpl): + + Archean = PermissibleValue(text="Archean") + Cambrian = PermissibleValue(text="Cambrian") + Carboniferous = PermissibleValue(text="Carboniferous") + Cenozoic = PermissibleValue(text="Cenozoic") + Cretaceous = PermissibleValue(text="Cretaceous") + Devonian = PermissibleValue(text="Devonian") + Jurassic = PermissibleValue(text="Jurassic") + Mesozoic = PermissibleValue(text="Mesozoic") + Neogene = PermissibleValue(text="Neogene") + Ordovician = PermissibleValue(text="Ordovician") + Paleogene = PermissibleValue(text="Paleogene") + Paleozoic = PermissibleValue(text="Paleozoic") + Permian = PermissibleValue(text="Permian") + Precambrian = PermissibleValue(text="Precambrian") + Proterozoic = PermissibleValue(text="Proterozoic") + Silurian = PermissibleValue(text="Silurian") + Triassic = PermissibleValue(text="Triassic") + other = PermissibleValue(text="other") + + _defn = EnumDefinition( + name="HcrGeolAgeEnum", + ) class OccupDocumentEnum(EnumDefinitionImpl): @@ -6961,201 +7058,238 @@ def _addvals(cls): setattr(cls, "manual count", PermissibleValue(text="manual count")) -class BiolStatEnum(EnumDefinitionImpl): +class PlantGrowthMedEnum(EnumDefinitionImpl): - wild = PermissibleValue(text="wild") - natural = PermissibleValue(text="natural") - hybrid = PermissibleValue(text="hybrid") - mutant = PermissibleValue(text="mutant") + perlite = PermissibleValue(text="perlite") + pumice = PermissibleValue(text="pumice") + sand = PermissibleValue(text="sand") + soil = PermissibleValue(text="soil") + vermiculite = PermissibleValue(text="vermiculite") + water = PermissibleValue(text="water") _defn = EnumDefinition( - name="BiolStatEnum", + name="PlantGrowthMedEnum", ) @classmethod def _addvals(cls): - setattr(cls, "semi-natural", - PermissibleValue(text="semi-natural")) - setattr(cls, "inbred line", - PermissibleValue(text="inbred line")) - setattr(cls, "breeder's line", - PermissibleValue(text="breeder's line")) - setattr(cls, "clonal selection", - PermissibleValue(text="clonal selection")) + setattr(cls, "other artificial liquid medium", + PermissibleValue(text="other artificial liquid medium")) + setattr(cls, "other artificial solid medium", + PermissibleValue(text="other artificial solid medium")) + setattr(cls, "peat moss", + PermissibleValue(text="peat moss")) -class BuildDocsEnum(EnumDefinitionImpl): +class CeilCondEnum(EnumDefinitionImpl): - schedule = PermissibleValue(text="schedule") - sections = PermissibleValue(text="sections") - submittals = PermissibleValue(text="submittals") - windows = PermissibleValue(text="windows") + new = PermissibleValue(text="new") + damaged = PermissibleValue(text="damaged") + rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="BuildDocsEnum", + name="CeilCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "building information model", - PermissibleValue(text="building information model")) - setattr(cls, "commissioning report", - PermissibleValue(text="commissioning report")) - setattr(cls, "complaint logs", - PermissibleValue(text="complaint logs")) - setattr(cls, "contract administration", - PermissibleValue(text="contract administration")) - setattr(cls, "cost estimate", - PermissibleValue(text="cost estimate")) - setattr(cls, "janitorial schedules or logs", - PermissibleValue(text="janitorial schedules or logs")) - setattr(cls, "maintenance plans", - PermissibleValue(text="maintenance plans")) - setattr(cls, "shop drawings", - PermissibleValue(text="shop drawings")) - setattr(cls, "ventilation system", - PermissibleValue(text="ventilation system")) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) -class DrawingsEnum(EnumDefinitionImpl): +class GenderRestroomEnum(EnumDefinitionImpl): - operation = PermissibleValue(text="operation") - construction = PermissibleValue(text="construction") - bid = PermissibleValue(text="bid") - design = PermissibleValue(text="design") - diagram = PermissibleValue(text="diagram") - sketch = PermissibleValue(text="sketch") + female = PermissibleValue(text="female") + male = PermissibleValue(text="male") + unisex = PermissibleValue(text="unisex") _defn = EnumDefinition( - name="DrawingsEnum", + name="GenderRestroomEnum", ) @classmethod def _addvals(cls): - setattr(cls, "as built", - PermissibleValue(text="as built")) - setattr(cls, "building navigation map", - PermissibleValue(text="building navigation map")) + setattr(cls, "all gender", + PermissibleValue(text="all gender")) + setattr(cls, "gender neurtral", + PermissibleValue(text="gender neurtral")) + setattr(cls, "male and female", + PermissibleValue(text="male and female")) -class CeilTextureEnum(EnumDefinitionImpl): +class VisMediaEnum(EnumDefinitionImpl): - knockdown = PermissibleValue(text="knockdown") - popcorn = PermissibleValue(text="popcorn") - smooth = PermissibleValue(text="smooth") - swirl = PermissibleValue(text="swirl") + photos = PermissibleValue(text="photos") + videos = PermissibleValue(text="videos") + interiors = PermissibleValue(text="interiors") + equipment = PermissibleValue(text="equipment") _defn = EnumDefinition( - name="CeilTextureEnum", + name="VisMediaEnum", ) @classmethod def _addvals(cls): - setattr(cls, "crows feet", - PermissibleValue(text="crows feet")) - setattr(cls, "crows-foot stomp", - PermissibleValue(text="crows-foot stomp")) - setattr(cls, "double skip", - PermissibleValue(text="double skip")) - setattr(cls, "hawk and trowel", - PermissibleValue(text="hawk and trowel")) - setattr(cls, "orange peel", - PermissibleValue(text="orange peel")) - setattr(cls, "rosebud stomp", - PermissibleValue(text="rosebud stomp")) - setattr(cls, "Santa-Fe texture", - PermissibleValue(text="Santa-Fe texture")) - setattr(cls, "skip trowel", - PermissibleValue(text="skip trowel")) - setattr(cls, "stomp knockdown", - PermissibleValue(text="stomp knockdown")) + setattr(cls, "commonly of the building", + PermissibleValue(text="commonly of the building")) + setattr(cls, "site context (adjacent buildings, vegetation, terrain, streets)", + PermissibleValue(text="site context (adjacent buildings, vegetation, terrain, streets)")) + setattr(cls, "3D scans", + PermissibleValue(text="3D scans")) -class SrDepEnvEnum(EnumDefinitionImpl): +class DoorTypeWoodEnum(EnumDefinitionImpl): - Lacustine = PermissibleValue(text="Lacustine") - Fluvioldeltaic = PermissibleValue(text="Fluvioldeltaic") - Fluviomarine = PermissibleValue(text="Fluviomarine") - Marine = PermissibleValue(text="Marine") - other = PermissibleValue(text="other") + battened = PermissibleValue(text="battened") + flush = PermissibleValue(text="flush") + louvered = PermissibleValue(text="louvered") _defn = EnumDefinition( - name="SrDepEnvEnum", + name="DoorTypeWoodEnum", ) -class LightTypeEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "bettened and ledged", + PermissibleValue(text="bettened and ledged")) + setattr(cls, "ledged and braced", + PermissibleValue(text="ledged and braced")) + setattr(cls, "ledged and framed", + PermissibleValue(text="ledged and framed")) + setattr(cls, "ledged, braced and frame", + PermissibleValue(text="ledged, braced and frame")) + setattr(cls, "framed and paneled", + PermissibleValue(text="framed and paneled")) + setattr(cls, "glashed or sash", + PermissibleValue(text="glashed or sash")) + setattr(cls, "wire gauged", + PermissibleValue(text="wire gauged")) - none = PermissibleValue(text="none") +class FaoClassEnum(EnumDefinitionImpl): + + Acrisols = PermissibleValue(text="Acrisols") + Andosols = PermissibleValue(text="Andosols") + Arenosols = PermissibleValue(text="Arenosols") + Cambisols = PermissibleValue(text="Cambisols") + Chernozems = PermissibleValue(text="Chernozems") + Ferralsols = PermissibleValue(text="Ferralsols") + Fluvisols = PermissibleValue(text="Fluvisols") + Gleysols = PermissibleValue(text="Gleysols") + Greyzems = PermissibleValue(text="Greyzems") + Gypsisols = PermissibleValue(text="Gypsisols") + Histosols = PermissibleValue(text="Histosols") + Kastanozems = PermissibleValue(text="Kastanozems") + Lithosols = PermissibleValue(text="Lithosols") + Luvisols = PermissibleValue(text="Luvisols") + Nitosols = PermissibleValue(text="Nitosols") + Phaeozems = PermissibleValue(text="Phaeozems") + Planosols = PermissibleValue(text="Planosols") + Podzols = PermissibleValue(text="Podzols") + Podzoluvisols = PermissibleValue(text="Podzoluvisols") + Rankers = PermissibleValue(text="Rankers") + Regosols = PermissibleValue(text="Regosols") + Rendzinas = PermissibleValue(text="Rendzinas") + Solonchaks = PermissibleValue(text="Solonchaks") + Solonetz = PermissibleValue(text="Solonetz") + Vertisols = PermissibleValue(text="Vertisols") + Yermosols = PermissibleValue(text="Yermosols") _defn = EnumDefinition( - name="LightTypeEnum", + name="FaoClassEnum", + ) + +class SoilHorizonEnum(EnumDefinitionImpl): + + Permafrost = PermissibleValue(text="Permafrost") + + _defn = EnumDefinition( + name="SoilHorizonEnum", ) @classmethod def _addvals(cls): - setattr(cls, "natural light", - PermissibleValue(text="natural light")) - setattr(cls, "electric light", - PermissibleValue(text="electric light")) - setattr(cls, "desk lamp", - PermissibleValue(text="desk lamp")) - setattr(cls, "flourescent lights", - PermissibleValue(text="flourescent lights")) + setattr(cls, "O horizon", + PermissibleValue(text="O horizon")) + setattr(cls, "A horizon", + PermissibleValue(text="A horizon")) + setattr(cls, "E horizon", + PermissibleValue(text="E horizon")) + setattr(cls, "B horizon", + PermissibleValue(text="B horizon")) + setattr(cls, "C horizon", + PermissibleValue(text="C horizon")) + setattr(cls, "R layer", + PermissibleValue(text="R layer")) + setattr(cls, "M horizon", + PermissibleValue(text="M horizon")) -class RoomSampPosEnum(EnumDefinitionImpl): +class SpecificEnum(EnumDefinitionImpl): - center = PermissibleValue(text="center") + operation = PermissibleValue(text="operation") + construction = PermissibleValue(text="construction") + bid = PermissibleValue(text="bid") + design = PermissibleValue(text="design") + photos = PermissibleValue(text="photos") _defn = EnumDefinition( - name="RoomSampPosEnum", + name="SpecificEnum", ) @classmethod def _addvals(cls): - setattr(cls, "north corner", - PermissibleValue(text="north corner")) - setattr(cls, "south corner", - PermissibleValue(text="south corner")) - setattr(cls, "west corner", - PermissibleValue(text="west corner")) - setattr(cls, "east corner", - PermissibleValue(text="east corner")) - setattr(cls, "northeast corner", - PermissibleValue(text="northeast corner")) - setattr(cls, "northwest corner", - PermissibleValue(text="northwest corner")) - setattr(cls, "southeast corner", - PermissibleValue(text="southeast corner")) - setattr(cls, "southwest corner", - PermissibleValue(text="southwest corner")) + setattr(cls, "as built", + PermissibleValue(text="as built")) -class RelSampLocEnum(EnumDefinitionImpl): +class TidalStageEnum(EnumDefinitionImpl): _defn = EnumDefinition( - name="RelSampLocEnum", + name="TidalStageEnum", ) @classmethod def _addvals(cls): - setattr(cls, "edge of car", - PermissibleValue(text="edge of car")) - setattr(cls, "center of car", - PermissibleValue(text="center of car")) - setattr(cls, "under a seat", - PermissibleValue(text="under a seat")) + setattr(cls, "low tide", + PermissibleValue(text="low tide")) + setattr(cls, "ebb tide", + PermissibleValue(text="ebb tide")) + setattr(cls, "flood tide", + PermissibleValue(text="flood tide")) + setattr(cls, "high tide", + PermissibleValue(text="high tide")) -class ShadingDeviceCondEnum(EnumDefinitionImpl): +class IntWallCondEnum(EnumDefinitionImpl): - damaged = PermissibleValue(text="damaged") new = PermissibleValue(text="new") + damaged = PermissibleValue(text="damaged") rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="ShadingDeviceCondEnum", + name="IntWallCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) setattr(cls, "visible wear", PermissibleValue(text="visible wear")) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) + +class HeatCoolTypeEnum(EnumDefinitionImpl): + + _defn = EnumDefinition( + name="HeatCoolTypeEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "radiant system", + PermissibleValue(text="radiant system")) + setattr(cls, "heat pump", + PermissibleValue(text="heat pump")) + setattr(cls, "forced air system", + PermissibleValue(text="forced air system")) + setattr(cls, "steam forced heat", + PermissibleValue(text="steam forced heat")) + setattr(cls, "wood stove", + PermissibleValue(text="wood stove")) class DrainageClassEnum(EnumDefinitionImpl): @@ -7177,26 +7311,6 @@ def _addvals(cls): setattr(cls, "excessively drained", PermissibleValue(text="excessively drained")) -class SampWeatherEnum(EnumDefinitionImpl): - - cloudy = PermissibleValue(text="cloudy") - foggy = PermissibleValue(text="foggy") - hail = PermissibleValue(text="hail") - rain = PermissibleValue(text="rain") - snow = PermissibleValue(text="snow") - sleet = PermissibleValue(text="sleet") - sunny = PermissibleValue(text="sunny") - windy = PermissibleValue(text="windy") - - _defn = EnumDefinition( - name="SampWeatherEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "clear sky", - PermissibleValue(text="clear sky")) - class WallConstTypeEnum(EnumDefinitionImpl): _defn = EnumDefinition( @@ -7218,153 +7332,137 @@ def _addvals(cls): setattr(cls, "fire resistive", PermissibleValue(text="fire resistive")) -class ArchStrucEnum(EnumDefinitionImpl): +class SampWeatherEnum(EnumDefinitionImpl): - building = PermissibleValue(text="building") - shed = PermissibleValue(text="shed") - home = PermissibleValue(text="home") + cloudy = PermissibleValue(text="cloudy") + foggy = PermissibleValue(text="foggy") + hail = PermissibleValue(text="hail") + rain = PermissibleValue(text="rain") + snow = PermissibleValue(text="snow") + sleet = PermissibleValue(text="sleet") + sunny = PermissibleValue(text="sunny") + windy = PermissibleValue(text="windy") _defn = EnumDefinition( - name="ArchStrucEnum", + name="SampWeatherEnum", ) -class WindowVertPosEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "clear sky", + PermissibleValue(text="clear sky")) - bottom = PermissibleValue(text="bottom") - middle = PermissibleValue(text="middle") - top = PermissibleValue(text="top") - low = PermissibleValue(text="low") - high = PermissibleValue(text="high") +class TrainLineEnum(EnumDefinitionImpl): + + red = PermissibleValue(text="red") + green = PermissibleValue(text="green") + orange = PermissibleValue(text="orange") _defn = EnumDefinition( - name="WindowVertPosEnum", + name="TrainLineEnum", ) -class WindowMatEnum(EnumDefinitionImpl): +class CeilTypeEnum(EnumDefinitionImpl): - clad = PermissibleValue(text="clad") - fiberglass = PermissibleValue(text="fiberglass") - metal = PermissibleValue(text="metal") - vinyl = PermissibleValue(text="vinyl") - wood = PermissibleValue(text="wood") + cathedral = PermissibleValue(text="cathedral") + dropped = PermissibleValue(text="dropped") + concave = PermissibleValue(text="concave") + coffered = PermissibleValue(text="coffered") + cove = PermissibleValue(text="cove") + stretched = PermissibleValue(text="stretched") _defn = EnumDefinition( - name="WindowMatEnum", + name="CeilTypeEnum", ) -class TrainStopLocEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "barrel-shaped", + PermissibleValue(text="barrel-shaped")) - end = PermissibleValue(text="end") - mid = PermissibleValue(text="mid") - downtown = PermissibleValue(text="downtown") +class SampDisStageEnum(EnumDefinitionImpl): + + dissemination = PermissibleValue(text="dissemination") + infection = PermissibleValue(text="infection") + inoculation = PermissibleValue(text="inoculation") + penetration = PermissibleValue(text="penetration") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="TrainStopLocEnum", + name="SampDisStageEnum", ) -class SampCaptStatusEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "growth and reproduction", + PermissibleValue(text="growth and reproduction")) + +class SampMdEnum(EnumDefinitionImpl): + DF = PermissibleValue(text="DF") + RT = PermissibleValue(text="RT") + KB = PermissibleValue(text="KB") + MSL = PermissibleValue(text="MSL") other = PermissibleValue(text="other") _defn = EnumDefinition( - name="SampCaptStatusEnum", + name="SampMdEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "active surveillance in response to an outbreak", - PermissibleValue(text="active surveillance in response to an outbreak")) - setattr(cls, "active surveillance not initiated by an outbreak", - PermissibleValue(text="active surveillance not initiated by an outbreak")) - setattr(cls, "farm sample", - PermissibleValue(text="farm sample")) - setattr(cls, "market sample", - PermissibleValue(text="market sample")) - -class FloorFinishMatEnum(EnumDefinitionImpl): +class DoorCompTypeEnum(EnumDefinitionImpl): - tile = PermissibleValue(text="tile") - carpet = PermissibleValue(text="carpet") - rug = PermissibleValue(text="rug") - lineoleum = PermissibleValue(text="lineoleum") - stone = PermissibleValue(text="stone") - bamboo = PermissibleValue(text="bamboo") - cork = PermissibleValue(text="cork") - terrazo = PermissibleValue(text="terrazo") - concrete = PermissibleValue(text="concrete") - none = PermissibleValue(text="none") - sealed = PermissibleValue(text="sealed") - paint = PermissibleValue(text="paint") + revolving = PermissibleValue(text="revolving") + sliding = PermissibleValue(text="sliding") + telescopic = PermissibleValue(text="telescopic") _defn = EnumDefinition( - name="FloorFinishMatEnum", + name="DoorCompTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "wood strip or parquet", - PermissibleValue(text="wood strip or parquet")) - setattr(cls, "laminate wood", - PermissibleValue(text="laminate wood")) - setattr(cls, "vinyl composition tile", - PermissibleValue(text="vinyl composition tile")) - setattr(cls, "sheet vinyl", - PermissibleValue(text="sheet vinyl")) - setattr(cls, "clear finish", - PermissibleValue(text="clear finish")) - setattr(cls, "none or unfinished", - PermissibleValue(text="none or unfinished")) + setattr(cls, "metal covered", + PermissibleValue(text="metal covered")) -class PlantGrowthMedEnum(EnumDefinitionImpl): +class WindowLocEnum(EnumDefinitionImpl): - perlite = PermissibleValue(text="perlite") - pumice = PermissibleValue(text="pumice") - sand = PermissibleValue(text="sand") - soil = PermissibleValue(text="soil") - vermiculite = PermissibleValue(text="vermiculite") - water = PermissibleValue(text="water") + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") _defn = EnumDefinition( - name="PlantGrowthMedEnum", + name="WindowLocEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "other artificial liquid medium", - PermissibleValue(text="other artificial liquid medium")) - setattr(cls, "other artificial solid medium", - PermissibleValue(text="other artificial solid medium")) - setattr(cls, "peat moss", - PermissibleValue(text="peat moss")) - -class OxyStatSampEnum(EnumDefinitionImpl): +class DoorLocEnum(EnumDefinitionImpl): - aerobic = PermissibleValue(text="aerobic") - anaerobic = PermissibleValue(text="anaerobic") - other = PermissibleValue(text="other") + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") _defn = EnumDefinition( - name="OxyStatSampEnum", + name="DoorLocEnum", ) -class WindowCondEnum(EnumDefinitionImpl): +class WaterFeatTypeEnum(EnumDefinitionImpl): - damaged = PermissibleValue(text="damaged") - new = PermissibleValue(text="new") - rupture = PermissibleValue(text="rupture") + fountain = PermissibleValue(text="fountain") + pool = PermissibleValue(text="pool") + stream = PermissibleValue(text="stream") + waterfall = PermissibleValue(text="waterfall") _defn = EnumDefinition( - name="WindowCondEnum", + name="WaterFeatTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) + setattr(cls, "standing feature", + PermissibleValue(text="standing feature")) -class WallTextureEnum(EnumDefinitionImpl): +class CeilTextureEnum(EnumDefinitionImpl): knockdown = PermissibleValue(text="knockdown") popcorn = PermissibleValue(text="popcorn") @@ -7372,7 +7470,7 @@ class WallTextureEnum(EnumDefinitionImpl): swirl = PermissibleValue(text="swirl") _defn = EnumDefinition( - name="WallTextureEnum", + name="CeilTextureEnum", ) @classmethod @@ -7381,8 +7479,6 @@ def _addvals(cls): PermissibleValue(text="crows feet")) setattr(cls, "crows-foot stomp", PermissibleValue(text="crows-foot stomp")) - setattr(cls, "", - PermissibleValue(text="")) setattr(cls, "double skip", PermissibleValue(text="double skip")) setattr(cls, "hawk and trowel", @@ -7398,29 +7494,53 @@ def _addvals(cls): setattr(cls, "stomp knockdown", PermissibleValue(text="stomp knockdown")) -class ProfilePositionEnum(EnumDefinitionImpl): +class GrowthHabitEnum(EnumDefinitionImpl): - summit = PermissibleValue(text="summit") - shoulder = PermissibleValue(text="shoulder") - backslope = PermissibleValue(text="backslope") - footslope = PermissibleValue(text="footslope") - toeslope = PermissibleValue(text="toeslope") + erect = PermissibleValue(text="erect") + spreading = PermissibleValue(text="spreading") + prostrate = PermissibleValue(text="prostrate") _defn = EnumDefinition( - name="ProfilePositionEnum", + name="GrowthHabitEnum", ) -class WallLocEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "semi-erect", + PermissibleValue(text="semi-erect")) - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") +class ShadingDeviceTypeEnum(EnumDefinitionImpl): + + tree = PermissibleValue(text="tree") + trellis = PermissibleValue(text="trellis") _defn = EnumDefinition( - name="WallLocEnum", + name="ShadingDeviceTypeEnum", ) + @classmethod + def _addvals(cls): + setattr(cls, "bahama shutters", + PermissibleValue(text="bahama shutters")) + setattr(cls, "exterior roll blind", + PermissibleValue(text="exterior roll blind")) + setattr(cls, "gambrel awning", + PermissibleValue(text="gambrel awning")) + setattr(cls, "hood awning", + PermissibleValue(text="hood awning")) + setattr(cls, "porchroller awning", + PermissibleValue(text="porchroller awning")) + setattr(cls, "sarasota shutters", + PermissibleValue(text="sarasota shutters")) + setattr(cls, "slatted aluminum", + PermissibleValue(text="slatted aluminum")) + setattr(cls, "solid aluminum awning", + PermissibleValue(text="solid aluminum awning")) + setattr(cls, "sun screen", + PermissibleValue(text="sun screen")) + setattr(cls, "venetian awning", + PermissibleValue(text="venetian awning")) + class RoomTypeEnum(EnumDefinitionImpl): attic = PermissibleValue(text="attic") @@ -7464,199 +7584,177 @@ def _addvals(cls): setattr(cls, "data center", PermissibleValue(text="data center")) -class DoorCondEnum(EnumDefinitionImpl): +class LightTypeEnum(EnumDefinitionImpl): - damaged = PermissibleValue(text="damaged") - new = PermissibleValue(text="new") - rupture = PermissibleValue(text="rupture") + none = PermissibleValue(text="none") _defn = EnumDefinition( - name="DoorCondEnum", + name="LightTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) + setattr(cls, "natural light", + PermissibleValue(text="natural light")) + setattr(cls, "electric light", + PermissibleValue(text="electric light")) + setattr(cls, "desk lamp", + PermissibleValue(text="desk lamp")) + setattr(cls, "flourescent lights", + PermissibleValue(text="flourescent lights")) -class OrganismCountEnum(EnumDefinitionImpl): +class BuildDocsEnum(EnumDefinitionImpl): - ATP = PermissibleValue(text="ATP") - MPN = PermissibleValue(text="MPN") - other = PermissibleValue(text="other") + schedule = PermissibleValue(text="schedule") + sections = PermissibleValue(text="sections") + submittals = PermissibleValue(text="submittals") + windows = PermissibleValue(text="windows") _defn = EnumDefinition( - name="OrganismCountEnum", + name="BuildDocsEnum", ) -class HostSexEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "building information model", + PermissibleValue(text="building information model")) + setattr(cls, "commissioning report", + PermissibleValue(text="commissioning report")) + setattr(cls, "complaint logs", + PermissibleValue(text="complaint logs")) + setattr(cls, "contract administration", + PermissibleValue(text="contract administration")) + setattr(cls, "cost estimate", + PermissibleValue(text="cost estimate")) + setattr(cls, "janitorial schedules or logs", + PermissibleValue(text="janitorial schedules or logs")) + setattr(cls, "maintenance plans", + PermissibleValue(text="maintenance plans")) + setattr(cls, "shop drawings", + PermissibleValue(text="shop drawings")) + setattr(cls, "ventilation system", + PermissibleValue(text="ventilation system")) - female = PermissibleValue(text="female") - hermaphrodite = PermissibleValue(text="hermaphrodite") - male = PermissibleValue(text="male") - neuter = PermissibleValue(text="neuter") +class WindowVertPosEnum(EnumDefinitionImpl): + + bottom = PermissibleValue(text="bottom") + middle = PermissibleValue(text="middle") + top = PermissibleValue(text="top") + low = PermissibleValue(text="low") + high = PermissibleValue(text="high") _defn = EnumDefinition( - name="HostSexEnum", + name="WindowVertPosEnum", ) -class IndoorSurfEnum(EnumDefinitionImpl): +class SampCollectPointEnum(EnumDefinitionImpl): - cabinet = PermissibleValue(text="cabinet") - ceiling = PermissibleValue(text="ceiling") - door = PermissibleValue(text="door") - shelving = PermissibleValue(text="shelving") - window = PermissibleValue(text="window") - wall = PermissibleValue(text="wall") + well = PermissibleValue(text="well") + wellhead = PermissibleValue(text="wellhead") + separator = PermissibleValue(text="separator") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="IndoorSurfEnum", + name="SampCollectPointEnum", ) @classmethod def _addvals(cls): - setattr(cls, "counter top", - PermissibleValue(text="counter top")) - setattr(cls, "vent cover", - PermissibleValue(text="vent cover")) + setattr(cls, "test well", + PermissibleValue(text="test well")) + setattr(cls, "drilling rig", + PermissibleValue(text="drilling rig")) + setattr(cls, "storage tank", + PermissibleValue(text="storage tank")) -class SoilHorizonEnum(EnumDefinitionImpl): +class TrainStopLocEnum(EnumDefinitionImpl): - Permafrost = PermissibleValue(text="Permafrost") + end = PermissibleValue(text="end") + mid = PermissibleValue(text="mid") + downtown = PermissibleValue(text="downtown") _defn = EnumDefinition( - name="SoilHorizonEnum", + name="TrainStopLocEnum", + ) + +class DoorCondEnum(EnumDefinitionImpl): + + damaged = PermissibleValue(text="damaged") + new = PermissibleValue(text="new") + rupture = PermissibleValue(text="rupture") + + _defn = EnumDefinition( + name="DoorCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "O horizon", - PermissibleValue(text="O horizon")) - setattr(cls, "A horizon", - PermissibleValue(text="A horizon")) - setattr(cls, "E horizon", - PermissibleValue(text="E horizon")) - setattr(cls, "B horizon", - PermissibleValue(text="B horizon")) - setattr(cls, "C horizon", - PermissibleValue(text="C horizon")) - setattr(cls, "R layer", - PermissibleValue(text="R layer")) - setattr(cls, "M horizon", - PermissibleValue(text="M horizon")) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) -class ExtWindowOrientEnum(EnumDefinitionImpl): +class RoomCondtEnum(EnumDefinitionImpl): - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") - northeast = PermissibleValue(text="northeast") - southeast = PermissibleValue(text="southeast") - southwest = PermissibleValue(text="southwest") - northwest = PermissibleValue(text="northwest") + new = PermissibleValue(text="new") + damaged = PermissibleValue(text="damaged") + rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="ExtWindowOrientEnum", + name="RoomCondtEnum", ) -class CurLandUseEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) + setattr(cls, "visible signs of mold/mildew", + PermissibleValue(text="visible signs of mold/mildew")) - badlands = PermissibleValue(text="badlands") - cities = PermissibleValue(text="cities") - conifers = PermissibleValue(text="conifers") - farmstead = PermissibleValue(text="farmstead") - gravel = PermissibleValue(text="gravel") - hardwoods = PermissibleValue(text="hardwoods") - hayland = PermissibleValue(text="hayland") - marshlands = PermissibleValue(text="marshlands") - meadows = PermissibleValue(text="meadows") - mudflats = PermissibleValue(text="mudflats") - pastureland = PermissibleValue(text="pastureland") - rainforest = PermissibleValue(text="rainforest") - rangeland = PermissibleValue(text="rangeland") - rock = PermissibleValue(text="rock") - sand = PermissibleValue(text="sand") - swamp = PermissibleValue(text="swamp") - tropical = PermissibleValue(text="tropical") - tundra = PermissibleValue(text="tundra") +class DoorTypeMetalEnum(EnumDefinitionImpl): + + collapsible = PermissibleValue(text="collapsible") + hollow = PermissibleValue(text="hollow") _defn = EnumDefinition( - name="CurLandUseEnum", + name="DoorTypeMetalEnum", ) @classmethod def _addvals(cls): - setattr(cls, "crop trees", - PermissibleValue(text="crop trees")) - setattr(cls, "horticultural plants", - PermissibleValue(text="horticultural plants")) - setattr(cls, "industrial areas", - PermissibleValue(text="industrial areas")) - setattr(cls, "intermixed hardwood and conifers", - PermissibleValue(text="intermixed hardwood and conifers")) - setattr(cls, "mines/quarries", - PermissibleValue(text="mines/quarries")) - setattr(cls, "oil waste areas", - PermissibleValue(text="oil waste areas")) - setattr(cls, "permanent snow or ice", - PermissibleValue(text="permanent snow or ice")) - setattr(cls, "roads/railroads", - PermissibleValue(text="roads/railroads")) - setattr(cls, "row crops", - PermissibleValue(text="row crops")) - setattr(cls, "saline seeps", - PermissibleValue(text="saline seeps")) - setattr(cls, "salt flats", - PermissibleValue(text="salt flats")) - setattr(cls, "shrub crops", - PermissibleValue(text="shrub crops")) - setattr(cls, "shrub land", - PermissibleValue(text="shrub land")) - setattr(cls, "small grains", - PermissibleValue(text="small grains")) - setattr(cls, "successional shrub land", - PermissibleValue(text="successional shrub land")) - setattr(cls, "vegetable crops", - PermissibleValue(text="vegetable crops")) - setattr(cls, "vine crops", - PermissibleValue(text="vine crops")) + setattr(cls, "corrugated steel", + PermissibleValue(text="corrugated steel")) + setattr(cls, "rolling shutters", + PermissibleValue(text="rolling shutters")) + setattr(cls, "steel plate", + PermissibleValue(text="steel plate")) -class FaoClassEnum(EnumDefinitionImpl): +class TillageEnum(EnumDefinitionImpl): - Acrisols = PermissibleValue(text="Acrisols") - Andosols = PermissibleValue(text="Andosols") - Arenosols = PermissibleValue(text="Arenosols") - Cambisols = PermissibleValue(text="Cambisols") - Chernozems = PermissibleValue(text="Chernozems") - Ferralsols = PermissibleValue(text="Ferralsols") - Fluvisols = PermissibleValue(text="Fluvisols") - Gleysols = PermissibleValue(text="Gleysols") - Greyzems = PermissibleValue(text="Greyzems") - Gypsisols = PermissibleValue(text="Gypsisols") - Histosols = PermissibleValue(text="Histosols") - Kastanozems = PermissibleValue(text="Kastanozems") - Lithosols = PermissibleValue(text="Lithosols") - Luvisols = PermissibleValue(text="Luvisols") - Nitosols = PermissibleValue(text="Nitosols") - Phaeozems = PermissibleValue(text="Phaeozems") - Planosols = PermissibleValue(text="Planosols") - Podzols = PermissibleValue(text="Podzols") - Podzoluvisols = PermissibleValue(text="Podzoluvisols") - Rankers = PermissibleValue(text="Rankers") - Regosols = PermissibleValue(text="Regosols") - Rendzinas = PermissibleValue(text="Rendzinas") - Solonchaks = PermissibleValue(text="Solonchaks") - Solonetz = PermissibleValue(text="Solonetz") - Vertisols = PermissibleValue(text="Vertisols") - Yermosols = PermissibleValue(text="Yermosols") + drill = PermissibleValue(text="drill") + chisel = PermissibleValue(text="chisel") + tined = PermissibleValue(text="tined") + mouldboard = PermissibleValue(text="mouldboard") _defn = EnumDefinition( - name="FaoClassEnum", + name="TillageEnum", ) + @classmethod + def _addvals(cls): + setattr(cls, "cutting disc", + PermissibleValue(text="cutting disc")) + setattr(cls, "ridge till", + PermissibleValue(text="ridge till")) + setattr(cls, "strip tillage", + PermissibleValue(text="strip tillage")) + setattr(cls, "zonal tillage", + PermissibleValue(text="zonal tillage")) + setattr(cls, "disc plough", + PermissibleValue(text="disc plough")) + class SrLithologyEnum(EnumDefinitionImpl): Clastic = PermissibleValue(text="Clastic") @@ -7669,201 +7767,125 @@ class SrLithologyEnum(EnumDefinitionImpl): name="SrLithologyEnum", ) -class DoorMatEnum(EnumDefinitionImpl): +class DoorMoveEnum(EnumDefinitionImpl): - aluminum = PermissibleValue(text="aluminum") - fiberboard = PermissibleValue(text="fiberboard") - fiberglass = PermissibleValue(text="fiberglass") - metal = PermissibleValue(text="metal") - vinyl = PermissibleValue(text="vinyl") - wood = PermissibleValue(text="wood") + collapsible = PermissibleValue(text="collapsible") + folding = PermissibleValue(text="folding") + revolving = PermissibleValue(text="revolving") + sliding = PermissibleValue(text="sliding") + swinging = PermissibleValue(text="swinging") _defn = EnumDefinition( - name="DoorMatEnum", + name="DoorMoveEnum", ) @classmethod def _addvals(cls): - setattr(cls, "cellular PVC", - PermissibleValue(text="cellular PVC")) - setattr(cls, "engineered plastic", - PermissibleValue(text="engineered plastic")) - setattr(cls, "thermoplastic alloy", - PermissibleValue(text="thermoplastic alloy")) - setattr(cls, "wood/plastic composite", - PermissibleValue(text="wood/plastic composite")) + setattr(cls, "rolling shutter", + PermissibleValue(text="rolling shutter")) -class CeilFinishMatEnum(EnumDefinitionImpl): +class WindowCoverEnum(EnumDefinitionImpl): - drywall = PermissibleValue(text="drywall") - tiles = PermissibleValue(text="tiles") - PVC = PermissibleValue(text="PVC") - plasterboard = PermissibleValue(text="plasterboard") - metal = PermissibleValue(text="metal") - fiberglass = PermissibleValue(text="fiberglass") - stucco = PermissibleValue(text="stucco") - wood = PermissibleValue(text="wood") + blinds = PermissibleValue(text="blinds") + curtains = PermissibleValue(text="curtains") + none = PermissibleValue(text="none") _defn = EnumDefinition( - name="CeilFinishMatEnum", + name="WindowCoverEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "mineral fibre", - PermissibleValue(text="mineral fibre")) - setattr(cls, "mineral wool/calcium silicate", - PermissibleValue(text="mineral wool/calcium silicate")) - -class FurnitureEnum(EnumDefinitionImpl): +class LithologyEnum(EnumDefinitionImpl): - cabinet = PermissibleValue(text="cabinet") - chair = PermissibleValue(text="chair") - desks = PermissibleValue(text="desks") + Basement = PermissibleValue(text="Basement") + Chalk = PermissibleValue(text="Chalk") + Chert = PermissibleValue(text="Chert") + Coal = PermissibleValue(text="Coal") + Conglomerate = PermissibleValue(text="Conglomerate") + Diatomite = PermissibleValue(text="Diatomite") + Dolomite = PermissibleValue(text="Dolomite") + Limestone = PermissibleValue(text="Limestone") + Sandstone = PermissibleValue(text="Sandstone") + Shale = PermissibleValue(text="Shale") + Siltstone = PermissibleValue(text="Siltstone") + Volcanic = PermissibleValue(text="Volcanic") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="FurnitureEnum", + name="LithologyEnum", ) -class GrowthHabitEnum(EnumDefinitionImpl): +class SampFloorEnum(EnumDefinitionImpl): - erect = PermissibleValue(text="erect") - spreading = PermissibleValue(text="spreading") - prostrate = PermissibleValue(text="prostrate") + basement = PermissibleValue(text="basement") + lobby = PermissibleValue(text="lobby") _defn = EnumDefinition( - name="GrowthHabitEnum", + name="SampFloorEnum", ) @classmethod def _addvals(cls): - setattr(cls, "semi-erect", - PermissibleValue(text="semi-erect")) - -class DoorTypeEnum(EnumDefinitionImpl): - - composite = PermissibleValue(text="composite") - metal = PermissibleValue(text="metal") - wooden = PermissibleValue(text="wooden") - - _defn = EnumDefinition( - name="DoorTypeEnum", - ) + setattr(cls, "1st floor", + PermissibleValue(text="1st floor")) + setattr(cls, "2nd floor", + PermissibleValue(text="2nd floor")) -class GenderRestroomEnum(EnumDefinitionImpl): +class DoorDirectEnum(EnumDefinitionImpl): - female = PermissibleValue(text="female") - male = PermissibleValue(text="male") - unisex = PermissibleValue(text="unisex") + inward = PermissibleValue(text="inward") + outward = PermissibleValue(text="outward") + sideways = PermissibleValue(text="sideways") _defn = EnumDefinition( - name="GenderRestroomEnum", + name="DoorDirectEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "all gender", - PermissibleValue(text="all gender")) - setattr(cls, "gender neurtral", - PermissibleValue(text="gender neurtral")) - setattr(cls, "male and female", - PermissibleValue(text="male and female")) - -class DoorCompTypeEnum(EnumDefinitionImpl): +class HeatDelivLocEnum(EnumDefinitionImpl): - revolving = PermissibleValue(text="revolving") - sliding = PermissibleValue(text="sliding") - telescopic = PermissibleValue(text="telescopic") + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") _defn = EnumDefinition( - name="DoorCompTypeEnum", + name="HeatDelivLocEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "metal covered", - PermissibleValue(text="metal covered")) - -class FreqCleanEnum(EnumDefinitionImpl): +class SrDepEnvEnum(EnumDefinitionImpl): - Daily = PermissibleValue(text="Daily") - Weekly = PermissibleValue(text="Weekly") - Monthly = PermissibleValue(text="Monthly") - Quarterly = PermissibleValue(text="Quarterly") - Annually = PermissibleValue(text="Annually") + Lacustine = PermissibleValue(text="Lacustine") + Fluvioldeltaic = PermissibleValue(text="Fluvioldeltaic") + Fluviomarine = PermissibleValue(text="Fluviomarine") + Marine = PermissibleValue(text="Marine") other = PermissibleValue(text="other") _defn = EnumDefinition( - name="FreqCleanEnum", + name="SrDepEnvEnum", ) -class SampCollectPointEnum(EnumDefinitionImpl): +class SrGeolAgeEnum(EnumDefinitionImpl): - well = PermissibleValue(text="well") - wellhead = PermissibleValue(text="wellhead") - separator = PermissibleValue(text="separator") + Archean = PermissibleValue(text="Archean") + Cambrian = PermissibleValue(text="Cambrian") + Carboniferous = PermissibleValue(text="Carboniferous") + Cenozoic = PermissibleValue(text="Cenozoic") + Cretaceous = PermissibleValue(text="Cretaceous") + Devonian = PermissibleValue(text="Devonian") + Jurassic = PermissibleValue(text="Jurassic") + Mesozoic = PermissibleValue(text="Mesozoic") + Neogene = PermissibleValue(text="Neogene") + Ordovician = PermissibleValue(text="Ordovician") + Paleogene = PermissibleValue(text="Paleogene") + Paleozoic = PermissibleValue(text="Paleozoic") + Permian = PermissibleValue(text="Permian") + Precambrian = PermissibleValue(text="Precambrian") + Proterozoic = PermissibleValue(text="Proterozoic") + Silurian = PermissibleValue(text="Silurian") + Triassic = PermissibleValue(text="Triassic") other = PermissibleValue(text="other") _defn = EnumDefinition( - name="SampCollectPointEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "test well", - PermissibleValue(text="test well")) - setattr(cls, "drilling rig", - PermissibleValue(text="drilling rig")) - setattr(cls, "storage tank", - PermissibleValue(text="storage tank")) - -class BuildingSettingEnum(EnumDefinitionImpl): - - urban = PermissibleValue(text="urban") - suburban = PermissibleValue(text="suburban") - exurban = PermissibleValue(text="exurban") - rural = PermissibleValue(text="rural") - - _defn = EnumDefinition( - name="BuildingSettingEnum", - ) - -class HandidnessEnum(EnumDefinitionImpl): - - ambidexterity = PermissibleValue(text="ambidexterity") - - _defn = EnumDefinition( - name="HandidnessEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "left handedness", - PermissibleValue(text="left handedness")) - setattr(cls, "mixed-handedness", - PermissibleValue(text="mixed-handedness")) - setattr(cls, "right handedness", - PermissibleValue(text="right handedness")) - -class WindowHorizPosEnum(EnumDefinitionImpl): - - left = PermissibleValue(text="left") - middle = PermissibleValue(text="middle") - right = PermissibleValue(text="right") - - _defn = EnumDefinition( - name="WindowHorizPosEnum", - ) - -class DoorLocEnum(EnumDefinitionImpl): - - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") - - _defn = EnumDefinition( - name="DoorLocEnum", + name="SrGeolAgeEnum", ) class ExtWallOrientEnum(EnumDefinitionImpl): @@ -7881,58 +7903,6 @@ class ExtWallOrientEnum(EnumDefinitionImpl): name="ExtWallOrientEnum", ) -class WeekdayEnum(EnumDefinitionImpl): - - Monday = PermissibleValue(text="Monday") - Tuesday = PermissibleValue(text="Tuesday") - Wednesday = PermissibleValue(text="Wednesday") - Thursday = PermissibleValue(text="Thursday") - Friday = PermissibleValue(text="Friday") - Saturday = PermissibleValue(text="Saturday") - Sunday = PermissibleValue(text="Sunday") - - _defn = EnumDefinition( - name="WeekdayEnum", - ) - -class LithologyEnum(EnumDefinitionImpl): - - Basement = PermissibleValue(text="Basement") - Chalk = PermissibleValue(text="Chalk") - Chert = PermissibleValue(text="Chert") - Coal = PermissibleValue(text="Coal") - Conglomerate = PermissibleValue(text="Conglomerate") - Diatomite = PermissibleValue(text="Diatomite") - Dolomite = PermissibleValue(text="Dolomite") - Limestone = PermissibleValue(text="Limestone") - Sandstone = PermissibleValue(text="Sandstone") - Shale = PermissibleValue(text="Shale") - Siltstone = PermissibleValue(text="Siltstone") - Volcanic = PermissibleValue(text="Volcanic") - other = PermissibleValue(text="other") - - _defn = EnumDefinition( - name="LithologyEnum", - ) - -class CeilTypeEnum(EnumDefinitionImpl): - - cathedral = PermissibleValue(text="cathedral") - dropped = PermissibleValue(text="dropped") - concave = PermissibleValue(text="concave") - coffered = PermissibleValue(text="coffered") - cove = PermissibleValue(text="cove") - stretched = PermissibleValue(text="stretched") - - _defn = EnumDefinition( - name="CeilTypeEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "barrel-shaped", - PermissibleValue(text="barrel-shaped")) - class FloorWaterMoldEnum(EnumDefinitionImpl): condensation = PermissibleValue(text="condensation") @@ -7960,406 +7930,287 @@ def _addvals(cls): setattr(cls, "bulging walls", PermissibleValue(text="bulging walls")) -class PlantSexEnum(EnumDefinitionImpl): +class WindowCondEnum(EnumDefinitionImpl): - Androdioecious = PermissibleValue(text="Androdioecious") - Androecious = PermissibleValue(text="Androecious") - Androgynous = PermissibleValue(text="Androgynous") - Androgynomonoecious = PermissibleValue(text="Androgynomonoecious") - Andromonoecious = PermissibleValue(text="Andromonoecious") - Bisexual = PermissibleValue(text="Bisexual") - Dichogamous = PermissibleValue(text="Dichogamous") - Diclinous = PermissibleValue(text="Diclinous") - Dioecious = PermissibleValue(text="Dioecious") - Gynodioecious = PermissibleValue(text="Gynodioecious") - Gynoecious = PermissibleValue(text="Gynoecious") - Gynomonoecious = PermissibleValue(text="Gynomonoecious") - Hermaphroditic = PermissibleValue(text="Hermaphroditic") - Imperfect = PermissibleValue(text="Imperfect") - Monoclinous = PermissibleValue(text="Monoclinous") - Monoecious = PermissibleValue(text="Monoecious") - Perfect = PermissibleValue(text="Perfect") - Polygamodioecious = PermissibleValue(text="Polygamodioecious") - Polygamomonoecious = PermissibleValue(text="Polygamomonoecious") - Polygamous = PermissibleValue(text="Polygamous") - Protandrous = PermissibleValue(text="Protandrous") - Protogynous = PermissibleValue(text="Protogynous") - Subandroecious = PermissibleValue(text="Subandroecious") - Subdioecious = PermissibleValue(text="Subdioecious") - Subgynoecious = PermissibleValue(text="Subgynoecious") - Synoecious = PermissibleValue(text="Synoecious") - Trimonoecious = PermissibleValue(text="Trimonoecious") - Trioecious = PermissibleValue(text="Trioecious") - Unisexual = PermissibleValue(text="Unisexual") + damaged = PermissibleValue(text="damaged") + new = PermissibleValue(text="new") + rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="PlantSexEnum", + name="WindowCondEnum", ) -class IntWallCondEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) + +class ShadingDeviceCondEnum(EnumDefinitionImpl): - new = PermissibleValue(text="new") damaged = PermissibleValue(text="damaged") + new = PermissibleValue(text="new") rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="IntWallCondEnum", + name="ShadingDeviceCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) setattr(cls, "needs repair", PermissibleValue(text="needs repair")) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) -class SurfMaterialEnum(EnumDefinitionImpl): +class WallLocEnum(EnumDefinitionImpl): - adobe = PermissibleValue(text="adobe") - carpet = PermissibleValue(text="carpet") - concrete = PermissibleValue(text="concrete") - glass = PermissibleValue(text="glass") - metal = PermissibleValue(text="metal") - paint = PermissibleValue(text="paint") - plastic = PermissibleValue(text="plastic") - stone = PermissibleValue(text="stone") - stucco = PermissibleValue(text="stucco") - tile = PermissibleValue(text="tile") - vinyl = PermissibleValue(text="vinyl") - wood = PermissibleValue(text="wood") - - _defn = EnumDefinition( - name="SurfMaterialEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "cinder blocks", - PermissibleValue(text="cinder blocks")) - setattr(cls, "hay bales", - PermissibleValue(text="hay bales")) - setattr(cls, "stainless steel", - PermissibleValue(text="stainless steel")) - -class IndoorSpaceEnum(EnumDefinitionImpl): - - bedroom = PermissibleValue(text="bedroom") - office = PermissibleValue(text="office") - bathroom = PermissibleValue(text="bathroom") - foyer = PermissibleValue(text="foyer") - kitchen = PermissibleValue(text="kitchen") - hallway = PermissibleValue(text="hallway") - elevator = PermissibleValue(text="elevator") - - _defn = EnumDefinition( - name="IndoorSpaceEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "locker room", - PermissibleValue(text="locker room")) - -class SeasonUseEnum(EnumDefinitionImpl): - - Spring = PermissibleValue(text="Spring") - Summer = PermissibleValue(text="Summer") - Fall = PermissibleValue(text="Fall") - Winter = PermissibleValue(text="Winter") - - _defn = EnumDefinition( - name="SeasonUseEnum", - ) - -class TidalStageEnum(EnumDefinitionImpl): - - _defn = EnumDefinition( - name="TidalStageEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "low tide", - PermissibleValue(text="low tide")) - setattr(cls, "ebb tide", - PermissibleValue(text="ebb tide")) - setattr(cls, "flood tide", - PermissibleValue(text="flood tide")) - setattr(cls, "high tide", - PermissibleValue(text="high tide")) - -class SpecificEnum(EnumDefinitionImpl): - - operation = PermissibleValue(text="operation") - construction = PermissibleValue(text="construction") - bid = PermissibleValue(text="bid") - design = PermissibleValue(text="design") - photos = PermissibleValue(text="photos") - - _defn = EnumDefinition( - name="SpecificEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "as built", - PermissibleValue(text="as built")) - -class VisMediaEnum(EnumDefinitionImpl): - - photos = PermissibleValue(text="photos") - videos = PermissibleValue(text="videos") - interiors = PermissibleValue(text="interiors") - equipment = PermissibleValue(text="equipment") + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") _defn = EnumDefinition( - name="VisMediaEnum", + name="WallLocEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "commonly of the building", - PermissibleValue(text="commonly of the building")) - setattr(cls, "site context (adjacent buildings, vegetation, terrain, streets)", - PermissibleValue(text="site context (adjacent buildings, vegetation, terrain, streets)")) - setattr(cls, "3D scans", - PermissibleValue(text="3D scans")) - -class WallFinishMatEnum(EnumDefinitionImpl): +class DoorMatEnum(EnumDefinitionImpl): - plaster = PermissibleValue(text="plaster") - tile = PermissibleValue(text="tile") - terrazzo = PermissibleValue(text="terrazzo") - wood = PermissibleValue(text="wood") + aluminum = PermissibleValue(text="aluminum") + fiberboard = PermissibleValue(text="fiberboard") + fiberglass = PermissibleValue(text="fiberglass") metal = PermissibleValue(text="metal") - masonry = PermissibleValue(text="masonry") - - _defn = EnumDefinition( - name="WallFinishMatEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "gypsum plaster", - PermissibleValue(text="gypsum plaster")) - setattr(cls, "veneer plaster", - PermissibleValue(text="veneer plaster")) - setattr(cls, "gypsum board", - PermissibleValue(text="gypsum board")) - setattr(cls, "stone facing", - PermissibleValue(text="stone facing")) - setattr(cls, "acoustical treatment", - PermissibleValue(text="acoustical treatment")) - -class ShadingDeviceTypeEnum(EnumDefinitionImpl): - - tree = PermissibleValue(text="tree") - trellis = PermissibleValue(text="trellis") + vinyl = PermissibleValue(text="vinyl") + wood = PermissibleValue(text="wood") _defn = EnumDefinition( - name="ShadingDeviceTypeEnum", + name="DoorMatEnum", ) @classmethod def _addvals(cls): - setattr(cls, "bahama shutters", - PermissibleValue(text="bahama shutters")) - setattr(cls, "exterior roll blind", - PermissibleValue(text="exterior roll blind")) - setattr(cls, "gambrel awning", - PermissibleValue(text="gambrel awning")) - setattr(cls, "hood awning", - PermissibleValue(text="hood awning")) - setattr(cls, "porchroller awning", - PermissibleValue(text="porchroller awning")) - setattr(cls, "sarasota shutters", - PermissibleValue(text="sarasota shutters")) - setattr(cls, "slatted aluminum", - PermissibleValue(text="slatted aluminum")) - setattr(cls, "solid aluminum awning", - PermissibleValue(text="solid aluminum awning")) - setattr(cls, "sun screen", - PermissibleValue(text="sun screen")) - setattr(cls, "venetian awning", - PermissibleValue(text="venetian awning")) - -class SedimentTypeEnum(EnumDefinitionImpl): - - biogenous = PermissibleValue(text="biogenous") - cosmogenous = PermissibleValue(text="cosmogenous") - hydrogenous = PermissibleValue(text="hydrogenous") - lithogenous = PermissibleValue(text="lithogenous") - - _defn = EnumDefinition( - name="SedimentTypeEnum", - ) - -class WindowLocEnum(EnumDefinitionImpl): - - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") - - _defn = EnumDefinition( - name="WindowLocEnum", - ) + setattr(cls, "cellular PVC", + PermissibleValue(text="cellular PVC")) + setattr(cls, "engineered plastic", + PermissibleValue(text="engineered plastic")) + setattr(cls, "thermoplastic alloy", + PermissibleValue(text="thermoplastic alloy")) + setattr(cls, "wood/plastic composite", + PermissibleValue(text="wood/plastic composite")) -class HeatDelivLocEnum(EnumDefinitionImpl): +class PlantSexEnum(EnumDefinitionImpl): - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") + Androdioecious = PermissibleValue(text="Androdioecious") + Androecious = PermissibleValue(text="Androecious") + Androgynous = PermissibleValue(text="Androgynous") + Androgynomonoecious = PermissibleValue(text="Androgynomonoecious") + Andromonoecious = PermissibleValue(text="Andromonoecious") + Bisexual = PermissibleValue(text="Bisexual") + Dichogamous = PermissibleValue(text="Dichogamous") + Diclinous = PermissibleValue(text="Diclinous") + Dioecious = PermissibleValue(text="Dioecious") + Gynodioecious = PermissibleValue(text="Gynodioecious") + Gynoecious = PermissibleValue(text="Gynoecious") + Gynomonoecious = PermissibleValue(text="Gynomonoecious") + Hermaphroditic = PermissibleValue(text="Hermaphroditic") + Imperfect = PermissibleValue(text="Imperfect") + Monoclinous = PermissibleValue(text="Monoclinous") + Monoecious = PermissibleValue(text="Monoecious") + Perfect = PermissibleValue(text="Perfect") + Polygamodioecious = PermissibleValue(text="Polygamodioecious") + Polygamomonoecious = PermissibleValue(text="Polygamomonoecious") + Polygamous = PermissibleValue(text="Polygamous") + Protandrous = PermissibleValue(text="Protandrous") + Protogynous = PermissibleValue(text="Protogynous") + Subandroecious = PermissibleValue(text="Subandroecious") + Subdioecious = PermissibleValue(text="Subdioecious") + Subgynoecious = PermissibleValue(text="Subgynoecious") + Synoecious = PermissibleValue(text="Synoecious") + Trimonoecious = PermissibleValue(text="Trimonoecious") + Trioecious = PermissibleValue(text="Trioecious") + Unisexual = PermissibleValue(text="Unisexual") _defn = EnumDefinition( - name="HeatDelivLocEnum", + name="PlantSexEnum", ) -class TrainStatLocEnum(EnumDefinitionImpl): +class WallTextureEnum(EnumDefinitionImpl): - riverside = PermissibleValue(text="riverside") + knockdown = PermissibleValue(text="knockdown") + popcorn = PermissibleValue(text="popcorn") + smooth = PermissibleValue(text="smooth") + swirl = PermissibleValue(text="swirl") _defn = EnumDefinition( - name="TrainStatLocEnum", + name="WallTextureEnum", ) @classmethod def _addvals(cls): - setattr(cls, "south station above ground", - PermissibleValue(text="south station above ground")) - setattr(cls, "south station underground", - PermissibleValue(text="south station underground")) - setattr(cls, "south station amtrak", - PermissibleValue(text="south station amtrak")) - setattr(cls, "forest hills", - PermissibleValue(text="forest hills")) + setattr(cls, "crows feet", + PermissibleValue(text="crows feet")) + setattr(cls, "crows-foot stomp", + PermissibleValue(text="crows-foot stomp")) + setattr(cls, "", + PermissibleValue(text="")) + setattr(cls, "double skip", + PermissibleValue(text="double skip")) + setattr(cls, "hawk and trowel", + PermissibleValue(text="hawk and trowel")) + setattr(cls, "orange peel", + PermissibleValue(text="orange peel")) + setattr(cls, "rosebud stomp", + PermissibleValue(text="rosebud stomp")) + setattr(cls, "Santa-Fe texture", + PermissibleValue(text="Santa-Fe texture")) + setattr(cls, "skip trowel", + PermissibleValue(text="skip trowel")) + setattr(cls, "stomp knockdown", + PermissibleValue(text="stomp knockdown")) -class WallSurfTreatmentEnum(EnumDefinitionImpl): +class SurfMaterialEnum(EnumDefinitionImpl): - painted = PermissibleValue(text="painted") - paneling = PermissibleValue(text="paneling") + adobe = PermissibleValue(text="adobe") + carpet = PermissibleValue(text="carpet") + concrete = PermissibleValue(text="concrete") + glass = PermissibleValue(text="glass") + metal = PermissibleValue(text="metal") + paint = PermissibleValue(text="paint") + plastic = PermissibleValue(text="plastic") + stone = PermissibleValue(text="stone") stucco = PermissibleValue(text="stucco") - fabric = PermissibleValue(text="fabric") - - _defn = EnumDefinition( - name="WallSurfTreatmentEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "wall paper", - PermissibleValue(text="wall paper")) - setattr(cls, "no treatment", - PermissibleValue(text="no treatment")) - -class QuadPosEnum(EnumDefinitionImpl): + tile = PermissibleValue(text="tile") + vinyl = PermissibleValue(text="vinyl") + wood = PermissibleValue(text="wood") _defn = EnumDefinition( - name="QuadPosEnum", + name="SurfMaterialEnum", ) @classmethod def _addvals(cls): - setattr(cls, "North side", - PermissibleValue(text="North side")) - setattr(cls, "West side", - PermissibleValue(text="West side")) - setattr(cls, "South side", - PermissibleValue(text="South side")) - setattr(cls, "East side", - PermissibleValue(text="East side")) + setattr(cls, "cinder blocks", + PermissibleValue(text="cinder blocks")) + setattr(cls, "hay bales", + PermissibleValue(text="hay bales")) + setattr(cls, "stainless steel", + PermissibleValue(text="stainless steel")) -class SrKerogTypeEnum(EnumDefinitionImpl): +class BioticRelationshipEnum(EnumDefinitionImpl): - other = PermissibleValue(text="other") + parasite = PermissibleValue(text="parasite") + commensal = PermissibleValue(text="commensal") + symbiont = PermissibleValue(text="symbiont") _defn = EnumDefinition( - name="SrKerogTypeEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "Type I", - PermissibleValue(text="Type I")) - setattr(cls, "Type II", - PermissibleValue(text="Type II")) - setattr(cls, "Type III", - PermissibleValue(text="Type III")) - setattr(cls, "Type IV", - PermissibleValue(text="Type IV")) + name="BioticRelationshipEnum", + ) -class WaterFeatTypeEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "free living", + PermissibleValue(text="free living")) - fountain = PermissibleValue(text="fountain") - pool = PermissibleValue(text="pool") - stream = PermissibleValue(text="stream") - waterfall = PermissibleValue(text="waterfall") +class SampSubtypeEnum(EnumDefinitionImpl): + + biofilm = PermissibleValue(text="biofilm") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="WaterFeatTypeEnum", + name="SampSubtypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "standing feature", - PermissibleValue(text="standing feature")) + setattr(cls, "oil phase", + PermissibleValue(text="oil phase")) + setattr(cls, "water phase", + PermissibleValue(text="water phase")) + setattr(cls, "not applicable", + PermissibleValue(text="not applicable")) -class CeilCondEnum(EnumDefinitionImpl): +class HcrEnum(EnumDefinitionImpl): - new = PermissibleValue(text="new") - damaged = PermissibleValue(text="damaged") - rupture = PermissibleValue(text="rupture") + Coalbed = PermissibleValue(text="Coalbed") + Shale = PermissibleValue(text="Shale") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="CeilCondEnum", + name="HcrEnum", ) @classmethod def _addvals(cls): - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) + setattr(cls, "Oil Reservoir", + PermissibleValue(text="Oil Reservoir")) + setattr(cls, "Gas Reservoir", + PermissibleValue(text="Gas Reservoir")) + setattr(cls, "Oil Sand", + PermissibleValue(text="Oil Sand")) + setattr(cls, "Tight Oil Reservoir", + PermissibleValue(text="Tight Oil Reservoir")) + setattr(cls, "Tight Gas Reservoir", + PermissibleValue(text="Tight Gas Reservoir")) -class SampMdEnum(EnumDefinitionImpl): +class WallFinishMatEnum(EnumDefinitionImpl): - DF = PermissibleValue(text="DF") - RT = PermissibleValue(text="RT") - KB = PermissibleValue(text="KB") - MSL = PermissibleValue(text="MSL") - other = PermissibleValue(text="other") + plaster = PermissibleValue(text="plaster") + tile = PermissibleValue(text="tile") + terrazzo = PermissibleValue(text="terrazzo") + wood = PermissibleValue(text="wood") + metal = PermissibleValue(text="metal") + masonry = PermissibleValue(text="masonry") _defn = EnumDefinition( - name="SampMdEnum", + name="WallFinishMatEnum", ) -class TrainLineEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "gypsum plaster", + PermissibleValue(text="gypsum plaster")) + setattr(cls, "veneer plaster", + PermissibleValue(text="veneer plaster")) + setattr(cls, "gypsum board", + PermissibleValue(text="gypsum board")) + setattr(cls, "stone facing", + PermissibleValue(text="stone facing")) + setattr(cls, "acoustical treatment", + PermissibleValue(text="acoustical treatment")) - red = PermissibleValue(text="red") - green = PermissibleValue(text="green") - orange = PermissibleValue(text="orange") +class SeasonUseEnum(EnumDefinitionImpl): + + Spring = PermissibleValue(text="Spring") + Summer = PermissibleValue(text="Summer") + Fall = PermissibleValue(text="Fall") + Winter = PermissibleValue(text="Winter") _defn = EnumDefinition( - name="TrainLineEnum", + name="SeasonUseEnum", ) -class SampDisStageEnum(EnumDefinitionImpl): +class FloorStrucEnum(EnumDefinitionImpl): - dissemination = PermissibleValue(text="dissemination") - infection = PermissibleValue(text="infection") - inoculation = PermissibleValue(text="inoculation") - penetration = PermissibleValue(text="penetration") - other = PermissibleValue(text="other") + balcony = PermissibleValue(text="balcony") + concrete = PermissibleValue(text="concrete") _defn = EnumDefinition( - name="SampDisStageEnum", + name="FloorStrucEnum", ) @classmethod def _addvals(cls): - setattr(cls, "growth and reproduction", - PermissibleValue(text="growth and reproduction")) + setattr(cls, "floating floor", + PermissibleValue(text="floating floor")) + setattr(cls, "glass floor", + PermissibleValue(text="glass floor")) + setattr(cls, "raised floor", + PermissibleValue(text="raised floor")) + setattr(cls, "sprung floor", + PermissibleValue(text="sprung floor")) + setattr(cls, "wood-framed", + PermissibleValue(text="wood-framed")) class DeposEnvEnum(EnumDefinitionImpl): @@ -8402,105 +8253,159 @@ def _addvals(cls): setattr(cls, "Other - Volcanic", PermissibleValue(text="Other - Volcanic")) -class MechStrucEnum(EnumDefinitionImpl): +class RoomLocEnum(EnumDefinitionImpl): - subway = PermissibleValue(text="subway") - coach = PermissibleValue(text="coach") - carriage = PermissibleValue(text="carriage") + _defn = EnumDefinition( + name="RoomLocEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "corner room", + PermissibleValue(text="corner room")) + setattr(cls, "interior room", + PermissibleValue(text="interior room")) + setattr(cls, "exterior wall", + PermissibleValue(text="exterior wall")) + +class ProfilePositionEnum(EnumDefinitionImpl): + + summit = PermissibleValue(text="summit") + shoulder = PermissibleValue(text="shoulder") + backslope = PermissibleValue(text="backslope") + footslope = PermissibleValue(text="footslope") + toeslope = PermissibleValue(text="toeslope") + + _defn = EnumDefinition( + name="ProfilePositionEnum", + ) + +class IndoorSpaceEnum(EnumDefinitionImpl): + + bedroom = PermissibleValue(text="bedroom") + office = PermissibleValue(text="office") + bathroom = PermissibleValue(text="bathroom") + foyer = PermissibleValue(text="foyer") + kitchen = PermissibleValue(text="kitchen") + hallway = PermissibleValue(text="hallway") elevator = PermissibleValue(text="elevator") - escalator = PermissibleValue(text="escalator") - boat = PermissibleValue(text="boat") - train = PermissibleValue(text="train") - car = PermissibleValue(text="car") - bus = PermissibleValue(text="bus") _defn = EnumDefinition( - name="MechStrucEnum", + name="IndoorSpaceEnum", ) -class SampFloorEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "locker room", + PermissibleValue(text="locker room")) - basement = PermissibleValue(text="basement") - lobby = PermissibleValue(text="lobby") +class SampCaptStatusEnum(EnumDefinitionImpl): + + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="SampFloorEnum", + name="SampCaptStatusEnum", ) @classmethod def _addvals(cls): - setattr(cls, "1st floor", - PermissibleValue(text="1st floor")) - setattr(cls, "2nd floor", - PermissibleValue(text="2nd floor")) + setattr(cls, "active surveillance in response to an outbreak", + PermissibleValue(text="active surveillance in response to an outbreak")) + setattr(cls, "active surveillance not initiated by an outbreak", + PermissibleValue(text="active surveillance not initiated by an outbreak")) + setattr(cls, "farm sample", + PermissibleValue(text="farm sample")) + setattr(cls, "market sample", + PermissibleValue(text="market sample")) -class SrGeolAgeEnum(EnumDefinitionImpl): +class FurnitureEnum(EnumDefinitionImpl): - Archean = PermissibleValue(text="Archean") - Cambrian = PermissibleValue(text="Cambrian") - Carboniferous = PermissibleValue(text="Carboniferous") - Cenozoic = PermissibleValue(text="Cenozoic") - Cretaceous = PermissibleValue(text="Cretaceous") - Devonian = PermissibleValue(text="Devonian") - Jurassic = PermissibleValue(text="Jurassic") - Mesozoic = PermissibleValue(text="Mesozoic") - Neogene = PermissibleValue(text="Neogene") - Ordovician = PermissibleValue(text="Ordovician") - Paleogene = PermissibleValue(text="Paleogene") - Paleozoic = PermissibleValue(text="Paleozoic") - Permian = PermissibleValue(text="Permian") - Precambrian = PermissibleValue(text="Precambrian") - Proterozoic = PermissibleValue(text="Proterozoic") - Silurian = PermissibleValue(text="Silurian") - Triassic = PermissibleValue(text="Triassic") + cabinet = PermissibleValue(text="cabinet") + chair = PermissibleValue(text="chair") + desks = PermissibleValue(text="desks") + + _defn = EnumDefinition( + name="FurnitureEnum", + ) + +class HcProducedEnum(EnumDefinitionImpl): + + Oil = PermissibleValue(text="Oil") + Gas = PermissibleValue(text="Gas") + Bitumen = PermissibleValue(text="Bitumen") other = PermissibleValue(text="other") _defn = EnumDefinition( - name="SrGeolAgeEnum", + name="HcProducedEnum", ) -class WindowTypeEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "Gas-Condensate", + PermissibleValue(text="Gas-Condensate")) + setattr(cls, "Coalbed Methane", + PermissibleValue(text="Coalbed Methane")) + +class BiolStatEnum(EnumDefinitionImpl): + + wild = PermissibleValue(text="wild") + natural = PermissibleValue(text="natural") + hybrid = PermissibleValue(text="hybrid") + mutant = PermissibleValue(text="mutant") _defn = EnumDefinition( - name="WindowTypeEnum", + name="BiolStatEnum", ) @classmethod def _addvals(cls): - setattr(cls, "single-hung sash window", - PermissibleValue(text="single-hung sash window")) - setattr(cls, "horizontal sash window", - PermissibleValue(text="horizontal sash window")) - setattr(cls, "fixed window", - PermissibleValue(text="fixed window")) + setattr(cls, "semi-natural", + PermissibleValue(text="semi-natural")) + setattr(cls, "inbred line", + PermissibleValue(text="inbred line")) + setattr(cls, "breeder's line", + PermissibleValue(text="breeder's line")) + setattr(cls, "clonal selection", + PermissibleValue(text="clonal selection")) + +class WindowMatEnum(EnumDefinitionImpl): + + clad = PermissibleValue(text="clad") + fiberglass = PermissibleValue(text="fiberglass") + metal = PermissibleValue(text="metal") + vinyl = PermissibleValue(text="vinyl") + wood = PermissibleValue(text="wood") + + _defn = EnumDefinition( + name="WindowMatEnum", + ) -class BuildOccupTypeEnum(EnumDefinitionImpl): +class RoomSampPosEnum(EnumDefinitionImpl): - office = PermissibleValue(text="office") - market = PermissibleValue(text="market") - restaurant = PermissibleValue(text="restaurant") - residence = PermissibleValue(text="residence") - school = PermissibleValue(text="school") - residential = PermissibleValue(text="residential") - commercial = PermissibleValue(text="commercial") - airport = PermissibleValue(text="airport") + center = PermissibleValue(text="center") _defn = EnumDefinition( - name="BuildOccupTypeEnum", + name="RoomSampPosEnum", ) @classmethod def _addvals(cls): - setattr(cls, "low rise", - PermissibleValue(text="low rise")) - setattr(cls, "high rise", - PermissibleValue(text="high rise")) - setattr(cls, "wood framed", - PermissibleValue(text="wood framed")) - setattr(cls, "health care", - PermissibleValue(text="health care")) - setattr(cls, "sports complex", - PermissibleValue(text="sports complex")) + setattr(cls, "north corner", + PermissibleValue(text="north corner")) + setattr(cls, "south corner", + PermissibleValue(text="south corner")) + setattr(cls, "west corner", + PermissibleValue(text="west corner")) + setattr(cls, "east corner", + PermissibleValue(text="east corner")) + setattr(cls, "northeast corner", + PermissibleValue(text="northeast corner")) + setattr(cls, "northwest corner", + PermissibleValue(text="northwest corner")) + setattr(cls, "southeast corner", + PermissibleValue(text="southeast corner")) + setattr(cls, "southwest corner", + PermissibleValue(text="southwest corner")) class SurfAirContEnum(EnumDefinitionImpl): @@ -8524,143 +8429,246 @@ def _addvals(cls): setattr(cls, "biological contaminants", PermissibleValue(text="biological contaminants")) -class DoorDirectEnum(EnumDefinitionImpl): +class DoorTypeEnum(EnumDefinitionImpl): - inward = PermissibleValue(text="inward") - outward = PermissibleValue(text="outward") - sideways = PermissibleValue(text="sideways") + composite = PermissibleValue(text="composite") + metal = PermissibleValue(text="metal") + wooden = PermissibleValue(text="wooden") _defn = EnumDefinition( - name="DoorDirectEnum", + name="DoorTypeEnum", ) -class FilterTypeEnum(EnumDefinitionImpl): +class OrganismCountEnum(EnumDefinitionImpl): - HEPA = PermissibleValue(text="HEPA") - electrostatic = PermissibleValue(text="electrostatic") + ATP = PermissibleValue(text="ATP") + MPN = PermissibleValue(text="MPN") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="FilterTypeEnum", + name="OrganismCountEnum", + ) + +class SedimentTypeEnum(EnumDefinitionImpl): + + biogenous = PermissibleValue(text="biogenous") + cosmogenous = PermissibleValue(text="cosmogenous") + hydrogenous = PermissibleValue(text="hydrogenous") + lithogenous = PermissibleValue(text="lithogenous") + + _defn = EnumDefinition( + name="SedimentTypeEnum", + ) + +class SubstructureTypeEnum(EnumDefinitionImpl): + + crawlspace = PermissibleValue(text="crawlspace") + basement = PermissibleValue(text="basement") + + _defn = EnumDefinition( + name="SubstructureTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "particulate air filter", - PermissibleValue(text="particulate air filter")) - setattr(cls, "chemical air filter", - PermissibleValue(text="chemical air filter")) - setattr(cls, "low-MERV pleated media", - PermissibleValue(text="low-MERV pleated media")) - setattr(cls, "gas-phase or ultraviolet air treatments", - PermissibleValue(text="gas-phase or ultraviolet air treatments")) + setattr(cls, "slab on grade", + PermissibleValue(text="slab on grade")) -class FloorStrucEnum(EnumDefinitionImpl): +class IndoorSurfEnum(EnumDefinitionImpl): - balcony = PermissibleValue(text="balcony") + cabinet = PermissibleValue(text="cabinet") + ceiling = PermissibleValue(text="ceiling") + door = PermissibleValue(text="door") + shelving = PermissibleValue(text="shelving") + window = PermissibleValue(text="window") + wall = PermissibleValue(text="wall") + + _defn = EnumDefinition( + name="IndoorSurfEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "counter top", + PermissibleValue(text="counter top")) + setattr(cls, "vent cover", + PermissibleValue(text="vent cover")) + +class WallSurfTreatmentEnum(EnumDefinitionImpl): + + painted = PermissibleValue(text="painted") + paneling = PermissibleValue(text="paneling") + stucco = PermissibleValue(text="stucco") + fabric = PermissibleValue(text="fabric") + + _defn = EnumDefinition( + name="WallSurfTreatmentEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "wall paper", + PermissibleValue(text="wall paper")) + setattr(cls, "no treatment", + PermissibleValue(text="no treatment")) + +class DrawingsEnum(EnumDefinitionImpl): + + operation = PermissibleValue(text="operation") + construction = PermissibleValue(text="construction") + bid = PermissibleValue(text="bid") + design = PermissibleValue(text="design") + diagram = PermissibleValue(text="diagram") + sketch = PermissibleValue(text="sketch") + + _defn = EnumDefinition( + name="DrawingsEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "as built", + PermissibleValue(text="as built")) + setattr(cls, "building navigation map", + PermissibleValue(text="building navigation map")) + +class FloorFinishMatEnum(EnumDefinitionImpl): + + tile = PermissibleValue(text="tile") + carpet = PermissibleValue(text="carpet") + rug = PermissibleValue(text="rug") + lineoleum = PermissibleValue(text="lineoleum") + stone = PermissibleValue(text="stone") + bamboo = PermissibleValue(text="bamboo") + cork = PermissibleValue(text="cork") + terrazo = PermissibleValue(text="terrazo") concrete = PermissibleValue(text="concrete") + none = PermissibleValue(text="none") + sealed = PermissibleValue(text="sealed") + paint = PermissibleValue(text="paint") _defn = EnumDefinition( - name="FloorStrucEnum", + name="FloorFinishMatEnum", ) @classmethod def _addvals(cls): - setattr(cls, "floating floor", - PermissibleValue(text="floating floor")) - setattr(cls, "glass floor", - PermissibleValue(text="glass floor")) - setattr(cls, "raised floor", - PermissibleValue(text="raised floor")) - setattr(cls, "sprung floor", - PermissibleValue(text="sprung floor")) - setattr(cls, "wood-framed", - PermissibleValue(text="wood-framed")) + setattr(cls, "wood strip or parquet", + PermissibleValue(text="wood strip or parquet")) + setattr(cls, "laminate wood", + PermissibleValue(text="laminate wood")) + setattr(cls, "vinyl composition tile", + PermissibleValue(text="vinyl composition tile")) + setattr(cls, "sheet vinyl", + PermissibleValue(text="sheet vinyl")) + setattr(cls, "clear finish", + PermissibleValue(text="clear finish")) + setattr(cls, "none or unfinished", + PermissibleValue(text="none or unfinished")) -class HeatCoolTypeEnum(EnumDefinitionImpl): +class FloorCondEnum(EnumDefinitionImpl): + + new = PermissibleValue(text="new") + damaged = PermissibleValue(text="damaged") + rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="HeatCoolTypeEnum", + name="FloorCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "radiant system", - PermissibleValue(text="radiant system")) - setattr(cls, "heat pump", - PermissibleValue(text="heat pump")) - setattr(cls, "forced air system", - PermissibleValue(text="forced air system")) - setattr(cls, "steam forced heat", - PermissibleValue(text="steam forced heat")) - setattr(cls, "wood stove", - PermissibleValue(text="wood stove")) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) -class TillageEnum(EnumDefinitionImpl): +class CurLandUseEnum(EnumDefinitionImpl): - drill = PermissibleValue(text="drill") - chisel = PermissibleValue(text="chisel") - tined = PermissibleValue(text="tined") - mouldboard = PermissibleValue(text="mouldboard") + badlands = PermissibleValue(text="badlands") + cities = PermissibleValue(text="cities") + conifers = PermissibleValue(text="conifers") + farmstead = PermissibleValue(text="farmstead") + gravel = PermissibleValue(text="gravel") + hardwoods = PermissibleValue(text="hardwoods") + hayland = PermissibleValue(text="hayland") + marshlands = PermissibleValue(text="marshlands") + meadows = PermissibleValue(text="meadows") + mudflats = PermissibleValue(text="mudflats") + pastureland = PermissibleValue(text="pastureland") + rainforest = PermissibleValue(text="rainforest") + rangeland = PermissibleValue(text="rangeland") + rock = PermissibleValue(text="rock") + sand = PermissibleValue(text="sand") + swamp = PermissibleValue(text="swamp") + tropical = PermissibleValue(text="tropical") + tundra = PermissibleValue(text="tundra") _defn = EnumDefinition( - name="TillageEnum", + name="CurLandUseEnum", ) @classmethod def _addvals(cls): - setattr(cls, "cutting disc", - PermissibleValue(text="cutting disc")) - setattr(cls, "ridge till", - PermissibleValue(text="ridge till")) - setattr(cls, "strip tillage", - PermissibleValue(text="strip tillage")) - setattr(cls, "zonal tillage", - PermissibleValue(text="zonal tillage")) - setattr(cls, "disc plough", - PermissibleValue(text="disc plough")) + setattr(cls, "crop trees", + PermissibleValue(text="crop trees")) + setattr(cls, "horticultural plants", + PermissibleValue(text="horticultural plants")) + setattr(cls, "industrial areas", + PermissibleValue(text="industrial areas")) + setattr(cls, "intermixed hardwood and conifers", + PermissibleValue(text="intermixed hardwood and conifers")) + setattr(cls, "mines/quarries", + PermissibleValue(text="mines/quarries")) + setattr(cls, "oil waste areas", + PermissibleValue(text="oil waste areas")) + setattr(cls, "permanent snow or ice", + PermissibleValue(text="permanent snow or ice")) + setattr(cls, "roads/railroads", + PermissibleValue(text="roads/railroads")) + setattr(cls, "row crops", + PermissibleValue(text="row crops")) + setattr(cls, "saline seeps", + PermissibleValue(text="saline seeps")) + setattr(cls, "salt flats", + PermissibleValue(text="salt flats")) + setattr(cls, "shrub crops", + PermissibleValue(text="shrub crops")) + setattr(cls, "shrub land", + PermissibleValue(text="shrub land")) + setattr(cls, "small grains", + PermissibleValue(text="small grains")) + setattr(cls, "successional shrub land", + PermissibleValue(text="successional shrub land")) + setattr(cls, "vegetable crops", + PermissibleValue(text="vegetable crops")) + setattr(cls, "vine crops", + PermissibleValue(text="vine crops")) -class HcrGeolAgeEnum(EnumDefinitionImpl): +class WindowHorizPosEnum(EnumDefinitionImpl): - Archean = PermissibleValue(text="Archean") - Cambrian = PermissibleValue(text="Cambrian") - Carboniferous = PermissibleValue(text="Carboniferous") - Cenozoic = PermissibleValue(text="Cenozoic") - Cretaceous = PermissibleValue(text="Cretaceous") - Devonian = PermissibleValue(text="Devonian") - Jurassic = PermissibleValue(text="Jurassic") - Mesozoic = PermissibleValue(text="Mesozoic") - Neogene = PermissibleValue(text="Neogene") - Ordovician = PermissibleValue(text="Ordovician") - Paleogene = PermissibleValue(text="Paleogene") - Paleozoic = PermissibleValue(text="Paleozoic") - Permian = PermissibleValue(text="Permian") - Precambrian = PermissibleValue(text="Precambrian") - Proterozoic = PermissibleValue(text="Proterozoic") - Silurian = PermissibleValue(text="Silurian") - Triassic = PermissibleValue(text="Triassic") - other = PermissibleValue(text="other") + left = PermissibleValue(text="left") + middle = PermissibleValue(text="middle") + right = PermissibleValue(text="right") _defn = EnumDefinition( - name="HcrGeolAgeEnum", + name="WindowHorizPosEnum", ) -class SampSubtypeEnum(EnumDefinitionImpl): - - biofilm = PermissibleValue(text="biofilm") - other = PermissibleValue(text="other") +class RelSampLocEnum(EnumDefinitionImpl): _defn = EnumDefinition( - name="SampSubtypeEnum", + name="RelSampLocEnum", ) @classmethod def _addvals(cls): - setattr(cls, "oil phase", - PermissibleValue(text="oil phase")) - setattr(cls, "water phase", - PermissibleValue(text="water phase")) - setattr(cls, "not applicable", - PermissibleValue(text="not applicable")) + setattr(cls, "edge of car", + PermissibleValue(text="edge of car")) + setattr(cls, "center of car", + PermissibleValue(text="center of car")) + setattr(cls, "under a seat", + PermissibleValue(text="under a seat")) class RoomConnectedEnum(EnumDefinitionImpl): @@ -8686,141 +8694,133 @@ def _addvals(cls): setattr(cls, "mail room", PermissibleValue(text="mail room")) -class FloorCondEnum(EnumDefinitionImpl): +class FreqCleanEnum(EnumDefinitionImpl): - new = PermissibleValue(text="new") - damaged = PermissibleValue(text="damaged") - rupture = PermissibleValue(text="rupture") + Daily = PermissibleValue(text="Daily") + Weekly = PermissibleValue(text="Weekly") + Monthly = PermissibleValue(text="Monthly") + Quarterly = PermissibleValue(text="Quarterly") + Annually = PermissibleValue(text="Annually") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="FloorCondEnum", + name="FreqCleanEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) - -class HcProducedEnum(EnumDefinitionImpl): +class BuildingSettingEnum(EnumDefinitionImpl): - Oil = PermissibleValue(text="Oil") - Gas = PermissibleValue(text="Gas") - Bitumen = PermissibleValue(text="Bitumen") - other = PermissibleValue(text="other") + urban = PermissibleValue(text="urban") + suburban = PermissibleValue(text="suburban") + exurban = PermissibleValue(text="exurban") + rural = PermissibleValue(text="rural") _defn = EnumDefinition( - name="HcProducedEnum", + name="BuildingSettingEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "Gas-Condensate", - PermissibleValue(text="Gas-Condensate")) - setattr(cls, "Coalbed Methane", - PermissibleValue(text="Coalbed Methane")) +class ExtWindowOrientEnum(EnumDefinitionImpl): -class DoorTypeWoodEnum(EnumDefinitionImpl): + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") + northeast = PermissibleValue(text="northeast") + southeast = PermissibleValue(text="southeast") + southwest = PermissibleValue(text="southwest") + northwest = PermissibleValue(text="northwest") - battened = PermissibleValue(text="battened") - flush = PermissibleValue(text="flush") - louvered = PermissibleValue(text="louvered") + _defn = EnumDefinition( + name="ExtWindowOrientEnum", + ) + +class HandidnessEnum(EnumDefinitionImpl): + + ambidexterity = PermissibleValue(text="ambidexterity") _defn = EnumDefinition( - name="DoorTypeWoodEnum", + name="HandidnessEnum", ) @classmethod def _addvals(cls): - setattr(cls, "bettened and ledged", - PermissibleValue(text="bettened and ledged")) - setattr(cls, "ledged and braced", - PermissibleValue(text="ledged and braced")) - setattr(cls, "ledged and framed", - PermissibleValue(text="ledged and framed")) - setattr(cls, "ledged, braced and frame", - PermissibleValue(text="ledged, braced and frame")) - setattr(cls, "framed and paneled", - PermissibleValue(text="framed and paneled")) - setattr(cls, "glashed or sash", - PermissibleValue(text="glashed or sash")) - setattr(cls, "wire gauged", - PermissibleValue(text="wire gauged")) + setattr(cls, "left handedness", + PermissibleValue(text="left handedness")) + setattr(cls, "mixed-handedness", + PermissibleValue(text="mixed-handedness")) + setattr(cls, "right handedness", + PermissibleValue(text="right handedness")) -class HcrEnum(EnumDefinitionImpl): +class HostSexEnum(EnumDefinitionImpl): - Coalbed = PermissibleValue(text="Coalbed") - Shale = PermissibleValue(text="Shale") - other = PermissibleValue(text="other") + female = PermissibleValue(text="female") + hermaphrodite = PermissibleValue(text="hermaphrodite") + male = PermissibleValue(text="male") + neuter = PermissibleValue(text="neuter") _defn = EnumDefinition( - name="HcrEnum", + name="HostSexEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "Oil Reservoir", - PermissibleValue(text="Oil Reservoir")) - setattr(cls, "Gas Reservoir", - PermissibleValue(text="Gas Reservoir")) - setattr(cls, "Oil Sand", - PermissibleValue(text="Oil Sand")) - setattr(cls, "Tight Oil Reservoir", - PermissibleValue(text="Tight Oil Reservoir")) - setattr(cls, "Tight Gas Reservoir", - PermissibleValue(text="Tight Gas Reservoir")) - -class BioticRelationshipEnum(EnumDefinitionImpl): +class BuildOccupTypeEnum(EnumDefinitionImpl): - parasite = PermissibleValue(text="parasite") - commensal = PermissibleValue(text="commensal") - symbiont = PermissibleValue(text="symbiont") + office = PermissibleValue(text="office") + market = PermissibleValue(text="market") + restaurant = PermissibleValue(text="restaurant") + residence = PermissibleValue(text="residence") + school = PermissibleValue(text="school") + residential = PermissibleValue(text="residential") + commercial = PermissibleValue(text="commercial") + airport = PermissibleValue(text="airport") _defn = EnumDefinition( - name="BioticRelationshipEnum", + name="BuildOccupTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "free living", - PermissibleValue(text="free living")) + setattr(cls, "low rise", + PermissibleValue(text="low rise")) + setattr(cls, "high rise", + PermissibleValue(text="high rise")) + setattr(cls, "wood framed", + PermissibleValue(text="wood framed")) + setattr(cls, "health care", + PermissibleValue(text="health care")) + setattr(cls, "sports complex", + PermissibleValue(text="sports complex")) -class DoorMoveEnum(EnumDefinitionImpl): +class WeekdayEnum(EnumDefinitionImpl): - collapsible = PermissibleValue(text="collapsible") - folding = PermissibleValue(text="folding") - revolving = PermissibleValue(text="revolving") - sliding = PermissibleValue(text="sliding") - swinging = PermissibleValue(text="swinging") + Monday = PermissibleValue(text="Monday") + Tuesday = PermissibleValue(text="Tuesday") + Wednesday = PermissibleValue(text="Wednesday") + Thursday = PermissibleValue(text="Thursday") + Friday = PermissibleValue(text="Friday") + Saturday = PermissibleValue(text="Saturday") + Sunday = PermissibleValue(text="Sunday") _defn = EnumDefinition( - name="DoorMoveEnum", + name="WeekdayEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "rolling shutter", - PermissibleValue(text="rolling shutter")) - -class RoomCondtEnum(EnumDefinitionImpl): +class TrainStatLocEnum(EnumDefinitionImpl): - new = PermissibleValue(text="new") - damaged = PermissibleValue(text="damaged") - rupture = PermissibleValue(text="rupture") + riverside = PermissibleValue(text="riverside") _defn = EnumDefinition( - name="RoomCondtEnum", + name="TrainStatLocEnum", ) @classmethod def _addvals(cls): - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) - setattr(cls, "visible signs of mold/mildew", - PermissibleValue(text="visible signs of mold/mildew")) + setattr(cls, "south station above ground", + PermissibleValue(text="south station above ground")) + setattr(cls, "south station underground", + PermissibleValue(text="south station underground")) + setattr(cls, "south station amtrak", + PermissibleValue(text="south station amtrak")) + setattr(cls, "forest hills", + PermissibleValue(text="forest hills")) # Slots class slots: @@ -9380,10 +9380,10 @@ class slots: model_uri=NMDC.has_raw_value, domain=AttributeValue, range=Optional[str]) slots.has_unit = Slot(uri=NMDC.has_unit, name="has_unit", curie=NMDC.curie('has_unit'), - model_uri=NMDC.has_unit, domain=None, range=Optional[str], mappings = [QUD.unit, SCHEMA.unitCode]) + model_uri=NMDC.has_unit, domain=None, range=Optional[str], mappings = [QUD["unit"], SCHEMA["unitCode"]]) slots.has_numeric_value = Slot(uri=NMDC.has_numeric_value, name="has_numeric_value", curie=NMDC.curie('has_numeric_value'), - model_uri=NMDC.has_numeric_value, domain=None, range=Optional[float], mappings = [QUD.quantityValue, SCHEMA.value]) + model_uri=NMDC.has_numeric_value, domain=None, range=Optional[float], mappings = [QUD["quantityValue"], SCHEMA["value"]]) slots.has_minimum_numeric_value = Slot(uri=NMDC.has_minimum_numeric_value, name="has_minimum_numeric_value", curie=NMDC.curie('has_minimum_numeric_value'), model_uri=NMDC.has_minimum_numeric_value, domain=None, range=Optional[float]) @@ -9395,10 +9395,10 @@ class slots: model_uri=NMDC.has_boolean_value, domain=None, range=Optional[Union[bool, Bool]]) slots.latitude = Slot(uri=WGS84.lat, name="latitude", curie=WGS84.curie('lat'), - model_uri=NMDC.latitude, domain=GeolocationValue, range=Optional[float], mappings = [SCHEMA.latitude]) + model_uri=NMDC.latitude, domain=GeolocationValue, range=Optional[float], mappings = [SCHEMA["latitude"]]) slots.longitude = Slot(uri=WGS84.long, name="longitude", curie=WGS84.curie('long'), - model_uri=NMDC.longitude, domain=GeolocationValue, range=Optional[float], mappings = [SCHEMA.longitude]) + model_uri=NMDC.longitude, domain=GeolocationValue, range=Optional[float], mappings = [SCHEMA["longitude"]]) slots.term = Slot(uri=NMDC.term, name="term", curie=NMDC.curie('term'), model_uri=NMDC.term, domain=ControlledTermValue, range=Optional[Union[dict, OntologyClass]]) @@ -9443,13 +9443,14 @@ class slots: model_uri=NMDC.md5_checksum, domain=None, range=Optional[str]) slots.keywords = Slot(uri=NMDC.keywords, name="keywords", curie=NMDC.curie('keywords'), - model_uri=NMDC.keywords, domain=None, range=Optional[Union[str, List[str]]], mappings = [DCTERMS.subject]) + model_uri=NMDC.keywords, domain=None, range=Optional[Union[str, List[str]]], mappings = [DCTERMS["subject"]]) slots.objective = Slot(uri=NMDC.objective, name="objective", curie=NMDC.curie('objective'), model_uri=NMDC.objective, domain=None, range=Optional[str], mappings = [SIO["000337"]]) slots.websites = Slot(uri=NMDC.websites, name="websites", curie=NMDC.curie('websites'), - model_uri=NMDC.websites, domain=None, range=Optional[Union[str, List[str]]]) + model_uri=NMDC.websites, domain=None, range=Optional[Union[str, List[str]]], + pattern=re.compile(r'^[Hh][Tt][Tt][Pp][Ss]?:\/\/(?!.*[Dd][Oo][Ii]\.[Oo][Rr][Gg]).*$')) slots.highest_similarity_score = Slot(uri=NMDC.highest_similarity_score, name="highest_similarity_score", curie=NMDC.curie('highest_similarity_score'), model_uri=NMDC.highest_similarity_score, domain=None, range=Optional[float]) @@ -9497,21 +9498,21 @@ class slots: model_uri=NMDC.smiles, domain=None, range=Optional[Union[str, List[str]]]) slots.started_at_time = Slot(uri=NMDC.started_at_time, name="started_at_time", curie=NMDC.curie('started_at_time'), - model_uri=NMDC.started_at_time, domain=None, range=Optional[str], mappings = [PROV.startedAtTime], + model_uri=NMDC.started_at_time, domain=None, range=Optional[str], mappings = [PROV["startedAtTime"]], pattern=re.compile(r'^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$')) slots.ended_at_time = Slot(uri=NMDC.ended_at_time, name="ended_at_time", curie=NMDC.curie('ended_at_time'), - model_uri=NMDC.ended_at_time, domain=None, range=Optional[str], mappings = [PROV.endedAtTime], + model_uri=NMDC.ended_at_time, domain=None, range=Optional[str], mappings = [PROV["endedAtTime"]], pattern=re.compile(r'^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$')) slots.was_informed_by = Slot(uri=NMDC.was_informed_by, name="was_informed_by", curie=NMDC.curie('was_informed_by'), - model_uri=NMDC.was_informed_by, domain=None, range=Optional[Union[str, ActivityId]], mappings = [PROV.wasInformedBy]) + model_uri=NMDC.was_informed_by, domain=None, range=Optional[Union[str, ActivityId]], mappings = [PROV["wasInformedBy"]]) slots.was_generated_by = Slot(uri=NMDC.was_generated_by, name="was_generated_by", curie=NMDC.curie('was_generated_by'), - model_uri=NMDC.was_generated_by, domain=None, range=Optional[Union[str, ActivityId]], mappings = [PROV.wasGeneratedBy]) + model_uri=NMDC.was_generated_by, domain=None, range=Optional[Union[str, ActivityId]], mappings = [PROV["wasGeneratedBy"]]) slots.used = Slot(uri=NMDC.used, name="used", curie=NMDC.curie('used'), - model_uri=NMDC.used, domain=Activity, range=Optional[str], mappings = [PROV.used]) + model_uri=NMDC.used, domain=Activity, range=Optional[str], mappings = [PROV["used"]]) slots.id = Slot(uri=NMDC.id, name="id", curie=NMDC.curie('id'), model_uri=NMDC.id, domain=None, range=URIRef, @@ -11404,26 +11405,26 @@ class slots: slots.xylene = Slot(uri=MIXS['0000156'], name="xylene", curie=MIXS.curie('0000156'), model_uri=NMDC.xylene, domain=None, range=Optional[Union[dict, QuantityValue]]) -slots.nucleic_acid_sequence_source_field = Slot(uri=NMDC.nucleic_acid_sequence_source_field, name="nucleic acid sequence source field", curie=NMDC.curie('nucleic_acid_sequence_source_field'), - model_uri=NMDC.nucleic_acid_sequence_source_field, domain=None, range=Optional[str]) - slots.has_raw_value = Slot(uri=NMDC.has_raw_value, name="has raw value", curie=NMDC.curie('has_raw_value'), model_uri=NMDC.has_raw_value, domain=None, range=Optional[str]) -slots.environment_field = Slot(uri=NMDC.environment_field, name="environment field", curie=NMDC.curie('environment_field'), - model_uri=NMDC.environment_field, domain=None, range=Optional[str]) +slots.nucleic_acid_sequence_source_field = Slot(uri=NMDC.nucleic_acid_sequence_source_field, name="nucleic acid sequence source field", curie=NMDC.curie('nucleic_acid_sequence_source_field'), + model_uri=NMDC.nucleic_acid_sequence_source_field, domain=None, range=Optional[str]) -slots.core_field = Slot(uri=NMDC.core_field, name="core field", curie=NMDC.curie('core_field'), - model_uri=NMDC.core_field, domain=None, range=Optional[str]) +slots.sequencing_field = Slot(uri=NMDC.sequencing_field, name="sequencing field", curie=NMDC.curie('sequencing_field'), + model_uri=NMDC.sequencing_field, domain=None, range=Optional[str]) slots.has_numeric_value = Slot(uri=NMDC.has_numeric_value, name="has numeric value", curie=NMDC.curie('has_numeric_value'), model_uri=NMDC.has_numeric_value, domain=None, range=Optional[float]) +slots.core_field = Slot(uri=NMDC.core_field, name="core field", curie=NMDC.curie('core_field'), + model_uri=NMDC.core_field, domain=None, range=Optional[str]) + slots.has_unit = Slot(uri=NMDC.has_unit, name="has unit", curie=NMDC.curie('has_unit'), model_uri=NMDC.has_unit, domain=None, range=Optional[str]) -slots.sequencing_field = Slot(uri=NMDC.sequencing_field, name="sequencing field", curie=NMDC.curie('sequencing_field'), - model_uri=NMDC.sequencing_field, domain=None, range=Optional[str]) +slots.environment_field = Slot(uri=NMDC.environment_field, name="environment field", curie=NMDC.curie('environment_field'), + model_uri=NMDC.environment_field, domain=None, range=Optional[str]) slots.investigation_field = Slot(uri=NMDC.investigation_field, name="investigation field", curie=NMDC.curie('investigation_field'), model_uri=NMDC.investigation_field, domain=None, range=Optional[str]) @@ -11673,7 +11674,8 @@ class slots: model_uri=NMDC.Study_name, domain=Study, range=Optional[str]) slots.Study_websites = Slot(uri=NMDC.websites, name="Study_websites", curie=NMDC.curie('websites'), - model_uri=NMDC.Study_websites, domain=Study, range=Optional[Union[str, List[str]]]) + model_uri=NMDC.Study_websites, domain=Study, range=Optional[Union[str, List[str]]], + pattern=re.compile(r'^[Hh][Tt][Tt][Pp][Ss]?:\/\/(?!.*[Dd][Oo][Ii]\.[Oo][Rr][Gg]).*$')) slots.Study_description = Slot(uri=DCTERMS.description, name="Study_description", curie=DCTERMS.curie('description'), model_uri=NMDC.Study_description, domain=Study, range=Optional[str]) @@ -11749,11 +11751,11 @@ class slots: pattern=re.compile(r'.*')) slots.WorkflowExecutionActivity_started_at_time = Slot(uri=NMDC.started_at_time, name="WorkflowExecutionActivity_started_at_time", curie=NMDC.curie('started_at_time'), - model_uri=NMDC.WorkflowExecutionActivity_started_at_time, domain=WorkflowExecutionActivity, range=str, mappings = [PROV.startedAtTime], + model_uri=NMDC.WorkflowExecutionActivity_started_at_time, domain=WorkflowExecutionActivity, range=str, mappings = [PROV["startedAtTime"]], pattern=re.compile(r'^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$')) slots.WorkflowExecutionActivity_ended_at_time = Slot(uri=NMDC.ended_at_time, name="WorkflowExecutionActivity_ended_at_time", curie=NMDC.curie('ended_at_time'), - model_uri=NMDC.WorkflowExecutionActivity_ended_at_time, domain=WorkflowExecutionActivity, range=str, mappings = [PROV.endedAtTime], + model_uri=NMDC.WorkflowExecutionActivity_ended_at_time, domain=WorkflowExecutionActivity, range=str, mappings = [PROV["endedAtTime"]], pattern=re.compile(r'^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$')) slots.WorkflowExecutionActivity_git_url = Slot(uri=NMDC.git_url, name="WorkflowExecutionActivity_git_url", curie=NMDC.curie('git_url'), @@ -11816,14 +11818,14 @@ class slots: pattern=re.compile(r'.*')) slots.MetaproteomicsAnalysisActivity_used = Slot(uri=NMDC.used, name="MetaproteomicsAnalysisActivity_used", curie=NMDC.curie('used'), - model_uri=NMDC.MetaproteomicsAnalysisActivity_used, domain=MetaproteomicsAnalysisActivity, range=Optional[str], mappings = [PROV.used]) + model_uri=NMDC.MetaproteomicsAnalysisActivity_used, domain=MetaproteomicsAnalysisActivity, range=Optional[str], mappings = [PROV["used"]]) slots.MetaproteomicsAnalysisActivity_id = Slot(uri=NMDC.id, name="MetaproteomicsAnalysisActivity_id", curie=NMDC.curie('id'), model_uri=NMDC.MetaproteomicsAnalysisActivity_id, domain=MetaproteomicsAnalysisActivity, range=Union[str, MetaproteomicsAnalysisActivityId], pattern=re.compile(r'.*')) slots.NomAnalysisActivity_used = Slot(uri=NMDC.used, name="NomAnalysisActivity_used", curie=NMDC.curie('used'), - model_uri=NMDC.NomAnalysisActivity_used, domain=NomAnalysisActivity, range=Optional[str], mappings = [PROV.used]) + model_uri=NMDC.NomAnalysisActivity_used, domain=NomAnalysisActivity, range=Optional[str], mappings = [PROV["used"]]) slots.NomAnalysisActivity_id = Slot(uri=NMDC.id, name="NomAnalysisActivity_id", curie=NMDC.curie('id'), model_uri=NMDC.NomAnalysisActivity_id, domain=NomAnalysisActivity, range=Union[str, NomAnalysisActivityId], @@ -11862,10 +11864,10 @@ class slots: model_uri=NMDC.QuantityValue_has_raw_value, domain=QuantityValue, range=Optional[str]) slots.QuantityValue_has_unit = Slot(uri=NMDC.has_unit, name="QuantityValue_has_unit", curie=NMDC.curie('has_unit'), - model_uri=NMDC.QuantityValue_has_unit, domain=QuantityValue, range=Optional[str], mappings = [QUD.unit, SCHEMA.unitCode]) + model_uri=NMDC.QuantityValue_has_unit, domain=QuantityValue, range=Optional[str], mappings = [QUD["unit"], SCHEMA["unitCode"]]) slots.QuantityValue_has_numeric_value = Slot(uri=NMDC.has_numeric_value, name="QuantityValue_has_numeric_value", curie=NMDC.curie('has_numeric_value'), - model_uri=NMDC.QuantityValue_has_numeric_value, domain=QuantityValue, range=Optional[float], mappings = [QUD.quantityValue, SCHEMA.value]) + model_uri=NMDC.QuantityValue_has_numeric_value, domain=QuantityValue, range=Optional[float], mappings = [QUD["quantityValue"], SCHEMA["value"]]) slots.PersonValue_orcid = Slot(uri=NMDC.orcid, name="PersonValue_orcid", curie=NMDC.curie('orcid'), model_uri=NMDC.PersonValue_orcid, domain=PersonValue, range=Optional[str]) @@ -11892,10 +11894,10 @@ class slots: model_uri=NMDC.GeolocationValue_has_raw_value, domain=GeolocationValue, range=Optional[str]) slots.GeolocationValue_latitude = Slot(uri=WGS84.lat, name="GeolocationValue_latitude", curie=WGS84.curie('lat'), - model_uri=NMDC.GeolocationValue_latitude, domain=GeolocationValue, range=float, mappings = [SCHEMA.latitude]) + model_uri=NMDC.GeolocationValue_latitude, domain=GeolocationValue, range=float, mappings = [SCHEMA["latitude"]]) slots.GeolocationValue_longitude = Slot(uri=WGS84.long, name="GeolocationValue_longitude", curie=WGS84.curie('long'), - model_uri=NMDC.GeolocationValue_longitude, domain=GeolocationValue, range=float, mappings = [SCHEMA.longitude]) + model_uri=NMDC.GeolocationValue_longitude, domain=GeolocationValue, range=float, mappings = [SCHEMA["longitude"]]) slots.Activity_id = Slot(uri=NMDC.id, name="Activity_id", curie=NMDC.curie('id'), model_uri=NMDC.Activity_id, domain=Activity, range=Union[str, ActivityId], @@ -11946,4 +11948,4 @@ class slots: model_uri=NMDC.FunctionalAnnotation_type, domain=FunctionalAnnotation, range=Optional[Union[str, OntologyClassId]]) slots.FunctionalAnnotation_was_generated_by = Slot(uri=NMDC.was_generated_by, name="FunctionalAnnotation_was_generated_by", curie=NMDC.curie('was_generated_by'), - model_uri=NMDC.FunctionalAnnotation_was_generated_by, domain=FunctionalAnnotation, range=Optional[Union[str, MetagenomeAnnotationActivityId]], mappings = [PROV.wasGeneratedBy]) + model_uri=NMDC.FunctionalAnnotation_was_generated_by, domain=FunctionalAnnotation, range=Optional[Union[str, MetagenomeAnnotationActivityId]], mappings = [PROV["wasGeneratedBy"]]) diff --git a/nmdc_schema/nmdc_schema_accepting_legacy_ids.schema.json b/nmdc_schema/nmdc_schema_accepting_legacy_ids.schema.json index a0bf1d354d..a8c3c7430a 100644 --- a/nmdc_schema/nmdc_schema_accepting_legacy_ids.schema.json +++ b/nmdc_schema/nmdc_schema_accepting_legacy_ids.schema.json @@ -3429,11 +3429,7 @@ }, "collecting_biosamples_from_site_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/CollectingBiosamplesFromSite" - } - ] + "$ref": "#/$defs/CollectingBiosamplesFromSite" }, "type": "array" }, @@ -3453,11 +3449,7 @@ "extraction_set": { "description": "This property links a database object to the set of extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/Extraction" - } - ] + "$ref": "#/$defs/Extraction" }, "type": "array" }, @@ -3490,11 +3482,7 @@ "library_preparation_set": { "description": "This property links a database object to the set of DNA extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/LibraryPreparation" - } - ] + "$ref": "#/$defs/LibraryPreparation" }, "type": "array" }, @@ -3569,11 +3557,7 @@ "omics_processing_set": { "description": "This property links a database object to the set of omics processings within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/OmicsProcessing" - } - ] + "$ref": "#/$defs/OmicsProcessing" }, "type": "array" }, @@ -3614,11 +3598,7 @@ }, "pooling_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/Pooling" - } - ] + "$ref": "#/$defs/Pooling" }, "type": "array" }, @@ -6663,6 +6643,7 @@ "websites": { "description": "A list of websites that are associated with the entity.", "items": { + "pattern": "^[Hh][Tt][Tt][Pp][Ss]?:\\/\\/(?!.*[Dd][Oo][Ii]\\.[Oo][Rr][Gg]).*$", "type": "string" }, "type": "array" @@ -7833,6 +7814,7 @@ "websites": { "description": "A list of websites that are associated with the entity.", "items": { + "pattern": "^[Hh][Tt][Tt][Pp][Ss]?:\\/\\/(?!.*[Dd][Oo][Ii]\\.[Oo][Rr][Gg]).*$", "type": "string" }, "type": "array" @@ -8400,11 +8382,7 @@ }, "collecting_biosamples_from_site_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/CollectingBiosamplesFromSite" - } - ] + "$ref": "#/$defs/CollectingBiosamplesFromSite" }, "type": "array" }, @@ -8424,11 +8402,7 @@ "extraction_set": { "description": "This property links a database object to the set of extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/Extraction" - } - ] + "$ref": "#/$defs/Extraction" }, "type": "array" }, @@ -8461,11 +8435,7 @@ "library_preparation_set": { "description": "This property links a database object to the set of DNA extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/LibraryPreparation" - } - ] + "$ref": "#/$defs/LibraryPreparation" }, "type": "array" }, @@ -8540,11 +8510,7 @@ "omics_processing_set": { "description": "This property links a database object to the set of omics processings within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/OmicsProcessing" - } - ] + "$ref": "#/$defs/OmicsProcessing" }, "type": "array" }, @@ -8585,11 +8551,7 @@ }, "pooling_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/Pooling" - } - ] + "$ref": "#/$defs/Pooling" }, "type": "array" }, @@ -8630,5 +8592,5 @@ }, "title": "NMDC", "type": "object", - "version": "v9.1.0" + "version": "v9.2.0" } diff --git a/nmdc_schema/nmdc_schema_accepting_legacy_ids.yaml b/nmdc_schema/nmdc_schema_accepting_legacy_ids.yaml index 149380527f..52760a5a58 100644 --- a/nmdc_schema/nmdc_schema_accepting_legacy_ids.yaml +++ b/nmdc_schema/nmdc_schema_accepting_legacy_ids.yaml @@ -11,7 +11,7 @@ notes: - not importing any MIxS terms where the relationship between the name (SCN) and the id isn't 1:1 id: https://w3id.org/nmdc/nmdc -version: v9.1.0 +version: v9.2.0 license: https://creativecommons.org/publicdomain/zero/1.0/ prefixes: FMA: @@ -1439,50 +1439,164 @@ enums: text: soil water_extract_soil: text: water_extract_soil - substructure_type_enum: - name: substructure_type_enum + sr_kerog_type_enum: + name: sr_kerog_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement - window_cover_enum: - name: window_cover_enum + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + mech_struc_enum: + name: mech_struc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - room_loc_enum: - name: room_loc_enum + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + filter_type_enum: + name: filter_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - door_type_metal_enum: - name: door_type_metal_enum + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + oxy_stat_samp_enum: + name: oxy_stat_samp_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate + aerobic: + text: aerobic + anaerobic: + text: anaerobic + other: + text: other + window_type_enum: + name: window_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + arch_struc_enum: + name: arch_struc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + quad_pos_enum: + name: quad_pos_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + hcr_geol_age_enum: + name: hcr_geol_age_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other occup_document_enum: name: occup_document_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1495,58 +1609,178 @@ enums: text: manual count videos: text: videos - biol_stat_enum: - name: biol_stat_enum + plant_growth_med_enum: + name: plant_growth_med_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - build_docs_enum: - name: build_docs_enum + other artificial liquid medium: + text: other artificial liquid medium + other artificial solid medium: + text: other artificial solid medium + peat moss: + text: peat moss + perlite: + text: perlite + pumice: + text: pumice + sand: + text: sand + soil: + text: soil + vermiculite: + text: vermiculite + water: + text: water + ceil_cond_enum: + name: ceil_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - drawings_enum: - name: drawings_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + gender_restroom_enum: + name: gender_restroom_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + all gender: + text: all gender + female: + text: female + gender neurtral: + text: gender neurtral + male: + text: male + male and female: + text: male and female + unisex: + text: unisex + vis_media_enum: + name: vis_media_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + photos: + text: photos + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans + door_type_wood_enum: + name: door_type_wood_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + fao_class_enum: + name: fao_class_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Acrisols: + text: Acrisols + Andosols: + text: Andosols + Arenosols: + text: Arenosols + Cambisols: + text: Cambisols + Chernozems: + text: Chernozems + Ferralsols: + text: Ferralsols + Fluvisols: + text: Fluvisols + Gleysols: + text: Gleysols + Greyzems: + text: Greyzems + Gypsisols: + text: Gypsisols + Histosols: + text: Histosols + Kastanozems: + text: Kastanozems + Lithosols: + text: Lithosols + Luvisols: + text: Luvisols + Nitosols: + text: Nitosols + Phaeozems: + text: Phaeozems + Planosols: + text: Planosols + Podzols: + text: Podzols + Podzoluvisols: + text: Podzoluvisols + Rankers: + text: Rankers + Regosols: + text: Regosols + Rendzinas: + text: Rendzinas + Solonchaks: + text: Solonchaks + Solonetz: + text: Solonetz + Vertisols: + text: Vertisols + Yermosols: + text: Yermosols + soil_horizon_enum: + name: soil_horizon_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost + M horizon: + text: M horizon + specific_enum: + name: specific_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: operation: @@ -1559,118 +1793,50 @@ enums: text: bid design: text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - ceil_texture_enum: - name: ceil_texture_enum + photos: + text: photos + tidal_stage_enum: + name: tidal_stage_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - sr_dep_env_enum: - name: sr_dep_env_enum + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + int_wall_cond_enum: + name: int_wall_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - light_type_enum: - name: light_type_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - rel_samp_loc_enum: - name: rel_samp_loc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - drainage_class_enum: - name: drainage_class_enum + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + drainage_class_enum: + name: drainage_class_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: very poorly: @@ -1685,6 +1851,22 @@ enums: text: well excessively drained: text: excessively drained + wall_const_type_enum: + name: wall_const_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive samp_weather_enum: name: samp_weather_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1707,180 +1889,122 @@ enums: text: sunny windy: text: windy - wall_const_type_enum: - name: wall_const_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - arch_struc_enum: - name: arch_struc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - window_vert_pos_enum: - name: window_vert_pos_enum + train_line_enum: + name: train_line_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - window_mat_enum: - name: window_mat_enum + red: + text: red + green: + text: green + orange: + text: orange + ceil_type_enum: + name: ceil_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - clad: - text: clad - fiberglass: - text: fiberglass - metal: - text: metal - vinyl: - text: vinyl - wood: - text: wood - train_stop_loc_enum: - name: train_stop_loc_enum + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + samp_dis_stage_enum: + name: samp_dis_stage_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - samp_capt_status_enum: - name: samp_capt_status_enum + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other + samp_md_enum: + name: samp_md_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL other: text: other - floor_finish_mat_enum: - name: floor_finish_mat_enum + door_comp_type_enum: + name: door_comp_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - tile: - text: tile - wood strip or parquet: - text: wood strip or parquet - carpet: - text: carpet - rug: - text: rug - laminate wood: - text: laminate wood - lineoleum: - text: lineoleum - vinyl composition tile: - text: vinyl composition tile - sheet vinyl: - text: sheet vinyl - stone: - text: stone - bamboo: - text: bamboo - cork: - text: cork - terrazo: - text: terrazo - concrete: - text: concrete - none: - text: none - sealed: - text: sealed - clear finish: - text: clear finish - paint: - text: paint - none or unfinished: - text: none or unfinished - plant_growth_med_enum: - name: plant_growth_med_enum + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic + window_loc_enum: + name: window_loc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - other artificial liquid medium: - text: other artificial liquid medium - other artificial solid medium: - text: other artificial solid medium - peat moss: - text: peat moss - perlite: - text: perlite - pumice: - text: pumice - sand: - text: sand - soil: - text: soil - vermiculite: - text: vermiculite - water: - text: water - oxy_stat_samp_enum: - name: oxy_stat_samp_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + door_loc_enum: + name: door_loc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - aerobic: - text: aerobic - anaerobic: - text: anaerobic - other: - text: other - window_cond_enum: - name: window_cond_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + water_feat_type_enum: + name: water_feat_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - wall_texture_enum: - name: wall_texture_enum + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall + ceil_texture_enum: + name: ceil_texture_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: crows feet: text: crows feet crows-foot stomp: text: crows-foot stomp - ? '' - : text: '' double skip: text: double skip hawk and trowel: @@ -1903,32 +2027,46 @@ enums: text: stomp knockdown swirl: text: swirl - profile_position_enum: - name: profile_position_enum + growth_habit_enum: + name: growth_habit_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - wall_loc_enum: - name: wall_loc_enum + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + shading_device_type_enum: + name: shading_device_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning room_type_enum: name: room_type_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1983,6 +2121,92 @@ enums: text: cafe warehouse: text: warehouse + light_type_enum: + name: light_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + build_docs_enum: + name: build_docs_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown door_cond_enum: name: door_cond_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1997,70 +2221,218 @@ enums: text: rupture visible wear: text: visible wear - organism_count_enum: - name: organism_count_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - ATP: - text: ATP - MPN: - text: MPN - other: - text: other - host_sex_enum: - name: host_sex_enum + room_condt_enum: + name: room_condt_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - indoor_surf_enum: - name: indoor_surf_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + door_type_metal_enum: + name: door_type_metal_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - soil_horizon_enum: - name: soil_horizon_enum + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate + tillage_enum: + name: tillage_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - M horizon: - text: M horizon - ext_window_orient_enum: - name: ext_window_orient_enum + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + sr_lithology_enum: + name: sr_lithology_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + door_move_enum: + name: door_move_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + window_cover_enum: + name: window_cover_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + lithology_enum: + name: lithology_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic + other: + text: other + samp_floor_enum: + name: samp_floor_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + door_direct_enum: + name: door_direct_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + heat_deliv_loc_enum: + name: heat_deliv_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine + other: + text: other + sr_geol_age_enum: + name: sr_geol_age_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + ext_wall_orient_enum: + name: ext_wall_orient_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: north: @@ -2079,271 +2451,68 @@ enums: text: southwest northwest: text: northwest - cur_land_use_enum: - name: cur_land_use_enum + floor_water_mold_enum: + name: floor_water_mold_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - badlands: - text: badlands - cities: - text: cities - conifers: - text: conifers - annotations: - originally: - tag: originally - value: conifers (e.g. pine,spruce,fir,cypress) - examples: - - value: cypress - - value: fir - - value: pine - - value: spruce - crop trees: - text: crop trees - annotations: - originally: - tag: originally - value: crop trees (nuts,fruit,christmas trees,nursery trees) - examples: - - value: christmas trees - - value: fruit - - value: nursery trees - - value: nuts - farmstead: - text: farmstead - gravel: - text: gravel - hardwoods: - text: hardwoods - annotations: - originally: - tag: originally - value: hardwoods (e.g. oak,hickory,elm,aspen) - examples: - - value: aspen - - value: elm - - value: hickory - - value: oak - hayland: - text: hayland - horticultural plants: - text: horticultural plants - annotations: - originally: - tag: originally - value: horticultural plants (e.g. tulips) - examples: - - value: tulips - industrial areas: - text: industrial areas - intermixed hardwood and conifers: - text: intermixed hardwood and conifers - marshlands: - text: marshlands - annotations: - originally: - tag: originally - value: marshlands (grass,sedges,rushes) - examples: - - value: grass - - value: rushes - - value: sedgees - meadows: - text: meadows - annotations: - originally: - tag: originally - value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) - examples: - - value: alfalfa - - value: bromegrass - - value: fescue - - value: grasses - - value: timothy - mines/quarries: - text: mines/quarries - mudflats: - text: mudflats - oil waste areas: - text: oil waste areas - pastureland: - text: pastureland - annotations: - originally: - tag: originally - value: pastureland (grasslands used for livestock grazing) - comments: - - grasslands used for livestock grazing - permanent snow or ice: - text: permanent snow or ice - rainforest: - text: rainforest - annotations: - originally: - tag: originally - value: rainforest (evergreen forest receiving greater than 406 cm annual - rainfall) - comments: - - evergreen forest receiving greater than 406 cm annual rainfall - rangeland: - text: rangeland - roads/railroads: - text: roads/railroads - rock: - text: rock - row crops: - text: row crops - saline seeps: - text: saline seeps - salt flats: - text: salt flats - sand: - text: sand - shrub crops: - text: shrub crops - annotations: - originally: - tag: originally - value: shrub crops (blueberries,nursery ornamentals,filberts) - examples: - - value: blueberries - - value: filberts - - value: nursery ornamentals - shrub land: - text: shrub land - annotations: - originally: - tag: originally - value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) - examples: - - value: creosote bush - - value: eucalyptus - - value: mesquite - - value: sage-brush - - value: shrub oak - small grains: - text: small grains - successional shrub land: - text: successional shrub land - annotations: - originally: - tag: originally - value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub - dogwoods,blackberries) - examples: - - value: blackberries - - value: chokecherry - - value: hazels - - value: shrub dogwoods - - value: sumacs - - value: tree saplings - swamp: - text: swamp - annotations: - originally: - tag: originally - value: swamp (permanent or semi-permanent water body dominated by woody - plants) - comments: - - permanent or semi-permanent water body dominated by woody plants - tropical: - text: tropical - annotations: - originally: - tag: originally - value: tropical (e.g. mangrove,palms) - examples: - - value: mangrove - - value: palms - tundra: - text: tundra - annotations: - originally: - tag: originally - value: tundra (mosses,lichens) - examples: - - value: lichens - - value: mosses - vegetable crops: - text: vegetable crops - vine crops: - text: vine crops - annotations: - originally: - tag: originally - value: vine crops (grapes) - examples: - - value: grapes - fao_class_enum: - name: fao_class_enum + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + window_cond_enum: + name: window_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Acrisols: - text: Acrisols - Andosols: - text: Andosols - Arenosols: - text: Arenosols - Cambisols: - text: Cambisols - Chernozems: - text: Chernozems - Ferralsols: - text: Ferralsols - Fluvisols: - text: Fluvisols - Gleysols: - text: Gleysols - Greyzems: - text: Greyzems - Gypsisols: - text: Gypsisols - Histosols: - text: Histosols - Kastanozems: - text: Kastanozems - Lithosols: - text: Lithosols - Luvisols: - text: Luvisols - Nitosols: - text: Nitosols - Phaeozems: - text: Phaeozems - Planosols: - text: Planosols - Podzols: - text: Podzols - Podzoluvisols: - text: Podzoluvisols - Rankers: - text: Rankers - Regosols: - text: Regosols - Rendzinas: - text: Rendzinas - Solonchaks: - text: Solonchaks - Solonetz: - text: Solonetz - Vertisols: - text: Vertisols - Yermosols: - text: Yermosols - sr_lithology_enum: - name: sr_lithology_enum + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + shading_device_cond_enum: + name: shading_device_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous - other: - text: other + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + wall_loc_enum: + name: wall_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west door_mat_enum: name: door_mat_enum from_schema: https://w3id.org/nmdc/nmdc @@ -2368,520 +2537,452 @@ enums: text: wood wood/plastic composite: text: wood/plastic composite - ceil_finish_mat_enum: - name: ceil_finish_mat_enum + plant_sex_enum: + name: plant_sex_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - furniture_enum: - name: furniture_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - growth_habit_enum: - name: growth_habit_enum + Androdioecious: + text: Androdioecious + Androecious: + text: Androecious + Androgynous: + text: Androgynous + Androgynomonoecious: + text: Androgynomonoecious + Andromonoecious: + text: Andromonoecious + Bisexual: + text: Bisexual + Dichogamous: + text: Dichogamous + Diclinous: + text: Diclinous + Dioecious: + text: Dioecious + Gynodioecious: + text: Gynodioecious + Gynoecious: + text: Gynoecious + Gynomonoecious: + text: Gynomonoecious + Hermaphroditic: + text: Hermaphroditic + Imperfect: + text: Imperfect + Monoclinous: + text: Monoclinous + Monoecious: + text: Monoecious + Perfect: + text: Perfect + Polygamodioecious: + text: Polygamodioecious + Polygamomonoecious: + text: Polygamomonoecious + Polygamous: + text: Polygamous + Protandrous: + text: Protandrous + Protogynous: + text: Protogynous + Subandroecious: + text: Subandroecious + Subdioecious: + text: Subdioecious + Subgynoecious: + text: Subgynoecious + Synoecious: + text: Synoecious + Trimonoecious: + text: Trimonoecious + Trioecious: + text: Trioecious + Unisexual: + text: Unisexual + wall_texture_enum: + name: wall_texture_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate - door_type_enum: - name: door_type_enum + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + surf_material_enum: + name: surf_material_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - composite: - text: composite + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass metal: text: metal - wooden: - text: wooden - gender_restroom_enum: - name: gender_restroom_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - all gender: - text: all gender - female: - text: female - gender neurtral: - text: gender neurtral - male: - text: male - male and female: - text: male and female - unisex: - text: unisex - door_comp_type_enum: - name: door_comp_type_enum + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + biotic_relationship_enum: + name: biotic_relationship_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic - freq_clean_enum: - name: freq_clean_enum + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + samp_subtype_enum: + name: samp_subtype_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other - samp_collect_point_enum: - name: samp_collect_point_enum + hcr_enum: + name: hcr_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir other: text: other - building_setting_enum: - name: building_setting_enum + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - handidness_enum: - name: handidness_enum + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + season_use_enum: + name: season_use_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - window_horiz_pos_enum: - name: window_horiz_pos_enum + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + floor_struc_enum: + name: floor_struc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - left: - text: left - middle: - text: middle - right: - text: right - door_loc_enum: - name: door_loc_enum + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + depos_env_enum: + name: depos_env_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - ext_wall_orient_enum: - name: ext_wall_orient_enum + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic + other: + text: other + room_loc_enum: + name: room_loc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - weekday_enum: - name: weekday_enum + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + profile_position_enum: + name: profile_position_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - lithology_enum: - name: lithology_enum + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + indoor_space_enum: + name: indoor_space_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample other: text: other - ceil_type_enum: - name: ceil_type_enum + furniture_enum: + name: furniture_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - floor_water_mold_enum: - name: floor_water_mold_enum + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + hc_produced_enum: + name: hc_produced_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - plant_sex_enum: - name: plant_sex_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - Androdioecious: - text: Androdioecious - Androecious: - text: Androecious - Androgynous: - text: Androgynous - Androgynomonoecious: - text: Androgynomonoecious - Andromonoecious: - text: Andromonoecious - Bisexual: - text: Bisexual - Dichogamous: - text: Dichogamous - Diclinous: - text: Diclinous - Dioecious: - text: Dioecious - Gynodioecious: - text: Gynodioecious - Gynoecious: - text: Gynoecious - Gynomonoecious: - text: Gynomonoecious - Hermaphroditic: - text: Hermaphroditic - Imperfect: - text: Imperfect - Monoclinous: - text: Monoclinous - Monoecious: - text: Monoecious - Perfect: - text: Perfect - Polygamodioecious: - text: Polygamodioecious - Polygamomonoecious: - text: Polygamomonoecious - Polygamous: - text: Polygamous - Protandrous: - text: Protandrous - Protogynous: - text: Protogynous - Subandroecious: - text: Subandroecious - Subdioecious: - text: Subdioecious - Subgynoecious: - text: Subgynoecious - Synoecious: - text: Synoecious - Trimonoecious: - text: Trimonoecious - Trioecious: - text: Trioecious - Unisexual: - text: Unisexual - int_wall_cond_enum: - name: int_wall_cond_enum + Oil: + text: Oil + Gas-Condensate: + text: Gas-Condensate + Gas: + text: Gas + Bitumen: + text: Bitumen + Coalbed Methane: + text: Coalbed Methane + other: + text: other + biol_stat_enum: + name: biol_stat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - surf_material_enum: - name: surf_material_enum + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_mat_enum: + name: window_mat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass + clad: + text: clad + fiberglass: + text: fiberglass metal: text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile vinyl: text: vinyl wood: text: wood - indoor_space_enum: - name: indoor_space_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator - season_use_enum: - name: season_use_enum + room_samp_pos_enum: + name: room_samp_pos_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - tidal_stage_enum: - name: tidal_stage_enum + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + surf_air_cont_enum: + name: surf_air_cont_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - specific_enum: - name: specific_enum + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + door_type_enum: + name: door_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - photos: - text: photos - vis_media_enum: - name: vis_media_enum + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + organism_count_enum: + name: organism_count_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry - shading_device_type_enum: - name: shading_device_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning + ATP: + text: ATP + MPN: + text: MPN + other: + text: other sediment_type_enum: name: sediment_type_enum from_schema: https://w3id.org/nmdc/nmdc @@ -2894,44 +2995,36 @@ enums: text: hydrogenous lithogenous: text: lithogenous - window_loc_enum: - name: window_loc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - heat_deliv_loc_enum: - name: heat_deliv_loc_enum + substructure_type_enum: + name: substructure_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - train_stat_loc_enum: - name: train_stat_loc_enum + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + indoor_surf_enum: + name: indoor_surf_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall wall_surf_treatment_enum: name: wall_surf_treatment_enum from_schema: https://w3id.org/nmdc/nmdc @@ -2948,48 +3041,68 @@ enums: text: stucco fabric: text: fabric - quad_pos_enum: - name: quad_pos_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - sr_kerog_type_enum: - name: sr_kerog_type_enum + drawings_enum: + name: drawings_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - water_feat_type_enum: - name: water_feat_type_enum + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + floor_finish_mat_enum: + name: floor_finish_mat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - ceil_cond_enum: - name: ceil_cond_enum + tile: + text: tile + wood strip or parquet: + text: wood strip or parquet + carpet: + text: carpet + rug: + text: rug + laminate wood: + text: laminate wood + lineoleum: + text: lineoleum + vinyl composition tile: + text: vinyl composition tile + sheet vinyl: + text: sheet vinyl + stone: + text: stone + bamboo: + text: bamboo + cork: + text: cork + terrazo: + text: terrazo + concrete: + text: concrete + none: + text: none + sealed: + text: sealed + clear finish: + text: clear finish + paint: + text: paint + none or unfinished: + text: none or unfinished + floor_cond_enum: + name: floor_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: new: @@ -3002,350 +3115,221 @@ enums: text: damaged rupture: text: rupture - samp_md_enum: - name: samp_md_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - train_line_enum: - name: train_line_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - samp_dis_stage_enum: - name: samp_dis_stage_enum + cur_land_use_enum: + name: cur_land_use_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other - depos_env_enum: - name: depos_env_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - mech_struc_enum: - name: mech_struc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus - samp_floor_enum: - name: samp_floor_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby - sr_geol_age_enum: - name: sr_geol_age_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - window_type_enum: - name: window_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window - build_occup_type_enum: - name: build_occup_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - surf_air_cont_enum: - name: surf_air_cont_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - door_direct_enum: - name: door_direct_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - filter_type_enum: - name: filter_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - floor_struc_enum: - name: floor_struc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed - concrete: - text: concrete - heat_cool_type_enum: - name: heat_cool_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - tillage_enum: - name: tillage_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - hcr_geol_age_enum: - name: hcr_geol_age_enum + badlands: + text: badlands + cities: + text: cities + conifers: + text: conifers + annotations: + originally: + tag: originally + value: conifers (e.g. pine,spruce,fir,cypress) + examples: + - value: cypress + - value: fir + - value: pine + - value: spruce + crop trees: + text: crop trees + annotations: + originally: + tag: originally + value: crop trees (nuts,fruit,christmas trees,nursery trees) + examples: + - value: christmas trees + - value: fruit + - value: nursery trees + - value: nuts + farmstead: + text: farmstead + gravel: + text: gravel + hardwoods: + text: hardwoods + annotations: + originally: + tag: originally + value: hardwoods (e.g. oak,hickory,elm,aspen) + examples: + - value: aspen + - value: elm + - value: hickory + - value: oak + hayland: + text: hayland + horticultural plants: + text: horticultural plants + annotations: + originally: + tag: originally + value: horticultural plants (e.g. tulips) + examples: + - value: tulips + industrial areas: + text: industrial areas + intermixed hardwood and conifers: + text: intermixed hardwood and conifers + marshlands: + text: marshlands + annotations: + originally: + tag: originally + value: marshlands (grass,sedges,rushes) + examples: + - value: grass + - value: rushes + - value: sedgees + meadows: + text: meadows + annotations: + originally: + tag: originally + value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) + examples: + - value: alfalfa + - value: bromegrass + - value: fescue + - value: grasses + - value: timothy + mines/quarries: + text: mines/quarries + mudflats: + text: mudflats + oil waste areas: + text: oil waste areas + pastureland: + text: pastureland + annotations: + originally: + tag: originally + value: pastureland (grasslands used for livestock grazing) + comments: + - grasslands used for livestock grazing + permanent snow or ice: + text: permanent snow or ice + rainforest: + text: rainforest + annotations: + originally: + tag: originally + value: rainforest (evergreen forest receiving greater than 406 cm annual + rainfall) + comments: + - evergreen forest receiving greater than 406 cm annual rainfall + rangeland: + text: rangeland + roads/railroads: + text: roads/railroads + rock: + text: rock + row crops: + text: row crops + saline seeps: + text: saline seeps + salt flats: + text: salt flats + sand: + text: sand + shrub crops: + text: shrub crops + annotations: + originally: + tag: originally + value: shrub crops (blueberries,nursery ornamentals,filberts) + examples: + - value: blueberries + - value: filberts + - value: nursery ornamentals + shrub land: + text: shrub land + annotations: + originally: + tag: originally + value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) + examples: + - value: creosote bush + - value: eucalyptus + - value: mesquite + - value: sage-brush + - value: shrub oak + small grains: + text: small grains + successional shrub land: + text: successional shrub land + annotations: + originally: + tag: originally + value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub + dogwoods,blackberries) + examples: + - value: blackberries + - value: chokecherry + - value: hazels + - value: shrub dogwoods + - value: sumacs + - value: tree saplings + swamp: + text: swamp + annotations: + originally: + tag: originally + value: swamp (permanent or semi-permanent water body dominated by woody + plants) + comments: + - permanent or semi-permanent water body dominated by woody plants + tropical: + text: tropical + annotations: + originally: + tag: originally + value: tropical (e.g. mangrove,palms) + examples: + - value: mangrove + - value: palms + tundra: + text: tundra + annotations: + originally: + tag: originally + value: tundra (mosses,lichens) + examples: + - value: lichens + - value: mosses + vegetable crops: + text: vegetable crops + vine crops: + text: vine crops + annotations: + originally: + tag: originally + value: vine crops (grapes) + examples: + - value: grapes + window_horiz_pos_enum: + name: window_horiz_pos_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - samp_subtype_enum: - name: samp_subtype_enum + left: + text: left + middle: + text: middle + right: + text: right + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other + permissible_values: + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat room_connected_enum: name: room_connected_enum from_schema: https://w3id.org/nmdc/nmdc @@ -3372,124 +3356,140 @@ enums: text: office stairwell: text: stairwell - floor_cond_enum: - name: floor_cond_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - hc_produced_enum: - name: hc_produced_enum + freq_clean_enum: + name: freq_clean_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Oil: - text: Oil - Gas-Condensate: - text: Gas-Condensate - Gas: - text: Gas - Bitumen: - text: Bitumen - Coalbed Methane: - text: Coalbed Methane + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually other: text: other - door_type_wood_enum: - name: door_type_wood_enum + building_setting_enum: + name: building_setting_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - hcr_enum: - name: hcr_enum + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + ext_window_orient_enum: + name: ext_window_orient_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - biotic_relationship_enum: - name: biotic_relationship_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + handidness_enum: + name: handidness_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - door_move_enum: - name: door_move_enum + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + host_sex_enum: + name: host_sex_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - room_condt_enum: - name: room_condt_enum + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + build_occup_type_enum: + name: build_occup_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + weekday_enum: + name: weekday_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + train_stat_loc_enum: + name: train_stat_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside slots: model: name: model @@ -5045,9 +5045,12 @@ slots: websites: name: websites description: A list of websites that are associated with the entity. + comments: + - DOIs should not be included as websites. Instead, use the associated_dois slot. from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string + pattern: ^[Hh][Tt][Tt][Pp][Ss]?:\/\/(?!.*[Dd][Oo][Ii]\.[Oo][Rr][Gg]).*$ highest_similarity_score: name: highest_similarity_score todos: @@ -17703,23 +17706,17 @@ slots: slot_uri: MIXS:0000156 multivalued: false range: QuantityValue - nucleic acid sequence source field: - name: nucleic acid sequence source field - from_schema: https://w3id.org/nmdc/nmdc - abstract: true has raw value: name: has raw value from_schema: https://w3id.org/nmdc/nmdc string_serialization: '{has numeric value} {has unit}' owner: QuantityValue - environment field: - name: environment field - description: field describing environmental aspect of a sample + nucleic acid sequence source field: + name: nucleic acid sequence source field from_schema: https://w3id.org/nmdc/nmdc abstract: true - core field: - name: core field - description: basic fields + sequencing field: + name: sequencing field from_schema: https://w3id.org/nmdc/nmdc abstract: true has numeric value: @@ -17727,13 +17724,19 @@ slots: from_schema: https://w3id.org/nmdc/nmdc owner: QuantityValue range: double + core field: + name: core field + description: basic fields + from_schema: https://w3id.org/nmdc/nmdc + abstract: true has unit: name: has unit description: Example "m" from_schema: https://w3id.org/nmdc/nmdc owner: QuantityValue - sequencing field: - name: sequencing field + environment field: + name: environment field + description: field describing environmental aspect of a sample from_schema: https://w3id.org/nmdc/nmdc abstract: true investigation field: diff --git a/nmdc_schema/nmdc_schema_merged.yaml b/nmdc_schema/nmdc_schema_merged.yaml index 9bbe8b80ad..9ff5a9eda8 100644 --- a/nmdc_schema/nmdc_schema_merged.yaml +++ b/nmdc_schema/nmdc_schema_merged.yaml @@ -11,7 +11,7 @@ notes: - not importing any MIxS terms where the relationship between the name (SCN) and the id isn't 1:1 id: https://w3id.org/nmdc/nmdc -version: v9.1.0 +version: v9.2.0 license: https://creativecommons.org/publicdomain/zero/1.0/ prefixes: FMA: @@ -1439,50 +1439,164 @@ enums: text: soil water_extract_soil: text: water_extract_soil - substructure_type_enum: - name: substructure_type_enum + sr_kerog_type_enum: + name: sr_kerog_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement - window_cover_enum: - name: window_cover_enum + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + mech_struc_enum: + name: mech_struc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - room_loc_enum: - name: room_loc_enum + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + filter_type_enum: + name: filter_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - door_type_metal_enum: - name: door_type_metal_enum + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + oxy_stat_samp_enum: + name: oxy_stat_samp_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate + aerobic: + text: aerobic + anaerobic: + text: anaerobic + other: + text: other + window_type_enum: + name: window_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + arch_struc_enum: + name: arch_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + quad_pos_enum: + name: quad_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + hcr_geol_age_enum: + name: hcr_geol_age_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other occup_document_enum: name: occup_document_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -1495,58 +1609,178 @@ enums: text: manual count videos: text: videos - biol_stat_enum: - name: biol_stat_enum + plant_growth_med_enum: + name: plant_growth_med_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - build_docs_enum: - name: build_docs_enum + other artificial liquid medium: + text: other artificial liquid medium + other artificial solid medium: + text: other artificial solid medium + peat moss: + text: peat moss + perlite: + text: perlite + pumice: + text: pumice + sand: + text: sand + soil: + text: soil + vermiculite: + text: vermiculite + water: + text: water + ceil_cond_enum: + name: ceil_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - drawings_enum: - name: drawings_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + gender_restroom_enum: + name: gender_restroom_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + all gender: + text: all gender + female: + text: female + gender neurtral: + text: gender neurtral + male: + text: male + male and female: + text: male and female + unisex: + text: unisex + vis_media_enum: + name: vis_media_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + photos: + text: photos + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans + door_type_wood_enum: + name: door_type_wood_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + fao_class_enum: + name: fao_class_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Acrisols: + text: Acrisols + Andosols: + text: Andosols + Arenosols: + text: Arenosols + Cambisols: + text: Cambisols + Chernozems: + text: Chernozems + Ferralsols: + text: Ferralsols + Fluvisols: + text: Fluvisols + Gleysols: + text: Gleysols + Greyzems: + text: Greyzems + Gypsisols: + text: Gypsisols + Histosols: + text: Histosols + Kastanozems: + text: Kastanozems + Lithosols: + text: Lithosols + Luvisols: + text: Luvisols + Nitosols: + text: Nitosols + Phaeozems: + text: Phaeozems + Planosols: + text: Planosols + Podzols: + text: Podzols + Podzoluvisols: + text: Podzoluvisols + Rankers: + text: Rankers + Regosols: + text: Regosols + Rendzinas: + text: Rendzinas + Solonchaks: + text: Solonchaks + Solonetz: + text: Solonetz + Vertisols: + text: Vertisols + Yermosols: + text: Yermosols + soil_horizon_enum: + name: soil_horizon_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost + M horizon: + text: M horizon + specific_enum: + name: specific_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: operation: @@ -1559,118 +1793,50 @@ enums: text: bid design: text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - ceil_texture_enum: - name: ceil_texture_enum + photos: + text: photos + tidal_stage_enum: + name: tidal_stage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - sr_dep_env_enum: - name: sr_dep_env_enum + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + int_wall_cond_enum: + name: int_wall_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - light_type_enum: - name: light_type_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - rel_samp_loc_enum: - name: rel_samp_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - drainage_class_enum: - name: drainage_class_enum + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + drainage_class_enum: + name: drainage_class_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: very poorly: @@ -1685,6 +1851,22 @@ enums: text: well excessively drained: text: excessively drained + wall_const_type_enum: + name: wall_const_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive samp_weather_enum: name: samp_weather_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -1707,180 +1889,122 @@ enums: text: sunny windy: text: windy - wall_const_type_enum: - name: wall_const_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - arch_struc_enum: - name: arch_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - window_vert_pos_enum: - name: window_vert_pos_enum + train_line_enum: + name: train_line_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - window_mat_enum: - name: window_mat_enum + red: + text: red + green: + text: green + orange: + text: orange + ceil_type_enum: + name: ceil_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - clad: - text: clad - fiberglass: - text: fiberglass - metal: - text: metal - vinyl: - text: vinyl - wood: - text: wood - train_stop_loc_enum: - name: train_stop_loc_enum + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + samp_dis_stage_enum: + name: samp_dis_stage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - samp_capt_status_enum: - name: samp_capt_status_enum + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other + samp_md_enum: + name: samp_md_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL other: text: other - floor_finish_mat_enum: - name: floor_finish_mat_enum + door_comp_type_enum: + name: door_comp_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - tile: - text: tile - wood strip or parquet: - text: wood strip or parquet - carpet: - text: carpet - rug: - text: rug - laminate wood: - text: laminate wood - lineoleum: - text: lineoleum - vinyl composition tile: - text: vinyl composition tile - sheet vinyl: - text: sheet vinyl - stone: - text: stone - bamboo: - text: bamboo - cork: - text: cork - terrazo: - text: terrazo - concrete: - text: concrete - none: - text: none - sealed: - text: sealed - clear finish: - text: clear finish - paint: - text: paint - none or unfinished: - text: none or unfinished - plant_growth_med_enum: - name: plant_growth_med_enum + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic + window_loc_enum: + name: window_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - other artificial liquid medium: - text: other artificial liquid medium - other artificial solid medium: - text: other artificial solid medium - peat moss: - text: peat moss - perlite: - text: perlite - pumice: - text: pumice - sand: - text: sand - soil: - text: soil - vermiculite: - text: vermiculite - water: - text: water - oxy_stat_samp_enum: - name: oxy_stat_samp_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + door_loc_enum: + name: door_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - aerobic: - text: aerobic - anaerobic: - text: anaerobic - other: - text: other - window_cond_enum: - name: window_cond_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + water_feat_type_enum: + name: water_feat_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - wall_texture_enum: - name: wall_texture_enum + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall + ceil_texture_enum: + name: ceil_texture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: crows feet: text: crows feet crows-foot stomp: text: crows-foot stomp - ? '' - : text: '' double skip: text: double skip hawk and trowel: @@ -1903,32 +2027,46 @@ enums: text: stomp knockdown swirl: text: swirl - profile_position_enum: - name: profile_position_enum + growth_habit_enum: + name: growth_habit_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - wall_loc_enum: - name: wall_loc_enum + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + shading_device_type_enum: + name: shading_device_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning room_type_enum: name: room_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -1983,6 +2121,92 @@ enums: text: cafe warehouse: text: warehouse + light_type_enum: + name: light_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + build_docs_enum: + name: build_docs_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown door_cond_enum: name: door_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -1997,70 +2221,218 @@ enums: text: rupture visible wear: text: visible wear - organism_count_enum: - name: organism_count_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - ATP: - text: ATP - MPN: - text: MPN - other: - text: other - host_sex_enum: - name: host_sex_enum + room_condt_enum: + name: room_condt_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - indoor_surf_enum: - name: indoor_surf_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + door_type_metal_enum: + name: door_type_metal_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - soil_horizon_enum: - name: soil_horizon_enum + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate + tillage_enum: + name: tillage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - M horizon: - text: M horizon - ext_window_orient_enum: - name: ext_window_orient_enum + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + sr_lithology_enum: + name: sr_lithology_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + door_move_enum: + name: door_move_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + window_cover_enum: + name: window_cover_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + lithology_enum: + name: lithology_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic + other: + text: other + samp_floor_enum: + name: samp_floor_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + door_direct_enum: + name: door_direct_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + heat_deliv_loc_enum: + name: heat_deliv_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine + other: + text: other + sr_geol_age_enum: + name: sr_geol_age_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + ext_wall_orient_enum: + name: ext_wall_orient_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: north: @@ -2079,271 +2451,68 @@ enums: text: southwest northwest: text: northwest - cur_land_use_enum: - name: cur_land_use_enum + floor_water_mold_enum: + name: floor_water_mold_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - badlands: - text: badlands - cities: - text: cities - conifers: - text: conifers - annotations: - originally: - tag: originally - value: conifers (e.g. pine,spruce,fir,cypress) - examples: - - value: cypress - - value: fir - - value: pine - - value: spruce - crop trees: - text: crop trees - annotations: - originally: - tag: originally - value: crop trees (nuts,fruit,christmas trees,nursery trees) - examples: - - value: christmas trees - - value: fruit - - value: nursery trees - - value: nuts - farmstead: - text: farmstead - gravel: - text: gravel - hardwoods: - text: hardwoods - annotations: - originally: - tag: originally - value: hardwoods (e.g. oak,hickory,elm,aspen) - examples: - - value: aspen - - value: elm - - value: hickory - - value: oak - hayland: - text: hayland - horticultural plants: - text: horticultural plants - annotations: - originally: - tag: originally - value: horticultural plants (e.g. tulips) - examples: - - value: tulips - industrial areas: - text: industrial areas - intermixed hardwood and conifers: - text: intermixed hardwood and conifers - marshlands: - text: marshlands - annotations: - originally: - tag: originally - value: marshlands (grass,sedges,rushes) - examples: - - value: grass - - value: rushes - - value: sedgees - meadows: - text: meadows - annotations: - originally: - tag: originally - value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) - examples: - - value: alfalfa - - value: bromegrass - - value: fescue - - value: grasses - - value: timothy - mines/quarries: - text: mines/quarries - mudflats: - text: mudflats - oil waste areas: - text: oil waste areas - pastureland: - text: pastureland - annotations: - originally: - tag: originally - value: pastureland (grasslands used for livestock grazing) - comments: - - grasslands used for livestock grazing - permanent snow or ice: - text: permanent snow or ice - rainforest: - text: rainforest - annotations: - originally: - tag: originally - value: rainforest (evergreen forest receiving greater than 406 cm annual - rainfall) - comments: - - evergreen forest receiving greater than 406 cm annual rainfall - rangeland: - text: rangeland - roads/railroads: - text: roads/railroads - rock: - text: rock - row crops: - text: row crops - saline seeps: - text: saline seeps - salt flats: - text: salt flats - sand: - text: sand - shrub crops: - text: shrub crops - annotations: - originally: - tag: originally - value: shrub crops (blueberries,nursery ornamentals,filberts) - examples: - - value: blueberries - - value: filberts - - value: nursery ornamentals - shrub land: - text: shrub land - annotations: - originally: - tag: originally - value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) - examples: - - value: creosote bush - - value: eucalyptus - - value: mesquite - - value: sage-brush - - value: shrub oak - small grains: - text: small grains - successional shrub land: - text: successional shrub land - annotations: - originally: - tag: originally - value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub - dogwoods,blackberries) - examples: - - value: blackberries - - value: chokecherry - - value: hazels - - value: shrub dogwoods - - value: sumacs - - value: tree saplings - swamp: - text: swamp - annotations: - originally: - tag: originally - value: swamp (permanent or semi-permanent water body dominated by woody - plants) - comments: - - permanent or semi-permanent water body dominated by woody plants - tropical: - text: tropical - annotations: - originally: - tag: originally - value: tropical (e.g. mangrove,palms) - examples: - - value: mangrove - - value: palms - tundra: - text: tundra - annotations: - originally: - tag: originally - value: tundra (mosses,lichens) - examples: - - value: lichens - - value: mosses - vegetable crops: - text: vegetable crops - vine crops: - text: vine crops - annotations: - originally: - tag: originally - value: vine crops (grapes) - examples: - - value: grapes - fao_class_enum: - name: fao_class_enum + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + window_cond_enum: + name: window_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Acrisols: - text: Acrisols - Andosols: - text: Andosols - Arenosols: - text: Arenosols - Cambisols: - text: Cambisols - Chernozems: - text: Chernozems - Ferralsols: - text: Ferralsols - Fluvisols: - text: Fluvisols - Gleysols: - text: Gleysols - Greyzems: - text: Greyzems - Gypsisols: - text: Gypsisols - Histosols: - text: Histosols - Kastanozems: - text: Kastanozems - Lithosols: - text: Lithosols - Luvisols: - text: Luvisols - Nitosols: - text: Nitosols - Phaeozems: - text: Phaeozems - Planosols: - text: Planosols - Podzols: - text: Podzols - Podzoluvisols: - text: Podzoluvisols - Rankers: - text: Rankers - Regosols: - text: Regosols - Rendzinas: - text: Rendzinas - Solonchaks: - text: Solonchaks - Solonetz: - text: Solonetz - Vertisols: - text: Vertisols - Yermosols: - text: Yermosols - sr_lithology_enum: - name: sr_lithology_enum + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + shading_device_cond_enum: + name: shading_device_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous - other: - text: other + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + wall_loc_enum: + name: wall_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west door_mat_enum: name: door_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -2368,520 +2537,452 @@ enums: text: wood wood/plastic composite: text: wood/plastic composite - ceil_finish_mat_enum: - name: ceil_finish_mat_enum + plant_sex_enum: + name: plant_sex_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - furniture_enum: - name: furniture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - growth_habit_enum: - name: growth_habit_enum + Androdioecious: + text: Androdioecious + Androecious: + text: Androecious + Androgynous: + text: Androgynous + Androgynomonoecious: + text: Androgynomonoecious + Andromonoecious: + text: Andromonoecious + Bisexual: + text: Bisexual + Dichogamous: + text: Dichogamous + Diclinous: + text: Diclinous + Dioecious: + text: Dioecious + Gynodioecious: + text: Gynodioecious + Gynoecious: + text: Gynoecious + Gynomonoecious: + text: Gynomonoecious + Hermaphroditic: + text: Hermaphroditic + Imperfect: + text: Imperfect + Monoclinous: + text: Monoclinous + Monoecious: + text: Monoecious + Perfect: + text: Perfect + Polygamodioecious: + text: Polygamodioecious + Polygamomonoecious: + text: Polygamomonoecious + Polygamous: + text: Polygamous + Protandrous: + text: Protandrous + Protogynous: + text: Protogynous + Subandroecious: + text: Subandroecious + Subdioecious: + text: Subdioecious + Subgynoecious: + text: Subgynoecious + Synoecious: + text: Synoecious + Trimonoecious: + text: Trimonoecious + Trioecious: + text: Trioecious + Unisexual: + text: Unisexual + wall_texture_enum: + name: wall_texture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate - door_type_enum: - name: door_type_enum + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + surf_material_enum: + name: surf_material_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - composite: - text: composite + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass metal: text: metal - wooden: - text: wooden - gender_restroom_enum: - name: gender_restroom_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - all gender: - text: all gender - female: - text: female - gender neurtral: - text: gender neurtral - male: - text: male - male and female: - text: male and female - unisex: - text: unisex - door_comp_type_enum: - name: door_comp_type_enum + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + biotic_relationship_enum: + name: biotic_relationship_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic - freq_clean_enum: - name: freq_clean_enum + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + samp_subtype_enum: + name: samp_subtype_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other - samp_collect_point_enum: - name: samp_collect_point_enum + hcr_enum: + name: hcr_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir other: text: other - building_setting_enum: - name: building_setting_enum + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - handidness_enum: - name: handidness_enum + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + season_use_enum: + name: season_use_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - window_horiz_pos_enum: - name: window_horiz_pos_enum + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + floor_struc_enum: + name: floor_struc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - left: - text: left - middle: - text: middle - right: - text: right - door_loc_enum: - name: door_loc_enum + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + depos_env_enum: + name: depos_env_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - ext_wall_orient_enum: - name: ext_wall_orient_enum + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic + other: + text: other + room_loc_enum: + name: room_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - weekday_enum: - name: weekday_enum + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + profile_position_enum: + name: profile_position_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - lithology_enum: - name: lithology_enum + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + indoor_space_enum: + name: indoor_space_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample other: text: other - ceil_type_enum: - name: ceil_type_enum + furniture_enum: + name: furniture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - floor_water_mold_enum: - name: floor_water_mold_enum + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + hc_produced_enum: + name: hc_produced_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - plant_sex_enum: - name: plant_sex_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - Androdioecious: - text: Androdioecious - Androecious: - text: Androecious - Androgynous: - text: Androgynous - Androgynomonoecious: - text: Androgynomonoecious - Andromonoecious: - text: Andromonoecious - Bisexual: - text: Bisexual - Dichogamous: - text: Dichogamous - Diclinous: - text: Diclinous - Dioecious: - text: Dioecious - Gynodioecious: - text: Gynodioecious - Gynoecious: - text: Gynoecious - Gynomonoecious: - text: Gynomonoecious - Hermaphroditic: - text: Hermaphroditic - Imperfect: - text: Imperfect - Monoclinous: - text: Monoclinous - Monoecious: - text: Monoecious - Perfect: - text: Perfect - Polygamodioecious: - text: Polygamodioecious - Polygamomonoecious: - text: Polygamomonoecious - Polygamous: - text: Polygamous - Protandrous: - text: Protandrous - Protogynous: - text: Protogynous - Subandroecious: - text: Subandroecious - Subdioecious: - text: Subdioecious - Subgynoecious: - text: Subgynoecious - Synoecious: - text: Synoecious - Trimonoecious: - text: Trimonoecious - Trioecious: - text: Trioecious - Unisexual: - text: Unisexual - int_wall_cond_enum: - name: int_wall_cond_enum + Oil: + text: Oil + Gas-Condensate: + text: Gas-Condensate + Gas: + text: Gas + Bitumen: + text: Bitumen + Coalbed Methane: + text: Coalbed Methane + other: + text: other + biol_stat_enum: + name: biol_stat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - surf_material_enum: - name: surf_material_enum + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_mat_enum: + name: window_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass + clad: + text: clad + fiberglass: + text: fiberglass metal: text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile vinyl: text: vinyl wood: text: wood - indoor_space_enum: - name: indoor_space_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator - season_use_enum: - name: season_use_enum + room_samp_pos_enum: + name: room_samp_pos_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - tidal_stage_enum: - name: tidal_stage_enum + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + surf_air_cont_enum: + name: surf_air_cont_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - specific_enum: - name: specific_enum + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + door_type_enum: + name: door_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - photos: - text: photos - vis_media_enum: - name: vis_media_enum + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + organism_count_enum: + name: organism_count_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry - shading_device_type_enum: - name: shading_device_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning + ATP: + text: ATP + MPN: + text: MPN + other: + text: other sediment_type_enum: name: sediment_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -2894,44 +2995,36 @@ enums: text: hydrogenous lithogenous: text: lithogenous - window_loc_enum: - name: window_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - heat_deliv_loc_enum: - name: heat_deliv_loc_enum + substructure_type_enum: + name: substructure_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - train_stat_loc_enum: - name: train_stat_loc_enum + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + indoor_surf_enum: + name: indoor_surf_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall wall_surf_treatment_enum: name: wall_surf_treatment_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -2948,48 +3041,68 @@ enums: text: stucco fabric: text: fabric - quad_pos_enum: - name: quad_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - sr_kerog_type_enum: - name: sr_kerog_type_enum + drawings_enum: + name: drawings_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - water_feat_type_enum: - name: water_feat_type_enum + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + floor_finish_mat_enum: + name: floor_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - ceil_cond_enum: - name: ceil_cond_enum + tile: + text: tile + wood strip or parquet: + text: wood strip or parquet + carpet: + text: carpet + rug: + text: rug + laminate wood: + text: laminate wood + lineoleum: + text: lineoleum + vinyl composition tile: + text: vinyl composition tile + sheet vinyl: + text: sheet vinyl + stone: + text: stone + bamboo: + text: bamboo + cork: + text: cork + terrazo: + text: terrazo + concrete: + text: concrete + none: + text: none + sealed: + text: sealed + clear finish: + text: clear finish + paint: + text: paint + none or unfinished: + text: none or unfinished + floor_cond_enum: + name: floor_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: new: @@ -3002,350 +3115,221 @@ enums: text: damaged rupture: text: rupture - samp_md_enum: - name: samp_md_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - train_line_enum: - name: train_line_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - samp_dis_stage_enum: - name: samp_dis_stage_enum + cur_land_use_enum: + name: cur_land_use_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other - depos_env_enum: - name: depos_env_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - mech_struc_enum: - name: mech_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus - samp_floor_enum: - name: samp_floor_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby - sr_geol_age_enum: - name: sr_geol_age_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - window_type_enum: - name: window_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window - build_occup_type_enum: - name: build_occup_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - surf_air_cont_enum: - name: surf_air_cont_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - door_direct_enum: - name: door_direct_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - filter_type_enum: - name: filter_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - floor_struc_enum: - name: floor_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed - concrete: - text: concrete - heat_cool_type_enum: - name: heat_cool_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - tillage_enum: - name: tillage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - hcr_geol_age_enum: - name: hcr_geol_age_enum + badlands: + text: badlands + cities: + text: cities + conifers: + text: conifers + annotations: + originally: + tag: originally + value: conifers (e.g. pine,spruce,fir,cypress) + examples: + - value: cypress + - value: fir + - value: pine + - value: spruce + crop trees: + text: crop trees + annotations: + originally: + tag: originally + value: crop trees (nuts,fruit,christmas trees,nursery trees) + examples: + - value: christmas trees + - value: fruit + - value: nursery trees + - value: nuts + farmstead: + text: farmstead + gravel: + text: gravel + hardwoods: + text: hardwoods + annotations: + originally: + tag: originally + value: hardwoods (e.g. oak,hickory,elm,aspen) + examples: + - value: aspen + - value: elm + - value: hickory + - value: oak + hayland: + text: hayland + horticultural plants: + text: horticultural plants + annotations: + originally: + tag: originally + value: horticultural plants (e.g. tulips) + examples: + - value: tulips + industrial areas: + text: industrial areas + intermixed hardwood and conifers: + text: intermixed hardwood and conifers + marshlands: + text: marshlands + annotations: + originally: + tag: originally + value: marshlands (grass,sedges,rushes) + examples: + - value: grass + - value: rushes + - value: sedgees + meadows: + text: meadows + annotations: + originally: + tag: originally + value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) + examples: + - value: alfalfa + - value: bromegrass + - value: fescue + - value: grasses + - value: timothy + mines/quarries: + text: mines/quarries + mudflats: + text: mudflats + oil waste areas: + text: oil waste areas + pastureland: + text: pastureland + annotations: + originally: + tag: originally + value: pastureland (grasslands used for livestock grazing) + comments: + - grasslands used for livestock grazing + permanent snow or ice: + text: permanent snow or ice + rainforest: + text: rainforest + annotations: + originally: + tag: originally + value: rainforest (evergreen forest receiving greater than 406 cm annual + rainfall) + comments: + - evergreen forest receiving greater than 406 cm annual rainfall + rangeland: + text: rangeland + roads/railroads: + text: roads/railroads + rock: + text: rock + row crops: + text: row crops + saline seeps: + text: saline seeps + salt flats: + text: salt flats + sand: + text: sand + shrub crops: + text: shrub crops + annotations: + originally: + tag: originally + value: shrub crops (blueberries,nursery ornamentals,filberts) + examples: + - value: blueberries + - value: filberts + - value: nursery ornamentals + shrub land: + text: shrub land + annotations: + originally: + tag: originally + value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) + examples: + - value: creosote bush + - value: eucalyptus + - value: mesquite + - value: sage-brush + - value: shrub oak + small grains: + text: small grains + successional shrub land: + text: successional shrub land + annotations: + originally: + tag: originally + value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub + dogwoods,blackberries) + examples: + - value: blackberries + - value: chokecherry + - value: hazels + - value: shrub dogwoods + - value: sumacs + - value: tree saplings + swamp: + text: swamp + annotations: + originally: + tag: originally + value: swamp (permanent or semi-permanent water body dominated by woody + plants) + comments: + - permanent or semi-permanent water body dominated by woody plants + tropical: + text: tropical + annotations: + originally: + tag: originally + value: tropical (e.g. mangrove,palms) + examples: + - value: mangrove + - value: palms + tundra: + text: tundra + annotations: + originally: + tag: originally + value: tundra (mosses,lichens) + examples: + - value: lichens + - value: mosses + vegetable crops: + text: vegetable crops + vine crops: + text: vine crops + annotations: + originally: + tag: originally + value: vine crops (grapes) + examples: + - value: grapes + window_horiz_pos_enum: + name: window_horiz_pos_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - samp_subtype_enum: - name: samp_subtype_enum + left: + text: left + middle: + text: middle + right: + text: right + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other + permissible_values: + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat room_connected_enum: name: room_connected_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -3372,124 +3356,140 @@ enums: text: office stairwell: text: stairwell - floor_cond_enum: - name: floor_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - hc_produced_enum: - name: hc_produced_enum + freq_clean_enum: + name: freq_clean_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Oil: - text: Oil - Gas-Condensate: - text: Gas-Condensate - Gas: - text: Gas - Bitumen: - text: Bitumen - Coalbed Methane: - text: Coalbed Methane + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually other: text: other - door_type_wood_enum: - name: door_type_wood_enum + building_setting_enum: + name: building_setting_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - hcr_enum: - name: hcr_enum + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + ext_window_orient_enum: + name: ext_window_orient_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - biotic_relationship_enum: - name: biotic_relationship_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + handidness_enum: + name: handidness_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - door_move_enum: - name: door_move_enum + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + host_sex_enum: + name: host_sex_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - room_condt_enum: - name: room_condt_enum + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + build_occup_type_enum: + name: build_occup_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + weekday_enum: + name: weekday_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + train_stat_loc_enum: + name: train_stat_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside slots: model: name: model @@ -5045,9 +5045,12 @@ slots: websites: name: websites description: A list of websites that are associated with the entity. + comments: + - DOIs should not be included as websites. Instead, use the associated_dois slot. from_schema: https://w3id.org/nmdc/core multivalued: true range: string + pattern: ^[Hh][Tt][Tt][Pp][Ss]?:\/\/(?!.*[Dd][Oo][Ii]\.[Oo][Rr][Gg]).*$ highest_similarity_score: name: highest_similarity_score todos: @@ -17703,23 +17706,17 @@ slots: slot_uri: MIXS:0000156 multivalued: false range: QuantityValue - nucleic acid sequence source field: - name: nucleic acid sequence source field - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - abstract: true has raw value: name: has raw value from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml string_serialization: '{has numeric value} {has unit}' owner: QuantityValue - environment field: - name: environment field - description: field describing environmental aspect of a sample + nucleic acid sequence source field: + name: nucleic acid sequence source field from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true - core field: - name: core field - description: basic fields + sequencing field: + name: sequencing field from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true has numeric value: @@ -17727,13 +17724,19 @@ slots: from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml owner: QuantityValue range: double + core field: + name: core field + description: basic fields + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + abstract: true has unit: name: has unit description: Example "m" from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml owner: QuantityValue - sequencing field: - name: sequencing field + environment field: + name: environment field + description: field describing environmental aspect of a sample from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true investigation field: diff --git a/project/jsonld/nmdc.context.jsonld b/project/jsonld/nmdc.context.jsonld index cc46f68596..c295e5b7f5 100644 --- a/project/jsonld/nmdc.context.jsonld +++ b/project/jsonld/nmdc.context.jsonld @@ -1,7 +1,7 @@ { "comments": { "description": "Auto generated by LinkML jsonld context generator", - "generation_date": "2023-11-27T16:26:55", + "generation_date": "2023-11-28T21:30:12", "source": "nmdc.yaml" }, "@context": { diff --git a/project/jsonschema/nmdc.schema.json b/project/jsonschema/nmdc.schema.json index bc608d7f48..b49cd08bb9 100644 --- a/project/jsonschema/nmdc.schema.json +++ b/project/jsonschema/nmdc.schema.json @@ -3429,11 +3429,7 @@ }, "collecting_biosamples_from_site_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/CollectingBiosamplesFromSite" - } - ] + "$ref": "#/$defs/CollectingBiosamplesFromSite" }, "type": "array" }, @@ -3453,11 +3449,7 @@ "extraction_set": { "description": "This property links a database object to the set of extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/Extraction" - } - ] + "$ref": "#/$defs/Extraction" }, "type": "array" }, @@ -3490,11 +3482,7 @@ "library_preparation_set": { "description": "This property links a database object to the set of DNA extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/LibraryPreparation" - } - ] + "$ref": "#/$defs/LibraryPreparation" }, "type": "array" }, @@ -3569,11 +3557,7 @@ "omics_processing_set": { "description": "This property links a database object to the set of omics processings within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/OmicsProcessing" - } - ] + "$ref": "#/$defs/OmicsProcessing" }, "type": "array" }, @@ -3614,11 +3598,7 @@ }, "pooling_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/Pooling" - } - ] + "$ref": "#/$defs/Pooling" }, "type": "array" }, @@ -6663,6 +6643,7 @@ "websites": { "description": "A list of websites that are associated with the entity.", "items": { + "pattern": "^[Hh][Tt][Tt][Pp][Ss]?:\\/\\/(?!.*[Dd][Oo][Ii]\\.[Oo][Rr][Gg]).*$", "type": "string" }, "type": "array" @@ -7833,6 +7814,7 @@ "websites": { "description": "A list of websites that are associated with the entity.", "items": { + "pattern": "^[Hh][Tt][Tt][Pp][Ss]?:\\/\\/(?!.*[Dd][Oo][Ii]\\.[Oo][Rr][Gg]).*$", "type": "string" }, "type": "array" @@ -8400,11 +8382,7 @@ }, "collecting_biosamples_from_site_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/CollectingBiosamplesFromSite" - } - ] + "$ref": "#/$defs/CollectingBiosamplesFromSite" }, "type": "array" }, @@ -8424,11 +8402,7 @@ "extraction_set": { "description": "This property links a database object to the set of extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/Extraction" - } - ] + "$ref": "#/$defs/Extraction" }, "type": "array" }, @@ -8461,11 +8435,7 @@ "library_preparation_set": { "description": "This property links a database object to the set of DNA extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/LibraryPreparation" - } - ] + "$ref": "#/$defs/LibraryPreparation" }, "type": "array" }, @@ -8540,11 +8510,7 @@ "omics_processing_set": { "description": "This property links a database object to the set of omics processings within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/OmicsProcessing" - } - ] + "$ref": "#/$defs/OmicsProcessing" }, "type": "array" }, @@ -8585,11 +8551,7 @@ }, "pooling_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/Pooling" - } - ] + "$ref": "#/$defs/Pooling" }, "type": "array" }, @@ -8630,5 +8592,5 @@ }, "title": "NMDC", "type": "object", - "version": "v9.1.0" + "version": "v9.2.0" } \ No newline at end of file diff --git a/project/nmdc_materialized_patterns.schema.json b/project/nmdc_materialized_patterns.schema.json index 807a1ae608..7b6bd5fe1e 100644 --- a/project/nmdc_materialized_patterns.schema.json +++ b/project/nmdc_materialized_patterns.schema.json @@ -3429,11 +3429,7 @@ }, "collecting_biosamples_from_site_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/CollectingBiosamplesFromSite" - } - ] + "$ref": "#/$defs/CollectingBiosamplesFromSite" }, "type": "array" }, @@ -3453,11 +3449,7 @@ "extraction_set": { "description": "This property links a database object to the set of extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/Extraction" - } - ] + "$ref": "#/$defs/Extraction" }, "type": "array" }, @@ -3490,11 +3482,7 @@ "library_preparation_set": { "description": "This property links a database object to the set of DNA extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/LibraryPreparation" - } - ] + "$ref": "#/$defs/LibraryPreparation" }, "type": "array" }, @@ -3569,11 +3557,7 @@ "omics_processing_set": { "description": "This property links a database object to the set of omics processings within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/OmicsProcessing" - } - ] + "$ref": "#/$defs/OmicsProcessing" }, "type": "array" }, @@ -3614,11 +3598,7 @@ }, "pooling_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/Pooling" - } - ] + "$ref": "#/$defs/Pooling" }, "type": "array" }, @@ -6663,6 +6643,7 @@ "websites": { "description": "A list of websites that are associated with the entity.", "items": { + "pattern": "^[Hh][Tt][Tt][Pp][Ss]?:\\/\\/(?!.*[Dd][Oo][Ii]\\.[Oo][Rr][Gg]).*$", "type": "string" }, "type": "array" @@ -7833,6 +7814,7 @@ "websites": { "description": "A list of websites that are associated with the entity.", "items": { + "pattern": "^[Hh][Tt][Tt][Pp][Ss]?:\\/\\/(?!.*[Dd][Oo][Ii]\\.[Oo][Rr][Gg]).*$", "type": "string" }, "type": "array" @@ -8400,11 +8382,7 @@ }, "collecting_biosamples_from_site_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/CollectingBiosamplesFromSite" - } - ] + "$ref": "#/$defs/CollectingBiosamplesFromSite" }, "type": "array" }, @@ -8424,11 +8402,7 @@ "extraction_set": { "description": "This property links a database object to the set of extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/Extraction" - } - ] + "$ref": "#/$defs/Extraction" }, "type": "array" }, @@ -8461,11 +8435,7 @@ "library_preparation_set": { "description": "This property links a database object to the set of DNA extractions within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/LibraryPreparation" - } - ] + "$ref": "#/$defs/LibraryPreparation" }, "type": "array" }, @@ -8540,11 +8510,7 @@ "omics_processing_set": { "description": "This property links a database object to the set of omics processings within it.", "items": { - "anyOf": [ - { - "$ref": "#/$defs/OmicsProcessing" - } - ] + "$ref": "#/$defs/OmicsProcessing" }, "type": "array" }, @@ -8585,11 +8551,7 @@ }, "pooling_set": { "items": { - "anyOf": [ - { - "$ref": "#/$defs/Pooling" - } - ] + "$ref": "#/$defs/Pooling" }, "type": "array" }, @@ -8630,5 +8592,5 @@ }, "title": "NMDC", "type": "object", - "version": "v9.1.0" + "version": "v9.2.0" } diff --git a/project/nmdc_materialized_patterns.yaml b/project/nmdc_materialized_patterns.yaml index d163cab8cd..71ecd9e611 100644 --- a/project/nmdc_materialized_patterns.yaml +++ b/project/nmdc_materialized_patterns.yaml @@ -11,7 +11,7 @@ notes: - not importing any MIxS terms where the relationship between the name (SCN) and the id isn't 1:1 id: https://w3id.org/nmdc/nmdc -version: v9.1.0 +version: v9.2.0 license: https://creativecommons.org/publicdomain/zero/1.0/ prefixes: FMA: @@ -1439,50 +1439,164 @@ enums: text: soil water_extract_soil: text: water_extract_soil - substructure_type_enum: - name: substructure_type_enum + sr_kerog_type_enum: + name: sr_kerog_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement - window_cover_enum: - name: window_cover_enum + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + mech_struc_enum: + name: mech_struc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - room_loc_enum: - name: room_loc_enum + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + filter_type_enum: + name: filter_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - door_type_metal_enum: - name: door_type_metal_enum + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + oxy_stat_samp_enum: + name: oxy_stat_samp_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate + aerobic: + text: aerobic + anaerobic: + text: anaerobic + other: + text: other + window_type_enum: + name: window_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + arch_struc_enum: + name: arch_struc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + quad_pos_enum: + name: quad_pos_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + hcr_geol_age_enum: + name: hcr_geol_age_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other occup_document_enum: name: occup_document_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1495,58 +1609,178 @@ enums: text: manual count videos: text: videos - biol_stat_enum: - name: biol_stat_enum + plant_growth_med_enum: + name: plant_growth_med_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - build_docs_enum: - name: build_docs_enum + other artificial liquid medium: + text: other artificial liquid medium + other artificial solid medium: + text: other artificial solid medium + peat moss: + text: peat moss + perlite: + text: perlite + pumice: + text: pumice + sand: + text: sand + soil: + text: soil + vermiculite: + text: vermiculite + water: + text: water + ceil_cond_enum: + name: ceil_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - drawings_enum: - name: drawings_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + gender_restroom_enum: + name: gender_restroom_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + all gender: + text: all gender + female: + text: female + gender neurtral: + text: gender neurtral + male: + text: male + male and female: + text: male and female + unisex: + text: unisex + vis_media_enum: + name: vis_media_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + photos: + text: photos + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans + door_type_wood_enum: + name: door_type_wood_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + fao_class_enum: + name: fao_class_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Acrisols: + text: Acrisols + Andosols: + text: Andosols + Arenosols: + text: Arenosols + Cambisols: + text: Cambisols + Chernozems: + text: Chernozems + Ferralsols: + text: Ferralsols + Fluvisols: + text: Fluvisols + Gleysols: + text: Gleysols + Greyzems: + text: Greyzems + Gypsisols: + text: Gypsisols + Histosols: + text: Histosols + Kastanozems: + text: Kastanozems + Lithosols: + text: Lithosols + Luvisols: + text: Luvisols + Nitosols: + text: Nitosols + Phaeozems: + text: Phaeozems + Planosols: + text: Planosols + Podzols: + text: Podzols + Podzoluvisols: + text: Podzoluvisols + Rankers: + text: Rankers + Regosols: + text: Regosols + Rendzinas: + text: Rendzinas + Solonchaks: + text: Solonchaks + Solonetz: + text: Solonetz + Vertisols: + text: Vertisols + Yermosols: + text: Yermosols + soil_horizon_enum: + name: soil_horizon_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost + M horizon: + text: M horizon + specific_enum: + name: specific_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: operation: @@ -1559,118 +1793,50 @@ enums: text: bid design: text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - ceil_texture_enum: - name: ceil_texture_enum + photos: + text: photos + tidal_stage_enum: + name: tidal_stage_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - sr_dep_env_enum: - name: sr_dep_env_enum + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + int_wall_cond_enum: + name: int_wall_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - light_type_enum: - name: light_type_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - rel_samp_loc_enum: - name: rel_samp_loc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - drainage_class_enum: - name: drainage_class_enum + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + drainage_class_enum: + name: drainage_class_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: very poorly: @@ -1685,6 +1851,22 @@ enums: text: well excessively drained: text: excessively drained + wall_const_type_enum: + name: wall_const_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive samp_weather_enum: name: samp_weather_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1707,180 +1889,122 @@ enums: text: sunny windy: text: windy - wall_const_type_enum: - name: wall_const_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - arch_struc_enum: - name: arch_struc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - window_vert_pos_enum: - name: window_vert_pos_enum + train_line_enum: + name: train_line_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - window_mat_enum: - name: window_mat_enum + red: + text: red + green: + text: green + orange: + text: orange + ceil_type_enum: + name: ceil_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - clad: - text: clad - fiberglass: - text: fiberglass - metal: - text: metal - vinyl: - text: vinyl - wood: - text: wood - train_stop_loc_enum: - name: train_stop_loc_enum + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + samp_dis_stage_enum: + name: samp_dis_stage_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - samp_capt_status_enum: - name: samp_capt_status_enum + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other + samp_md_enum: + name: samp_md_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL other: text: other - floor_finish_mat_enum: - name: floor_finish_mat_enum + door_comp_type_enum: + name: door_comp_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - tile: - text: tile - wood strip or parquet: - text: wood strip or parquet - carpet: - text: carpet - rug: - text: rug - laminate wood: - text: laminate wood - lineoleum: - text: lineoleum - vinyl composition tile: - text: vinyl composition tile - sheet vinyl: - text: sheet vinyl - stone: - text: stone - bamboo: - text: bamboo - cork: - text: cork - terrazo: - text: terrazo - concrete: - text: concrete - none: - text: none - sealed: - text: sealed - clear finish: - text: clear finish - paint: - text: paint - none or unfinished: - text: none or unfinished - plant_growth_med_enum: - name: plant_growth_med_enum + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic + window_loc_enum: + name: window_loc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - other artificial liquid medium: - text: other artificial liquid medium - other artificial solid medium: - text: other artificial solid medium - peat moss: - text: peat moss - perlite: - text: perlite - pumice: - text: pumice - sand: - text: sand - soil: - text: soil - vermiculite: - text: vermiculite - water: - text: water - oxy_stat_samp_enum: - name: oxy_stat_samp_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + door_loc_enum: + name: door_loc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - aerobic: - text: aerobic - anaerobic: - text: anaerobic - other: - text: other - window_cond_enum: - name: window_cond_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + water_feat_type_enum: + name: water_feat_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - wall_texture_enum: - name: wall_texture_enum + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall + ceil_texture_enum: + name: ceil_texture_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: crows feet: text: crows feet crows-foot stomp: text: crows-foot stomp - ? '' - : text: '' double skip: text: double skip hawk and trowel: @@ -1903,32 +2027,46 @@ enums: text: stomp knockdown swirl: text: swirl - profile_position_enum: - name: profile_position_enum + growth_habit_enum: + name: growth_habit_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - wall_loc_enum: - name: wall_loc_enum + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + shading_device_type_enum: + name: shading_device_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning room_type_enum: name: room_type_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1983,6 +2121,92 @@ enums: text: cafe warehouse: text: warehouse + light_type_enum: + name: light_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + build_docs_enum: + name: build_docs_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown door_cond_enum: name: door_cond_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1997,70 +2221,218 @@ enums: text: rupture visible wear: text: visible wear - organism_count_enum: - name: organism_count_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - ATP: - text: ATP - MPN: - text: MPN - other: - text: other - host_sex_enum: - name: host_sex_enum + room_condt_enum: + name: room_condt_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - indoor_surf_enum: - name: indoor_surf_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + door_type_metal_enum: + name: door_type_metal_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - soil_horizon_enum: - name: soil_horizon_enum + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate + tillage_enum: + name: tillage_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - M horizon: - text: M horizon - ext_window_orient_enum: - name: ext_window_orient_enum + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + sr_lithology_enum: + name: sr_lithology_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + door_move_enum: + name: door_move_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + window_cover_enum: + name: window_cover_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + lithology_enum: + name: lithology_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic + other: + text: other + samp_floor_enum: + name: samp_floor_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + door_direct_enum: + name: door_direct_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + heat_deliv_loc_enum: + name: heat_deliv_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine + other: + text: other + sr_geol_age_enum: + name: sr_geol_age_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + ext_wall_orient_enum: + name: ext_wall_orient_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: north: @@ -2079,271 +2451,68 @@ enums: text: southwest northwest: text: northwest - cur_land_use_enum: - name: cur_land_use_enum + floor_water_mold_enum: + name: floor_water_mold_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - badlands: - text: badlands - cities: - text: cities - conifers: - text: conifers - annotations: - originally: - tag: originally - value: conifers (e.g. pine,spruce,fir,cypress) - examples: - - value: cypress - - value: fir - - value: pine - - value: spruce - crop trees: - text: crop trees - annotations: - originally: - tag: originally - value: crop trees (nuts,fruit,christmas trees,nursery trees) - examples: - - value: christmas trees - - value: fruit - - value: nursery trees - - value: nuts - farmstead: - text: farmstead - gravel: - text: gravel - hardwoods: - text: hardwoods - annotations: - originally: - tag: originally - value: hardwoods (e.g. oak,hickory,elm,aspen) - examples: - - value: aspen - - value: elm - - value: hickory - - value: oak - hayland: - text: hayland - horticultural plants: - text: horticultural plants - annotations: - originally: - tag: originally - value: horticultural plants (e.g. tulips) - examples: - - value: tulips - industrial areas: - text: industrial areas - intermixed hardwood and conifers: - text: intermixed hardwood and conifers - marshlands: - text: marshlands - annotations: - originally: - tag: originally - value: marshlands (grass,sedges,rushes) - examples: - - value: grass - - value: rushes - - value: sedgees - meadows: - text: meadows - annotations: - originally: - tag: originally - value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) - examples: - - value: alfalfa - - value: bromegrass - - value: fescue - - value: grasses - - value: timothy - mines/quarries: - text: mines/quarries - mudflats: - text: mudflats - oil waste areas: - text: oil waste areas - pastureland: - text: pastureland - annotations: - originally: - tag: originally - value: pastureland (grasslands used for livestock grazing) - comments: - - grasslands used for livestock grazing - permanent snow or ice: - text: permanent snow or ice - rainforest: - text: rainforest - annotations: - originally: - tag: originally - value: rainforest (evergreen forest receiving greater than 406 cm annual - rainfall) - comments: - - evergreen forest receiving greater than 406 cm annual rainfall - rangeland: - text: rangeland - roads/railroads: - text: roads/railroads - rock: - text: rock - row crops: - text: row crops - saline seeps: - text: saline seeps - salt flats: - text: salt flats - sand: - text: sand - shrub crops: - text: shrub crops - annotations: - originally: - tag: originally - value: shrub crops (blueberries,nursery ornamentals,filberts) - examples: - - value: blueberries - - value: filberts - - value: nursery ornamentals - shrub land: - text: shrub land - annotations: - originally: - tag: originally - value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) - examples: - - value: creosote bush - - value: eucalyptus - - value: mesquite - - value: sage-brush - - value: shrub oak - small grains: - text: small grains - successional shrub land: - text: successional shrub land - annotations: - originally: - tag: originally - value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub - dogwoods,blackberries) - examples: - - value: blackberries - - value: chokecherry - - value: hazels - - value: shrub dogwoods - - value: sumacs - - value: tree saplings - swamp: - text: swamp - annotations: - originally: - tag: originally - value: swamp (permanent or semi-permanent water body dominated by woody - plants) - comments: - - permanent or semi-permanent water body dominated by woody plants - tropical: - text: tropical - annotations: - originally: - tag: originally - value: tropical (e.g. mangrove,palms) - examples: - - value: mangrove - - value: palms - tundra: - text: tundra - annotations: - originally: - tag: originally - value: tundra (mosses,lichens) - examples: - - value: lichens - - value: mosses - vegetable crops: - text: vegetable crops - vine crops: - text: vine crops - annotations: - originally: - tag: originally - value: vine crops (grapes) - examples: - - value: grapes - fao_class_enum: - name: fao_class_enum + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + window_cond_enum: + name: window_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Acrisols: - text: Acrisols - Andosols: - text: Andosols - Arenosols: - text: Arenosols - Cambisols: - text: Cambisols - Chernozems: - text: Chernozems - Ferralsols: - text: Ferralsols - Fluvisols: - text: Fluvisols - Gleysols: - text: Gleysols - Greyzems: - text: Greyzems - Gypsisols: - text: Gypsisols - Histosols: - text: Histosols - Kastanozems: - text: Kastanozems - Lithosols: - text: Lithosols - Luvisols: - text: Luvisols - Nitosols: - text: Nitosols - Phaeozems: - text: Phaeozems - Planosols: - text: Planosols - Podzols: - text: Podzols - Podzoluvisols: - text: Podzoluvisols - Rankers: - text: Rankers - Regosols: - text: Regosols - Rendzinas: - text: Rendzinas - Solonchaks: - text: Solonchaks - Solonetz: - text: Solonetz - Vertisols: - text: Vertisols - Yermosols: - text: Yermosols - sr_lithology_enum: - name: sr_lithology_enum + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + shading_device_cond_enum: + name: shading_device_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous - other: - text: other + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + wall_loc_enum: + name: wall_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west door_mat_enum: name: door_mat_enum from_schema: https://w3id.org/nmdc/nmdc @@ -2368,520 +2537,452 @@ enums: text: wood wood/plastic composite: text: wood/plastic composite - ceil_finish_mat_enum: - name: ceil_finish_mat_enum + plant_sex_enum: + name: plant_sex_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - furniture_enum: - name: furniture_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - growth_habit_enum: - name: growth_habit_enum + Androdioecious: + text: Androdioecious + Androecious: + text: Androecious + Androgynous: + text: Androgynous + Androgynomonoecious: + text: Androgynomonoecious + Andromonoecious: + text: Andromonoecious + Bisexual: + text: Bisexual + Dichogamous: + text: Dichogamous + Diclinous: + text: Diclinous + Dioecious: + text: Dioecious + Gynodioecious: + text: Gynodioecious + Gynoecious: + text: Gynoecious + Gynomonoecious: + text: Gynomonoecious + Hermaphroditic: + text: Hermaphroditic + Imperfect: + text: Imperfect + Monoclinous: + text: Monoclinous + Monoecious: + text: Monoecious + Perfect: + text: Perfect + Polygamodioecious: + text: Polygamodioecious + Polygamomonoecious: + text: Polygamomonoecious + Polygamous: + text: Polygamous + Protandrous: + text: Protandrous + Protogynous: + text: Protogynous + Subandroecious: + text: Subandroecious + Subdioecious: + text: Subdioecious + Subgynoecious: + text: Subgynoecious + Synoecious: + text: Synoecious + Trimonoecious: + text: Trimonoecious + Trioecious: + text: Trioecious + Unisexual: + text: Unisexual + wall_texture_enum: + name: wall_texture_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate - door_type_enum: - name: door_type_enum + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + surf_material_enum: + name: surf_material_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - composite: - text: composite + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass metal: text: metal - wooden: - text: wooden - gender_restroom_enum: - name: gender_restroom_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - all gender: - text: all gender - female: - text: female - gender neurtral: - text: gender neurtral - male: - text: male - male and female: - text: male and female - unisex: - text: unisex - door_comp_type_enum: - name: door_comp_type_enum + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + biotic_relationship_enum: + name: biotic_relationship_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic - freq_clean_enum: - name: freq_clean_enum + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + samp_subtype_enum: + name: samp_subtype_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other - samp_collect_point_enum: - name: samp_collect_point_enum + hcr_enum: + name: hcr_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir other: text: other - building_setting_enum: - name: building_setting_enum + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - handidness_enum: - name: handidness_enum + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + season_use_enum: + name: season_use_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - window_horiz_pos_enum: - name: window_horiz_pos_enum + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + floor_struc_enum: + name: floor_struc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - left: - text: left - middle: - text: middle - right: - text: right - door_loc_enum: - name: door_loc_enum + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + depos_env_enum: + name: depos_env_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - ext_wall_orient_enum: - name: ext_wall_orient_enum + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic + other: + text: other + room_loc_enum: + name: room_loc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - weekday_enum: - name: weekday_enum + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + profile_position_enum: + name: profile_position_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - lithology_enum: - name: lithology_enum + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + indoor_space_enum: + name: indoor_space_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample other: text: other - ceil_type_enum: - name: ceil_type_enum + furniture_enum: + name: furniture_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - floor_water_mold_enum: - name: floor_water_mold_enum + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + hc_produced_enum: + name: hc_produced_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - plant_sex_enum: - name: plant_sex_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - Androdioecious: - text: Androdioecious - Androecious: - text: Androecious - Androgynous: - text: Androgynous - Androgynomonoecious: - text: Androgynomonoecious - Andromonoecious: - text: Andromonoecious - Bisexual: - text: Bisexual - Dichogamous: - text: Dichogamous - Diclinous: - text: Diclinous - Dioecious: - text: Dioecious - Gynodioecious: - text: Gynodioecious - Gynoecious: - text: Gynoecious - Gynomonoecious: - text: Gynomonoecious - Hermaphroditic: - text: Hermaphroditic - Imperfect: - text: Imperfect - Monoclinous: - text: Monoclinous - Monoecious: - text: Monoecious - Perfect: - text: Perfect - Polygamodioecious: - text: Polygamodioecious - Polygamomonoecious: - text: Polygamomonoecious - Polygamous: - text: Polygamous - Protandrous: - text: Protandrous - Protogynous: - text: Protogynous - Subandroecious: - text: Subandroecious - Subdioecious: - text: Subdioecious - Subgynoecious: - text: Subgynoecious - Synoecious: - text: Synoecious - Trimonoecious: - text: Trimonoecious - Trioecious: - text: Trioecious - Unisexual: - text: Unisexual - int_wall_cond_enum: - name: int_wall_cond_enum + Oil: + text: Oil + Gas-Condensate: + text: Gas-Condensate + Gas: + text: Gas + Bitumen: + text: Bitumen + Coalbed Methane: + text: Coalbed Methane + other: + text: other + biol_stat_enum: + name: biol_stat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - surf_material_enum: - name: surf_material_enum + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_mat_enum: + name: window_mat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass + clad: + text: clad + fiberglass: + text: fiberglass metal: text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile vinyl: text: vinyl wood: text: wood - indoor_space_enum: - name: indoor_space_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator - season_use_enum: - name: season_use_enum + room_samp_pos_enum: + name: room_samp_pos_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - tidal_stage_enum: - name: tidal_stage_enum + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + surf_air_cont_enum: + name: surf_air_cont_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - specific_enum: - name: specific_enum + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + door_type_enum: + name: door_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - photos: - text: photos - vis_media_enum: - name: vis_media_enum + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + organism_count_enum: + name: organism_count_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry - shading_device_type_enum: - name: shading_device_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning + ATP: + text: ATP + MPN: + text: MPN + other: + text: other sediment_type_enum: name: sediment_type_enum from_schema: https://w3id.org/nmdc/nmdc @@ -2894,44 +2995,36 @@ enums: text: hydrogenous lithogenous: text: lithogenous - window_loc_enum: - name: window_loc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - heat_deliv_loc_enum: - name: heat_deliv_loc_enum + substructure_type_enum: + name: substructure_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - train_stat_loc_enum: - name: train_stat_loc_enum + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + indoor_surf_enum: + name: indoor_surf_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall wall_surf_treatment_enum: name: wall_surf_treatment_enum from_schema: https://w3id.org/nmdc/nmdc @@ -2948,48 +3041,68 @@ enums: text: stucco fabric: text: fabric - quad_pos_enum: - name: quad_pos_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - sr_kerog_type_enum: - name: sr_kerog_type_enum + drawings_enum: + name: drawings_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - water_feat_type_enum: - name: water_feat_type_enum + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + floor_finish_mat_enum: + name: floor_finish_mat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - ceil_cond_enum: - name: ceil_cond_enum + tile: + text: tile + wood strip or parquet: + text: wood strip or parquet + carpet: + text: carpet + rug: + text: rug + laminate wood: + text: laminate wood + lineoleum: + text: lineoleum + vinyl composition tile: + text: vinyl composition tile + sheet vinyl: + text: sheet vinyl + stone: + text: stone + bamboo: + text: bamboo + cork: + text: cork + terrazo: + text: terrazo + concrete: + text: concrete + none: + text: none + sealed: + text: sealed + clear finish: + text: clear finish + paint: + text: paint + none or unfinished: + text: none or unfinished + floor_cond_enum: + name: floor_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: new: @@ -3002,350 +3115,221 @@ enums: text: damaged rupture: text: rupture - samp_md_enum: - name: samp_md_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - train_line_enum: - name: train_line_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - samp_dis_stage_enum: - name: samp_dis_stage_enum + cur_land_use_enum: + name: cur_land_use_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other - depos_env_enum: - name: depos_env_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - mech_struc_enum: - name: mech_struc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus - samp_floor_enum: - name: samp_floor_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby - sr_geol_age_enum: - name: sr_geol_age_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - window_type_enum: - name: window_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window - build_occup_type_enum: - name: build_occup_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - surf_air_cont_enum: - name: surf_air_cont_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - door_direct_enum: - name: door_direct_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - filter_type_enum: - name: filter_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - floor_struc_enum: - name: floor_struc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed - concrete: - text: concrete - heat_cool_type_enum: - name: heat_cool_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - tillage_enum: - name: tillage_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - hcr_geol_age_enum: - name: hcr_geol_age_enum + badlands: + text: badlands + cities: + text: cities + conifers: + text: conifers + annotations: + originally: + tag: originally + value: conifers (e.g. pine,spruce,fir,cypress) + examples: + - value: cypress + - value: fir + - value: pine + - value: spruce + crop trees: + text: crop trees + annotations: + originally: + tag: originally + value: crop trees (nuts,fruit,christmas trees,nursery trees) + examples: + - value: christmas trees + - value: fruit + - value: nursery trees + - value: nuts + farmstead: + text: farmstead + gravel: + text: gravel + hardwoods: + text: hardwoods + annotations: + originally: + tag: originally + value: hardwoods (e.g. oak,hickory,elm,aspen) + examples: + - value: aspen + - value: elm + - value: hickory + - value: oak + hayland: + text: hayland + horticultural plants: + text: horticultural plants + annotations: + originally: + tag: originally + value: horticultural plants (e.g. tulips) + examples: + - value: tulips + industrial areas: + text: industrial areas + intermixed hardwood and conifers: + text: intermixed hardwood and conifers + marshlands: + text: marshlands + annotations: + originally: + tag: originally + value: marshlands (grass,sedges,rushes) + examples: + - value: grass + - value: rushes + - value: sedgees + meadows: + text: meadows + annotations: + originally: + tag: originally + value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) + examples: + - value: alfalfa + - value: bromegrass + - value: fescue + - value: grasses + - value: timothy + mines/quarries: + text: mines/quarries + mudflats: + text: mudflats + oil waste areas: + text: oil waste areas + pastureland: + text: pastureland + annotations: + originally: + tag: originally + value: pastureland (grasslands used for livestock grazing) + comments: + - grasslands used for livestock grazing + permanent snow or ice: + text: permanent snow or ice + rainforest: + text: rainforest + annotations: + originally: + tag: originally + value: rainforest (evergreen forest receiving greater than 406 cm annual + rainfall) + comments: + - evergreen forest receiving greater than 406 cm annual rainfall + rangeland: + text: rangeland + roads/railroads: + text: roads/railroads + rock: + text: rock + row crops: + text: row crops + saline seeps: + text: saline seeps + salt flats: + text: salt flats + sand: + text: sand + shrub crops: + text: shrub crops + annotations: + originally: + tag: originally + value: shrub crops (blueberries,nursery ornamentals,filberts) + examples: + - value: blueberries + - value: filberts + - value: nursery ornamentals + shrub land: + text: shrub land + annotations: + originally: + tag: originally + value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) + examples: + - value: creosote bush + - value: eucalyptus + - value: mesquite + - value: sage-brush + - value: shrub oak + small grains: + text: small grains + successional shrub land: + text: successional shrub land + annotations: + originally: + tag: originally + value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub + dogwoods,blackberries) + examples: + - value: blackberries + - value: chokecherry + - value: hazels + - value: shrub dogwoods + - value: sumacs + - value: tree saplings + swamp: + text: swamp + annotations: + originally: + tag: originally + value: swamp (permanent or semi-permanent water body dominated by woody + plants) + comments: + - permanent or semi-permanent water body dominated by woody plants + tropical: + text: tropical + annotations: + originally: + tag: originally + value: tropical (e.g. mangrove,palms) + examples: + - value: mangrove + - value: palms + tundra: + text: tundra + annotations: + originally: + tag: originally + value: tundra (mosses,lichens) + examples: + - value: lichens + - value: mosses + vegetable crops: + text: vegetable crops + vine crops: + text: vine crops + annotations: + originally: + tag: originally + value: vine crops (grapes) + examples: + - value: grapes + window_horiz_pos_enum: + name: window_horiz_pos_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - samp_subtype_enum: - name: samp_subtype_enum + left: + text: left + middle: + text: middle + right: + text: right + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other + permissible_values: + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat room_connected_enum: name: room_connected_enum from_schema: https://w3id.org/nmdc/nmdc @@ -3372,124 +3356,140 @@ enums: text: office stairwell: text: stairwell - floor_cond_enum: - name: floor_cond_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - hc_produced_enum: - name: hc_produced_enum + freq_clean_enum: + name: freq_clean_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Oil: - text: Oil - Gas-Condensate: - text: Gas-Condensate - Gas: - text: Gas - Bitumen: - text: Bitumen - Coalbed Methane: - text: Coalbed Methane + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually other: text: other - door_type_wood_enum: - name: door_type_wood_enum + building_setting_enum: + name: building_setting_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - hcr_enum: - name: hcr_enum + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + ext_window_orient_enum: + name: ext_window_orient_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - biotic_relationship_enum: - name: biotic_relationship_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + handidness_enum: + name: handidness_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - door_move_enum: - name: door_move_enum + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + host_sex_enum: + name: host_sex_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - room_condt_enum: - name: room_condt_enum + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + build_occup_type_enum: + name: build_occup_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + weekday_enum: + name: weekday_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + train_stat_loc_enum: + name: train_stat_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside slots: model: name: model @@ -5045,9 +5045,12 @@ slots: websites: name: websites description: A list of websites that are associated with the entity. + comments: + - DOIs should not be included as websites. Instead, use the associated_dois slot. from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string + pattern: ^[Hh][Tt][Tt][Pp][Ss]?:\/\/(?!.*[Dd][Oo][Ii]\.[Oo][Rr][Gg]).*$ highest_similarity_score: name: highest_similarity_score todos: @@ -17703,23 +17706,17 @@ slots: slot_uri: MIXS:0000156 multivalued: false range: QuantityValue - nucleic acid sequence source field: - name: nucleic acid sequence source field - from_schema: https://w3id.org/nmdc/nmdc - abstract: true has raw value: name: has raw value from_schema: https://w3id.org/nmdc/nmdc string_serialization: '{has numeric value} {has unit}' owner: QuantityValue - environment field: - name: environment field - description: field describing environmental aspect of a sample + nucleic acid sequence source field: + name: nucleic acid sequence source field from_schema: https://w3id.org/nmdc/nmdc abstract: true - core field: - name: core field - description: basic fields + sequencing field: + name: sequencing field from_schema: https://w3id.org/nmdc/nmdc abstract: true has numeric value: @@ -17727,13 +17724,19 @@ slots: from_schema: https://w3id.org/nmdc/nmdc owner: QuantityValue range: double + core field: + name: core field + description: basic fields + from_schema: https://w3id.org/nmdc/nmdc + abstract: true has unit: name: has unit description: Example "m" from_schema: https://w3id.org/nmdc/nmdc owner: QuantityValue - sequencing field: - name: sequencing field + environment field: + name: environment field + description: field describing environmental aspect of a sample from_schema: https://w3id.org/nmdc/nmdc abstract: true investigation field: diff --git a/project/nmdc_schema_generated.yaml b/project/nmdc_schema_generated.yaml index d163cab8cd..71ecd9e611 100644 --- a/project/nmdc_schema_generated.yaml +++ b/project/nmdc_schema_generated.yaml @@ -11,7 +11,7 @@ notes: - not importing any MIxS terms where the relationship between the name (SCN) and the id isn't 1:1 id: https://w3id.org/nmdc/nmdc -version: v9.1.0 +version: v9.2.0 license: https://creativecommons.org/publicdomain/zero/1.0/ prefixes: FMA: @@ -1439,50 +1439,164 @@ enums: text: soil water_extract_soil: text: water_extract_soil - substructure_type_enum: - name: substructure_type_enum + sr_kerog_type_enum: + name: sr_kerog_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement - window_cover_enum: - name: window_cover_enum + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + mech_struc_enum: + name: mech_struc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - room_loc_enum: - name: room_loc_enum + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + filter_type_enum: + name: filter_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - door_type_metal_enum: - name: door_type_metal_enum + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + oxy_stat_samp_enum: + name: oxy_stat_samp_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate + aerobic: + text: aerobic + anaerobic: + text: anaerobic + other: + text: other + window_type_enum: + name: window_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + arch_struc_enum: + name: arch_struc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + quad_pos_enum: + name: quad_pos_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + hcr_geol_age_enum: + name: hcr_geol_age_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other occup_document_enum: name: occup_document_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1495,58 +1609,178 @@ enums: text: manual count videos: text: videos - biol_stat_enum: - name: biol_stat_enum + plant_growth_med_enum: + name: plant_growth_med_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - build_docs_enum: - name: build_docs_enum + other artificial liquid medium: + text: other artificial liquid medium + other artificial solid medium: + text: other artificial solid medium + peat moss: + text: peat moss + perlite: + text: perlite + pumice: + text: pumice + sand: + text: sand + soil: + text: soil + vermiculite: + text: vermiculite + water: + text: water + ceil_cond_enum: + name: ceil_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - drawings_enum: - name: drawings_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + gender_restroom_enum: + name: gender_restroom_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + all gender: + text: all gender + female: + text: female + gender neurtral: + text: gender neurtral + male: + text: male + male and female: + text: male and female + unisex: + text: unisex + vis_media_enum: + name: vis_media_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + photos: + text: photos + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans + door_type_wood_enum: + name: door_type_wood_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + fao_class_enum: + name: fao_class_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Acrisols: + text: Acrisols + Andosols: + text: Andosols + Arenosols: + text: Arenosols + Cambisols: + text: Cambisols + Chernozems: + text: Chernozems + Ferralsols: + text: Ferralsols + Fluvisols: + text: Fluvisols + Gleysols: + text: Gleysols + Greyzems: + text: Greyzems + Gypsisols: + text: Gypsisols + Histosols: + text: Histosols + Kastanozems: + text: Kastanozems + Lithosols: + text: Lithosols + Luvisols: + text: Luvisols + Nitosols: + text: Nitosols + Phaeozems: + text: Phaeozems + Planosols: + text: Planosols + Podzols: + text: Podzols + Podzoluvisols: + text: Podzoluvisols + Rankers: + text: Rankers + Regosols: + text: Regosols + Rendzinas: + text: Rendzinas + Solonchaks: + text: Solonchaks + Solonetz: + text: Solonetz + Vertisols: + text: Vertisols + Yermosols: + text: Yermosols + soil_horizon_enum: + name: soil_horizon_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost + M horizon: + text: M horizon + specific_enum: + name: specific_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: operation: @@ -1559,118 +1793,50 @@ enums: text: bid design: text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - ceil_texture_enum: - name: ceil_texture_enum + photos: + text: photos + tidal_stage_enum: + name: tidal_stage_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - sr_dep_env_enum: - name: sr_dep_env_enum + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + int_wall_cond_enum: + name: int_wall_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - light_type_enum: - name: light_type_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - rel_samp_loc_enum: - name: rel_samp_loc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - drainage_class_enum: - name: drainage_class_enum + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + drainage_class_enum: + name: drainage_class_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: very poorly: @@ -1685,6 +1851,22 @@ enums: text: well excessively drained: text: excessively drained + wall_const_type_enum: + name: wall_const_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive samp_weather_enum: name: samp_weather_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1707,180 +1889,122 @@ enums: text: sunny windy: text: windy - wall_const_type_enum: - name: wall_const_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - arch_struc_enum: - name: arch_struc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - window_vert_pos_enum: - name: window_vert_pos_enum + train_line_enum: + name: train_line_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - window_mat_enum: - name: window_mat_enum + red: + text: red + green: + text: green + orange: + text: orange + ceil_type_enum: + name: ceil_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - clad: - text: clad - fiberglass: - text: fiberglass - metal: - text: metal - vinyl: - text: vinyl - wood: - text: wood - train_stop_loc_enum: - name: train_stop_loc_enum + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + samp_dis_stage_enum: + name: samp_dis_stage_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - samp_capt_status_enum: - name: samp_capt_status_enum + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other + samp_md_enum: + name: samp_md_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL other: text: other - floor_finish_mat_enum: - name: floor_finish_mat_enum + door_comp_type_enum: + name: door_comp_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - tile: - text: tile - wood strip or parquet: - text: wood strip or parquet - carpet: - text: carpet - rug: - text: rug - laminate wood: - text: laminate wood - lineoleum: - text: lineoleum - vinyl composition tile: - text: vinyl composition tile - sheet vinyl: - text: sheet vinyl - stone: - text: stone - bamboo: - text: bamboo - cork: - text: cork - terrazo: - text: terrazo - concrete: - text: concrete - none: - text: none - sealed: - text: sealed - clear finish: - text: clear finish - paint: - text: paint - none or unfinished: - text: none or unfinished - plant_growth_med_enum: - name: plant_growth_med_enum + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic + window_loc_enum: + name: window_loc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - other artificial liquid medium: - text: other artificial liquid medium - other artificial solid medium: - text: other artificial solid medium - peat moss: - text: peat moss - perlite: - text: perlite - pumice: - text: pumice - sand: - text: sand - soil: - text: soil - vermiculite: - text: vermiculite - water: - text: water - oxy_stat_samp_enum: - name: oxy_stat_samp_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + door_loc_enum: + name: door_loc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - aerobic: - text: aerobic - anaerobic: - text: anaerobic - other: - text: other - window_cond_enum: - name: window_cond_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + water_feat_type_enum: + name: water_feat_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - wall_texture_enum: - name: wall_texture_enum + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall + ceil_texture_enum: + name: ceil_texture_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: crows feet: text: crows feet crows-foot stomp: text: crows-foot stomp - ? '' - : text: '' double skip: text: double skip hawk and trowel: @@ -1903,32 +2027,46 @@ enums: text: stomp knockdown swirl: text: swirl - profile_position_enum: - name: profile_position_enum + growth_habit_enum: + name: growth_habit_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - wall_loc_enum: - name: wall_loc_enum + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + shading_device_type_enum: + name: shading_device_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning room_type_enum: name: room_type_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1983,6 +2121,92 @@ enums: text: cafe warehouse: text: warehouse + light_type_enum: + name: light_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + build_docs_enum: + name: build_docs_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown door_cond_enum: name: door_cond_enum from_schema: https://w3id.org/nmdc/nmdc @@ -1997,70 +2221,218 @@ enums: text: rupture visible wear: text: visible wear - organism_count_enum: - name: organism_count_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - ATP: - text: ATP - MPN: - text: MPN - other: - text: other - host_sex_enum: - name: host_sex_enum + room_condt_enum: + name: room_condt_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - indoor_surf_enum: - name: indoor_surf_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + door_type_metal_enum: + name: door_type_metal_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - soil_horizon_enum: - name: soil_horizon_enum + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate + tillage_enum: + name: tillage_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - M horizon: - text: M horizon - ext_window_orient_enum: - name: ext_window_orient_enum + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + sr_lithology_enum: + name: sr_lithology_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + door_move_enum: + name: door_move_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + window_cover_enum: + name: window_cover_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + lithology_enum: + name: lithology_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic + other: + text: other + samp_floor_enum: + name: samp_floor_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + door_direct_enum: + name: door_direct_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + heat_deliv_loc_enum: + name: heat_deliv_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine + other: + text: other + sr_geol_age_enum: + name: sr_geol_age_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + ext_wall_orient_enum: + name: ext_wall_orient_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: north: @@ -2079,271 +2451,68 @@ enums: text: southwest northwest: text: northwest - cur_land_use_enum: - name: cur_land_use_enum + floor_water_mold_enum: + name: floor_water_mold_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - badlands: - text: badlands - cities: - text: cities - conifers: - text: conifers - annotations: - originally: - tag: originally - value: conifers (e.g. pine,spruce,fir,cypress) - examples: - - value: cypress - - value: fir - - value: pine - - value: spruce - crop trees: - text: crop trees - annotations: - originally: - tag: originally - value: crop trees (nuts,fruit,christmas trees,nursery trees) - examples: - - value: christmas trees - - value: fruit - - value: nursery trees - - value: nuts - farmstead: - text: farmstead - gravel: - text: gravel - hardwoods: - text: hardwoods - annotations: - originally: - tag: originally - value: hardwoods (e.g. oak,hickory,elm,aspen) - examples: - - value: aspen - - value: elm - - value: hickory - - value: oak - hayland: - text: hayland - horticultural plants: - text: horticultural plants - annotations: - originally: - tag: originally - value: horticultural plants (e.g. tulips) - examples: - - value: tulips - industrial areas: - text: industrial areas - intermixed hardwood and conifers: - text: intermixed hardwood and conifers - marshlands: - text: marshlands - annotations: - originally: - tag: originally - value: marshlands (grass,sedges,rushes) - examples: - - value: grass - - value: rushes - - value: sedgees - meadows: - text: meadows - annotations: - originally: - tag: originally - value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) - examples: - - value: alfalfa - - value: bromegrass - - value: fescue - - value: grasses - - value: timothy - mines/quarries: - text: mines/quarries - mudflats: - text: mudflats - oil waste areas: - text: oil waste areas - pastureland: - text: pastureland - annotations: - originally: - tag: originally - value: pastureland (grasslands used for livestock grazing) - comments: - - grasslands used for livestock grazing - permanent snow or ice: - text: permanent snow or ice - rainforest: - text: rainforest - annotations: - originally: - tag: originally - value: rainforest (evergreen forest receiving greater than 406 cm annual - rainfall) - comments: - - evergreen forest receiving greater than 406 cm annual rainfall - rangeland: - text: rangeland - roads/railroads: - text: roads/railroads - rock: - text: rock - row crops: - text: row crops - saline seeps: - text: saline seeps - salt flats: - text: salt flats - sand: - text: sand - shrub crops: - text: shrub crops - annotations: - originally: - tag: originally - value: shrub crops (blueberries,nursery ornamentals,filberts) - examples: - - value: blueberries - - value: filberts - - value: nursery ornamentals - shrub land: - text: shrub land - annotations: - originally: - tag: originally - value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) - examples: - - value: creosote bush - - value: eucalyptus - - value: mesquite - - value: sage-brush - - value: shrub oak - small grains: - text: small grains - successional shrub land: - text: successional shrub land - annotations: - originally: - tag: originally - value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub - dogwoods,blackberries) - examples: - - value: blackberries - - value: chokecherry - - value: hazels - - value: shrub dogwoods - - value: sumacs - - value: tree saplings - swamp: - text: swamp - annotations: - originally: - tag: originally - value: swamp (permanent or semi-permanent water body dominated by woody - plants) - comments: - - permanent or semi-permanent water body dominated by woody plants - tropical: - text: tropical - annotations: - originally: - tag: originally - value: tropical (e.g. mangrove,palms) - examples: - - value: mangrove - - value: palms - tundra: - text: tundra - annotations: - originally: - tag: originally - value: tundra (mosses,lichens) - examples: - - value: lichens - - value: mosses - vegetable crops: - text: vegetable crops - vine crops: - text: vine crops - annotations: - originally: - tag: originally - value: vine crops (grapes) - examples: - - value: grapes - fao_class_enum: - name: fao_class_enum + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + window_cond_enum: + name: window_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Acrisols: - text: Acrisols - Andosols: - text: Andosols - Arenosols: - text: Arenosols - Cambisols: - text: Cambisols - Chernozems: - text: Chernozems - Ferralsols: - text: Ferralsols - Fluvisols: - text: Fluvisols - Gleysols: - text: Gleysols - Greyzems: - text: Greyzems - Gypsisols: - text: Gypsisols - Histosols: - text: Histosols - Kastanozems: - text: Kastanozems - Lithosols: - text: Lithosols - Luvisols: - text: Luvisols - Nitosols: - text: Nitosols - Phaeozems: - text: Phaeozems - Planosols: - text: Planosols - Podzols: - text: Podzols - Podzoluvisols: - text: Podzoluvisols - Rankers: - text: Rankers - Regosols: - text: Regosols - Rendzinas: - text: Rendzinas - Solonchaks: - text: Solonchaks - Solonetz: - text: Solonetz - Vertisols: - text: Vertisols - Yermosols: - text: Yermosols - sr_lithology_enum: - name: sr_lithology_enum + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + shading_device_cond_enum: + name: shading_device_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous - other: - text: other + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + wall_loc_enum: + name: wall_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west door_mat_enum: name: door_mat_enum from_schema: https://w3id.org/nmdc/nmdc @@ -2368,520 +2537,452 @@ enums: text: wood wood/plastic composite: text: wood/plastic composite - ceil_finish_mat_enum: - name: ceil_finish_mat_enum + plant_sex_enum: + name: plant_sex_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - furniture_enum: - name: furniture_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - growth_habit_enum: - name: growth_habit_enum + Androdioecious: + text: Androdioecious + Androecious: + text: Androecious + Androgynous: + text: Androgynous + Androgynomonoecious: + text: Androgynomonoecious + Andromonoecious: + text: Andromonoecious + Bisexual: + text: Bisexual + Dichogamous: + text: Dichogamous + Diclinous: + text: Diclinous + Dioecious: + text: Dioecious + Gynodioecious: + text: Gynodioecious + Gynoecious: + text: Gynoecious + Gynomonoecious: + text: Gynomonoecious + Hermaphroditic: + text: Hermaphroditic + Imperfect: + text: Imperfect + Monoclinous: + text: Monoclinous + Monoecious: + text: Monoecious + Perfect: + text: Perfect + Polygamodioecious: + text: Polygamodioecious + Polygamomonoecious: + text: Polygamomonoecious + Polygamous: + text: Polygamous + Protandrous: + text: Protandrous + Protogynous: + text: Protogynous + Subandroecious: + text: Subandroecious + Subdioecious: + text: Subdioecious + Subgynoecious: + text: Subgynoecious + Synoecious: + text: Synoecious + Trimonoecious: + text: Trimonoecious + Trioecious: + text: Trioecious + Unisexual: + text: Unisexual + wall_texture_enum: + name: wall_texture_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate - door_type_enum: - name: door_type_enum + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + surf_material_enum: + name: surf_material_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - composite: - text: composite + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass metal: text: metal - wooden: - text: wooden - gender_restroom_enum: - name: gender_restroom_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - all gender: - text: all gender - female: - text: female - gender neurtral: - text: gender neurtral - male: - text: male - male and female: - text: male and female - unisex: - text: unisex - door_comp_type_enum: - name: door_comp_type_enum + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + biotic_relationship_enum: + name: biotic_relationship_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic - freq_clean_enum: - name: freq_clean_enum + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + samp_subtype_enum: + name: samp_subtype_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other - samp_collect_point_enum: - name: samp_collect_point_enum + hcr_enum: + name: hcr_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir other: text: other - building_setting_enum: - name: building_setting_enum + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - handidness_enum: - name: handidness_enum + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + season_use_enum: + name: season_use_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - window_horiz_pos_enum: - name: window_horiz_pos_enum + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + floor_struc_enum: + name: floor_struc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - left: - text: left - middle: - text: middle - right: - text: right - door_loc_enum: - name: door_loc_enum + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + depos_env_enum: + name: depos_env_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - ext_wall_orient_enum: - name: ext_wall_orient_enum + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic + other: + text: other + room_loc_enum: + name: room_loc_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - weekday_enum: - name: weekday_enum + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + profile_position_enum: + name: profile_position_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - lithology_enum: - name: lithology_enum + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + indoor_space_enum: + name: indoor_space_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample other: text: other - ceil_type_enum: - name: ceil_type_enum + furniture_enum: + name: furniture_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - floor_water_mold_enum: - name: floor_water_mold_enum + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + hc_produced_enum: + name: hc_produced_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - plant_sex_enum: - name: plant_sex_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - Androdioecious: - text: Androdioecious - Androecious: - text: Androecious - Androgynous: - text: Androgynous - Androgynomonoecious: - text: Androgynomonoecious - Andromonoecious: - text: Andromonoecious - Bisexual: - text: Bisexual - Dichogamous: - text: Dichogamous - Diclinous: - text: Diclinous - Dioecious: - text: Dioecious - Gynodioecious: - text: Gynodioecious - Gynoecious: - text: Gynoecious - Gynomonoecious: - text: Gynomonoecious - Hermaphroditic: - text: Hermaphroditic - Imperfect: - text: Imperfect - Monoclinous: - text: Monoclinous - Monoecious: - text: Monoecious - Perfect: - text: Perfect - Polygamodioecious: - text: Polygamodioecious - Polygamomonoecious: - text: Polygamomonoecious - Polygamous: - text: Polygamous - Protandrous: - text: Protandrous - Protogynous: - text: Protogynous - Subandroecious: - text: Subandroecious - Subdioecious: - text: Subdioecious - Subgynoecious: - text: Subgynoecious - Synoecious: - text: Synoecious - Trimonoecious: - text: Trimonoecious - Trioecious: - text: Trioecious - Unisexual: - text: Unisexual - int_wall_cond_enum: - name: int_wall_cond_enum + Oil: + text: Oil + Gas-Condensate: + text: Gas-Condensate + Gas: + text: Gas + Bitumen: + text: Bitumen + Coalbed Methane: + text: Coalbed Methane + other: + text: other + biol_stat_enum: + name: biol_stat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - surf_material_enum: - name: surf_material_enum + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_mat_enum: + name: window_mat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass + clad: + text: clad + fiberglass: + text: fiberglass metal: text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile vinyl: text: vinyl wood: text: wood - indoor_space_enum: - name: indoor_space_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator - season_use_enum: - name: season_use_enum + room_samp_pos_enum: + name: room_samp_pos_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - tidal_stage_enum: - name: tidal_stage_enum + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + surf_air_cont_enum: + name: surf_air_cont_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - specific_enum: - name: specific_enum + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + door_type_enum: + name: door_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - photos: - text: photos - vis_media_enum: - name: vis_media_enum + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + organism_count_enum: + name: organism_count_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry - shading_device_type_enum: - name: shading_device_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning + ATP: + text: ATP + MPN: + text: MPN + other: + text: other sediment_type_enum: name: sediment_type_enum from_schema: https://w3id.org/nmdc/nmdc @@ -2894,44 +2995,36 @@ enums: text: hydrogenous lithogenous: text: lithogenous - window_loc_enum: - name: window_loc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - heat_deliv_loc_enum: - name: heat_deliv_loc_enum + substructure_type_enum: + name: substructure_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - train_stat_loc_enum: - name: train_stat_loc_enum + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + indoor_surf_enum: + name: indoor_surf_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall wall_surf_treatment_enum: name: wall_surf_treatment_enum from_schema: https://w3id.org/nmdc/nmdc @@ -2948,48 +3041,68 @@ enums: text: stucco fabric: text: fabric - quad_pos_enum: - name: quad_pos_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - sr_kerog_type_enum: - name: sr_kerog_type_enum + drawings_enum: + name: drawings_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - water_feat_type_enum: - name: water_feat_type_enum + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + floor_finish_mat_enum: + name: floor_finish_mat_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - ceil_cond_enum: - name: ceil_cond_enum + tile: + text: tile + wood strip or parquet: + text: wood strip or parquet + carpet: + text: carpet + rug: + text: rug + laminate wood: + text: laminate wood + lineoleum: + text: lineoleum + vinyl composition tile: + text: vinyl composition tile + sheet vinyl: + text: sheet vinyl + stone: + text: stone + bamboo: + text: bamboo + cork: + text: cork + terrazo: + text: terrazo + concrete: + text: concrete + none: + text: none + sealed: + text: sealed + clear finish: + text: clear finish + paint: + text: paint + none or unfinished: + text: none or unfinished + floor_cond_enum: + name: floor_cond_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: new: @@ -3002,350 +3115,221 @@ enums: text: damaged rupture: text: rupture - samp_md_enum: - name: samp_md_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - train_line_enum: - name: train_line_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - samp_dis_stage_enum: - name: samp_dis_stage_enum + cur_land_use_enum: + name: cur_land_use_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other - depos_env_enum: - name: depos_env_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - mech_struc_enum: - name: mech_struc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus - samp_floor_enum: - name: samp_floor_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby - sr_geol_age_enum: - name: sr_geol_age_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - window_type_enum: - name: window_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window - build_occup_type_enum: - name: build_occup_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - surf_air_cont_enum: - name: surf_air_cont_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - door_direct_enum: - name: door_direct_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - filter_type_enum: - name: filter_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - floor_struc_enum: - name: floor_struc_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed - concrete: - text: concrete - heat_cool_type_enum: - name: heat_cool_type_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - tillage_enum: - name: tillage_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - hcr_geol_age_enum: - name: hcr_geol_age_enum + badlands: + text: badlands + cities: + text: cities + conifers: + text: conifers + annotations: + originally: + tag: originally + value: conifers (e.g. pine,spruce,fir,cypress) + examples: + - value: cypress + - value: fir + - value: pine + - value: spruce + crop trees: + text: crop trees + annotations: + originally: + tag: originally + value: crop trees (nuts,fruit,christmas trees,nursery trees) + examples: + - value: christmas trees + - value: fruit + - value: nursery trees + - value: nuts + farmstead: + text: farmstead + gravel: + text: gravel + hardwoods: + text: hardwoods + annotations: + originally: + tag: originally + value: hardwoods (e.g. oak,hickory,elm,aspen) + examples: + - value: aspen + - value: elm + - value: hickory + - value: oak + hayland: + text: hayland + horticultural plants: + text: horticultural plants + annotations: + originally: + tag: originally + value: horticultural plants (e.g. tulips) + examples: + - value: tulips + industrial areas: + text: industrial areas + intermixed hardwood and conifers: + text: intermixed hardwood and conifers + marshlands: + text: marshlands + annotations: + originally: + tag: originally + value: marshlands (grass,sedges,rushes) + examples: + - value: grass + - value: rushes + - value: sedgees + meadows: + text: meadows + annotations: + originally: + tag: originally + value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) + examples: + - value: alfalfa + - value: bromegrass + - value: fescue + - value: grasses + - value: timothy + mines/quarries: + text: mines/quarries + mudflats: + text: mudflats + oil waste areas: + text: oil waste areas + pastureland: + text: pastureland + annotations: + originally: + tag: originally + value: pastureland (grasslands used for livestock grazing) + comments: + - grasslands used for livestock grazing + permanent snow or ice: + text: permanent snow or ice + rainforest: + text: rainforest + annotations: + originally: + tag: originally + value: rainforest (evergreen forest receiving greater than 406 cm annual + rainfall) + comments: + - evergreen forest receiving greater than 406 cm annual rainfall + rangeland: + text: rangeland + roads/railroads: + text: roads/railroads + rock: + text: rock + row crops: + text: row crops + saline seeps: + text: saline seeps + salt flats: + text: salt flats + sand: + text: sand + shrub crops: + text: shrub crops + annotations: + originally: + tag: originally + value: shrub crops (blueberries,nursery ornamentals,filberts) + examples: + - value: blueberries + - value: filberts + - value: nursery ornamentals + shrub land: + text: shrub land + annotations: + originally: + tag: originally + value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) + examples: + - value: creosote bush + - value: eucalyptus + - value: mesquite + - value: sage-brush + - value: shrub oak + small grains: + text: small grains + successional shrub land: + text: successional shrub land + annotations: + originally: + tag: originally + value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub + dogwoods,blackberries) + examples: + - value: blackberries + - value: chokecherry + - value: hazels + - value: shrub dogwoods + - value: sumacs + - value: tree saplings + swamp: + text: swamp + annotations: + originally: + tag: originally + value: swamp (permanent or semi-permanent water body dominated by woody + plants) + comments: + - permanent or semi-permanent water body dominated by woody plants + tropical: + text: tropical + annotations: + originally: + tag: originally + value: tropical (e.g. mangrove,palms) + examples: + - value: mangrove + - value: palms + tundra: + text: tundra + annotations: + originally: + tag: originally + value: tundra (mosses,lichens) + examples: + - value: lichens + - value: mosses + vegetable crops: + text: vegetable crops + vine crops: + text: vine crops + annotations: + originally: + tag: originally + value: vine crops (grapes) + examples: + - value: grapes + window_horiz_pos_enum: + name: window_horiz_pos_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - samp_subtype_enum: - name: samp_subtype_enum + left: + text: left + middle: + text: middle + right: + text: right + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other + permissible_values: + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat room_connected_enum: name: room_connected_enum from_schema: https://w3id.org/nmdc/nmdc @@ -3372,124 +3356,140 @@ enums: text: office stairwell: text: stairwell - floor_cond_enum: - name: floor_cond_enum - from_schema: https://w3id.org/nmdc/nmdc - permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - hc_produced_enum: - name: hc_produced_enum + freq_clean_enum: + name: freq_clean_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Oil: - text: Oil - Gas-Condensate: - text: Gas-Condensate - Gas: - text: Gas - Bitumen: - text: Bitumen - Coalbed Methane: - text: Coalbed Methane + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually other: text: other - door_type_wood_enum: - name: door_type_wood_enum + building_setting_enum: + name: building_setting_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - hcr_enum: - name: hcr_enum + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + ext_window_orient_enum: + name: ext_window_orient_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - biotic_relationship_enum: - name: biotic_relationship_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + handidness_enum: + name: handidness_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - door_move_enum: - name: door_move_enum + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + host_sex_enum: + name: host_sex_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - room_condt_enum: - name: room_condt_enum + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + build_occup_type_enum: + name: build_occup_type_enum from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + weekday_enum: + name: weekday_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + train_stat_loc_enum: + name: train_stat_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside slots: model: name: model @@ -5045,9 +5045,12 @@ slots: websites: name: websites description: A list of websites that are associated with the entity. + comments: + - DOIs should not be included as websites. Instead, use the associated_dois slot. from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string + pattern: ^[Hh][Tt][Tt][Pp][Ss]?:\/\/(?!.*[Dd][Oo][Ii]\.[Oo][Rr][Gg]).*$ highest_similarity_score: name: highest_similarity_score todos: @@ -17703,23 +17706,17 @@ slots: slot_uri: MIXS:0000156 multivalued: false range: QuantityValue - nucleic acid sequence source field: - name: nucleic acid sequence source field - from_schema: https://w3id.org/nmdc/nmdc - abstract: true has raw value: name: has raw value from_schema: https://w3id.org/nmdc/nmdc string_serialization: '{has numeric value} {has unit}' owner: QuantityValue - environment field: - name: environment field - description: field describing environmental aspect of a sample + nucleic acid sequence source field: + name: nucleic acid sequence source field from_schema: https://w3id.org/nmdc/nmdc abstract: true - core field: - name: core field - description: basic fields + sequencing field: + name: sequencing field from_schema: https://w3id.org/nmdc/nmdc abstract: true has numeric value: @@ -17727,13 +17724,19 @@ slots: from_schema: https://w3id.org/nmdc/nmdc owner: QuantityValue range: double + core field: + name: core field + description: basic fields + from_schema: https://w3id.org/nmdc/nmdc + abstract: true has unit: name: has unit description: Example "m" from_schema: https://w3id.org/nmdc/nmdc owner: QuantityValue - sequencing field: - name: sequencing field + environment field: + name: environment field + description: field describing environmental aspect of a sample from_schema: https://w3id.org/nmdc/nmdc abstract: true investigation field: diff --git a/project/nmdc_schema_merged.yaml b/project/nmdc_schema_merged.yaml index 9bbe8b80ad..9ff5a9eda8 100644 --- a/project/nmdc_schema_merged.yaml +++ b/project/nmdc_schema_merged.yaml @@ -11,7 +11,7 @@ notes: - not importing any MIxS terms where the relationship between the name (SCN) and the id isn't 1:1 id: https://w3id.org/nmdc/nmdc -version: v9.1.0 +version: v9.2.0 license: https://creativecommons.org/publicdomain/zero/1.0/ prefixes: FMA: @@ -1439,50 +1439,164 @@ enums: text: soil water_extract_soil: text: water_extract_soil - substructure_type_enum: - name: substructure_type_enum + sr_kerog_type_enum: + name: sr_kerog_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement - window_cover_enum: - name: window_cover_enum + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + mech_struc_enum: + name: mech_struc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - room_loc_enum: - name: room_loc_enum + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + filter_type_enum: + name: filter_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - door_type_metal_enum: - name: door_type_metal_enum + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + oxy_stat_samp_enum: + name: oxy_stat_samp_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate + aerobic: + text: aerobic + anaerobic: + text: anaerobic + other: + text: other + window_type_enum: + name: window_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + arch_struc_enum: + name: arch_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + quad_pos_enum: + name: quad_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + hcr_geol_age_enum: + name: hcr_geol_age_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other occup_document_enum: name: occup_document_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -1495,58 +1609,178 @@ enums: text: manual count videos: text: videos - biol_stat_enum: - name: biol_stat_enum + plant_growth_med_enum: + name: plant_growth_med_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - build_docs_enum: - name: build_docs_enum + other artificial liquid medium: + text: other artificial liquid medium + other artificial solid medium: + text: other artificial solid medium + peat moss: + text: peat moss + perlite: + text: perlite + pumice: + text: pumice + sand: + text: sand + soil: + text: soil + vermiculite: + text: vermiculite + water: + text: water + ceil_cond_enum: + name: ceil_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - drawings_enum: - name: drawings_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + gender_restroom_enum: + name: gender_restroom_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + all gender: + text: all gender + female: + text: female + gender neurtral: + text: gender neurtral + male: + text: male + male and female: + text: male and female + unisex: + text: unisex + vis_media_enum: + name: vis_media_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + photos: + text: photos + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans + door_type_wood_enum: + name: door_type_wood_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + fao_class_enum: + name: fao_class_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Acrisols: + text: Acrisols + Andosols: + text: Andosols + Arenosols: + text: Arenosols + Cambisols: + text: Cambisols + Chernozems: + text: Chernozems + Ferralsols: + text: Ferralsols + Fluvisols: + text: Fluvisols + Gleysols: + text: Gleysols + Greyzems: + text: Greyzems + Gypsisols: + text: Gypsisols + Histosols: + text: Histosols + Kastanozems: + text: Kastanozems + Lithosols: + text: Lithosols + Luvisols: + text: Luvisols + Nitosols: + text: Nitosols + Phaeozems: + text: Phaeozems + Planosols: + text: Planosols + Podzols: + text: Podzols + Podzoluvisols: + text: Podzoluvisols + Rankers: + text: Rankers + Regosols: + text: Regosols + Rendzinas: + text: Rendzinas + Solonchaks: + text: Solonchaks + Solonetz: + text: Solonetz + Vertisols: + text: Vertisols + Yermosols: + text: Yermosols + soil_horizon_enum: + name: soil_horizon_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost + M horizon: + text: M horizon + specific_enum: + name: specific_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: operation: @@ -1559,118 +1793,50 @@ enums: text: bid design: text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - ceil_texture_enum: - name: ceil_texture_enum + photos: + text: photos + tidal_stage_enum: + name: tidal_stage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - sr_dep_env_enum: - name: sr_dep_env_enum + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + int_wall_cond_enum: + name: int_wall_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - light_type_enum: - name: light_type_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - rel_samp_loc_enum: - name: rel_samp_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - drainage_class_enum: - name: drainage_class_enum + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + drainage_class_enum: + name: drainage_class_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: very poorly: @@ -1685,6 +1851,22 @@ enums: text: well excessively drained: text: excessively drained + wall_const_type_enum: + name: wall_const_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive samp_weather_enum: name: samp_weather_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -1707,180 +1889,122 @@ enums: text: sunny windy: text: windy - wall_const_type_enum: - name: wall_const_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - arch_struc_enum: - name: arch_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - window_vert_pos_enum: - name: window_vert_pos_enum + train_line_enum: + name: train_line_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - window_mat_enum: - name: window_mat_enum + red: + text: red + green: + text: green + orange: + text: orange + ceil_type_enum: + name: ceil_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - clad: - text: clad - fiberglass: - text: fiberglass - metal: - text: metal - vinyl: - text: vinyl - wood: - text: wood - train_stop_loc_enum: - name: train_stop_loc_enum + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + samp_dis_stage_enum: + name: samp_dis_stage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - samp_capt_status_enum: - name: samp_capt_status_enum + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other + samp_md_enum: + name: samp_md_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL other: text: other - floor_finish_mat_enum: - name: floor_finish_mat_enum + door_comp_type_enum: + name: door_comp_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - tile: - text: tile - wood strip or parquet: - text: wood strip or parquet - carpet: - text: carpet - rug: - text: rug - laminate wood: - text: laminate wood - lineoleum: - text: lineoleum - vinyl composition tile: - text: vinyl composition tile - sheet vinyl: - text: sheet vinyl - stone: - text: stone - bamboo: - text: bamboo - cork: - text: cork - terrazo: - text: terrazo - concrete: - text: concrete - none: - text: none - sealed: - text: sealed - clear finish: - text: clear finish - paint: - text: paint - none or unfinished: - text: none or unfinished - plant_growth_med_enum: - name: plant_growth_med_enum + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic + window_loc_enum: + name: window_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - other artificial liquid medium: - text: other artificial liquid medium - other artificial solid medium: - text: other artificial solid medium - peat moss: - text: peat moss - perlite: - text: perlite - pumice: - text: pumice - sand: - text: sand - soil: - text: soil - vermiculite: - text: vermiculite - water: - text: water - oxy_stat_samp_enum: - name: oxy_stat_samp_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + door_loc_enum: + name: door_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - aerobic: - text: aerobic - anaerobic: - text: anaerobic - other: - text: other - window_cond_enum: - name: window_cond_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + water_feat_type_enum: + name: water_feat_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - wall_texture_enum: - name: wall_texture_enum + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall + ceil_texture_enum: + name: ceil_texture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: crows feet: text: crows feet crows-foot stomp: text: crows-foot stomp - ? '' - : text: '' double skip: text: double skip hawk and trowel: @@ -1903,32 +2027,46 @@ enums: text: stomp knockdown swirl: text: swirl - profile_position_enum: - name: profile_position_enum + growth_habit_enum: + name: growth_habit_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - wall_loc_enum: - name: wall_loc_enum + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + shading_device_type_enum: + name: shading_device_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning room_type_enum: name: room_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -1983,6 +2121,92 @@ enums: text: cafe warehouse: text: warehouse + light_type_enum: + name: light_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + build_docs_enum: + name: build_docs_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown door_cond_enum: name: door_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -1997,70 +2221,218 @@ enums: text: rupture visible wear: text: visible wear - organism_count_enum: - name: organism_count_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - ATP: - text: ATP - MPN: - text: MPN - other: - text: other - host_sex_enum: - name: host_sex_enum + room_condt_enum: + name: room_condt_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - indoor_surf_enum: - name: indoor_surf_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + door_type_metal_enum: + name: door_type_metal_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - soil_horizon_enum: - name: soil_horizon_enum + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate + tillage_enum: + name: tillage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - M horizon: - text: M horizon - ext_window_orient_enum: - name: ext_window_orient_enum + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + sr_lithology_enum: + name: sr_lithology_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + door_move_enum: + name: door_move_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + window_cover_enum: + name: window_cover_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + lithology_enum: + name: lithology_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic + other: + text: other + samp_floor_enum: + name: samp_floor_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + door_direct_enum: + name: door_direct_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + heat_deliv_loc_enum: + name: heat_deliv_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine + other: + text: other + sr_geol_age_enum: + name: sr_geol_age_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + ext_wall_orient_enum: + name: ext_wall_orient_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: north: @@ -2079,271 +2451,68 @@ enums: text: southwest northwest: text: northwest - cur_land_use_enum: - name: cur_land_use_enum + floor_water_mold_enum: + name: floor_water_mold_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - badlands: - text: badlands - cities: - text: cities - conifers: - text: conifers - annotations: - originally: - tag: originally - value: conifers (e.g. pine,spruce,fir,cypress) - examples: - - value: cypress - - value: fir - - value: pine - - value: spruce - crop trees: - text: crop trees - annotations: - originally: - tag: originally - value: crop trees (nuts,fruit,christmas trees,nursery trees) - examples: - - value: christmas trees - - value: fruit - - value: nursery trees - - value: nuts - farmstead: - text: farmstead - gravel: - text: gravel - hardwoods: - text: hardwoods - annotations: - originally: - tag: originally - value: hardwoods (e.g. oak,hickory,elm,aspen) - examples: - - value: aspen - - value: elm - - value: hickory - - value: oak - hayland: - text: hayland - horticultural plants: - text: horticultural plants - annotations: - originally: - tag: originally - value: horticultural plants (e.g. tulips) - examples: - - value: tulips - industrial areas: - text: industrial areas - intermixed hardwood and conifers: - text: intermixed hardwood and conifers - marshlands: - text: marshlands - annotations: - originally: - tag: originally - value: marshlands (grass,sedges,rushes) - examples: - - value: grass - - value: rushes - - value: sedgees - meadows: - text: meadows - annotations: - originally: - tag: originally - value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) - examples: - - value: alfalfa - - value: bromegrass - - value: fescue - - value: grasses - - value: timothy - mines/quarries: - text: mines/quarries - mudflats: - text: mudflats - oil waste areas: - text: oil waste areas - pastureland: - text: pastureland - annotations: - originally: - tag: originally - value: pastureland (grasslands used for livestock grazing) - comments: - - grasslands used for livestock grazing - permanent snow or ice: - text: permanent snow or ice - rainforest: - text: rainforest - annotations: - originally: - tag: originally - value: rainforest (evergreen forest receiving greater than 406 cm annual - rainfall) - comments: - - evergreen forest receiving greater than 406 cm annual rainfall - rangeland: - text: rangeland - roads/railroads: - text: roads/railroads - rock: - text: rock - row crops: - text: row crops - saline seeps: - text: saline seeps - salt flats: - text: salt flats - sand: - text: sand - shrub crops: - text: shrub crops - annotations: - originally: - tag: originally - value: shrub crops (blueberries,nursery ornamentals,filberts) - examples: - - value: blueberries - - value: filberts - - value: nursery ornamentals - shrub land: - text: shrub land - annotations: - originally: - tag: originally - value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) - examples: - - value: creosote bush - - value: eucalyptus - - value: mesquite - - value: sage-brush - - value: shrub oak - small grains: - text: small grains - successional shrub land: - text: successional shrub land - annotations: - originally: - tag: originally - value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub - dogwoods,blackberries) - examples: - - value: blackberries - - value: chokecherry - - value: hazels - - value: shrub dogwoods - - value: sumacs - - value: tree saplings - swamp: - text: swamp - annotations: - originally: - tag: originally - value: swamp (permanent or semi-permanent water body dominated by woody - plants) - comments: - - permanent or semi-permanent water body dominated by woody plants - tropical: - text: tropical - annotations: - originally: - tag: originally - value: tropical (e.g. mangrove,palms) - examples: - - value: mangrove - - value: palms - tundra: - text: tundra - annotations: - originally: - tag: originally - value: tundra (mosses,lichens) - examples: - - value: lichens - - value: mosses - vegetable crops: - text: vegetable crops - vine crops: - text: vine crops - annotations: - originally: - tag: originally - value: vine crops (grapes) - examples: - - value: grapes - fao_class_enum: - name: fao_class_enum + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + window_cond_enum: + name: window_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Acrisols: - text: Acrisols - Andosols: - text: Andosols - Arenosols: - text: Arenosols - Cambisols: - text: Cambisols - Chernozems: - text: Chernozems - Ferralsols: - text: Ferralsols - Fluvisols: - text: Fluvisols - Gleysols: - text: Gleysols - Greyzems: - text: Greyzems - Gypsisols: - text: Gypsisols - Histosols: - text: Histosols - Kastanozems: - text: Kastanozems - Lithosols: - text: Lithosols - Luvisols: - text: Luvisols - Nitosols: - text: Nitosols - Phaeozems: - text: Phaeozems - Planosols: - text: Planosols - Podzols: - text: Podzols - Podzoluvisols: - text: Podzoluvisols - Rankers: - text: Rankers - Regosols: - text: Regosols - Rendzinas: - text: Rendzinas - Solonchaks: - text: Solonchaks - Solonetz: - text: Solonetz - Vertisols: - text: Vertisols - Yermosols: - text: Yermosols - sr_lithology_enum: - name: sr_lithology_enum + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + shading_device_cond_enum: + name: shading_device_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous - other: - text: other + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + wall_loc_enum: + name: wall_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west door_mat_enum: name: door_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -2368,520 +2537,452 @@ enums: text: wood wood/plastic composite: text: wood/plastic composite - ceil_finish_mat_enum: - name: ceil_finish_mat_enum + plant_sex_enum: + name: plant_sex_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - furniture_enum: - name: furniture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - growth_habit_enum: - name: growth_habit_enum + Androdioecious: + text: Androdioecious + Androecious: + text: Androecious + Androgynous: + text: Androgynous + Androgynomonoecious: + text: Androgynomonoecious + Andromonoecious: + text: Andromonoecious + Bisexual: + text: Bisexual + Dichogamous: + text: Dichogamous + Diclinous: + text: Diclinous + Dioecious: + text: Dioecious + Gynodioecious: + text: Gynodioecious + Gynoecious: + text: Gynoecious + Gynomonoecious: + text: Gynomonoecious + Hermaphroditic: + text: Hermaphroditic + Imperfect: + text: Imperfect + Monoclinous: + text: Monoclinous + Monoecious: + text: Monoecious + Perfect: + text: Perfect + Polygamodioecious: + text: Polygamodioecious + Polygamomonoecious: + text: Polygamomonoecious + Polygamous: + text: Polygamous + Protandrous: + text: Protandrous + Protogynous: + text: Protogynous + Subandroecious: + text: Subandroecious + Subdioecious: + text: Subdioecious + Subgynoecious: + text: Subgynoecious + Synoecious: + text: Synoecious + Trimonoecious: + text: Trimonoecious + Trioecious: + text: Trioecious + Unisexual: + text: Unisexual + wall_texture_enum: + name: wall_texture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate - door_type_enum: - name: door_type_enum + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + surf_material_enum: + name: surf_material_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - composite: - text: composite + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass metal: text: metal - wooden: - text: wooden - gender_restroom_enum: - name: gender_restroom_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - all gender: - text: all gender - female: - text: female - gender neurtral: - text: gender neurtral - male: - text: male - male and female: - text: male and female - unisex: - text: unisex - door_comp_type_enum: - name: door_comp_type_enum + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + biotic_relationship_enum: + name: biotic_relationship_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic - freq_clean_enum: - name: freq_clean_enum + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + samp_subtype_enum: + name: samp_subtype_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other - samp_collect_point_enum: - name: samp_collect_point_enum + hcr_enum: + name: hcr_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir other: text: other - building_setting_enum: - name: building_setting_enum + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - handidness_enum: - name: handidness_enum + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + season_use_enum: + name: season_use_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - window_horiz_pos_enum: - name: window_horiz_pos_enum + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + floor_struc_enum: + name: floor_struc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - left: - text: left - middle: - text: middle - right: - text: right - door_loc_enum: - name: door_loc_enum + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + depos_env_enum: + name: depos_env_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - ext_wall_orient_enum: - name: ext_wall_orient_enum + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic + other: + text: other + room_loc_enum: + name: room_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - weekday_enum: - name: weekday_enum + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + profile_position_enum: + name: profile_position_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - lithology_enum: - name: lithology_enum + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + indoor_space_enum: + name: indoor_space_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample other: text: other - ceil_type_enum: - name: ceil_type_enum + furniture_enum: + name: furniture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - floor_water_mold_enum: - name: floor_water_mold_enum + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + hc_produced_enum: + name: hc_produced_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - plant_sex_enum: - name: plant_sex_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - Androdioecious: - text: Androdioecious - Androecious: - text: Androecious - Androgynous: - text: Androgynous - Androgynomonoecious: - text: Androgynomonoecious - Andromonoecious: - text: Andromonoecious - Bisexual: - text: Bisexual - Dichogamous: - text: Dichogamous - Diclinous: - text: Diclinous - Dioecious: - text: Dioecious - Gynodioecious: - text: Gynodioecious - Gynoecious: - text: Gynoecious - Gynomonoecious: - text: Gynomonoecious - Hermaphroditic: - text: Hermaphroditic - Imperfect: - text: Imperfect - Monoclinous: - text: Monoclinous - Monoecious: - text: Monoecious - Perfect: - text: Perfect - Polygamodioecious: - text: Polygamodioecious - Polygamomonoecious: - text: Polygamomonoecious - Polygamous: - text: Polygamous - Protandrous: - text: Protandrous - Protogynous: - text: Protogynous - Subandroecious: - text: Subandroecious - Subdioecious: - text: Subdioecious - Subgynoecious: - text: Subgynoecious - Synoecious: - text: Synoecious - Trimonoecious: - text: Trimonoecious - Trioecious: - text: Trioecious - Unisexual: - text: Unisexual - int_wall_cond_enum: - name: int_wall_cond_enum + Oil: + text: Oil + Gas-Condensate: + text: Gas-Condensate + Gas: + text: Gas + Bitumen: + text: Bitumen + Coalbed Methane: + text: Coalbed Methane + other: + text: other + biol_stat_enum: + name: biol_stat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - surf_material_enum: - name: surf_material_enum + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_mat_enum: + name: window_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass + clad: + text: clad + fiberglass: + text: fiberglass metal: text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile vinyl: text: vinyl wood: text: wood - indoor_space_enum: - name: indoor_space_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator - season_use_enum: - name: season_use_enum + room_samp_pos_enum: + name: room_samp_pos_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - tidal_stage_enum: - name: tidal_stage_enum + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + surf_air_cont_enum: + name: surf_air_cont_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - specific_enum: - name: specific_enum + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + door_type_enum: + name: door_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - photos: - text: photos - vis_media_enum: - name: vis_media_enum + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + organism_count_enum: + name: organism_count_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry - shading_device_type_enum: - name: shading_device_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning + ATP: + text: ATP + MPN: + text: MPN + other: + text: other sediment_type_enum: name: sediment_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -2894,44 +2995,36 @@ enums: text: hydrogenous lithogenous: text: lithogenous - window_loc_enum: - name: window_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - heat_deliv_loc_enum: - name: heat_deliv_loc_enum + substructure_type_enum: + name: substructure_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - train_stat_loc_enum: - name: train_stat_loc_enum + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + indoor_surf_enum: + name: indoor_surf_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall wall_surf_treatment_enum: name: wall_surf_treatment_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -2948,48 +3041,68 @@ enums: text: stucco fabric: text: fabric - quad_pos_enum: - name: quad_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - sr_kerog_type_enum: - name: sr_kerog_type_enum + drawings_enum: + name: drawings_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - water_feat_type_enum: - name: water_feat_type_enum + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + floor_finish_mat_enum: + name: floor_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - ceil_cond_enum: - name: ceil_cond_enum + tile: + text: tile + wood strip or parquet: + text: wood strip or parquet + carpet: + text: carpet + rug: + text: rug + laminate wood: + text: laminate wood + lineoleum: + text: lineoleum + vinyl composition tile: + text: vinyl composition tile + sheet vinyl: + text: sheet vinyl + stone: + text: stone + bamboo: + text: bamboo + cork: + text: cork + terrazo: + text: terrazo + concrete: + text: concrete + none: + text: none + sealed: + text: sealed + clear finish: + text: clear finish + paint: + text: paint + none or unfinished: + text: none or unfinished + floor_cond_enum: + name: floor_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: new: @@ -3002,350 +3115,221 @@ enums: text: damaged rupture: text: rupture - samp_md_enum: - name: samp_md_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - train_line_enum: - name: train_line_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - samp_dis_stage_enum: - name: samp_dis_stage_enum + cur_land_use_enum: + name: cur_land_use_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other - depos_env_enum: - name: depos_env_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - mech_struc_enum: - name: mech_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus - samp_floor_enum: - name: samp_floor_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby - sr_geol_age_enum: - name: sr_geol_age_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - window_type_enum: - name: window_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window - build_occup_type_enum: - name: build_occup_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - surf_air_cont_enum: - name: surf_air_cont_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - door_direct_enum: - name: door_direct_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - filter_type_enum: - name: filter_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - floor_struc_enum: - name: floor_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed - concrete: - text: concrete - heat_cool_type_enum: - name: heat_cool_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - tillage_enum: - name: tillage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - hcr_geol_age_enum: - name: hcr_geol_age_enum + badlands: + text: badlands + cities: + text: cities + conifers: + text: conifers + annotations: + originally: + tag: originally + value: conifers (e.g. pine,spruce,fir,cypress) + examples: + - value: cypress + - value: fir + - value: pine + - value: spruce + crop trees: + text: crop trees + annotations: + originally: + tag: originally + value: crop trees (nuts,fruit,christmas trees,nursery trees) + examples: + - value: christmas trees + - value: fruit + - value: nursery trees + - value: nuts + farmstead: + text: farmstead + gravel: + text: gravel + hardwoods: + text: hardwoods + annotations: + originally: + tag: originally + value: hardwoods (e.g. oak,hickory,elm,aspen) + examples: + - value: aspen + - value: elm + - value: hickory + - value: oak + hayland: + text: hayland + horticultural plants: + text: horticultural plants + annotations: + originally: + tag: originally + value: horticultural plants (e.g. tulips) + examples: + - value: tulips + industrial areas: + text: industrial areas + intermixed hardwood and conifers: + text: intermixed hardwood and conifers + marshlands: + text: marshlands + annotations: + originally: + tag: originally + value: marshlands (grass,sedges,rushes) + examples: + - value: grass + - value: rushes + - value: sedgees + meadows: + text: meadows + annotations: + originally: + tag: originally + value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) + examples: + - value: alfalfa + - value: bromegrass + - value: fescue + - value: grasses + - value: timothy + mines/quarries: + text: mines/quarries + mudflats: + text: mudflats + oil waste areas: + text: oil waste areas + pastureland: + text: pastureland + annotations: + originally: + tag: originally + value: pastureland (grasslands used for livestock grazing) + comments: + - grasslands used for livestock grazing + permanent snow or ice: + text: permanent snow or ice + rainforest: + text: rainforest + annotations: + originally: + tag: originally + value: rainforest (evergreen forest receiving greater than 406 cm annual + rainfall) + comments: + - evergreen forest receiving greater than 406 cm annual rainfall + rangeland: + text: rangeland + roads/railroads: + text: roads/railroads + rock: + text: rock + row crops: + text: row crops + saline seeps: + text: saline seeps + salt flats: + text: salt flats + sand: + text: sand + shrub crops: + text: shrub crops + annotations: + originally: + tag: originally + value: shrub crops (blueberries,nursery ornamentals,filberts) + examples: + - value: blueberries + - value: filberts + - value: nursery ornamentals + shrub land: + text: shrub land + annotations: + originally: + tag: originally + value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) + examples: + - value: creosote bush + - value: eucalyptus + - value: mesquite + - value: sage-brush + - value: shrub oak + small grains: + text: small grains + successional shrub land: + text: successional shrub land + annotations: + originally: + tag: originally + value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub + dogwoods,blackberries) + examples: + - value: blackberries + - value: chokecherry + - value: hazels + - value: shrub dogwoods + - value: sumacs + - value: tree saplings + swamp: + text: swamp + annotations: + originally: + tag: originally + value: swamp (permanent or semi-permanent water body dominated by woody + plants) + comments: + - permanent or semi-permanent water body dominated by woody plants + tropical: + text: tropical + annotations: + originally: + tag: originally + value: tropical (e.g. mangrove,palms) + examples: + - value: mangrove + - value: palms + tundra: + text: tundra + annotations: + originally: + tag: originally + value: tundra (mosses,lichens) + examples: + - value: lichens + - value: mosses + vegetable crops: + text: vegetable crops + vine crops: + text: vine crops + annotations: + originally: + tag: originally + value: vine crops (grapes) + examples: + - value: grapes + window_horiz_pos_enum: + name: window_horiz_pos_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - samp_subtype_enum: - name: samp_subtype_enum + left: + text: left + middle: + text: middle + right: + text: right + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other + permissible_values: + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat room_connected_enum: name: room_connected_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -3372,124 +3356,140 @@ enums: text: office stairwell: text: stairwell - floor_cond_enum: - name: floor_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - hc_produced_enum: - name: hc_produced_enum + freq_clean_enum: + name: freq_clean_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Oil: - text: Oil - Gas-Condensate: - text: Gas-Condensate - Gas: - text: Gas - Bitumen: - text: Bitumen - Coalbed Methane: - text: Coalbed Methane + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually other: text: other - door_type_wood_enum: - name: door_type_wood_enum + building_setting_enum: + name: building_setting_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - hcr_enum: - name: hcr_enum + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + ext_window_orient_enum: + name: ext_window_orient_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - biotic_relationship_enum: - name: biotic_relationship_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + handidness_enum: + name: handidness_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - door_move_enum: - name: door_move_enum + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + host_sex_enum: + name: host_sex_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - room_condt_enum: - name: room_condt_enum + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + build_occup_type_enum: + name: build_occup_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + weekday_enum: + name: weekday_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + train_stat_loc_enum: + name: train_stat_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside slots: model: name: model @@ -5045,9 +5045,12 @@ slots: websites: name: websites description: A list of websites that are associated with the entity. + comments: + - DOIs should not be included as websites. Instead, use the associated_dois slot. from_schema: https://w3id.org/nmdc/core multivalued: true range: string + pattern: ^[Hh][Tt][Tt][Pp][Ss]?:\/\/(?!.*[Dd][Oo][Ii]\.[Oo][Rr][Gg]).*$ highest_similarity_score: name: highest_similarity_score todos: @@ -17703,23 +17706,17 @@ slots: slot_uri: MIXS:0000156 multivalued: false range: QuantityValue - nucleic acid sequence source field: - name: nucleic acid sequence source field - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - abstract: true has raw value: name: has raw value from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml string_serialization: '{has numeric value} {has unit}' owner: QuantityValue - environment field: - name: environment field - description: field describing environmental aspect of a sample + nucleic acid sequence source field: + name: nucleic acid sequence source field from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true - core field: - name: core field - description: basic fields + sequencing field: + name: sequencing field from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true has numeric value: @@ -17727,13 +17724,19 @@ slots: from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml owner: QuantityValue range: double + core field: + name: core field + description: basic fields + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + abstract: true has unit: name: has unit description: Example "m" from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml owner: QuantityValue - sequencing field: - name: sequencing field + environment field: + name: environment field + description: field describing environmental aspect of a sample from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true investigation field: diff --git a/project/owl/nmdc.owl.ttl b/project/owl/nmdc.owl.ttl index b07b6acc37..267ad8bdbe 100644 --- a/project/owl/nmdc.owl.ttl +++ b/project/owl/nmdc.owl.ttl @@ -21,6128 +21,4015 @@ @prefix skos: . @prefix xsd: . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "abs_air_humidity" ; - dcterms:title "absolute air humidity" ; + rdfs:label "al_sat" ; + dcterms:title "extreme_unusual_properties/Al saturation" ; rdfs:range nmdc:QuantityValue ; rdfs:subPropertyOf ; - skos:altLabel "absolute air humidity" ; - skos:definition "Actual mass of water vapor - mh20 - present in the air water vapor mixture" ; + skos:altLabel "extreme_unusual_properties/Al saturation" ; + skos:definition "Aluminum saturation (esp. For tropical soils)" ; skos:inScheme ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; - nmdc:preferred_unit "gram per gram, kilogram per kilogram, kilogram, pound" . + nmdc:preferred_unit "percentage" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "add_recov_method" ; - dcterms:title "secondary and tertiary recovery methods and start date" ; + rdfs:label "al_sat_meth" ; + dcterms:title "extreme_unusual_properties/Al saturation method" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "secondary and tertiary recovery methods and start date" ; - skos:definition "Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed for increase of hydrocarbon recovery from resource and start date for each one of them. If \"other\" is specified, please propose entry in \"additional info\" field" ; + skos:altLabel "extreme_unusual_properties/Al saturation method" ; + skos:definition "Reference or method used in determining Al saturation" ; skos:inScheme ; - nmdc:expected_value "enumeration;timestamp" ; + nmdc:expected_value "PMID,DOI or URL" ; nmdc:occurrence "1" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "additional_info" ; - dcterms:title "additional info" ; - rdfs:range nmdc:TextValue ; + rdfs:label "annual_precpt" ; + dcterms:title "mean annual precipitation" ; + rdfs:range nmdc:QuantityValue ; rdfs:subPropertyOf ; - skos:altLabel "additional info" ; - skos:definition "Information that doesn't fit anywhere else. Can also be used to propose new entries for fields with controlled vocabulary" ; + skos:altLabel "mean annual precipitation" ; + skos:definition "The average of all annual precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps." ; skos:inScheme ; - nmdc:expected_value "text" ; - nmdc:occurrence "1" . + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "millimeter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "address" ; - dcterms:title "address" ; + rdfs:label "climate_environment" ; + dcterms:title "climate environment" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "address" ; - skos:definition "The street name and building number where the sampling occurred." ; + skos:altLabel "climate environment" ; + skos:definition "Treatment involving an exposure to a particular climate; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple climates" ; skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" . + nmdc:expected_value "climate name;treatment interval and duration" ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "adj_room" ; - dcterms:title "adjacent rooms" ; + rdfs:label "cur_vegetation_meth" ; + dcterms:title "current vegetation method" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "adjacent rooms" ; - skos:definition "List of rooms (room number, room name) immediately adjacent to the sampling room" ; + skos:altLabel "current vegetation method" ; + skos:definition "Reference or method used in vegetation classification" ; skos:inScheme ; - nmdc:expected_value "room name;room number" ; + nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "aero_struc" ; - dcterms:title "aerospace structure" ; - rdfs:range nmdc:TextValue ; + rdfs:label "env_broad_scale" ; + dcterms:title "broad-scale environmental context" ; + rdfs:range nmdc:ControlledIdentifiedTermValue ; + rdfs:subPropertyOf ; + skos:altLabel "broad-scale environmental context" ; + skos:definition "Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO’s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS" ; + skos:inScheme ; + nmdc:expected_value "The major environment type(s) where the sample was collected. Recommend subclasses of biome [ENVO:00000428]. Multiple terms can be separated by one or more pipes." . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "env_local_scale" ; + dcterms:title "local environmental context" ; + rdfs:range nmdc:ControlledIdentifiedTermValue ; + rdfs:subPropertyOf ; + skos:altLabel "local environmental context" ; + skos:definition "Report the entity or entities which are in the sample or specimen’s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS." ; + skos:inScheme ; + nmdc:expected_value "Environmental entities having causal influences upon the entity at time of sampling." . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "env_medium" ; + dcterms:title "environmental medium" ; + rdfs:range nmdc:ControlledIdentifiedTermValue ; + rdfs:subPropertyOf ; + skos:altLabel "environmental medium" ; + skos:definition "Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top)." ; + skos:inScheme ; + nmdc:expected_value "The material displaced by the entity at time of sampling. Recommend subclasses of environmental material [ENVO:00010483]." . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "extreme_event" ; + dcterms:title "history/extreme events" ; + rdfs:range nmdc:TimestampValue ; rdfs:subPropertyOf ; - skos:altLabel "aerospace structure" ; - skos:definition "Aerospace structures typically consist of thin plates with stiffeners for the external surfaces, bulkheads and frames to support the shape and fasteners such as welds, rivets, screws and bolts to hold the components together" ; + skos:altLabel "history/extreme events" ; + skos:definition "Unusual physical events that may have affected microbial populations" ; skos:inScheme ; - nmdc:expected_value "enumeration" ; + nmdc:expected_value "date" ; nmdc:occurrence "1" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "agrochem_addition" ; - dcterms:title "history/agrochemical additions" ; - rdfs:range nmdc:TextValue ; + rdfs:label "fire" ; + dcterms:title "history/fire" ; + rdfs:range nmdc:TimestampValue ; rdfs:subPropertyOf ; - skos:altLabel "history/agrochemical additions" ; - skos:definition "Addition of fertilizers, pesticides, etc. - amount and time of applications" ; + skos:altLabel "history/fire" ; + skos:definition "Historical and/or physical evidence of fire" ; skos:inScheme ; - nmdc:expected_value "agrochemical name;agrochemical amount;timestamp" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "gram, mole per liter, milligram per liter" . + nmdc:expected_value "date" ; + nmdc:occurrence "1" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "air_PM_concen" ; - dcterms:title "air particulate matter concentration" ; - rdfs:range nmdc:TextValue ; + rdfs:label "flooding" ; + dcterms:title "history/flooding" ; + rdfs:range nmdc:TimestampValue ; rdfs:subPropertyOf ; - skos:altLabel "air particulate matter concentration" ; - skos:definition "Concentration of substances that remain suspended in the air, and comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can report multiple PM's by entering numeric values preceded by name of PM" ; + skos:altLabel "history/flooding" ; + skos:definition "Historical and/or physical evidence of flooding" ; skos:inScheme ; - nmdc:expected_value "particulate matter name;measurement value" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "micrograms per cubic meter" . + nmdc:expected_value "date" ; + nmdc:occurrence "1" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "air_temp" ; - dcterms:title "air temperature" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "gaseous_environment" ; + dcterms:title "gaseous environment" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "air temperature" ; - skos:definition "Temperature of the air at the time of sampling" ; + skos:altLabel "gaseous environment" ; + skos:definition "Use of conditions with differing gaseous environments; should include the name of gaseous compound, amount administered, treatment duration, interval and total experimental duration; can include multiple gaseous environment regimens" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "degree Celsius" . + nmdc:expected_value "gaseous compound name;gaseous compound amount;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "micromole per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "air_temp_regm" ; - dcterms:title "air temperature regimen" ; + rdfs:label "heavy_metals" ; + dcterms:title "extreme_unusual_properties/heavy metals" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "air temperature regimen" ; - skos:definition "Information about treatment involving an exposure to varying temperatures; should include the temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include different temperature regimens" ; + skos:altLabel "extreme_unusual_properties/heavy metals" ; + skos:definition "Heavy metals present in the sequenced sample and their concentrations. For multiple heavy metals and concentrations, add multiple copies of this field." ; skos:inScheme ; - nmdc:expected_value "temperature value;treatment interval and duration" ; + nmdc:expected_value "heavy metal name;measurement value unit" ; nmdc:occurrence "m" ; - nmdc:preferred_unit "meter" . + nmdc:preferred_unit "microgram per gram" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "al_sat" ; - dcterms:title "extreme_unusual_properties/Al saturation" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "heavy_metals_meth" ; + dcterms:title "extreme_unusual_properties/heavy metals method" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "extreme_unusual_properties/Al saturation" ; - skos:definition "Aluminum saturation (esp. For tropical soils)" ; + skos:altLabel "extreme_unusual_properties/heavy metals method" ; + skos:definition "Reference or method used in determining heavy metals" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "percentage" . + nmdc:expected_value "PMID,DOI or url" ; + nmdc:occurrence "1" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "al_sat_meth" ; - dcterms:title "extreme_unusual_properties/Al saturation method" ; - rdfs:range nmdc:TextValue ; + rdfs:label "oxy_stat_samp" ; + dcterms:title "oxygenation status of sample" ; + rdfs:range nmdc:OxyStatSampEnum ; rdfs:subPropertyOf ; - skos:altLabel "extreme_unusual_properties/Al saturation method" ; - skos:definition "Reference or method used in determining Al saturation" ; + skos:altLabel "oxygenation status of sample" ; + skos:definition "Oxygenation status of sample" ; skos:inScheme ; - nmdc:expected_value "PMID,DOI or URL" ; + nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "alkalinity" ; - dcterms:title "alkalinity" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "ph_meth" ; + dcterms:title "pH method" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "alkalinity" ; - skos:definition "Alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate" ; + skos:altLabel "pH method" ; + skos:definition "Reference or method used in determining ph" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milliequivalent per liter, milligram per liter" . + nmdc:expected_value "PMID,DOI or url" ; + nmdc:occurrence "1" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "alkalinity_method" ; - dcterms:title "alkalinity method" ; + rdfs:label "salinity_meth" ; + dcterms:title "salinity method" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "alkalinity method" ; - skos:definition "Method used for alkalinity measurement" ; + skos:altLabel "salinity method" ; + skos:definition "Reference or method used in determining salinity" ; skos:inScheme ; - nmdc:expected_value "description of method" ; + nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "alkyl_diethers" ; - dcterms:title "alkyl diethers" ; + rdfs:label "season_precpt" ; + dcterms:title "mean seasonal precipitation" ; rdfs:range nmdc:QuantityValue ; rdfs:subPropertyOf ; - skos:altLabel "alkyl diethers" ; - skos:definition "Concentration of alkyl diethers" ; + skos:altLabel "mean seasonal precipitation" ; + skos:definition "The average of all seasonal precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps." ; skos:inScheme ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; - nmdc:preferred_unit "mole per liter" . + nmdc:preferred_unit "millimeter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "alt" ; - dcterms:title "altitude" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "altitude" ; - skos:definition "Altitude is a term used to identify heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. In this context, the altitude measurement is the vertical distance between the earth's surface above sea level and the sampled position in the air" ; - skos:inScheme ; - nmdc:expected_value "measurement value" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "aminopept_act" ; - dcterms:title "aminopeptidase activity" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "aminopeptidase activity" ; - skos:definition "Measurement of aminopeptidase activity" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "mole per liter per hour" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ammonium" ; - dcterms:title "ammonium" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "ammonium" ; - skos:definition "Concentration of ammonium in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "amount_light" ; - dcterms:title "amount of light" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "amount of light" ; - skos:definition "The unit of illuminance and luminous emittance, measuring luminous flux per unit area" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "lux, lumens per square meter" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ances_data" ; - dcterms:title "ancestral data" ; + rdfs:label "sieving" ; + dcterms:title "composite design/sieving" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "ancestral data" ; - skos:definition "Information about either pedigree or other ancestral information description (e.g. parental variety in case of mutant or selection), e.g. A/3*B (meaning [(A x B) x B] x B)" ; + skos:altLabel "composite design/sieving" ; + skos:definition "Collection design of pooled samples and/or sieve size and amount of sample sieved" ; skos:inScheme ; - nmdc:expected_value "free text" ; + nmdc:expected_value "design name and/or size;amount" ; nmdc:occurrence "1" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "annual_precpt" ; - dcterms:title "mean annual precipitation" ; + rdfs:label "slope_aspect" ; + dcterms:title "slope aspect" ; rdfs:range nmdc:QuantityValue ; rdfs:subPropertyOf ; - skos:altLabel "mean annual precipitation" ; - skos:definition "The average of all annual precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps." ; + skos:altLabel "slope aspect" ; + skos:definition "The direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees); e.g., nw or 315 degrees. This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration." ; skos:inScheme ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; - nmdc:preferred_unit "millimeter" . + nmdc:preferred_unit "degree" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "annual_temp" ; - dcterms:title "mean annual temperature" ; + rdfs:label "slope_gradient" ; + dcterms:title "slope gradient" ; rdfs:range nmdc:QuantityValue ; rdfs:subPropertyOf ; - skos:altLabel "mean annual temperature" ; - skos:definition "Mean annual temperature" ; + skos:altLabel "slope gradient" ; + skos:definition "Commonly called 'slope'. The angle between ground surface and a horizontal line (in percent). This is the direction that overland water would flow. This measure is usually taken with a hand level meter or clinometer" ; skos:inScheme ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; - nmdc:preferred_unit "degree Celsius" . + nmdc:preferred_unit "percentage" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "antibiotic_regm" ; - dcterms:title "antibiotic regimen" ; + rdfs:label "source_mat_id" ; + dcterms:title "source material identifiers" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "antibiotic regimen" ; - skos:definition "Information about treatment involving antibiotic administration; should include the name of antibiotic, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple antibiotic regimens" ; + rdfs:subPropertyOf ; + skos:altLabel "source material identifiers" ; + skos:definition "A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen voucher and sampled tissue with the same identifier. However, the /culture_collection qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id would refer to an identifier from some derived culture from which the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2)." ; skos:inScheme ; - nmdc:expected_value "antibiotic name;antibiotic amount;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "milligram" . + nmdc:expected_value "for cultures of microorganisms: identifiers for two culture collections; for other material a unique arbitrary identifer" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "api" ; - dcterms:title "API gravity" ; + rdfs:label "tot_carb" ; + dcterms:title "total carbon" ; rdfs:range nmdc:QuantityValue ; rdfs:subPropertyOf ; - skos:altLabel "API gravity" ; - skos:definition "API gravity is a measure of how heavy or light a petroleum liquid is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g. 31.1¬∞ API)" ; + skos:altLabel "total carbon" ; + skos:definition "Total carbon content" ; skos:inScheme ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; - nmdc:preferred_unit "degrees API" . + nmdc:preferred_unit "microgram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "arch_struc" ; - dcterms:title "architectural structure" ; - rdfs:range nmdc:ArchStrucEnum ; + rdfs:label "tot_nitro_cont_meth" ; + dcterms:title "total nitrogen content method" ; + rdfs:range linkml:String ; rdfs:subPropertyOf ; - skos:altLabel "architectural structure" ; - skos:definition "An architectural structure is a human-made, free-standing, immobile outdoor construction" ; + skos:altLabel "total nitrogen content method" ; + skos:definition "Reference or method used in determining the total nitrogen" ; skos:inScheme ; - nmdc:expected_value "enumeration" ; + nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "aromatics_pc" ; - dcterms:title "aromatics wt%" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "aromatics wt%" ; - skos:definition "Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; - skos:inScheme ; - nmdc:expected_value "name;measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "percent" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "asphaltenes_pc" ; - dcterms:title "asphaltenes wt%" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "asphaltenes wt%" ; - skos:definition "Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; - skos:inScheme ; - nmdc:expected_value "name;measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "percent" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "atmospheric_data" ; - dcterms:title "atmospheric data" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "atmospheric data" ; - skos:definition "Measurement of atmospheric data; can include multiple data" ; - skos:inScheme ; - nmdc:expected_value "atmospheric data name;measurement value" ; - nmdc:occurrence "m" . - - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "avg_dew_point" ; - dcterms:title "average dew point" ; + rdfs:label "tot_nitro_content" ; + dcterms:title "total nitrogen content" ; rdfs:range nmdc:QuantityValue ; rdfs:subPropertyOf ; - skos:altLabel "average dew point" ; - skos:definition "The average of dew point measures taken at the beginning of every hour over a 24 hour period on the sampling day" ; + skos:altLabel "total nitrogen content" ; + skos:definition "Total nitrogen content of the sample" ; skos:inScheme ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; - nmdc:preferred_unit "degree Celsius" . + nmdc:preferred_unit "microgram per liter, micromole per liter, milligram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "avg_occup" ; - dcterms:title "average daily occupancy" ; + rdfs:label "tot_org_c_meth" ; + dcterms:title "total organic carbon method" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "average daily occupancy" ; - skos:definition "Daily average occupancy of room. Indicate the number of person(s) daily occupying the sampling room." ; + skos:altLabel "total organic carbon method" ; + skos:definition "Reference or method used in determining total organic carbon" ; skos:inScheme ; - nmdc:expected_value "value" ; + nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "avg_temp" ; - dcterms:title "average temperature" ; + rdfs:label "tot_org_carb" ; + dcterms:title "total organic carbon" ; rdfs:range nmdc:QuantityValue ; rdfs:subPropertyOf ; - skos:altLabel "average temperature" ; - skos:definition "The average of temperatures taken at the beginning of every hour over a 24 hour period on the sampling day" ; + skos:altLabel "total organic carbon" ; + skos:definition "Definition for soil: total organic carbon content of the soil, definition otherwise: total organic carbon content" ; skos:inScheme ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; - nmdc:preferred_unit "degree Celsius" . + nmdc:preferred_unit "gram Carbon per kilogram sample material" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "bac_prod" ; - dcterms:title "bacterial production" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "water_cont_soil_meth" ; + dcterms:title "water content method" ; + rdfs:range linkml:String ; rdfs:subPropertyOf ; - skos:altLabel "bacterial production" ; - skos:definition "Bacterial production in the water column measured by isotope uptake" ; + skos:altLabel "water content method" ; + skos:definition "Reference or method used in determining the water content of soil" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per cubic meter per day" . + nmdc:expected_value "PMID,DOI or url" ; + nmdc:occurrence "1" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "bac_resp" ; - dcterms:title "bacterial respiration" ; + rdfs:label "water_content" ; + dcterms:title "water content" ; rdfs:range nmdc:QuantityValue ; rdfs:subPropertyOf ; - skos:altLabel "bacterial respiration" ; - skos:definition "Measurement of bacterial respiration in the water column" ; + skos:altLabel "water content" ; + skos:definition "Water content measurement" ; skos:inScheme ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per cubic meter per day, micromole oxygen per liter per hour" . + nmdc:preferred_unit "gram per gram or cubic centimeter per cubic centimeter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "bacteria_carb_prod" ; - dcterms:title "bacterial carbon production" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "watering_regm" ; + dcterms:title "watering regimen" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "bacterial carbon production" ; - skos:definition "Measurement of bacterial carbon production" ; + skos:altLabel "watering regimen" ; + skos:definition "Information about treatment involving an exposure to watering frequencies, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "nanogram per hour" . + nmdc:expected_value "measurement value;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "milliliter, liter" . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "barometric_press" ; - dcterms:title "barometric pressure" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "barometric pressure" ; - skos:definition "Force per unit area exerted against a surface by the weight of air above that surface" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "millibar" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "basin" ; - dcterms:title "basin name" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "basin name" ; - skos:definition "Name of the basin (e.g. Campos)" ; - skos:inScheme ; - nmdc:expected_value "name" ; - nmdc:occurrence "1" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "bathroom_count" ; - dcterms:title "bathroom count" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "bathroom count" ; - skos:definition "The number of bathrooms in the building" ; - skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "bedroom_count" ; - dcterms:title "bedroom count" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "bedroom count" ; - skos:definition "The number of bedrooms in the building" ; - skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "benzene" ; - dcterms:title "benzene" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "benzene" ; - skos:definition "Concentration of benzene in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter, parts per million" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "biochem_oxygen_dem" ; - dcterms:title "biochemical oxygen demand" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "biochemical oxygen demand" ; - skos:definition "Amount of dissolved oxygen needed by aerobic biological organisms in a body of water to break down organic material present in a given water sample at certain temperature over a specific time period" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "biocide" ; - dcterms:title "biocide administration" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "biocide administration" ; - skos:definition "List of biocides (commercial name of product and supplier) and date of administration" ; - skos:inScheme ; - nmdc:expected_value "name;name;timestamp" ; - nmdc:occurrence "1" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "biocide_admin_method" ; - dcterms:title "biocide administration method" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "biocide administration method" ; - skos:definition "Method of biocide administration (dose, frequency, duration, time elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3 days)" ; - skos:inScheme ; - nmdc:expected_value "measurement value;frequency;duration;duration" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "biol_stat" ; - dcterms:title "biological status" ; - rdfs:range nmdc:BiolStatEnum ; - rdfs:subPropertyOf ; - skos:altLabel "biological status" ; - skos:definition "The level of genome modification." ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . +nmdc:AnalyticalSample a owl:Class, + linkml:ClassDefinition ; + rdfs:label "AnalyticalSample" ; + dcterms:title "Analytical Sample" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + nmdc:MaterialEntity ; + skos:inScheme nmdc:core . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "biomass" ; - dcterms:title "biomass" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "biomass" ; - skos:definition "Amount of biomass; should include the name for the part of biomass measured, e.g. Microbial, total. Can include multiple measurements" ; - skos:inScheme ; - nmdc:expected_value "biomass type;measurement value" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "ton, kilogram, gram" . +nmdc:BooleanValue a owl:Class, + linkml:ClassDefinition ; + rdfs:label "BooleanValue" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_boolean_value ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:has_boolean_value ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Boolean ; + owl:onProperty nmdc:has_boolean_value ], + nmdc:AttributeValue ; + skos:definition "A value that is a boolean" ; + skos:inScheme nmdc:core . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "biotic_regm" ; - dcterms:title "biotic regimen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "biotic regimen" ; - skos:definition "Information about treatment(s) involving use of biotic factors, such as bacteria, viruses or fungi." ; - skos:inScheme ; - nmdc:expected_value "free text" ; - nmdc:occurrence "1" . +nmdc:DataGeneratingInstrument a owl:Class, + linkml:ClassDefinition ; + rdfs:label "DataGeneratingInstrument" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + nmdc:InstrumentMixin, + nmdc:NamedThing ; + skos:definition "An identified thing that is capable of generating scientific data" ; + skos:inScheme nmdc:core ; + skos:note "Likely a capital investment. One would want to say \"I used this serial number\"" . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "biotic_relationship" ; - dcterms:title "observed biotic relationship" ; - rdfs:range nmdc:BioticRelationshipEnum ; - rdfs:subPropertyOf ; - skos:altLabel "observed biotic relationship" ; - skos:definition "Description of relationship(s) between the subject organism and other organism(s) it is associated with. E.g., parasite on species X; mutualist with species Y. The target organism is the subject of the relationship, and the other organism(s) is the object" ; - skos:inScheme ; - nmdc:expected_value "enumeration" . +nmdc:EnvironmentalMaterialTerm a owl:Class, + linkml:ClassDefinition ; + rdfs:label "EnvironmentalMaterialTerm" ; + rdfs:subClassOf nmdc:OntologyClass ; + skos:inScheme nmdc:core . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "bishomohopanol" ; - dcterms:title "bishomohopanol" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "bishomohopanol" ; - skos:definition "Concentration of bishomohopanol" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter, microgram per gram" . +nmdc:IntegerValue a owl:Class, + linkml:ClassDefinition ; + rdfs:label "IntegerValue" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_numeric_value ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:has_numeric_value ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:has_numeric_value ], + nmdc:AttributeValue ; + skos:definition "A value that is an integer" ; + skos:inScheme nmdc:core . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "blood_press_diast" ; - dcterms:title "host blood pressure diastolic" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "host blood pressure diastolic" ; - skos:definition "Resting diastolic blood pressure, measured as mm mercury" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "millimeter mercury" . +nmdc:MetatranscriptomeAnnotationActivity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MetatranscriptomeAnnotationActivity" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gold_analysis_project_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gold_analysis_project_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^gold:Ga[0-9]+$" ] ) ] ; + owl:onProperty nmdc:gold_analysis_project_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:type ], + nmdc:WorkflowExecutionActivity ; + skos:inScheme nmdc:workflow_execution_activity . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "blood_press_syst" ; - dcterms:title "host blood pressure systolic" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "host blood pressure systolic" ; - skos:definition "Resting systolic blood pressure, measured as mm mercury" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "millimeter mercury" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "bromide" ; - dcterms:title "bromide" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "bromide" ; - skos:definition "Concentration of bromide" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "parts per million" . +nmdc:MetatranscriptomeAssembly a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MetatranscriptomeAssembly" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:insdc_assembly_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:num_aligned_reads ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gc_avg ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ctg_n90 ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^insdc.sra:[A-Z]+[0-9]+(\\.[0-9]+)?$" ] ) ] ; + owl:onProperty nmdc:insdc_assembly_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:ctg_l90 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gc_avg ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ctg_l50 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_powsum ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaffolds ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:ctg_l50 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_n90 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_l90 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:ctg_logsum ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_max ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:gap_pct ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gc_std ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_max ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_logsum ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:num_aligned_reads ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_bp ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaffolds ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_l90 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_n50 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:gc_std ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:num_aligned_reads ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_l50 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_max ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:contigs ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:contigs ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_bp ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_l50 ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:insdc_assembly_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:asm_score ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_logsum ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_n90 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_n_gt50k ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ctg_l90 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gap_pct ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_n50 ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ctg_max ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ctg_n90 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ctg_powsum ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ctg_n50 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:ctg_powsum ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ctg_l50 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:gc_avg ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ctg_logsum ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_l_gt50k ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_powsum ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_pct_gt50k ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_powsum ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_pct_gt50k ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:num_input_reads ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:contig_bp ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:ctg_n50 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_n50 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_n_gt50k ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ctg_logsum ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:contigs ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:num_input_reads ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_l_gt50k ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:asm_score ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ctg_l90 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_logsum ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ctg_n50 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_pct_gt50k ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ctg_max ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:asm_score ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_bp ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:ctg_n90 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_l90 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:contig_bp ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_l50 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:ctg_max ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaffolds ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gc_std ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ctg_powsum ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:num_input_reads ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:contig_bp ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gap_pct ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_n_gt50k ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_l_gt50k ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_n90 ], + nmdc:WorkflowExecutionActivity ; + skos:inScheme nmdc:workflow_execution_activity . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "build_docs" ; - dcterms:title "design, construction, and operation documents" ; - rdfs:range nmdc:BuildDocsEnum ; - rdfs:subPropertyOf ; - skos:altLabel "design, construction, and operation documents" ; - skos:definition "The building design, construction and operation documents" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . +nmdc:OrthologyGroup a owl:Class, + linkml:ClassDefinition ; + rdfs:label "OrthologyGroup" ; + rdfs:subClassOf nmdc:FunctionalAnnotationTerm ; + skos:definition "A set of genes or gene products in which all members are orthologous" ; + skos:editorialNote "KEGG.ORTHOLOGY prefix is used for KO numbers" ; + skos:exactMatch ; + skos:inScheme nmdc:annotation . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "build_occup_type" ; - dcterms:title "building occupancy type" ; - rdfs:range nmdc:BuildOccupTypeEnum ; - rdfs:subPropertyOf ; - skos:altLabel "building occupancy type" ; - skos:definition "The primary function for which a building or discrete part of a building is intended to be used" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "m" . +nmdc:Pathway a owl:Class, + linkml:ClassDefinition ; + rdfs:label "Pathway" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom nmdc:Reaction ; + owl:onProperty nmdc:has_part ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:has_part ], + nmdc:FunctionalAnnotationTerm ; + skos:altLabel "biological process", + "metabolic pathway", + "signaling pathway" ; + skos:definition "A pathway is a sequence of steps/reactions carried out by an organism or community of organisms" ; + skos:exactMatch ; + skos:inScheme nmdc:annotation . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "building_setting" ; - dcterms:title "building setting" ; - rdfs:range nmdc:BuildingSettingEnum ; - rdfs:subPropertyOf ; - skos:altLabel "building setting" ; - skos:definition "A location (geography) where a building is set" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . +nmdc:ProteinQuantification a owl:Class, + linkml:ClassDefinition ; + rdfs:label "ProteinQuantification" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:peptide_sequence_count ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:all_proteins ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:peptide_sequence_count ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:all_proteins ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:protein_sum_masic_abundance ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:protein_spectral_count ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:protein_spectral_count ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:best_protein ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:protein_sum_masic_abundance ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:best_protein ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:protein_spectral_count ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:best_protein ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:protein_sum_masic_abundance ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:peptide_sequence_count ] ; + skos:definition "This is used to link a metaproteomics analysis workflow to a specific protein" ; + skos:inScheme nmdc:core . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "built_struc_age" ; - dcterms:title "built structure age" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "built structure age" ; - skos:definition "The age of the built structure since construction" ; - skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "year" . +nmdc:UrlValue a owl:Class, + linkml:ClassDefinition ; + rdfs:label "UrlValue" ; + rdfs:subClassOf nmdc:AttributeValue ; + skos:definition "A value that is a string that conforms to URL syntax" ; + skos:inScheme nmdc:core . - a owl:ObjectProperty, +nmdc:activity_speed a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "built_struc_set" ; - dcterms:title "built structure setting" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "built structure setting" ; - skos:definition "The characterization of the location of the built structure as high or low human density" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + rdfs:label "activity_speed" ; + dcterms:title "activity speed" ; + rdfs:range nmdc:QuantityValue ; + skos:altLabel "shake_speed" ; + skos:inScheme nmdc:sample_prep . - a owl:ObjectProperty, +nmdc:activity_temperature a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "built_struc_type" ; - dcterms:title "built structure type" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "built structure type" ; - skos:definition "A physical structure that is a body or assemblage of bodies in space to form a system capable of supporting loads" ; - skos:inScheme ; - nmdc:expected_value "free text" ; - nmdc:occurrence "1" . + rdfs:label "activity_temperature" ; + rdfs:range nmdc:QuantityValue ; + skos:inScheme nmdc:sample_prep . - a owl:ObjectProperty, +nmdc:activity_time a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "calcium" ; - dcterms:title "calcium" ; + rdfs:label "activity_time" ; + dcterms:title "activity time" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "calcium" ; - skos:definition "Concentration of calcium in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter, micromole per liter, parts per million" . + skos:altLabel "shake_time" ; + skos:inScheme nmdc:sample_prep . - a owl:ObjectProperty, +nmdc:alternate_emails a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "carb_dioxide" ; - dcterms:title "carbon dioxide" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "carbon dioxide" ; - skos:definition "Carbon dioxide (gas) amount or concentration at the time of sampling" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter, parts per million" . + rdfs:label "alternate_emails" ; + rdfs:range linkml:String ; + skos:definition "One or more other email addresses for an entity." ; + skos:inScheme nmdc:core . - a owl:ObjectProperty, +nmdc:biogas_retention_time a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "carb_monoxide" ; - dcterms:title "carbon monoxide" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "carbon monoxide" ; - skos:definition "Carbon monoxide (gas) amount or concentration at the time of sampling" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter, parts per million" . + rdfs:label "biogas_retention_time" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:biogas_temperature a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "carb_nitro_ratio" ; - dcterms:title "carbon/nitrogen ratio" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "carbon/nitrogen ratio" ; - skos:definition "Ratio of amount or concentrations of carbon to nitrogen" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" . + rdfs:label "biogas_temperature" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:completion_date a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "ceil_area" ; - dcterms:title "ceiling area" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "ceiling area" ; - skos:definition "The area of the ceiling space within the room" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "square meter" . + rdfs:label "completion_date" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:concentration a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "ceil_cond" ; - dcterms:title "ceiling condition" ; - rdfs:range nmdc:CeilCondEnum ; - rdfs:subPropertyOf ; - skos:altLabel "ceiling condition" ; - skos:definition "The physical condition of the ceiling at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + rdfs:label "concentration" ; + rdfs:range nmdc:QuantityValue ; + skos:definition "The concentration of a substance used in an activity" ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:date_created a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "ceil_finish_mat" ; - dcterms:title "ceiling finish material" ; - rdfs:range nmdc:CeilFinishMatEnum ; - rdfs:subPropertyOf ; - skos:altLabel "ceiling finish material" ; - skos:definition "The type of material used to finish a ceiling" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + rdfs:label "date_created" ; + skos:definition "from database class" ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:device_type a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "ceil_struc" ; - dcterms:title "ceiling structure" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "ceiling structure" ; - skos:definition "The construction format of the ceiling" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + rdfs:label "device_type" ; + dcterms:title "device type" ; + rdfs:range nmdc:DeviceTypeEnum ; + skos:altLabel "shaker type" ; + skos:inScheme nmdc:sample_prep . - a owl:ObjectProperty, +nmdc:ecosystem_path_id a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "ceil_texture" ; - dcterms:title "ceiling texture" ; - rdfs:range nmdc:CeilTextureEnum ; - rdfs:subPropertyOf ; - skos:altLabel "ceiling texture" ; - skos:definition "The feel, appearance, or consistency of a ceiling surface" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + rdfs:label "ecosystem_path_id" ; + rdfs:range linkml:String ; + skos:definition "A unique id representing the GOLD classifiers associated with a sample." ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:emsl_store_temp a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "ceil_thermal_mass" ; - dcterms:title "ceiling thermal mass" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "ceiling thermal mass" ; - skos:definition "The ability of the ceiling to provide inertia against temperature fluctuations. Generally this means concrete that is exposed. A metal deck that supports a concrete slab will act thermally as long as it is exposed to room air flow" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "joule per degree Celsius" . + rdfs:label "emsl_store_temp" ; + dcterms:title "EMSL sample storage temperature, deg. C" ; + skos:definition "The temperature at which the sample should be stored upon delivery to EMSL" ; + skos:inScheme ; + skos:note "Enter a temperature in celsius. Numeric portion only." ; + sh:order 4 . - a owl:ObjectProperty, +nmdc:etl_software_version a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "ceil_type" ; - dcterms:title "ceiling type" ; - rdfs:range nmdc:CeilTypeEnum ; - rdfs:subPropertyOf ; - skos:altLabel "ceiling type" ; - skos:definition "The type of ceiling according to the ceiling's appearance or construction" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + rdfs:label "etl_software_version" ; + skos:definition "from database class" ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:insdc_analysis_identifiers a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "ceil_water_mold" ; - dcterms:title "ceiling signs of water/mold" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "ceiling signs of water/mold" ; - skos:definition "Signs of the presence of mold or mildew on the ceiling" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "chem_administration" ; - dcterms:title "chemical administration" ; - rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf ; - skos:altLabel "chemical administration" ; - skos:definition "List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology (chebi) (v 163), http://purl.bioontology.org/ontology/chebi" ; - skos:inScheme ; - nmdc:expected_value "CHEBI;timestamp" ; - nmdc:occurrence "m" . + rdfs:label "insdc_analysis_identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^insdc.sra:(E|D|S)RR[0-9]{6,}$" ] ) ] ; + rdfs:subPropertyOf nmdc:analysis_identifiers, + nmdc:insdc_identifiers ; + skos:inScheme nmdc:external_identifiers ; + skos:note "in INSDC this is a run but it corresponds to a GOLD analysis" . - a owl:ObjectProperty, +nmdc:insdc_secondary_sample_identifiers a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "chem_mutagen" ; - dcterms:title "chemical mutagen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "chemical mutagen" ; - skos:definition "Treatment involving use of mutagens; should include the name of mutagen, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mutagen regimens" ; - skos:inScheme ; - nmdc:expected_value "mutagen name;mutagen amount;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "milligram per liter" . + rdfs:label "insdc_secondary_sample_identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^biosample:(E|D|S)RS[0-9]{6,}$" ] ) ] ; + rdfs:subPropertyOf nmdc:biosample_identifiers, + nmdc:insdc_identifiers ; + skos:definition "secondary identifiers for corresponding sample in INSDC" ; + skos:inScheme nmdc:external_identifiers ; + skos:note "ENA redirects these to primary IDs, e.g. https://www.ebi.ac.uk/ena/browser/view/DRS166340 -> SAMD00212331", + "MGnify uses these as their primary sample IDs" . - a owl:ObjectProperty, +nmdc:insdc_sra_ena_study_identifiers a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "chem_oxygen_dem" ; - dcterms:title "chemical oxygen demand" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "chemical oxygen demand" ; - skos:definition "A measure of the capacity of water to consume oxygen during the decomposition of organic matter and the oxidation of inorganic chemicals such as ammonia and nitrite" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter" . + rdfs:label "insdc_sra_ena_study_identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^insdc.sra:(E|D|S)RP[0-9]{6,}$" ] ) ] ; + rdfs:seeAlso , + ; + rdfs:subPropertyOf nmdc:insdc_identifiers, + nmdc:study_identifiers ; + skos:altLabel "DDBJ SRA identifiers", + "EBI ENA study identifiers", + "NCBI SRA identifiers" ; + skos:definition "identifiers for corresponding project in INSDC SRA / ENA" ; + skos:inScheme nmdc:external_identifiers . - a owl:ObjectProperty, +nmdc:keywords a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "chem_treat_method" ; - dcterms:title "chemical treatment method" ; + rdfs:label "keywords" ; rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "chemical treatment method" ; - skos:definition "Method of chemical administration(dose, frequency, duration, time elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1 hr; 0 days)" ; - skos:inScheme ; - nmdc:expected_value "measurement value;frequency;duration;duration" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter" . + skos:definition "A list of keywords that used to associate the entity. Keywords SHOULD come from controlled vocabularies, including MESH, ENVO." ; + skos:inScheme nmdc:core ; + skos:mappingRelation dcterms:subject . - a owl:ObjectProperty, +nmdc:material_component_separation a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "chem_treatment" ; - dcterms:title "chemical treatment" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "chemical treatment" ; - skos:definition "List of chemical compounds administered upstream the sampling location where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors, demulsifiers, and other production chemicals etc.). The commercial name of the product and name of the supplier should be provided. The date of administration should also be included" ; - skos:inScheme ; - nmdc:expected_value "name;name;timestamp" ; - nmdc:occurrence "1" . + rdfs:label "material_component_separation" ; + rdfs:range linkml:String ; + skos:definition "A material processing in which components of an input material become segregated in space" ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:mgnify_analysis_identifiers a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "chimera_check" ; - dcterms:title "chimera check software" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "chimera check software" ; - skos:definition "Tool(s) used for chimera checking, including version number and parameters, to discover and remove chimeric sequences. A chimeric sequence is comprised of two or more phylogenetically distinct parent sequences." ; - skos:inScheme ; - nmdc:expected_value "name and version of software, parameters used" . + rdfs:label "mgnify_analysis_identifiers" ; + rdfs:subPropertyOf nmdc:analysis_identifiers, + nmdc:mgnify_identifiers ; + skos:editorialNote "removed pattern: \"^mgnify:MGYA[0-9]+$\" ## TODO https://github.com/bioregistry/bioregistry/issues/109" ; + skos:inScheme nmdc:external_identifiers . - a owl:ObjectProperty, +nmdc:modifier_substance a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "chloride" ; - dcterms:title "chloride" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "chloride" ; - skos:definition "Concentration of chloride in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter, parts per million" . + rdfs:label "modifier_substance" ; + rdfs:range linkml:String ; + skos:definition "The type of modification being done" ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:sample_collection_day a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "chlorophyll" ; - dcterms:title "chlorophyll" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "chlorophyll" ; - skos:definition "Concentration of chlorophyll" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per cubic meter, microgram per liter" . + rdfs:label "sample_collection_day" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:sample_collection_hour a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "climate_environment" ; - dcterms:title "climate environment" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "climate environment" ; - skos:definition "Treatment involving an exposure to a particular climate; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple climates" ; - skos:inScheme ; - nmdc:expected_value "climate name;treatment interval and duration" ; - nmdc:occurrence "m" . + rdfs:label "sample_collection_hour" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:sample_collection_minute a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "collection_date" ; - dcterms:title "collection date" ; - rdfs:range nmdc:TimestampValue ; - rdfs:subPropertyOf ; - skos:altLabel "collection date" ; - skos:definition "The time of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant" ; - skos:inScheme ; - nmdc:expected_value "date and time" . + rdfs:label "sample_collection_minute" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:sample_collection_month a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "conduc" ; - dcterms:title "conductivity" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "conductivity" ; - skos:definition "Electrical conductivity of water" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milliSiemens per centimeter" . + rdfs:label "sample_collection_month" ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:sample_collection_year a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "cool_syst_id" ; - dcterms:title "cooling system identifier" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "cooling system identifier" ; - skos:definition "The cooling system identifier" ; - skos:inScheme ; - nmdc:expected_value "unique identifier" ; - nmdc:occurrence "1" . + rdfs:label "sample_collection_year" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:soil_annual_season_temp a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "crop_rotation" ; - dcterms:title "history/crop rotation" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "history/crop rotation" ; - skos:definition "Whether or not crop is rotated, and if yes, rotation schedule" ; - skos:inScheme ; - nmdc:expected_value "crop rotation status;schedule" ; - nmdc:occurrence "1" . + rdfs:label "soil_annual_season_temp" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:value a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "cult_root_med" ; - dcterms:title "culture rooting medium" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "culture rooting medium" ; - skos:definition "Name or reference for the hydroponic or in vitro culture rooting medium; can be the name of a commonly used medium or reference to a specific medium, e.g. Murashige and Skoog medium. If the medium has not been formally published, use the rooting medium descriptors." ; - skos:inScheme ; - nmdc:expected_value "name, PMID,DOI or url" ; - nmdc:occurrence "1" . + rdfs:label "value" ; + rdfs:range nmdc:QuantityValue ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "cur_land_use" ; - dcterms:title "current land use" ; - rdfs:range nmdc:CurLandUseEnum ; - rdfs:subPropertyOf ; - skos:altLabel "current land use" ; - skos:definition "Present state of sample site" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:ContainerCategoryEnum ; + rdfs:label "V-bottom conical tube" ; + rdfs:subClassOf nmdc:ContainerCategoryEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "cur_vegetation" ; - dcterms:title "current vegetation" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "current vegetation" ; - skos:definition "Vegetation classification from one or more standard classification systems, or agricultural crop" ; - skos:inScheme ; - nmdc:expected_value "current vegetation type" ; - nmdc:occurrence "1" . +nmdc:Database a owl:Class, + linkml:ClassDefinition ; + rdfs:label "Database" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom nmdc:WorkflowExecutionActivity ; + owl:onProperty nmdc:activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:GenomeFeature ; + owl:onProperty nmdc:genome_feature_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ReadQcAnalysisActivity ; + owl:onProperty nmdc:read_qc_analysis_activity_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:functional_annotation_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:biosample_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:metaproteomics_analysis_activity_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:pooling_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:read_based_taxonomy_analysis_activity_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:data_object_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:metatranscriptome_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MagsAnalysisActivity ; + owl:onProperty nmdc:mags_activity_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:data_object_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:LibraryPreparation ; + owl:onProperty nmdc:library_preparation_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:study_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:collecting_biosamples_from_site_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:PlannedProcess ; + owl:onProperty nmdc:planned_process_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:processed_sample_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ReactionActivity ; + owl:onProperty nmdc:reaction_activity_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:metagenome_annotation_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Pooling ; + owl:onProperty nmdc:pooling_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:reaction_activity_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:metagenome_assembly_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:functional_annotation_agg ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:pooling_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:processed_sample_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:omics_processing_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:field_research_site_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MetatranscriptomeActivity ; + owl:onProperty nmdc:metatranscriptome_activity_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:planned_process_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MetaproteomicsAnalysisActivity ; + owl:onProperty nmdc:metaproteomics_analysis_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:OmicsProcessing ; + owl:onProperty nmdc:omics_processing_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:metagenome_sequencing_activity_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:genome_feature_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:read_qc_analysis_activity_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:genome_feature_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:collecting_biosamples_from_site_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Extraction ; + owl:onProperty nmdc:extraction_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:metabolomics_analysis_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ReadBasedTaxonomyAnalysisActivity ; + owl:onProperty nmdc:read_based_taxonomy_analysis_activity_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:metabolomics_analysis_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:FunctionalAnnotation ; + owl:onProperty nmdc:functional_annotation_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:omics_processing_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:library_preparation_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:dissolving_activity_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:mags_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:CollectingBiosamplesFromSite ; + owl:onProperty nmdc:collecting_biosamples_from_site_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:field_research_site_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MaterialSamplingActivity ; + owl:onProperty nmdc:material_sampling_activity_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:extraction_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:material_sample_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:nom_analysis_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MetagenomeSequencingActivity ; + owl:onProperty nmdc:metagenome_sequencing_activity_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:metatranscriptome_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:FieldResearchSite ; + owl:onProperty nmdc:field_research_site_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MaterialSample ; + owl:onProperty nmdc:material_sample_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:planned_process_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:mags_activity_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:biosample_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:FunctionalAnnotationAggMember ; + owl:onProperty nmdc:functional_annotation_agg ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:material_sampling_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MetagenomeAnnotationActivity ; + owl:onProperty nmdc:metagenome_annotation_activity_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:activity_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:study_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:library_preparation_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Biosample ; + owl:onProperty nmdc:biosample_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:functional_annotation_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MetagenomeAssembly ; + owl:onProperty nmdc:metagenome_assembly_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:DataObject ; + owl:onProperty nmdc:data_object_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MetabolomicsAnalysisActivity ; + owl:onProperty nmdc:metabolomics_analysis_activity_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:read_based_taxonomy_analysis_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:NomAnalysisActivity ; + owl:onProperty nmdc:nom_analysis_activity_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:metagenome_assembly_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:metagenome_sequencing_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:DissolvingActivity ; + owl:onProperty nmdc:dissolving_activity_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:nom_analysis_activity_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:activity_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:metagenome_annotation_activity_set ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:read_qc_analysis_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Study ; + owl:onProperty nmdc:study_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:metaproteomics_analysis_activity_set ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:extraction_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ProcessedSample ; + owl:onProperty nmdc:processed_sample_set ] ; + skos:altLabel "NMDC metadata object" ; + skos:definition "An abstract holder for any set of metadata and data. It does not need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest. For MongoDB, the lists of objects that Database slots point to correspond to **collections**." ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "cur_vegetation_meth" ; - dcterms:title "current vegetation method" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "current vegetation method" ; - skos:definition "Reference or method used in vegetation classification" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . +nmdc:Reaction a owl:Class, + linkml:ClassDefinition ; + rdfs:label "Reaction" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:smarts_string ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:direction ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Boolean ; + owl:onProperty nmdc:is_diastereoselective ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Boolean ; + owl:onProperty nmdc:is_balanced ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:is_diastereoselective ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:is_balanced ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:is_diastereoselective ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ReactionParticipant ; + owl:onProperty nmdc:left_participants ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:is_balanced ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:is_fully_characterized ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:right_participants ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ReactionParticipant ; + owl:onProperty nmdc:right_participants ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:smarts_string ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:left_participants ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:is_stereo ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:is_transport ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:direction ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:is_stereo ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:smarts_string ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Boolean ; + owl:onProperty nmdc:is_fully_characterized ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:is_transport ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Boolean ; + owl:onProperty nmdc:is_transport ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:is_fully_characterized ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Boolean ; + owl:onProperty nmdc:is_stereo ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:direction ], + nmdc:FunctionalAnnotationTerm ; + skos:definition "An individual biochemical transformation carried out by a functional unit of an organism, in which a collection of substrates are transformed into a collection of products. Can also represent transporters" ; + skos:exactMatch ; + skos:inScheme nmdc:annotation . - a owl:ObjectProperty, + a owl:Class, + nmdc:SamplingMethodEnum ; + rdfs:label "weighing" ; + rdfs:subClassOf nmdc:SamplingMethodEnum . + + a owl:Class, + nmdc:SeparationMethodEnum ; + rdfs:label "PTFE 96-well filter plate" ; + rdfs:subClassOf nmdc:SeparationMethodEnum . + +nmdc:assembly_identifiers a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "date_last_rain" ; - dcterms:title "date last rain" ; - rdfs:range nmdc:TimestampValue ; - rdfs:subPropertyOf ; - skos:altLabel "date last rain" ; - skos:definition "The date of the last time it rained" ; - skos:inScheme ; - nmdc:expected_value "timestamp" ; - nmdc:occurrence "1" . + rdfs:label "assembly_identifiers" ; + skos:inScheme nmdc:external_identifiers . - a owl:ObjectProperty, +nmdc:gnps_identifiers a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "density" ; - dcterms:title "density" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "density" ; - skos:definition "Density of the sample, which is its mass per unit volume (aka volumetric mass density)" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "gram per cubic meter, gram per cubic centimeter" . + rdfs:label "gnps_identifiers" ; + skos:inScheme nmdc:external_identifiers . - a owl:ObjectProperty, +nmdc:igsn_identifiers a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "depos_env" ; - dcterms:title "depositional environment" ; - rdfs:range nmdc:DeposEnvEnum ; - rdfs:subPropertyOf ; - skos:altLabel "depositional environment" ; - skos:definition "Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + rdfs:label "igsn_identifiers" ; + skos:inScheme nmdc:external_identifiers . - a owl:ObjectProperty, +nmdc:jgi_portal_identifiers a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "depth" ; - dcterms:title "depth" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "depth" ; - skos:definition "The vertical distance below local surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples." ; - skos:inScheme ; - nmdc:expected_value "measurement value" . + rdfs:label "jgi_portal_identifiers" ; + skos:definition "identifiers for entities according to JGI Portal" ; + skos:inScheme nmdc:external_identifiers . - a owl:ObjectProperty, +nmdc:omics_processing_identifiers a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "dew_point" ; - dcterms:title "dew point" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "omics_processing_identifiers" ; + rdfs:subPropertyOf nmdc:external_database_identifiers ; + skos:inScheme nmdc:external_identifiers . + +CHEBI:17790 a owl:Class, + nmdc:SolventEnum ; + rdfs:label "methanol" ; + rdfs:subClassOf nmdc:SolventEnum . + +CHEBI:35255 a owl:Class, + nmdc:SolventEnum ; + rdfs:label "chloroform" ; + rdfs:subClassOf nmdc:SolventEnum . + +OBI:0000103 a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Principal Investigator" ; + rdfs:subClassOf nmdc:CreditEnum . + +EFO:0001741 a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Submitter" ; + rdfs:subClassOf nmdc:CreditEnum . + + a owl:Class, + nmdc:ProcessingInstitutionEnum ; + rdfs:label "UCD_Genome_Center" ; + rdfs:subClassOf nmdc:ProcessingInstitutionEnum . + + a owl:Class, + nmdc:BiosampleCategoryEnum ; + rdfs:label "FICUS" ; + rdfs:subClassOf nmdc:BiosampleCategoryEnum . + + a owl:Class, + nmdc:BiosampleCategoryEnum ; + rdfs:label "LTER" ; + rdfs:subClassOf nmdc:BiosampleCategoryEnum . + + a owl:Class, + nmdc:ProcessingInstitutionEnum ; + rdfs:label "UCSD" ; + rdfs:subClassOf nmdc:ProcessingInstitutionEnum . + + a owl:Class, + nmdc:ProcessingInstitutionEnum ; + rdfs:label "Battelle" ; + rdfs:subClassOf nmdc:ProcessingInstitutionEnum . + + a owl:Class, + nmdc:DoiProviderEnum ; + rdfs:label "ess_dive" ; + rdfs:subClassOf nmdc:DoiProviderEnum . + + a owl:Class, + nmdc:DoiProviderEnum ; + rdfs:label "kbase" ; + rdfs:subClassOf nmdc:DoiProviderEnum . + + a owl:Class, + nmdc:DoiProviderEnum ; + rdfs:label "osti" ; + rdfs:subClassOf nmdc:DoiProviderEnum . + + a owl:Class, + nmdc:DoiProviderEnum ; + rdfs:label "edi" ; + rdfs:subClassOf nmdc:DoiProviderEnum . + + a owl:Class, + nmdc:ProcessingInstitutionEnum ; + rdfs:label "ANL" ; + rdfs:subClassOf nmdc:ProcessingInstitutionEnum . + + a owl:Class, + nmdc:BiosampleCategoryEnum ; + rdfs:label "SFA" ; + rdfs:subClassOf nmdc:BiosampleCategoryEnum . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "agrochem_addition" ; + dcterms:title "history/agrochemical additions" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "dew point" ; - skos:definition "The temperature to which a given parcel of humid air must be cooled, at constant barometric pressure, for water vapor to condense into water." ; + skos:altLabel "history/agrochemical additions" ; + skos:definition "Addition of fertilizers, pesticides, etc. - amount and time of applications" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "degree Celsius" . + nmdc:expected_value "agrochemical name;agrochemical amount;timestamp" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram, mole per liter, milligram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "diether_lipids" ; - dcterms:title "diether lipids" ; + rdfs:label "air_PM_concen" ; + dcterms:title "air particulate matter concentration" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "diether lipids" ; - skos:definition "Concentration of diether lipids; can include multiple types of diether lipids" ; + skos:altLabel "air particulate matter concentration" ; + skos:definition "Concentration of substances that remain suspended in the air, and comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can report multiple PM's by entering numeric values preceded by name of PM" ; skos:inScheme ; - nmdc:expected_value "diether lipid name;measurement value" ; + nmdc:expected_value "particulate matter name;measurement value" ; nmdc:occurrence "m" ; - nmdc:preferred_unit "nanogram per liter" . + nmdc:preferred_unit "micrograms per cubic meter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "diss_carb_dioxide" ; - dcterms:title "dissolved carbon dioxide" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "antibiotic_regm" ; + dcterms:title "antibiotic regimen" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "dissolved carbon dioxide" ; - skos:definition "Concentration of dissolved carbon dioxide in the sample or liquid portion of the sample" ; + skos:altLabel "antibiotic regimen" ; + skos:definition "Information about treatment involving antibiotic administration; should include the name of antibiotic, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple antibiotic regimens" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter, milligram per liter" . + nmdc:expected_value "antibiotic name;antibiotic amount;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "milligram" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "diss_hydrogen" ; - dcterms:title "dissolved hydrogen" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "atmospheric_data" ; + dcterms:title "atmospheric data" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "dissolved hydrogen" ; - skos:definition "Concentration of dissolved hydrogen" ; + skos:altLabel "atmospheric data" ; + skos:definition "Measurement of atmospheric data; can include multiple data" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter" . + nmdc:expected_value "atmospheric data name;measurement value" ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "diss_inorg_carb" ; - dcterms:title "dissolved inorganic carbon" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "biomass" ; + dcterms:title "biomass" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "dissolved inorganic carbon" ; - skos:definition "Dissolved inorganic carbon concentration in the sample, typically measured after filtering the sample using a 0.45 micrometer filter" ; + skos:altLabel "biomass" ; + skos:definition "Amount of biomass; should include the name for the part of biomass measured, e.g. Microbial, total. Can include multiple measurements" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter, milligram per liter, parts per million" . + nmdc:expected_value "biomass type;measurement value" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "ton, kilogram, gram" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "diss_inorg_nitro" ; - dcterms:title "dissolved inorganic nitrogen" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "build_occup_type" ; + dcterms:title "building occupancy type" ; + rdfs:range nmdc:BuildOccupTypeEnum ; rdfs:subPropertyOf ; - skos:altLabel "dissolved inorganic nitrogen" ; - skos:definition "Concentration of dissolved inorganic nitrogen" ; + skos:altLabel "building occupancy type" ; + skos:definition "The primary function for which a building or discrete part of a building is intended to be used" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter, micromole per liter" . + nmdc:expected_value "enumeration" ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "diss_inorg_phosp" ; - dcterms:title "dissolved inorganic phosphorus" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "chem_administration" ; + dcterms:title "chemical administration" ; + rdfs:range nmdc:ControlledTermValue ; rdfs:subPropertyOf ; - skos:altLabel "dissolved inorganic phosphorus" ; - skos:definition "Concentration of dissolved inorganic phosphorus in the sample" ; + skos:altLabel "chemical administration" ; + skos:definition "List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology (chebi) (v 163), http://purl.bioontology.org/ontology/chebi" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter, milligram per liter, parts per million" . + nmdc:expected_value "CHEBI;timestamp" ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "diss_iron" ; - dcterms:title "dissolved iron" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "chem_mutagen" ; + dcterms:title "chemical mutagen" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "dissolved iron" ; - skos:definition "Concentration of dissolved iron in the sample" ; + skos:altLabel "chemical mutagen" ; + skos:definition "Treatment involving use of mutagens; should include the name of mutagen, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mutagen regimens" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; + nmdc:expected_value "mutagen name;mutagen amount;treatment interval and duration" ; + nmdc:occurrence "m" ; nmdc:preferred_unit "milligram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "diss_org_carb" ; - dcterms:title "dissolved organic carbon" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "diether_lipids" ; + dcterms:title "diether lipids" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "dissolved organic carbon" ; - skos:definition "Concentration of dissolved organic carbon in the sample, liquid portion of the sample, or aqueous phase of the fluid" ; + skos:altLabel "diether lipids" ; + skos:definition "Concentration of diether lipids; can include multiple types of diether lipids" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter, milligram per liter" . + nmdc:expected_value "diether lipid name;measurement value" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "nanogram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "diss_org_nitro" ; - dcterms:title "dissolved organic nitrogen" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "emulsions" ; + dcterms:title "emulsions" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "dissolved organic nitrogen" ; - skos:definition "Dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2" ; + skos:altLabel "emulsions" ; + skos:definition "Amount or concentration of substances such as paints, adhesives, mayonnaise, hair colorants, emulsified oils, etc.; can include multiple emulsion types" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter, milligram per liter" . + nmdc:expected_value "emulsion name;measurement value" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "diss_oxygen" ; - dcterms:title "dissolved oxygen" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "fertilizer_regm" ; + dcterms:title "fertilizer regimen" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "dissolved oxygen" ; - skos:definition "Concentration of dissolved oxygen" ; + skos:altLabel "fertilizer regimen" ; + skos:definition "Information about treatment involving the use of fertilizers; should include the name of fertilizer, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fertilizer regimens" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per kilogram, milligram per liter" . + nmdc:expected_value "fertilizer name;fertilizer amount;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram, mole per liter, milligram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "diss_oxygen_fluid" ; - dcterms:title "dissolved oxygen in fluids" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "dissolved oxygen in fluids" ; - skos:definition "Concentration of dissolved oxygen in the oil field produced fluids as it contributes to oxgen-corrosion and microbial activity (e.g. Mic)." ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per kilogram, milligram per liter" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "door_comp_type" ; - dcterms:title "door type, composite" ; - rdfs:range nmdc:DoorCompTypeEnum ; + rdfs:label "filter_type" ; + dcterms:title "filter type" ; + rdfs:range nmdc:FilterTypeEnum ; rdfs:subPropertyOf ; - skos:altLabel "door type, composite" ; - skos:definition "The composite type of the door" ; + skos:altLabel "filter type" ; + skos:definition "A device which removes solid particulates or airborne molecular contaminants" ; skos:inScheme ; nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "door_cond" ; - dcterms:title "door condition" ; - rdfs:range nmdc:DoorCondEnum ; + rdfs:label "fungicide_regm" ; + dcterms:title "fungicide regimen" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "door condition" ; - skos:definition "The phsical condition of the door" ; + skos:altLabel "fungicide regimen" ; + skos:definition "Information about treatment involving use of fungicides; should include the name of fungicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fungicide regimens" ; skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:expected_value "fungicide name;fungicide amount;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram, mole per liter, milligram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "door_direct" ; - dcterms:title "door direction of opening" ; - rdfs:range nmdc:DoorDirectEnum ; + rdfs:label "gaseous_substances" ; + dcterms:title "gaseous substances" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "door direction of opening" ; - skos:definition "The direction the door opens" ; + skos:altLabel "gaseous substances" ; + skos:definition "Amount or concentration of substances such as hydrogen sulfide, carbon dioxide, methane, etc.; can include multiple substances" ; skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:expected_value "gaseous substance name;measurement value" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "micromole per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "door_loc" ; - dcterms:title "door location" ; - rdfs:range nmdc:DoorLocEnum ; + rdfs:label "gravity" ; + dcterms:title "gravity" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "door location" ; - skos:definition "The relative location of the door in the room" ; + skos:altLabel "gravity" ; + skos:definition "Information about treatment involving use of gravity factor to study various types of responses in presence, absence or modified levels of gravity; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple treatments" ; skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:expected_value "gravity factor value;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "meter per square second, g" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "door_mat" ; - dcterms:title "door material" ; - rdfs:range nmdc:DoorMatEnum ; + rdfs:label "growth_hormone_regm" ; + dcterms:title "growth hormone regimen" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "door material" ; - skos:definition "The material the door is composed of" ; + skos:altLabel "growth hormone regimen" ; + skos:definition "Information about treatment involving use of growth hormones; should include the name of growth hormone, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple growth hormone regimens" ; skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:expected_value "growth hormone name;growth hormone amount;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram, mole per liter, milligram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "door_move" ; - dcterms:title "door movement" ; - rdfs:range nmdc:DoorMoveEnum ; + rdfs:label "heat_cool_type" ; + dcterms:title "heating and cooling system type" ; + rdfs:range nmdc:HeatCoolTypeEnum ; rdfs:subPropertyOf ; - skos:altLabel "door movement" ; - skos:definition "The type of movement of the door" ; + skos:altLabel "heating and cooling system type" ; + skos:definition "Methods of conditioning or heating a room or building" ; skos:inScheme ; nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "door_size" ; - dcterms:title "door area or size" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "herbicide_regm" ; + dcterms:title "herbicide regimen" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "door area or size" ; - skos:definition "The size of the door" ; + skos:altLabel "herbicide regimen" ; + skos:definition "Information about treatment involving use of herbicides; information about treatment involving use of growth hormones; should include the name of herbicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "square meter" . + nmdc:expected_value "herbicide name;herbicide amount;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram, mole per liter, milligram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "door_type" ; - dcterms:title "door type" ; - rdfs:range nmdc:DoorTypeEnum ; + rdfs:label "host_diet" ; + dcterms:title "host diet" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "door type" ; - skos:definition "The type of door material" ; + skos:altLabel "host diet" ; + skos:definition "Type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types" ; skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:expected_value "diet type" ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "door_type_metal" ; - dcterms:title "door type, metal" ; - rdfs:range nmdc:DoorTypeMetalEnum ; + rdfs:label "host_family_relation" ; + dcterms:title "host family relationship" ; + rdfs:range linkml:String ; rdfs:subPropertyOf ; - skos:altLabel "door type, metal" ; - skos:definition "The type of metal door" ; + skos:altLabel "host family relationship" ; + skos:definition "Familial relationships to other hosts in the same study; can include multiple relationships" ; skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:expected_value "relationship type;arbitrary identifier" ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "door_type_wood" ; - dcterms:title "door type, wood" ; - rdfs:range nmdc:DoorTypeWoodEnum ; + rdfs:label "host_last_meal" ; + dcterms:title "host last meal" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "door type, wood" ; - skos:definition "The type of wood door" ; + skos:altLabel "host last meal" ; + skos:definition "Content of last meal and time since feeding; can include multiple values" ; skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:expected_value "content;duration" ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "door_water_mold" ; - dcterms:title "door signs of water/mold" ; - rdfs:range nmdc:TextValue ; + rdfs:label "host_subspecf_genlin" ; + dcterms:title "host subspecific genetic lineage" ; + rdfs:range linkml:String ; rdfs:subPropertyOf ; - skos:altLabel "door signs of water/mold" ; - skos:definition "Signs of the presence of mold or mildew on a door" ; + skos:altLabel "host subspecific genetic lineage" ; + skos:definition "Information about the genetic distinctness of the host organism below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123." ; skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:expected_value "Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, e.g. serovar, biotype, ecotype, variety, cultivar." ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "down_par" ; - dcterms:title "downward PAR" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "host_symbiont" ; + dcterms:title "observed host symbionts" ; + rdfs:range linkml:String ; rdfs:subPropertyOf ; - skos:altLabel "downward PAR" ; - skos:definition "Visible waveband radiance and irradiance measurements in the water column" ; + skos:altLabel "observed host symbionts" ; + skos:definition "The taxonomic name of the organism(s) found living in mutualistic, commensalistic, or parasitic symbiosis with the specific host." ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microEinstein per square meter per second, microEinstein per square centimeter per second" . + nmdc:expected_value "species name or common name" ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "drainage_class" ; - dcterms:title "drainage classification" ; - rdfs:range nmdc:DrainageClassEnum ; + rdfs:label "inorg_particles" ; + dcterms:title "inorganic particles" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "drainage classification" ; - skos:definition "Drainage classification from a standard system such as the USDA system" ; + skos:altLabel "inorganic particles" ; + skos:definition "Concentration of particles such as sand, grit, metal particles, ceramics, etc.; can include multiple particles" ; skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:expected_value "inorganic particle name;measurement value" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "mole per liter, milligram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "drawings" ; - dcterms:title "drawings" ; - rdfs:range nmdc:DrawingsEnum ; + rdfs:label "light_type" ; + dcterms:title "light type" ; + rdfs:range nmdc:LightTypeEnum ; rdfs:subPropertyOf ; - skos:altLabel "drawings" ; - skos:definition "The buildings architectural drawings; if design is chosen, indicate phase-conceptual, schematic, design development, and construction documents" ; + skos:altLabel "light type" ; + skos:definition "Application of light to achieve some practical or aesthetic effect. Lighting includes the use of both artificial light sources such as lamps and light fixtures, as well as natural illumination by capturing daylight. Can also include absence of light" ; skos:inScheme ; nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "efficiency_percent" ; - dcterms:title "efficiency percent" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "mechanical_damage" ; + dcterms:title "mechanical damage" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "efficiency percent" ; - skos:definition "Percentage of volatile solids removed from the anaerobic digestor" ; + skos:altLabel "mechanical damage" ; + skos:definition "Information about any mechanical damage exerted on the plant; can include multiple damages and sites" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter" . + nmdc:expected_value "damage type;body site" ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "elev" ; - dcterms:title "elevation" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "elevation" ; - skos:definition "Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit." ; + rdfs:label "mineral_nutr_regm" ; + dcterms:title "mineral nutrient regimen" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "mineral nutrient regimen" ; + skos:definition "Information about treatment involving the use of mineral supplements; should include the name of mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mineral nutrient regimens" ; skos:inScheme ; - nmdc:expected_value "measurement value" . + nmdc:expected_value "mineral nutrient name;mineral nutrient amount;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram, mole per liter, milligram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "elevator" ; - dcterms:title "elevator count" ; + rdfs:label "misc_param" ; + dcterms:title "miscellaneous parameter" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "elevator count" ; - skos:definition "The number of elevators within the built structure" ; + skos:altLabel "miscellaneous parameter" ; + skos:definition "Any other measurement performed or parameter collected, that is not listed here" ; skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" . + nmdc:expected_value "parameter name;measurement value" ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "emulsions" ; - dcterms:title "emulsions" ; + rdfs:label "n_alkanes" ; + dcterms:title "n-alkanes" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "emulsions" ; - skos:definition "Amount or concentration of substances such as paints, adhesives, mayonnaise, hair colorants, emulsified oils, etc.; can include multiple emulsion types" ; + skos:altLabel "n-alkanes" ; + skos:definition "Concentration of n-alkanes; can include multiple n-alkanes" ; skos:inScheme ; - nmdc:expected_value "emulsion name;measurement value" ; + nmdc:expected_value "n-alkane name;measurement value" ; nmdc:occurrence "m" ; - nmdc:preferred_unit "gram per liter" . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "env_broad_scale" ; - dcterms:title "broad-scale environmental context" ; - rdfs:range nmdc:ControlledIdentifiedTermValue ; - rdfs:subPropertyOf ; - skos:altLabel "broad-scale environmental context" ; - skos:definition "Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO’s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS" ; - skos:inScheme ; - nmdc:expected_value "The major environment type(s) where the sample was collected. Recommend subclasses of biome [ENVO:00000428]. Multiple terms can be separated by one or more pipes." . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "env_local_scale" ; - dcterms:title "local environmental context" ; - rdfs:range nmdc:ControlledIdentifiedTermValue ; - rdfs:subPropertyOf ; - skos:altLabel "local environmental context" ; - skos:definition "Report the entity or entities which are in the sample or specimen’s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS." ; - skos:inScheme ; - nmdc:expected_value "Environmental entities having causal influences upon the entity at time of sampling." . + nmdc:preferred_unit "micromole per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "env_medium" ; - dcterms:title "environmental medium" ; - rdfs:range nmdc:ControlledIdentifiedTermValue ; - rdfs:subPropertyOf ; - skos:altLabel "environmental medium" ; - skos:definition "Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top)." ; + rdfs:label "non_min_nutr_regm" ; + dcterms:title "non-mineral nutrient regimen" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf ; + skos:altLabel "non-mineral nutrient regimen" ; + skos:definition "Information about treatment involving the exposure of plant to non-mineral nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple non-mineral nutrient regimens" ; skos:inScheme ; - nmdc:expected_value "The material displaced by the entity at time of sampling. Recommend subclasses of environmental material [ENVO:00010483]." . + nmdc:expected_value "non-mineral nutrient name;non-mineral nutrient amount;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram, mole per liter, milligram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "escalator" ; - dcterms:title "escalator count" ; + rdfs:label "org_particles" ; + dcterms:title "organic particles" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "escalator count" ; - skos:definition "The number of escalators within the built structure" ; + skos:altLabel "organic particles" ; + skos:definition "Concentration of particles such as faeces, hairs, food, vomit, paper fibers, plant material, humus, etc." ; skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" . + nmdc:expected_value "particle name;measurement value" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "ethylbenzene" ; - dcterms:title "ethylbenzene" ; + rdfs:label "organism_count" ; + dcterms:title "organism count" ; rdfs:range nmdc:QuantityValue ; rdfs:subPropertyOf ; - skos:altLabel "ethylbenzene" ; - skos:definition "Concentration of ethylbenzene in the sample" ; + skos:altLabel "organism count" ; + skos:definition "Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter, parts per million" . + nmdc:expected_value "organism name;measurement value;enumeration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "number of cells per cubic meter, number of cells per milliliter, number of cells per cubic centimeter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "exp_duct" ; - dcterms:title "exposed ductwork" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "particle_class" ; + dcterms:title "particle classification" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "exposed ductwork" ; - skos:definition "The amount of exposed ductwork in the room" ; + skos:altLabel "particle classification" ; + skos:definition "Particles are classified, based on their size, into six general categories:clay, silt, sand, gravel, cobbles, and boulders; should include amount of particle preceded by the name of the particle type; can include multiple values" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "square meter" . + nmdc:expected_value "particle name;measurement value" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "micrometer" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "exp_pipe" ; - dcterms:title "exposed pipes" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "perturbation" ; + dcterms:title "perturbation" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "exposed pipes" ; - skos:definition "The number of exposed pipes in the room" ; + skos:altLabel "perturbation" ; + skos:definition "Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time of the entire perturbation period; can include multiple perturbation types" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" . + nmdc:expected_value "perturbation type name;perturbation interval and duration" ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "experimental_factor" ; - dcterms:title "experimental factor" ; - rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf ; - skos:altLabel "experimental factor" ; - skos:definition "Experimental factors are essentially the variable aspects of an experiment design which can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). For a browser of EFO (v 2.95) terms, please see http://purl.bioontology.org/ontology/EFO; for a browser of OBI (v 2018-02-12) terms please see http://purl.bioontology.org/ontology/OBI" ; + rdfs:label "pesticide_regm" ; + dcterms:title "pesticide regimen" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "pesticide regimen" ; + skos:definition "Information about treatment involving use of insecticides; should include the name of pesticide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple pesticide regimens" ; skos:inScheme ; - nmdc:expected_value "text or EFO and/or OBI" . + nmdc:expected_value "pesticide name;pesticide amount;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram, mole per liter, milligram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "ext_door" ; - dcterms:title "exterior door count" ; + rdfs:label "ph_regm" ; + dcterms:title "pH regimen" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "exterior door count" ; - skos:definition "The number of exterior doors in the built structure" ; + skos:altLabel "pH regimen" ; + skos:definition "Information about treatment involving exposure of plants to varying levels of ph of the growth media, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimen" ; skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" . + nmdc:expected_value "measurement value;treatment interval and duration" ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "ext_wall_orient" ; - dcterms:title "orientations of exterior wall" ; - rdfs:range nmdc:ExtWallOrientEnum ; + rdfs:label "phaeopigments" ; + dcterms:title "phaeopigments" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "orientations of exterior wall" ; - skos:definition "The orientation of the exterior wall" ; + skos:altLabel "phaeopigments" ; + skos:definition "Concentration of phaeopigments; can include multiple phaeopigments" ; skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:expected_value "phaeopigment name;measurement value" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "milligram per cubic meter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "ext_window_orient" ; - dcterms:title "orientations of exterior window" ; - rdfs:range nmdc:ExtWindowOrientEnum ; + rdfs:label "phosplipid_fatt_acid" ; + dcterms:title "phospholipid fatty acid" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "orientations of exterior window" ; - skos:definition "The compass direction the exterior window of the room is facing" ; + skos:altLabel "phospholipid fatty acid" ; + skos:definition "Concentration of phospholipid fatty acids; can include multiple values" ; skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:expected_value "phospholipid fatty acid name;measurement value" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "mole per gram, mole per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "extreme_event" ; - dcterms:title "history/extreme events" ; - rdfs:range nmdc:TimestampValue ; + rdfs:label "pollutants" ; + dcterms:title "pollutants" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "history/extreme events" ; - skos:definition "Unusual physical events that may have affected microbial populations" ; + skos:altLabel "pollutants" ; + skos:definition "Pollutant types and, amount or concentrations measured at the time of sampling; can report multiple pollutants by entering numeric values preceded by name of pollutant" ; skos:inScheme ; - nmdc:expected_value "date" ; - nmdc:occurrence "1" . + nmdc:expected_value "pollutant name;measurement value" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram, mole per liter, milligram per liter, microgram per cubic meter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "fao_class" ; - dcterms:title "soil_taxonomic/FAO classification" ; - rdfs:range nmdc:FaoClassEnum ; + rdfs:label "radiation_regm" ; + dcterms:title "radiation regimen" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "soil_taxonomic/FAO classification" ; - skos:definition "Soil classification from the FAO World Reference Database for Soil Resources. The list can be found at http://www.fao.org/nr/land/sols/soil/wrb-soil-maps/reference-groups" ; + skos:altLabel "radiation regimen" ; + skos:definition "Information about treatment involving exposure of plant or a plant part to a particular radiation regimen; should include the radiation type, amount or intensity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple radiation regimens" ; skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:expected_value "radiation type name;radiation amount;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "rad, gray" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "fertilizer_regm" ; - dcterms:title "fertilizer regimen" ; + rdfs:label "rainfall_regm" ; + dcterms:title "rainfall regimen" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "fertilizer regimen" ; - skos:definition "Information about treatment involving the use of fertilizers; should include the name of fertilizer, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fertilizer regimens" ; + skos:altLabel "rainfall regimen" ; + skos:definition "Information about treatment involving an exposure to a given amount of rainfall, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; skos:inScheme ; - nmdc:expected_value "fertilizer name;fertilizer amount;treatment interval and duration" ; + nmdc:expected_value "measurement value;treatment interval and duration" ; nmdc:occurrence "m" ; - nmdc:preferred_unit "gram, mole per liter, milligram per liter" . + nmdc:preferred_unit "millimeter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "field" ; - dcterms:title "field name" ; + rdfs:label "salt_regm" ; + dcterms:title "salt regimen" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "field name" ; - skos:definition "Name of the hydrocarbon field (e.g. Albacora)" ; + skos:altLabel "salt regimen" ; + skos:definition "Information about treatment involving use of salts as supplement to liquid and soil growth media; should include the name of salt, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple salt regimens" ; skos:inScheme ; - nmdc:expected_value "name" ; - nmdc:occurrence "1" . + nmdc:expected_value "salt name;salt amount;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram, microgram, mole per liter, gram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "filter_type" ; - dcterms:title "filter type" ; - rdfs:range nmdc:FilterTypeEnum ; + rdfs:label "samp_sort_meth" ; + dcterms:title "sample size sorting method" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "filter type" ; - skos:definition "A device which removes solid particulates or airborne molecular contaminants" ; + skos:altLabel "sample size sorting method" ; + skos:definition "Method by which samples are sorted; open face filter collecting total suspended particles, prefilter to remove particles larger than X micrometers in diameter, where common values of X would be 10 and 2.5 full size sorting in a cascade impactor." ; skos:inScheme ; - nmdc:expected_value "enumeration" ; + nmdc:expected_value "description of method" ; nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "fire" ; - dcterms:title "history/fire" ; - rdfs:range nmdc:TimestampValue ; + rdfs:label "season_environment" ; + dcterms:title "seasonal environment" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "history/fire" ; - skos:definition "Historical and/or physical evidence of fire" ; + skos:altLabel "seasonal environment" ; + skos:definition "Treatment involving an exposure to a particular season (e.g. Winter, summer, rabi, rainy etc.), treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment" ; skos:inScheme ; - nmdc:expected_value "date" ; - nmdc:occurrence "1" . + nmdc:expected_value "seasonal environment name;treatment interval and duration" ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "fireplace_type" ; - dcterms:title "fireplace type" ; + rdfs:label "soluble_inorg_mat" ; + dcterms:title "soluble inorganic material" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "fireplace type" ; - skos:definition "A firebox with chimney" ; + skos:altLabel "soluble inorganic material" ; + skos:definition "Concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc." ; skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:expected_value "soluble inorganic material name;measurement value" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram, microgram, mole per liter, gram per liter, parts per million" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "flooding" ; - dcterms:title "history/flooding" ; - rdfs:range nmdc:TimestampValue ; + rdfs:label "soluble_org_mat" ; + dcterms:title "soluble organic material" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "history/flooding" ; - skos:definition "Historical and/or physical evidence of flooding" ; + skos:altLabel "soluble organic material" ; + skos:definition "Concentration of substances such as urea, fruit sugars, soluble proteins, drugs, pharmaceuticals, etc." ; skos:inScheme ; - nmdc:expected_value "date" ; - nmdc:occurrence "1" . + nmdc:expected_value "soluble organic material name;measurement value" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram, microgram, mole per liter, gram per liter, parts per million" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "floor_age" ; - dcterms:title "floor age" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "standing_water_regm" ; + dcterms:title "standing water regimen" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "floor age" ; - skos:definition "The time period since installment of the carpet or flooring" ; + skos:altLabel "standing water regimen" ; + skos:definition "Treatment involving an exposure to standing water during a plant's life span, types can be flood water or standing water, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "years, weeks, days" . + nmdc:expected_value "standing water type;treatment interval and duration" ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "floor_area" ; - dcterms:title "floor area" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "substructure_type" ; + dcterms:title "substructure type" ; + rdfs:range nmdc:SubstructureTypeEnum ; rdfs:subPropertyOf ; - skos:altLabel "floor area" ; - skos:definition "The area of the floor space within the room" ; + skos:altLabel "substructure type" ; + skos:definition "The substructure or under building is that largely hidden section of the building which is built off the foundations to the ground floor level" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "square meter" . + nmdc:expected_value "enumeration" ; + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "floor_cond" ; - dcterms:title "floor condition" ; - rdfs:range nmdc:FloorCondEnum ; + rdfs:label "surf_air_cont" ; + dcterms:title "surface-air contaminant" ; + rdfs:range nmdc:SurfAirContEnum ; rdfs:subPropertyOf ; - skos:altLabel "floor condition" ; - skos:definition "The physical condition of the floor at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas" ; + skos:altLabel "surface-air contaminant" ; + skos:definition "Contaminant identified on surface" ; skos:inScheme ; nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "floor_count" ; - dcterms:title "floor count" ; + rdfs:label "suspend_solids" ; + dcterms:title "suspended solids" ; rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "floor count" ; - skos:definition "The number of floors in the building, including basements and mechanical penthouse" ; + skos:altLabel "suspended solids" ; + skos:definition "Concentration of substances including a wide variety of material, such as silt, decaying plant and animal matter; can include multiple substances" ; skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" . + nmdc:expected_value "suspended solid name;measurement value" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram, microgram, milligram per liter, mole per liter, gram per liter, part per million" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "floor_finish_mat" ; - dcterms:title "floor finish material" ; - rdfs:range nmdc:FloorFinishMatEnum ; + rdfs:label "tillage" ; + dcterms:title "history/tillage" ; + rdfs:range nmdc:TillageEnum ; rdfs:subPropertyOf ; - skos:altLabel "floor finish material" ; - skos:definition "The floor covering type; the finished surface that is walked on" ; + skos:altLabel "history/tillage" ; + skos:definition "Note method(s) used for tilling" ; skos:inScheme ; nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:occurrence "m" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "floor_struc" ; - dcterms:title "floor structure" ; - rdfs:range nmdc:FloorStrucEnum ; + rdfs:label "volatile_org_comp" ; + dcterms:title "volatile organic compounds" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "floor structure" ; - skos:definition "Refers to the structural elements and subfloor upon which the finish flooring is installed" ; + skos:altLabel "volatile organic compounds" ; + skos:definition "Concentration of carbon-based chemicals that easily evaporate at room temperature; can report multiple volatile organic compounds by entering numeric values preceded by name of compound" ; skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + nmdc:expected_value "volatile organic compound name;measurement value" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "microgram per cubic meter, parts per million, nanogram per liter" . - a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "floor_thermal_mass" ; - dcterms:title "floor thermal mass" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "water_temp_regm" ; + dcterms:title "water temperature regimen" ; + rdfs:range nmdc:TextValue ; rdfs:subPropertyOf ; - skos:altLabel "floor thermal mass" ; - skos:definition "The ability of the floor to provide inertia against temperature fluctuations" ; + skos:altLabel "water temperature regimen" ; + skos:definition "Information about treatment involving an exposure to water with varying degree of temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "joule per degree Celsius" . + nmdc:expected_value "measurement value;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "degree Celsius" . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "floor_water_mold" ; - dcterms:title "floor signs of water/mold" ; - rdfs:range nmdc:FloorWaterMoldEnum ; - rdfs:subPropertyOf ; - skos:altLabel "floor signs of water/mold" ; - skos:definition "Signs of the presence of mold or mildew in a room" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:AnalysisTypeEnum ; + rdfs:label "metabolomics" ; + rdfs:subClassOf nmdc:AnalysisTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "fluor" ; - dcterms:title "fluorescence" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "fluorescence" ; - skos:definition "Raw or converted fluorescence of water" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram chlorophyll a per cubic meter, volts" . + a owl:Class, + nmdc:AnalysisTypeEnum ; + rdfs:label "metagenomics" ; + rdfs:subClassOf nmdc:AnalysisTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "freq_clean" ; - dcterms:title "frequency of cleaning" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "frequency of cleaning" ; - skos:definition "The number of times the sample location is cleaned. Frequency of cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually." ; - skos:inScheme ; - nmdc:expected_value "enumeration or {text}" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:AnalysisTypeEnum ; + rdfs:label "metaproteomics" ; + rdfs:subClassOf nmdc:AnalysisTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "freq_cook" ; - dcterms:title "frequency of cooking" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "frequency of cooking" ; - skos:definition "The number of times a meal is cooked per week" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:AnalysisTypeEnum ; + rdfs:label "metatranscriptomics" ; + rdfs:subClassOf nmdc:AnalysisTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "fungicide_regm" ; - dcterms:title "fungicide regimen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "fungicide regimen" ; - skos:definition "Information about treatment involving use of fungicides; should include the name of fungicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fungicide regimens" ; - skos:inScheme ; - nmdc:expected_value "fungicide name;fungicide amount;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "gram, mole per liter, milligram per liter" . + a owl:Class, + nmdc:AnalysisTypeEnum ; + rdfs:label "natural organic matter" ; + rdfs:subClassOf nmdc:AnalysisTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "furniture" ; - dcterms:title "furniture" ; - rdfs:range nmdc:FurnitureEnum ; - rdfs:subPropertyOf ; - skos:altLabel "furniture" ; - skos:definition "The types of furniture present in the sampled room" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:ArchStrucEnum ; + rdfs:label "building" ; + rdfs:subClassOf nmdc:ArchStrucEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gaseous_environment" ; - dcterms:title "gaseous environment" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "gaseous environment" ; - skos:definition "Use of conditions with differing gaseous environments; should include the name of gaseous compound, amount administered, treatment duration, interval and total experimental duration; can include multiple gaseous environment regimens" ; - skos:inScheme ; - nmdc:expected_value "gaseous compound name;gaseous compound amount;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "micromole per liter" . + a owl:Class, + nmdc:ArchStrucEnum ; + rdfs:label "home" ; + rdfs:subClassOf nmdc:ArchStrucEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gaseous_substances" ; - dcterms:title "gaseous substances" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "gaseous substances" ; - skos:definition "Amount or concentration of substances such as hydrogen sulfide, carbon dioxide, methane, etc.; can include multiple substances" ; - skos:inScheme ; - nmdc:expected_value "gaseous substance name;measurement value" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "micromole per liter" . + a owl:Class, + nmdc:ArchStrucEnum ; + rdfs:label "shed" ; + rdfs:subClassOf nmdc:ArchStrucEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gender_restroom" ; - dcterms:title "gender of restroom" ; - rdfs:range nmdc:GenderRestroomEnum ; - rdfs:subPropertyOf ; - skos:altLabel "gender of restroom" ; - skos:definition "The gender type of the restroom" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BiolStatEnum ; + rdfs:label "breeder's line" ; + rdfs:subClassOf nmdc:BiolStatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "genetic_mod" ; - dcterms:title "genetic modification" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "genetic modification" ; - skos:definition "Genetic modifications of the genome of an organism, which may occur naturally by spontaneous mutation, or be introduced by some experimental means, e.g. specification of a transgene or the gene knocked-out or details of transient transfection" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI,url or free text" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BiolStatEnum ; + rdfs:label "clonal selection" ; + rdfs:subClassOf nmdc:BiolStatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "geo_loc_name" ; - dcterms:title "geographic location (country and/or sea,region)" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "geographic location (country and/or sea,region)" ; - skos:definition "The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)" ; - skos:inScheme ; - nmdc:expected_value "country or sea name (INSDC or GAZ): region(GAZ), specific location name" . + a owl:Class, + nmdc:BiolStatEnum ; + rdfs:label "hybrid" ; + rdfs:subClassOf nmdc:BiolStatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "glucosidase_act" ; - dcterms:title "glucosidase activity" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "glucosidase activity" ; - skos:definition "Measurement of glucosidase activity" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "mol per liter per hour" . + a owl:Class, + nmdc:BiolStatEnum ; + rdfs:label "inbred line" ; + rdfs:subClassOf nmdc:BiolStatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gravidity" ; - dcterms:title "gravidity" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "gravidity" ; - skos:definition "Whether or not subject is gravid, and if yes date due or date post-conception, specifying which is used" ; - skos:inScheme ; - nmdc:expected_value "gravidity status;timestamp" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BiolStatEnum ; + rdfs:label "mutant" ; + rdfs:subClassOf nmdc:BiolStatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gravity" ; - dcterms:title "gravity" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "gravity" ; - skos:definition "Information about treatment involving use of gravity factor to study various types of responses in presence, absence or modified levels of gravity; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple treatments" ; - skos:inScheme ; - nmdc:expected_value "gravity factor value;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "meter per square second, g" . + a owl:Class, + nmdc:BiolStatEnum ; + rdfs:label "natural" ; + rdfs:subClassOf nmdc:BiolStatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "growth_facil" ; - dcterms:title "growth facility" ; - rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf ; - skos:altLabel "growth facility" ; - skos:definition "Type of facility where the sampled plant was grown; controlled vocabulary: growth chamber, open top chamber, glasshouse, experimental garden, field. Alternatively use Crop Ontology (CO) terms, see http://www.cropontology.org/ontology/CO_715/Crop%20Research" ; - skos:inScheme ; - nmdc:expected_value "free text or CO" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BiolStatEnum ; + rdfs:label "semi-natural" ; + rdfs:subClassOf nmdc:BiolStatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "growth_habit" ; - dcterms:title "growth habit" ; - rdfs:range nmdc:GrowthHabitEnum ; - rdfs:subPropertyOf ; - skos:altLabel "growth habit" ; - skos:definition "Characteristic shape, appearance or growth form of a plant species" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BiolStatEnum ; + rdfs:label "wild" ; + rdfs:subClassOf nmdc:BiolStatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "growth_hormone_regm" ; - dcterms:title "growth hormone regimen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "growth hormone regimen" ; - skos:definition "Information about treatment involving use of growth hormones; should include the name of growth hormone, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple growth hormone regimens" ; - skos:inScheme ; - nmdc:expected_value "growth hormone name;growth hormone amount;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "gram, mole per liter, milligram per liter" . + a owl:Class, + nmdc:BiosampleCategoryEnum ; + rdfs:label "SIP" ; + rdfs:subClassOf nmdc:BiosampleCategoryEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "hall_count" ; - dcterms:title "hallway/corridor count" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "hallway/corridor count" ; - skos:definition "The total count of hallways and cooridors in the built structure" ; - skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BioticRelationshipEnum ; + rdfs:label "commensal" ; + rdfs:subClassOf nmdc:BioticRelationshipEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "handidness" ; - dcterms:title "handidness" ; - rdfs:range nmdc:HandidnessEnum ; - rdfs:subPropertyOf ; - skos:altLabel "handidness" ; - skos:definition "The handidness of the individual sampled" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BioticRelationshipEnum ; + rdfs:label "free living" ; + rdfs:subClassOf nmdc:BioticRelationshipEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "has numeric value" ; - rdfs:range linkml:Double ; - skos:inScheme . + a owl:Class, + nmdc:BioticRelationshipEnum ; + rdfs:label "parasite" ; + rdfs:subClassOf nmdc:BioticRelationshipEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "has raw value" ; - skos:inScheme . + a owl:Class, + nmdc:BioticRelationshipEnum ; + rdfs:label "symbiont" ; + rdfs:subClassOf nmdc:BioticRelationshipEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "has unit" ; - skos:definition "Example \"m\"" ; - skos:inScheme . + a owl:Class, + nmdc:BuildDocsEnum ; + rdfs:label "building information model" ; + rdfs:subClassOf nmdc:BuildDocsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "hc_produced" ; - dcterms:title "hydrocarbon type produced" ; - rdfs:range nmdc:HcProducedEnum ; - rdfs:subPropertyOf ; - skos:altLabel "hydrocarbon type produced" ; - skos:definition "Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate, etc). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BuildDocsEnum ; + rdfs:label "commissioning report" ; + rdfs:subClassOf nmdc:BuildDocsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "hcr" ; - dcterms:title "hydrocarbon resource type" ; - rdfs:range nmdc:HcrEnum ; - rdfs:subPropertyOf ; - skos:altLabel "hydrocarbon resource type" ; - skos:definition "Main Hydrocarbon Resource type. The term \"Hydrocarbon Resource\" HCR defined as a natural environmental feature containing large amounts of hydrocarbons at high concentrations potentially suitable for commercial exploitation. This term should not be confused with the Hydrocarbon Occurrence term which also includes hydrocarbon-rich environments with currently limited commercial interest such as seeps, outcrops, gas hydrates etc. If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BuildDocsEnum ; + rdfs:label "complaint logs" ; + rdfs:subClassOf nmdc:BuildDocsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "hcr_fw_salinity" ; - dcterms:title "formation water salinity" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "formation water salinity" ; - skos:definition "Original formation water salinity (prior to secondary recovery e.g. Waterflooding) expressed as TDS" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter" . + a owl:Class, + nmdc:BuildDocsEnum ; + rdfs:label "contract administration" ; + rdfs:subClassOf nmdc:BuildDocsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "hcr_geol_age" ; - dcterms:title "hydrocarbon resource geological age" ; - rdfs:range nmdc:HcrGeolAgeEnum ; - rdfs:subPropertyOf ; - skos:altLabel "hydrocarbon resource geological age" ; - skos:definition "Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BuildDocsEnum ; + rdfs:label "cost estimate" ; + rdfs:subClassOf nmdc:BuildDocsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "hcr_pressure" ; - dcterms:title "hydrocarbon resource original pressure" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "hydrocarbon resource original pressure" ; - skos:definition "Original pressure of the hydrocarbon resource" ; - skos:inScheme ; - nmdc:expected_value "measurement value range" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "atmosphere, kilopascal" . + a owl:Class, + nmdc:BuildDocsEnum ; + rdfs:label "janitorial schedules or logs" ; + rdfs:subClassOf nmdc:BuildDocsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "hcr_temp" ; - dcterms:title "hydrocarbon resource original temperature" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "hydrocarbon resource original temperature" ; - skos:definition "Original temperature of the hydrocarbon resource" ; - skos:inScheme ; - nmdc:expected_value "measurement value range" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "degree Celsius" . + a owl:Class, + nmdc:BuildDocsEnum ; + rdfs:label "maintenance plans" ; + rdfs:subClassOf nmdc:BuildDocsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "heat_cool_type" ; - dcterms:title "heating and cooling system type" ; - rdfs:range nmdc:HeatCoolTypeEnum ; - rdfs:subPropertyOf ; - skos:altLabel "heating and cooling system type" ; - skos:definition "Methods of conditioning or heating a room or building" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:BuildDocsEnum ; + rdfs:label "schedule" ; + rdfs:subClassOf nmdc:BuildDocsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "heat_deliv_loc" ; - dcterms:title "heating delivery locations" ; - rdfs:range nmdc:HeatDelivLocEnum ; - rdfs:subPropertyOf ; - skos:altLabel "heating delivery locations" ; - skos:definition "The location of heat delivery within the room" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BuildDocsEnum ; + rdfs:label "sections" ; + rdfs:subClassOf nmdc:BuildDocsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "heat_sys_deliv_meth" ; - dcterms:title "heating system delivery method" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "heating system delivery method" ; - skos:definition "The method by which the heat is delivered through the system" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BuildDocsEnum ; + rdfs:label "shop drawings" ; + rdfs:subClassOf nmdc:BuildDocsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "heat_system_id" ; - dcterms:title "heating system identifier" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "heating system identifier" ; - skos:definition "The heating system identifier" ; - skos:inScheme ; - nmdc:expected_value "unique identifier" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BuildDocsEnum ; + rdfs:label "submittals" ; + rdfs:subClassOf nmdc:BuildDocsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "heavy_metals" ; - dcterms:title "extreme_unusual_properties/heavy metals" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "extreme_unusual_properties/heavy metals" ; - skos:definition "Heavy metals present in the sequenced sample and their concentrations. For multiple heavy metals and concentrations, add multiple copies of this field." ; - skos:inScheme ; - nmdc:expected_value "heavy metal name;measurement value unit" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "microgram per gram" . + a owl:Class, + nmdc:BuildDocsEnum ; + rdfs:label "ventilation system" ; + rdfs:subClassOf nmdc:BuildDocsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "heavy_metals_meth" ; - dcterms:title "extreme_unusual_properties/heavy metals method" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "extreme_unusual_properties/heavy metals method" ; - skos:definition "Reference or method used in determining heavy metals" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BuildDocsEnum ; + rdfs:label "windows" ; + rdfs:subClassOf nmdc:BuildDocsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "height_carper_fiber" ; - dcterms:title "height carpet fiber mat" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "height carpet fiber mat" ; - skos:definition "The average carpet fiber height in the indoor environment" ; - skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "centimeter" . + a owl:Class, + nmdc:BuildOccupTypeEnum ; + rdfs:label "airport" ; + rdfs:subClassOf nmdc:BuildOccupTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "herbicide_regm" ; - dcterms:title "herbicide regimen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "herbicide regimen" ; - skos:definition "Information about treatment involving use of herbicides; information about treatment involving use of growth hormones; should include the name of herbicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; - skos:inScheme ; - nmdc:expected_value "herbicide name;herbicide amount;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "gram, mole per liter, milligram per liter" . + a owl:Class, + nmdc:BuildOccupTypeEnum ; + rdfs:label "commercial" ; + rdfs:subClassOf nmdc:BuildOccupTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "horizon_meth" ; - dcterms:title "soil horizon method" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "soil horizon method" ; - skos:definition "Reference or method used in determining the horizon" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BuildOccupTypeEnum ; + rdfs:label "health care" ; + rdfs:subClassOf nmdc:BuildOccupTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_age" ; - dcterms:title "host age" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "host age" ; - skos:definition "Age of host at the time of sampling; relevant scale depends on species and study, e.g. Could be seconds for amoebae or centuries for trees" ; - skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "year, day, hour" . + a owl:Class, + nmdc:BuildOccupTypeEnum ; + rdfs:label "high rise" ; + rdfs:subClassOf nmdc:BuildOccupTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_body_habitat" ; - dcterms:title "host body habitat" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "host body habitat" ; - skos:definition "Original body habitat where the sample was obtained from" ; - skos:inScheme ; - nmdc:expected_value "free text" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BuildOccupTypeEnum ; + rdfs:label "low rise" ; + rdfs:subClassOf nmdc:BuildOccupTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_body_product" ; - dcterms:title "host body product" ; - rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf ; - skos:altLabel "host body product" ; - skos:definition "Substance produced by the body, e.g. Stool, mucus, where the sample was obtained from. For foundational model of anatomy ontology (fma) or Uber-anatomy ontology (UBERON) terms, please see https://www.ebi.ac.uk/ols/ontologies/fma or https://www.ebi.ac.uk/ols/ontologies/uberon" ; - skos:inScheme ; - nmdc:expected_value "FMA or UBERON" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BuildOccupTypeEnum ; + rdfs:label "market" ; + rdfs:subClassOf nmdc:BuildOccupTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_body_site" ; - dcterms:title "host body site" ; - rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf ; - skos:altLabel "host body site" ; - skos:definition "Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). For foundational model of anatomy ontology (fma) (v 4.11.0) or Uber-anatomy ontology (UBERON) (v releases/2014-06-15) terms, please see http://purl.bioontology.org/ontology/FMA or http://purl.bioontology.org/ontology/UBERON" ; - skos:inScheme ; - nmdc:expected_value "FMA or UBERON" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BuildOccupTypeEnum ; + rdfs:label "office" ; + rdfs:subClassOf nmdc:BuildOccupTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_body_temp" ; - dcterms:title "host body temperature" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "host body temperature" ; - skos:definition "Core body temperature of the host when sample was collected" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "degree Celsius" . + a owl:Class, + nmdc:BuildOccupTypeEnum ; + rdfs:label "residence" ; + rdfs:subClassOf nmdc:BuildOccupTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_color" ; - dcterms:title "host color" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "host color" ; - skos:definition "The color of host" ; - skos:inScheme ; - nmdc:expected_value "color" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BuildOccupTypeEnum ; + rdfs:label "residential" ; + rdfs:subClassOf nmdc:BuildOccupTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_common_name" ; - dcterms:title "host common name" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "host common name" ; - skos:definition "Common name of the host." ; - skos:inScheme ; - nmdc:expected_value "common name" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BuildOccupTypeEnum ; + rdfs:label "restaurant" ; + rdfs:subClassOf nmdc:BuildOccupTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_diet" ; - dcterms:title "host diet" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "host diet" ; - skos:definition "Type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types" ; - skos:inScheme ; - nmdc:expected_value "diet type" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:BuildOccupTypeEnum ; + rdfs:label "school" ; + rdfs:subClassOf nmdc:BuildOccupTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_disease_stat" ; - dcterms:title "host disease status" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "host disease status" ; - skos:definition "List of diseases with which the host has been diagnosed; can include multiple diagnoses. The value of the field depends on host; for humans the terms should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org, non-human host diseases are free text" ; - skos:inScheme ; - nmdc:expected_value "disease name or Disease Ontology term" . + a owl:Class, + nmdc:BuildOccupTypeEnum ; + rdfs:label "sports complex" ; + rdfs:subClassOf nmdc:BuildOccupTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_dry_mass" ; - dcterms:title "host dry mass" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "host dry mass" ; - skos:definition "Measurement of dry mass" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "kilogram, gram" . + a owl:Class, + nmdc:BuildOccupTypeEnum ; + rdfs:label "wood framed" ; + rdfs:subClassOf nmdc:BuildOccupTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_family_relation" ; - dcterms:title "host family relationship" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "host family relationship" ; - skos:definition "Familial relationships to other hosts in the same study; can include multiple relationships" ; - skos:inScheme ; - nmdc:expected_value "relationship type;arbitrary identifier" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:BuildingSettingEnum ; + rdfs:label "exurban" ; + rdfs:subClassOf nmdc:BuildingSettingEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_genotype" ; - dcterms:title "host genotype" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "host genotype" ; - skos:definition "Observed genotype" ; - skos:inScheme ; - nmdc:expected_value "genotype" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BuildingSettingEnum ; + rdfs:label "rural" ; + rdfs:subClassOf nmdc:BuildingSettingEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_growth_cond" ; - dcterms:title "host growth conditions" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "host growth conditions" ; - skos:definition "Literature reference giving growth conditions of the host" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI,url or free text" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:BuildingSettingEnum ; + rdfs:label "suburban" ; + rdfs:subClassOf nmdc:BuildingSettingEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_height" ; - dcterms:title "host height" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "host height" ; - skos:definition "The height of subject" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "centimeter, millimeter, meter" . + a owl:Class, + nmdc:BuildingSettingEnum ; + rdfs:label "urban" ; + rdfs:subClassOf nmdc:BuildingSettingEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_last_meal" ; - dcterms:title "host last meal" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "host last meal" ; - skos:definition "Content of last meal and time since feeding; can include multiple values" ; - skos:inScheme ; - nmdc:expected_value "content;duration" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:CeilCondEnum ; + rdfs:label "damaged" ; + rdfs:subClassOf nmdc:CeilCondEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_length" ; - dcterms:title "host length" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "host length" ; - skos:definition "The length of subject" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "centimeter, millimeter, meter" . + a owl:Class, + nmdc:CeilCondEnum ; + rdfs:label "needs repair" ; + rdfs:subClassOf nmdc:CeilCondEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_life_stage" ; - dcterms:title "host life stage" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "host life stage" ; - skos:definition "Description of life stage of host" ; - skos:inScheme ; - nmdc:expected_value "stage" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilCondEnum ; + rdfs:label "new" ; + rdfs:subClassOf nmdc:CeilCondEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_phenotype" ; - dcterms:title "host phenotype" ; - rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf ; - skos:altLabel "host phenotype" ; - skos:definition "Phenotype of human or other host. For phenotypic quality ontology (pato) (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato. For Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP" ; - skos:inScheme ; - nmdc:expected_value "PATO or HP" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilCondEnum ; + rdfs:label "rupture" ; + rdfs:subClassOf nmdc:CeilCondEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_sex" ; - dcterms:title "host sex" ; - rdfs:range nmdc:HostSexEnum ; - rdfs:subPropertyOf ; - skos:altLabel "host sex" ; - skos:definition "Gender or physical sex of the host." ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilCondEnum ; + rdfs:label "visible wear" ; + rdfs:subClassOf nmdc:CeilCondEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_shape" ; - dcterms:title "host shape" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "host shape" ; - skos:definition "Morphological shape of host" ; - skos:inScheme ; - nmdc:expected_value "shape" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilFinishMatEnum ; + rdfs:label "PVC" ; + rdfs:subClassOf nmdc:CeilFinishMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_subject_id" ; - dcterms:title "host subject id" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "host subject id" ; - skos:definition "A unique identifier by which each subject can be referred to, de-identified." ; - skos:inScheme ; - nmdc:expected_value "unique identifier" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilFinishMatEnum ; + rdfs:label "drywall" ; + rdfs:subClassOf nmdc:CeilFinishMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_subspecf_genlin" ; - dcterms:title "host subspecific genetic lineage" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "host subspecific genetic lineage" ; - skos:definition "Information about the genetic distinctness of the host organism below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123." ; - skos:inScheme ; - nmdc:expected_value "Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, e.g. serovar, biotype, ecotype, variety, cultivar." ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:CeilFinishMatEnum ; + rdfs:label "fiberglass" ; + rdfs:subClassOf nmdc:CeilFinishMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_substrate" ; - dcterms:title "host substrate" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "host substrate" ; - skos:definition "The growth substrate of the host." ; - skos:inScheme ; - nmdc:expected_value "substrate name" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilFinishMatEnum ; + rdfs:label "metal" ; + rdfs:subClassOf nmdc:CeilFinishMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_symbiont" ; - dcterms:title "observed host symbionts" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "observed host symbionts" ; - skos:definition "The taxonomic name of the organism(s) found living in mutualistic, commensalistic, or parasitic symbiosis with the specific host." ; - skos:inScheme ; - nmdc:expected_value "species name or common name" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:CeilFinishMatEnum ; + rdfs:label "mineral fibre" ; + rdfs:subClassOf nmdc:CeilFinishMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_taxid" ; - dcterms:title "host taxid" ; - rdfs:range nmdc:ControlledIdentifiedTermValue ; - rdfs:subPropertyOf ; - skos:altLabel "host taxid" ; - skos:definition "NCBI taxon id of the host, e.g. 9606" ; - skos:inScheme ; - skos:note "Homo sapiens [NCBITaxon:9606] would be a reasonable has_raw_value" ; - nmdc:expected_value "NCBI taxon identifier" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilFinishMatEnum ; + rdfs:label "mineral wool/calcium silicate" ; + rdfs:subClassOf nmdc:CeilFinishMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_tot_mass" ; - dcterms:title "host total mass" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "host total mass" ; - skos:definition "Total mass of the host at collection, the unit depends on host" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "kilogram, gram" . + a owl:Class, + nmdc:CeilFinishMatEnum ; + rdfs:label "plasterboard" ; + rdfs:subClassOf nmdc:CeilFinishMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_wet_mass" ; - dcterms:title "host wet mass" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "host wet mass" ; - skos:definition "Measurement of wet mass" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "kilogram, gram" . + a owl:Class, + nmdc:CeilFinishMatEnum ; + rdfs:label "stucco" ; + rdfs:subClassOf nmdc:CeilFinishMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "humidity" ; - dcterms:title "humidity" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "humidity" ; - skos:definition "Amount of water vapour in the air, at the time of sampling" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "gram per cubic meter" . + a owl:Class, + nmdc:CeilFinishMatEnum ; + rdfs:label "tiles" ; + rdfs:subClassOf nmdc:CeilFinishMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "humidity_regm" ; - dcterms:title "humidity regimen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "humidity regimen" ; - skos:definition "Information about treatment involving an exposure to varying degree of humidity; information about treatment involving use of growth hormones; should include amount of humidity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; - skos:inScheme ; - nmdc:expected_value "humidity value;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "gram per cubic meter" . + a owl:Class, + nmdc:CeilFinishMatEnum ; + rdfs:label "wood" ; + rdfs:subClassOf nmdc:CeilFinishMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "indoor_space" ; - dcterms:title "indoor space" ; - rdfs:range nmdc:IndoorSpaceEnum ; - rdfs:subPropertyOf ; - skos:altLabel "indoor space" ; - skos:definition "A distinguishable space within a structure, the purpose for which discrete areas of a building is used" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilTextureEnum ; + rdfs:label "Santa-Fe texture" ; + rdfs:subClassOf nmdc:CeilTextureEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "indoor_surf" ; - dcterms:title "indoor surface" ; - rdfs:range nmdc:IndoorSurfEnum ; - rdfs:subPropertyOf ; - skos:altLabel "indoor surface" ; - skos:definition "Type of indoor surface" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilTextureEnum ; + rdfs:label "crows feet" ; + rdfs:subClassOf nmdc:CeilTextureEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "indust_eff_percent" ; - dcterms:title "industrial effluent percent" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "industrial effluent percent" ; - skos:definition "Percentage of industrial effluents received by wastewater treatment plant" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "percentage" . + a owl:Class, + nmdc:CeilTextureEnum ; + rdfs:label "crows-foot stomp" ; + rdfs:subClassOf nmdc:CeilTextureEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "inorg_particles" ; - dcterms:title "inorganic particles" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "inorganic particles" ; - skos:definition "Concentration of particles such as sand, grit, metal particles, ceramics, etc.; can include multiple particles" ; - skos:inScheme ; - nmdc:expected_value "inorganic particle name;measurement value" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "mole per liter, milligram per liter" . + a owl:Class, + nmdc:CeilTextureEnum ; + rdfs:label "double skip" ; + rdfs:subClassOf nmdc:CeilTextureEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "inside_lux" ; - dcterms:title "inside lux light" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "inside lux light" ; - skos:definition "The recorded value at sampling time (power density)" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "kilowatt per square metre" . + a owl:Class, + nmdc:CeilTextureEnum ; + rdfs:label "hawk and trowel" ; + rdfs:subClassOf nmdc:CeilTextureEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "int_wall_cond" ; - dcterms:title "interior wall condition" ; - rdfs:range nmdc:IntWallCondEnum ; - rdfs:subPropertyOf ; - skos:altLabel "interior wall condition" ; - skos:definition "The physical condition of the wall at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilTextureEnum ; + rdfs:label "knockdown" ; + rdfs:subClassOf nmdc:CeilTextureEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "iw_bt_date_well" ; - dcterms:title "injection water breakthrough date of specific well" ; - rdfs:range nmdc:TimestampValue ; - rdfs:subPropertyOf ; - skos:altLabel "injection water breakthrough date of specific well" ; - skos:definition "Injection water breakthrough date per well following a secondary and/or tertiary recovery" ; - skos:inScheme ; - nmdc:expected_value "timestamp" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilTextureEnum ; + rdfs:label "orange peel" ; + rdfs:subClassOf nmdc:CeilTextureEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "iwf" ; - dcterms:title "injection water fraction" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "injection water fraction" ; - skos:definition "Proportion of the produced fluids derived from injected water at the time of sampling. (e.g. 87%)" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "percent" . + a owl:Class, + nmdc:CeilTextureEnum ; + rdfs:label "popcorn" ; + rdfs:subClassOf nmdc:CeilTextureEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "last_clean" ; - dcterms:title "last time swept/mopped/vacuumed" ; - rdfs:range nmdc:TimestampValue ; - rdfs:subPropertyOf ; - skos:altLabel "last time swept/mopped/vacuumed" ; - skos:definition "The last time the floor was cleaned (swept, mopped, vacuumed)" ; - skos:inScheme ; - nmdc:expected_value "timestamp" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilTextureEnum ; + rdfs:label "rosebud stomp" ; + rdfs:subClassOf nmdc:CeilTextureEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "lat_lon" ; - dcterms:title "geographic location (latitude and longitude)" ; - rdfs:range nmdc:GeolocationValue ; - rdfs:subPropertyOf ; - skos:altLabel "geographic location (latitude and longitude)" ; - skos:definition "The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system" ; - skos:inScheme ; - nmdc:expected_value "decimal degrees, limit to 8 decimal points" . + a owl:Class, + nmdc:CeilTextureEnum ; + rdfs:label "skip trowel" ; + rdfs:subClassOf nmdc:CeilTextureEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "light_intensity" ; - dcterms:title "light intensity" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "light intensity" ; - skos:definition "Measurement of light intensity" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "lux" . + a owl:Class, + nmdc:CeilTextureEnum ; + rdfs:label "smooth" ; + rdfs:subClassOf nmdc:CeilTextureEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "light_regm" ; - dcterms:title "light regimen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "light regimen" ; - skos:definition "Information about treatment(s) involving exposure to light, including both light intensity and quality." ; - skos:inScheme ; - nmdc:expected_value "exposure type;light intensity;light quality" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "lux; micrometer, nanometer, angstrom" . + a owl:Class, + nmdc:CeilTextureEnum ; + rdfs:label "stomp knockdown" ; + rdfs:subClassOf nmdc:CeilTextureEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "light_type" ; - dcterms:title "light type" ; - rdfs:range nmdc:LightTypeEnum ; - rdfs:subPropertyOf ; - skos:altLabel "light type" ; - skos:definition "Application of light to achieve some practical or aesthetic effect. Lighting includes the use of both artificial light sources such as lamps and light fixtures, as well as natural illumination by capturing daylight. Can also include absence of light" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:CeilTextureEnum ; + rdfs:label "swirl" ; + rdfs:subClassOf nmdc:CeilTextureEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "link_addit_analys" ; - dcterms:title "links to additional analysis" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "links to additional analysis" ; - skos:definition "Link to additional analysis results performed on the sample" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilTypeEnum ; + rdfs:label "barrel-shaped" ; + rdfs:subClassOf nmdc:CeilTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "link_class_info" ; - dcterms:title "link to classification information" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "link to classification information" ; - skos:definition "Link to digitized soil maps or other soil classification information" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilTypeEnum ; + rdfs:label "cathedral" ; + rdfs:subClassOf nmdc:CeilTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "link_climate_info" ; - dcterms:title "link to climate information" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "link to climate information" ; - skos:definition "Link to climate resource" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilTypeEnum ; + rdfs:label "coffered" ; + rdfs:subClassOf nmdc:CeilTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "lithology" ; - dcterms:title "lithology" ; - rdfs:range nmdc:LithologyEnum ; - rdfs:subPropertyOf ; - skos:altLabel "lithology" ; - skos:definition "Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilTypeEnum ; + rdfs:label "concave" ; + rdfs:subClassOf nmdc:CeilTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "local_class" ; - dcterms:title "soil_taxonomic/local classification" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "soil_taxonomic/local classification" ; - skos:definition "Soil classification based on local soil classification system" ; - skos:inScheme ; - nmdc:expected_value "local classification name" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilTypeEnum ; + rdfs:label "cove" ; + rdfs:subClassOf nmdc:CeilTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "local_class_meth" ; - dcterms:title "soil_taxonomic/local classification method" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "soil_taxonomic/local classification method" ; - skos:definition "Reference or method used in determining the local soil classification" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CeilTypeEnum ; + rdfs:label "dropped" ; + rdfs:subClassOf nmdc:CeilTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "magnesium" ; - dcterms:title "magnesium" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "magnesium" ; - skos:definition "Concentration of magnesium in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "mole per liter, milligram per liter, parts per million, micromole per kilogram" . + a owl:Class, + nmdc:CeilTypeEnum ; + rdfs:label "stretched" ; + rdfs:subClassOf nmdc:CeilTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "max_occup" ; - dcterms:title "maximum occupancy" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "maximum occupancy" ; - skos:definition "The maximum amount of people allowed in the indoor environment" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Conceptualization" ; + rdfs:subClassOf nmdc:CreditEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "mean_frict_vel" ; - dcterms:title "mean friction velocity" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "mean friction velocity" ; - skos:definition "Measurement of mean friction velocity" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "meter per second" . + a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Data curation" ; + rdfs:subClassOf nmdc:CreditEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "mean_peak_frict_vel" ; - dcterms:title "mean peak friction velocity" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "mean peak friction velocity" ; - skos:definition "Measurement of mean peak friction velocity" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "meter per second" . + a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Formal Analysis" ; + rdfs:subClassOf nmdc:CreditEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "mech_struc" ; - dcterms:title "mechanical structure" ; - rdfs:range nmdc:MechStrucEnum ; - rdfs:subPropertyOf ; - skos:altLabel "mechanical structure" ; - skos:definition "mechanical structure: a moving structure" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Funding acquisition" ; + rdfs:subClassOf nmdc:CreditEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "mechanical_damage" ; - dcterms:title "mechanical damage" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "mechanical damage" ; - skos:definition "Information about any mechanical damage exerted on the plant; can include multiple damages and sites" ; - skos:inScheme ; - nmdc:expected_value "damage type;body site" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Investigation" ; + rdfs:subClassOf nmdc:CreditEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "methane" ; - dcterms:title "methane" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "methane" ; - skos:definition "Methane (gas) amount or concentration at the time of sampling" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter, parts per billion, parts per million" . + a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Methodology" ; + rdfs:subClassOf nmdc:CreditEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "micro_biomass_meth" ; - dcterms:title "microbial biomass method" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "microbial biomass method" ; - skos:definition "Reference or method used in determining microbial biomass" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Project administration" ; + rdfs:subClassOf nmdc:CreditEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "microbial_biomass" ; - dcterms:title "microbial biomass" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "microbial biomass" ; - skos:definition "The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer. If you keep this, you would need to have correction factors used for conversion to the final units" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "ton, kilogram, gram per kilogram soil" . + a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Resources" ; + rdfs:subClassOf nmdc:CreditEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "mineral_nutr_regm" ; - dcterms:title "mineral nutrient regimen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "mineral nutrient regimen" ; - skos:definition "Information about treatment involving the use of mineral supplements; should include the name of mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mineral nutrient regimens" ; - skos:inScheme ; - nmdc:expected_value "mineral nutrient name;mineral nutrient amount;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "gram, mole per liter, milligram per liter" . + a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Software" ; + rdfs:subClassOf nmdc:CreditEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "misc_param" ; - dcterms:title "miscellaneous parameter" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "miscellaneous parameter" ; - skos:definition "Any other measurement performed or parameter collected, that is not listed here" ; - skos:inScheme ; - nmdc:expected_value "parameter name;measurement value" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Supervision" ; + rdfs:subClassOf nmdc:CreditEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "n_alkanes" ; - dcterms:title "n-alkanes" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "n-alkanes" ; - skos:definition "Concentration of n-alkanes; can include multiple n-alkanes" ; - skos:inScheme ; - nmdc:expected_value "n-alkane name;measurement value" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "micromole per liter" . + a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Validation" ; + rdfs:subClassOf nmdc:CreditEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "nitrate" ; - dcterms:title "nitrate" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "nitrate" ; - skos:definition "Concentration of nitrate in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . + a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Visualization" ; + rdfs:subClassOf nmdc:CreditEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "nitrite" ; - dcterms:title "nitrite" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "nitrite" ; - skos:definition "Concentration of nitrite in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . + a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Writing original draft" ; + rdfs:subClassOf nmdc:CreditEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "nitro" ; - dcterms:title "nitrogen" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "nitrogen" ; - skos:definition "Concentration of nitrogen (total)" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter" . + a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Writing review and editing" ; + rdfs:subClassOf nmdc:CreditEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "non_min_nutr_regm" ; - dcterms:title "non-mineral nutrient regimen" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "non-mineral nutrient regimen" ; - skos:definition "Information about treatment involving the exposure of plant to non-mineral nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple non-mineral nutrient regimens" ; - skos:inScheme ; - nmdc:expected_value "non-mineral nutrient name;non-mineral nutrient amount;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "gram, mole per liter, milligram per liter" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "badlands" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "nucl_acid_amp" ; - dcterms:title "nucleic acid amplification" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "nucleic acid amplification" ; - skos:definition "A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the enzymatic amplification (PCR, TMA, NASBA) of specific nucleic acids" ; - skos:inScheme ; - nmdc:expected_value "PMID, DOI or URL" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "cities" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "nucl_acid_ext" ; - dcterms:title "nucleic acid extraction" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "nucleic acid extraction" ; - skos:definition "A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the material separation to recover the nucleic acid fraction from a sample" ; - skos:inScheme ; - nmdc:expected_value "PMID, DOI or URL" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "conifers" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "number_pets" ; - dcterms:title "number of pets" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "number of pets" ; - skos:definition "The number of pets residing in the sampled space" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "crop trees" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "number_plants" ; - dcterms:title "number of houseplants" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "number of houseplants" ; - skos:definition "The number of plant(s) in the sampling space" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "farmstead" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "number_resident" ; - dcterms:title "number of residents" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "number of residents" ; - skos:definition "The number of individuals currently occupying in the sampling location" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "gravel" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "occup_density_samp" ; - dcterms:title "occupant density at sampling" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "occupant density at sampling" ; - skos:definition "Average number of occupants at time of sampling per square footage" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "hardwoods" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "occup_document" ; - dcterms:title "occupancy documentation" ; - rdfs:range nmdc:OccupDocumentEnum ; - rdfs:subPropertyOf ; - skos:altLabel "occupancy documentation" ; - skos:definition "The type of documentation of occupancy" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "hayland" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "occup_samp" ; - dcterms:title "occupancy at sampling" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "occupancy at sampling" ; - skos:definition "Number of occupants present at time of sample within the given space" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "horticultural plants" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "org_carb" ; - dcterms:title "organic carbon" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "organic carbon" ; - skos:definition "Concentration of organic carbon" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "industrial areas" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "org_count_qpcr_info" ; - dcterms:title "organism count qPCR information" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "organism count qPCR information" ; - skos:definition "If qpcr was used for the cell count, the target gene name, the primer sequence and the cycling conditions should also be provided. (Example: 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; 30 cycles)" ; - skos:inScheme ; - nmdc:expected_value "gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes; total cycles" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "number of cells per gram (or ml or cm^2)" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "intermixed hardwood and conifers" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "org_matter" ; - dcterms:title "organic matter" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "organic matter" ; - skos:definition "Concentration of organic matter" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "marshlands" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "org_nitro" ; - dcterms:title "organic nitrogen" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "organic nitrogen" ; - skos:definition "Concentration of organic nitrogen" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "meadows" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "org_particles" ; - dcterms:title "organic particles" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "organic particles" ; - skos:definition "Concentration of particles such as faeces, hairs, food, vomit, paper fibers, plant material, humus, etc." ; - skos:inScheme ; - nmdc:expected_value "particle name;measurement value" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "gram per liter" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "mines/quarries" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "organism_count" ; - dcterms:title "organism count" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "organism count" ; - skos:definition "Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)" ; - skos:inScheme ; - nmdc:expected_value "organism name;measurement value;enumeration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "number of cells per cubic meter, number of cells per milliliter, number of cells per cubic centimeter" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "mudflats" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "owc_tvdss" ; - dcterms:title "oil water contact depth" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "oil water contact depth" ; - skos:definition "Depth of the original oil water contact (OWC) zone (average) (m TVDSS)" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "meter" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "oil waste areas" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "oxy_stat_samp" ; - dcterms:title "oxygenation status of sample" ; - rdfs:range nmdc:OxyStatSampEnum ; - rdfs:subPropertyOf ; - skos:altLabel "oxygenation status of sample" ; - skos:definition "Oxygenation status of sample" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "pastureland" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "oxygen" ; - dcterms:title "oxygen" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "oxygen" ; - skos:definition "Oxygen (gas) amount or concentration at the time of sampling" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter, parts per million" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "permanent snow or ice" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "part_org_carb" ; - dcterms:title "particulate organic carbon" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "particulate organic carbon" ; - skos:definition "Concentration of particulate organic carbon" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "rainforest" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "part_org_nitro" ; - dcterms:title "particulate organic nitrogen" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "particulate organic nitrogen" ; - skos:definition "Concentration of particulate organic nitrogen" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter, micromole per liter" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "rangeland" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "particle_class" ; - dcterms:title "particle classification" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "particle classification" ; - skos:definition "Particles are classified, based on their size, into six general categories:clay, silt, sand, gravel, cobbles, and boulders; should include amount of particle preceded by the name of the particle type; can include multiple values" ; - skos:inScheme ; - nmdc:expected_value "particle name;measurement value" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "micrometer" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "roads/railroads" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "pcr_cond" ; - dcterms:title "pcr conditions" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "pcr conditions" ; - skos:definition "Description of reaction conditions and components of PCR in the form of 'initial denaturation:94degC_1.5min; annealing=...'" ; - skos:inScheme ; - nmdc:expected_value "initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes;total cycles" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "rock" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "pcr_primers" ; - dcterms:title "pcr primers" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "pcr primers" ; - skos:definition "PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters" ; - skos:inScheme ; - nmdc:expected_value "FWD: forward primer sequence;REV:reverse primer sequence" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "row crops" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "permeability" ; - dcterms:title "permeability" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "permeability" ; - skos:definition "Measure of the ability of a hydrocarbon resource to allow fluids to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences))" ; - skos:inScheme ; - nmdc:expected_value "measurement value range" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "mD" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "saline seeps" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "perturbation" ; - dcterms:title "perturbation" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "perturbation" ; - skos:definition "Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time of the entire perturbation period; can include multiple perturbation types" ; - skos:inScheme ; - nmdc:expected_value "perturbation type name;perturbation interval and duration" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "salt flats" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "pesticide_regm" ; - dcterms:title "pesticide regimen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "pesticide regimen" ; - skos:definition "Information about treatment involving use of insecticides; should include the name of pesticide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple pesticide regimens" ; - skos:inScheme ; - nmdc:expected_value "pesticide name;pesticide amount;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "gram, mole per liter, milligram per liter" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "sand" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "petroleum_hydrocarb" ; - dcterms:title "petroleum hydrocarbon" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "petroleum hydrocarbon" ; - skos:definition "Concentration of petroleum hydrocarbon" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "shrub crops" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ph" ; - dcterms:title "pH" ; - rdfs:range linkml:Double ; - rdfs:subPropertyOf ; - skos:altLabel "pH" ; - skos:definition "Ph measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "shrub land" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ph_meth" ; - dcterms:title "pH method" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "pH method" ; - skos:definition "Reference or method used in determining ph" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "small grains" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ph_regm" ; - dcterms:title "pH regimen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "pH regimen" ; - skos:definition "Information about treatment involving exposure of plants to varying levels of ph of the growth media, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimen" ; - skos:inScheme ; - nmdc:expected_value "measurement value;treatment interval and duration" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "successional shrub land" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "phaeopigments" ; - dcterms:title "phaeopigments" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "phaeopigments" ; - skos:definition "Concentration of phaeopigments; can include multiple phaeopigments" ; - skos:inScheme ; - nmdc:expected_value "phaeopigment name;measurement value" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "milligram per cubic meter" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "swamp" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "phosphate" ; - dcterms:title "phosphate" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "phosphate" ; - skos:definition "Concentration of phosphate" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "tropical" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "phosplipid_fatt_acid" ; - dcterms:title "phospholipid fatty acid" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "phospholipid fatty acid" ; - skos:definition "Concentration of phospholipid fatty acids; can include multiple values" ; - skos:inScheme ; - nmdc:expected_value "phospholipid fatty acid name;measurement value" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "mole per gram, mole per liter" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "tundra" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "photon_flux" ; - dcterms:title "photon flux" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "photon flux" ; - skos:definition "Measurement of photon flux" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "number of photons per second per unit area" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "vegetable crops" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "plant_growth_med" ; - dcterms:title "plant growth medium" ; - rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf ; - skos:altLabel "plant growth medium" ; - skos:definition "Specification of the media for growing the plants or tissue cultured samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in vitro liquid culture medium. Recommended value is a specific value from EO:plant growth medium (follow this link for terms http://purl.obolibrary.org/obo/EO_0007147) or other controlled vocabulary" ; - skos:inScheme ; - nmdc:expected_value "EO or enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:CurLandUseEnum ; + rdfs:label "vine crops" ; + rdfs:subClassOf nmdc:CurLandUseEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "plant_product" ; - dcterms:title "plant product" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "plant product" ; - skos:definition "Substance produced by the plant, where the sample was obtained from" ; - skos:inScheme ; - nmdc:expected_value "product name" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "Continental - Aeolian" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "plant_sex" ; - dcterms:title "plant sex" ; - rdfs:range nmdc:PlantSexEnum ; - rdfs:subPropertyOf ; - skos:altLabel "plant sex" ; - skos:definition "Sex of the reproductive parts on the whole plant, e.g. pistillate, staminate, monoecieous, hermaphrodite." ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "Continental - Alluvial" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "plant_struc" ; - dcterms:title "plant structure" ; - rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf ; - skos:altLabel "plant structure" ; - skos:definition "Name of plant structure the sample was obtained from; for Plant Ontology (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO, e.g. petiole epidermis (PO_0000051). If an individual flower is sampled, the sex of it can be recorded here." ; - skos:inScheme ; - nmdc:expected_value "PO" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "Continental - Fluvial" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "pollutants" ; - dcterms:title "pollutants" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "pollutants" ; - skos:definition "Pollutant types and, amount or concentrations measured at the time of sampling; can report multiple pollutants by entering numeric values preceded by name of pollutant" ; - skos:inScheme ; - nmdc:expected_value "pollutant name;measurement value" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "gram, mole per liter, milligram per liter, microgram per cubic meter" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "Continental - Lacustrine" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "pool_dna_extracts" ; - dcterms:title "pooling of DNA extracts (if done)" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "pooling of DNA extracts (if done)" ; - skos:definition "Indicate whether multiple DNA extractions were mixed. If the answer yes, the number of extracts that were pooled should be given" ; - skos:inScheme ; - nmdc:expected_value "pooling status;number of pooled extracts" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "Marine - Deep" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "porosity" ; - dcterms:title "porosity" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "porosity" ; - skos:definition "Porosity of deposited sediment is volume of voids divided by the total volume of sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value or range" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "percentage" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "Marine - Reef" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "potassium" ; - dcterms:title "potassium" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "potassium" ; - skos:definition "Concentration of potassium in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter, parts per million" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "Marine - Shallow" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "pour_point" ; - dcterms:title "pour point" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "pour point" ; - skos:definition "Temperature at which a liquid becomes semi solid and loses its flow characteristics. In crude oil a high¬†pour point¬†is generally associated with a high paraffin content, typically found in crude deriving from a larger proportion of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "degree Celsius" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "Other - Evaporite" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "pre_treatment" ; - dcterms:title "pre-treatment" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "pre-treatment" ; - skos:definition "The process of pre-treatment removes materials that can be easily collected from the raw wastewater" ; - skos:inScheme ; - nmdc:expected_value "pre-treatment type" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "Other - Glacial" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "pres_animal_insect" ; - dcterms:title "presence of pets, animals, or insects" ; - rdfs:range [ a rdfs:Datatype ; - owl:intersectionOf ( linkml:String [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^(cat|dog|rodent|snake|other);\\d+$" ] ) ] ) ] ; - rdfs:subPropertyOf ; - skos:altLabel "presence of pets, animals, or insects" ; - skos:definition "The type and number of animals or insects present in the sampling space." ; - skos:inScheme ; - nmdc:expected_value "enumeration;count" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "Other - Volcanic" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "pressure" ; - dcterms:title "pressure" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "pressure" ; - skos:definition "Pressure to which the sample is subject to, in atmospheres" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "atmosphere" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "Transitional - Beach" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "prev_land_use_meth" ; - dcterms:title "history/previous land use method" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "history/previous land use method" ; - skos:definition "Reference or method used in determining previous land use and dates" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "Transitional - Deltaic" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "previous_land_use" ; - dcterms:title "history/previous land use" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "history/previous land use" ; - skos:definition "Previous land use and dates" ; - skos:inScheme ; - nmdc:expected_value "land use name;date" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "Transitional - Lagoonal" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "primary_prod" ; - dcterms:title "primary production" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "primary production" ; - skos:definition "Measurement of primary production, generally measured as isotope uptake" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per cubic meter per day, gram per square meter per day" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "Transitional - Lake" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "primary_treatment" ; - dcterms:title "primary treatment" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "primary treatment" ; - skos:definition "The process to produce both a generally homogeneous liquid capable of being treated biologically and a sludge that can be separately treated or processed" ; - skos:inScheme ; - nmdc:expected_value "primary treatment type" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "Transitional - Tidal" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "prod_rate" ; - dcterms:title "production rate" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "production rate" ; - skos:definition "Oil and/or gas production rates per well (e.g. 524 m3 / day)" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "cubic meter per day" . + a owl:Class, + nmdc:DeposEnvEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:DeposEnvEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "prod_start_date" ; - dcterms:title "production start date" ; - rdfs:range nmdc:TimestampValue ; - rdfs:subPropertyOf ; - skos:altLabel "production start date" ; - skos:definition "Date of field's first production" ; - skos:inScheme ; - nmdc:expected_value "timestamp" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DeviceEnum ; + rdfs:label "Agitation plunger" ; + rdfs:subClassOf nmdc:DeviceEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "profile_position" ; - dcterms:title "profile position" ; - rdfs:range nmdc:ProfilePositionEnum ; - rdfs:subPropertyOf ; - skos:altLabel "profile position" ; - skos:definition "Cross-sectional position in the hillslope where sample was collected.sample area position in relation to surrounding areas" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DeviceEnum ; + rdfs:label "CEREX System 96 processor" ; + rdfs:subClassOf nmdc:DeviceEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "quad_pos" ; - dcterms:title "quadrant position" ; - rdfs:range nmdc:QuadPosEnum ; - rdfs:subPropertyOf ; - skos:altLabel "quadrant position" ; - skos:definition "The quadrant position of the sampling room within the building" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DeviceEnum ; + rdfs:label "Drying oven" ; + rdfs:subClassOf nmdc:DeviceEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "radiation_regm" ; - dcterms:title "radiation regimen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "radiation regimen" ; - skos:definition "Information about treatment involving exposure of plant or a plant part to a particular radiation regimen; should include the radiation type, amount or intensity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple radiation regimens" ; - skos:inScheme ; - nmdc:expected_value "radiation type name;radiation amount;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "rad, gray" . + a owl:Class, + nmdc:DeviceEnum ; + rdfs:label "Orbital Shaker" ; + rdfs:subClassOf nmdc:DeviceEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rainfall_regm" ; - dcterms:title "rainfall regimen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "rainfall regimen" ; - skos:definition "Information about treatment involving an exposure to a given amount of rainfall, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; - skos:inScheme ; - nmdc:expected_value "measurement value;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "millimeter" . + a owl:Class, + nmdc:DeviceEnum ; + rdfs:label "Thermomixer" ; + rdfs:subClassOf nmdc:DeviceEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "reactor_type" ; - dcterms:title "reactor type" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "reactor type" ; - skos:definition "Anaerobic digesters can be designed and engineered to operate using a number of different process configurations, as batch or continuous, mesophilic, high solid or low solid, and single stage or multistage" ; - skos:inScheme ; - nmdc:expected_value "reactor type name" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DeviceEnum ; + rdfs:label "Vortex" ; + rdfs:subClassOf nmdc:DeviceEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "redox_potential" ; - dcterms:title "redox potential" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "redox potential" ; - skos:definition "Redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "millivolt" . + a owl:Class, + nmdc:DeviceTypeEnum ; + rdfs:label "orbital_shaker" ; + rdfs:subClassOf nmdc:DeviceTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rel_air_humidity" ; - dcterms:title "relative air humidity" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "relative air humidity" ; - skos:definition "Partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "percentage" . + a owl:Class, + nmdc:DeviceTypeEnum ; + rdfs:label "thermomixer" ; + rdfs:subClassOf nmdc:DeviceTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rel_humidity_out" ; - dcterms:title "outside relative humidity" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "outside relative humidity" ; - skos:definition "The recorded outside relative humidity value at the time of sampling" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "gram of air, kilogram of air" . +nmdc:DissolvingActivity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "DissolvingActivity" ; + dcterms:title "Dissolving activity" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:material_output ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:dissolution_reagent ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:dissolved_in ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty nmdc:dissolution_volume ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:material_input ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:dissolution_volume ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:SolventEnum ; + owl:onProperty nmdc:dissolution_reagent ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:dissolution_volume ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:material_input ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:material_output ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:material_output ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:dissolved_in ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:material_input ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MaterialContainer ; + owl:onProperty nmdc:dissolved_in ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:dissolution_reagent ] ; + skos:altLabel "dissolution-activity" ; + skos:exactMatch ; + skos:inScheme nmdc:sample_prep . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rel_samp_loc" ; - dcterms:title "relative sampling location" ; - rdfs:range nmdc:RelSampLocEnum ; - rdfs:subPropertyOf ; - skos:altLabel "relative sampling location" ; - skos:definition "The sampling location within the train car" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DnaSampleFormatEnum ; + rdfs:label "10 mM Tris-HCl" ; + rdfs:subClassOf nmdc:DnaSampleFormatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "reservoir" ; - dcterms:title "reservoir name" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "reservoir name" ; - skos:definition "Name of the reservoir (e.g. Carapebus)" ; - skos:inScheme ; - nmdc:expected_value "name" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DnaSampleFormatEnum ; + rdfs:label "DNAStable" ; + rdfs:subClassOf nmdc:DnaSampleFormatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "resins_pc" ; - dcterms:title "resins wt%" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "resins wt%" ; - skos:definition "Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; - skos:inScheme ; - nmdc:expected_value "name;measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "percent" . + a owl:Class, + nmdc:DnaSampleFormatEnum ; + rdfs:label "Ethanol" ; + rdfs:subClassOf nmdc:DnaSampleFormatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_air_exch_rate" ; - dcterms:title "room air exchange rate" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "room air exchange rate" ; - skos:definition "The rate at which outside air replaces indoor air in a given space" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "liter per hour" . + a owl:Class, + nmdc:DnaSampleFormatEnum ; + rdfs:label "Gentegra-DNA" ; + rdfs:subClassOf nmdc:DnaSampleFormatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_architec_elem" ; - dcterms:title "room architectural elements" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "room architectural elements" ; - skos:definition "The unique details and component parts that, together, form the architecture of a distinguisahable space within a built structure" ; - skos:inScheme ; - nmdc:expected_value "free text" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DnaSampleFormatEnum ; + rdfs:label "Gentegra-RNA" ; + rdfs:subClassOf nmdc:DnaSampleFormatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_condt" ; - dcterms:title "room condition" ; - rdfs:range nmdc:RoomCondtEnum ; - rdfs:subPropertyOf ; - skos:altLabel "room condition" ; - skos:definition "The condition of the room at the time of sampling" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DnaSampleFormatEnum ; + rdfs:label "Low EDTA TE" ; + rdfs:subClassOf nmdc:DnaSampleFormatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_connected" ; - dcterms:title "rooms connected by a doorway" ; - rdfs:range nmdc:RoomConnectedEnum ; - rdfs:subPropertyOf ; - skos:altLabel "rooms connected by a doorway" ; - skos:definition "List of rooms connected to the sampling room by a doorway" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DnaSampleFormatEnum ; + rdfs:label "MDA reaction buffer" ; + rdfs:subClassOf nmdc:DnaSampleFormatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_count" ; - dcterms:title "room count" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "room count" ; - skos:definition "The total count of rooms in the built structure including all room types" ; - skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DnaSampleFormatEnum ; + rdfs:label "PBS" ; + rdfs:subClassOf nmdc:DnaSampleFormatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_dim" ; - dcterms:title "room dimensions" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "room dimensions" ; - skos:definition "The length, width and height of sampling room" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "meter" . + a owl:Class, + nmdc:DnaSampleFormatEnum ; + rdfs:label "Pellet" ; + rdfs:subClassOf nmdc:DnaSampleFormatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_door_dist" ; - dcterms:title "room door distance" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "room door distance" ; - skos:definition "Distance between doors (meters) in the hallway between the sampling room and adjacent rooms" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "meter" . + a owl:Class, + nmdc:DnaSampleFormatEnum ; + rdfs:label "RNAStable" ; + rdfs:subClassOf nmdc:DnaSampleFormatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_door_share" ; - dcterms:title "rooms that share a door with sampling room" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "rooms that share a door with sampling room" ; - skos:definition "List of room(s) (room number, room name) sharing a door with the sampling room" ; - skos:inScheme ; - nmdc:expected_value "room name;room number" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DnaSampleFormatEnum ; + rdfs:label "TE" ; + rdfs:subClassOf nmdc:DnaSampleFormatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_hallway" ; - dcterms:title "rooms that are on the same hallway" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "rooms that are on the same hallway" ; - skos:definition "List of room(s) (room number, room name) located in the same hallway as sampling room" ; - skos:inScheme ; - nmdc:expected_value "room name;room number" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DnaSampleFormatEnum ; + rdfs:label "Water" ; + rdfs:subClassOf nmdc:DnaSampleFormatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_loc" ; - dcterms:title "room location in building" ; - rdfs:range nmdc:RoomLocEnum ; - rdfs:subPropertyOf ; - skos:altLabel "room location in building" ; - skos:definition "The position of the room within the building" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoiCategoryEnum ; + rdfs:label "award_doi" ; + rdfs:subClassOf nmdc:DoiCategoryEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_moist_dam_hist" ; - dcterms:title "room moisture damage or mold history" ; - rdfs:range linkml:Integer ; - rdfs:subPropertyOf ; - skos:altLabel "room moisture damage or mold history" ; - skos:definition "The history of moisture damage or mold in the past 12 months. Number of events of moisture damage or mold observed" ; - skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoiCategoryEnum ; + rdfs:label "data_management_plan_doi" ; + rdfs:subClassOf nmdc:DoiCategoryEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_net_area" ; - dcterms:title "room net area" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "room net area" ; - skos:definition "The net floor area of sampling room. Net area excludes wall thicknesses" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "square feet, square meter" . + a owl:Class, + nmdc:DoiCategoryEnum ; + rdfs:label "dataset_doi" ; + rdfs:subClassOf nmdc:DoiCategoryEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_occup" ; - dcterms:title "room occupancy" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "room occupancy" ; - skos:definition "Count of room occupancy at time of sampling" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoiCategoryEnum ; + rdfs:label "publication_doi" ; + rdfs:subClassOf nmdc:DoiCategoryEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_samp_pos" ; - dcterms:title "room sampling position" ; - rdfs:range nmdc:RoomSampPosEnum ; - rdfs:subPropertyOf ; - skos:altLabel "room sampling position" ; - skos:definition "The horizontal sampling position in the room relative to architectural elements" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoiProviderEnum ; + rdfs:label "gsc" ; + rdfs:subClassOf nmdc:DoiProviderEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_type" ; - dcterms:title "room type" ; - rdfs:range nmdc:RoomTypeEnum ; - rdfs:subPropertyOf ; - skos:altLabel "room type" ; - skos:definition "The main purpose or activity of the sampling room. A room is any distinguishable space within a structure" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoiProviderEnum ; + rdfs:label "massive" ; + rdfs:subClassOf nmdc:DoiProviderEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_vol" ; - dcterms:title "room volume" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "room volume" ; - skos:definition "Volume of sampling room" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "cubic feet, cubic meter" . + a owl:Class, + nmdc:DoiProviderEnum ; + rdfs:label "zenodo" ; + rdfs:subClassOf nmdc:DoiProviderEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_wall_share" ; - dcterms:title "rooms that share a wall with sampling room" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "rooms that share a wall with sampling room" ; - skos:definition "List of room(s) (room number, room name) sharing a wall with the sampling room" ; - skos:inScheme ; - nmdc:expected_value "room name;room number" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorCompTypeEnum ; + rdfs:label "metal covered" ; + rdfs:subClassOf nmdc:DoorCompTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "room_window_count" ; - dcterms:title "room window count" ; - rdfs:range linkml:Integer ; - rdfs:subPropertyOf ; - skos:altLabel "room window count" ; - skos:definition "Number of windows in the room" ; - skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorCompTypeEnum ; + rdfs:label "revolving" ; + rdfs:subClassOf nmdc:DoorCompTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "root_cond" ; - dcterms:title "rooting conditions" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "rooting conditions" ; - skos:definition "Relevant rooting conditions such as field plot size, sowing density, container dimensions, number of plants per container." ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI,url or free text" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorCompTypeEnum ; + rdfs:label "sliding" ; + rdfs:subClassOf nmdc:DoorCompTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "root_med_carbon" ; - dcterms:title "rooting medium carbon" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "rooting medium carbon" ; - skos:definition "Source of organic carbon in the culture rooting medium; e.g. sucrose." ; - skos:inScheme ; - nmdc:expected_value "carbon source name;measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter" . + a owl:Class, + nmdc:DoorCompTypeEnum ; + rdfs:label "telescopic" ; + rdfs:subClassOf nmdc:DoorCompTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "root_med_macronutr" ; - dcterms:title "rooting medium macronutrients" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "rooting medium macronutrients" ; - skos:definition "Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S); e.g. KH2PO4 (170¬†mg/L)." ; - skos:inScheme ; - nmdc:expected_value "macronutrient name;measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter" . + a owl:Class, + nmdc:DoorCondEnum ; + rdfs:label "damaged" ; + rdfs:subClassOf nmdc:DoorCondEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "root_med_micronutr" ; - dcterms:title "rooting medium micronutrients" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "rooting medium micronutrients" ; - skos:definition "Measurement of the culture rooting medium micronutrients (Fe, Mn, Zn, B, Cu, Mo); e.g. H3BO3 (6.2¬†mg/L)." ; - skos:inScheme ; - nmdc:expected_value "micronutrient name;measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter" . + a owl:Class, + nmdc:DoorCondEnum ; + rdfs:label "needs repair" ; + rdfs:subClassOf nmdc:DoorCondEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "root_med_ph" ; - dcterms:title "rooting medium pH" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "rooting medium pH" ; - skos:definition "pH measurement of the culture rooting medium; e.g. 5.5." ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorCondEnum ; + rdfs:label "new" ; + rdfs:subClassOf nmdc:DoorCondEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "root_med_regl" ; - dcterms:title "rooting medium regulators" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "rooting medium regulators" ; - skos:definition "Growth regulators in the culture rooting medium such as cytokinins, auxins, gybberellins, abscisic acid; e.g. 0.5¬†mg/L NAA." ; - skos:inScheme ; - nmdc:expected_value "regulator name;measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter" . + a owl:Class, + nmdc:DoorCondEnum ; + rdfs:label "rupture" ; + rdfs:subClassOf nmdc:DoorCondEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "root_med_solid" ; - dcterms:title "rooting medium solidifier" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "rooting medium solidifier" ; - skos:definition "Specification of the solidifying agent in the culture rooting medium; e.g. agar." ; - skos:inScheme ; - nmdc:expected_value "name" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorCondEnum ; + rdfs:label "visible wear" ; + rdfs:subClassOf nmdc:DoorCondEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "root_med_suppl" ; - dcterms:title "rooting medium organic supplements" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "rooting medium organic supplements" ; - skos:definition "Organic supplements of the culture rooting medium, such as vitamins, amino acids, organic acids, antibiotics activated charcoal; e.g. nicotinic acid (0.5¬†mg/L)." ; - skos:inScheme ; - nmdc:expected_value "supplement name;measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter" . + a owl:Class, + nmdc:DoorDirectEnum ; + rdfs:label "inward" ; + rdfs:subClassOf nmdc:DoorDirectEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "salinity" ; - dcterms:title "salinity" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "salinity" ; - skos:definition "The total concentration of all dissolved salts in a liquid or solid sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater." ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "practical salinity unit, percentage" . + a owl:Class, + nmdc:DoorDirectEnum ; + rdfs:label "outward" ; + rdfs:subClassOf nmdc:DoorDirectEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "salinity_meth" ; - dcterms:title "salinity method" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "salinity method" ; - skos:definition "Reference or method used in determining salinity" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorDirectEnum ; + rdfs:label "sideways" ; + rdfs:subClassOf nmdc:DoorDirectEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "salt_regm" ; - dcterms:title "salt regimen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "salt regimen" ; - skos:definition "Information about treatment involving use of salts as supplement to liquid and soil growth media; should include the name of salt, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple salt regimens" ; - skos:inScheme ; - nmdc:expected_value "salt name;salt amount;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "gram, microgram, mole per liter, gram per liter" . + a owl:Class, + nmdc:DoorLocEnum ; + rdfs:label "east" ; + rdfs:subClassOf nmdc:DoorLocEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_capt_status" ; - dcterms:title "sample capture status" ; - rdfs:range nmdc:SampCaptStatusEnum ; - rdfs:subPropertyOf ; - skos:altLabel "sample capture status" ; - skos:definition "Reason for the sample" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorLocEnum ; + rdfs:label "north" ; + rdfs:subClassOf nmdc:DoorLocEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_collec_device" ; - dcterms:title "sample collection device" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "sample collection device" ; - skos:definition "The device used to collect an environmental sample. This field accepts terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO). This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094)." ; - skos:inScheme ; - nmdc:expected_value "device name" . + a owl:Class, + nmdc:DoorLocEnum ; + rdfs:label "south" ; + rdfs:subClassOf nmdc:DoorLocEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_collec_method" ; - dcterms:title "sample collection method" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "sample collection method" ; - skos:definition "The method employed for collecting the sample." ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI,url , or text" . + a owl:Class, + nmdc:DoorLocEnum ; + rdfs:label "west" ; + rdfs:subClassOf nmdc:DoorLocEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_collect_point" ; - dcterms:title "sample collection point" ; - rdfs:range nmdc:SampCollectPointEnum ; - rdfs:subPropertyOf ; - skos:altLabel "sample collection point" ; - skos:definition "Sampling point on the asset were sample was collected (e.g. Wellhead, storage tank, separator, etc). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorMatEnum ; + rdfs:label "aluminum" ; + rdfs:subClassOf nmdc:DoorMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_dis_stage" ; - dcterms:title "sample disease stage" ; - rdfs:range nmdc:SampDisStageEnum ; - rdfs:subPropertyOf ; - skos:altLabel "sample disease stage" ; - skos:definition "Stage of the disease at the time of sample collection, e.g. inoculation, penetration, infection, growth and reproduction, dissemination of pathogen." ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorMatEnum ; + rdfs:label "cellular PVC" ; + rdfs:subClassOf nmdc:DoorMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_floor" ; - dcterms:title "sampling floor" ; - rdfs:range nmdc:SampFloorEnum ; - rdfs:subPropertyOf ; - skos:altLabel "sampling floor" ; - skos:definition "The floor of the building, where the sampling room is located" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorMatEnum ; + rdfs:label "engineered plastic" ; + rdfs:subClassOf nmdc:DoorMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_loc_corr_rate" ; - dcterms:title "corrosion rate at sample location" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "corrosion rate at sample location" ; - skos:definition "Metal corrosion rate is the speed of metal deterioration due to environmental conditions. As environmental conditions change corrosion rates change accordingly. Therefore, long term corrosion rates are generally more informative than short term rates and for that reason they are preferred during reporting. In the case of suspected MIC, corrosion rate measurements at the time of sampling might provide insights into the involvement of certain microbial community members in MIC as well as potential microbial interplays" ; - skos:inScheme ; - nmdc:expected_value "measurement value range" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "millimeter per year" . + a owl:Class, + nmdc:DoorMatEnum ; + rdfs:label "fiberboard" ; + rdfs:subClassOf nmdc:DoorMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_mat_process" ; - dcterms:title "sample material processing" ; - rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf ; - skos:altLabel "sample material processing" ; - skos:definition "A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed." ; - skos:inScheme ; - nmdc:expected_value "text" . + a owl:Class, + nmdc:DoorMatEnum ; + rdfs:label "fiberglass" ; + rdfs:subClassOf nmdc:DoorMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_md" ; - dcterms:title "sample measured depth" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "sample measured depth" ; - skos:definition "In non deviated well, measured depth is equal to the true vertical depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated wells, the MD is the length of trajectory of the borehole measured from the same reference or datum. Common datums used are ground level (GL), drilling rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:inScheme ; - nmdc:expected_value "measurement value;enumeration" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "meter" . + a owl:Class, + nmdc:DoorMatEnum ; + rdfs:label "metal" ; + rdfs:subClassOf nmdc:DoorMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_name" ; - dcterms:title "sample name" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "sample name" ; - skos:definition "A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name." ; - skos:inScheme ; - nmdc:expected_value "text" . + a owl:Class, + nmdc:DoorMatEnum ; + rdfs:label "thermoplastic alloy" ; + rdfs:subClassOf nmdc:DoorMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_preserv" ; - dcterms:title "preservative added to sample" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "preservative added to sample" ; - skos:definition "Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde, etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml)" ; - skos:inScheme ; - nmdc:expected_value "name;measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milliliter" . + a owl:Class, + nmdc:DoorMatEnum ; + rdfs:label "vinyl" ; + rdfs:subClassOf nmdc:DoorMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_room_id" ; - dcterms:title "sampling room ID or name" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "sampling room ID or name" ; - skos:definition "Sampling room number. This ID should be consistent with the designations on the building floor plans" ; - skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorMatEnum ; + rdfs:label "wood" ; + rdfs:subClassOf nmdc:DoorMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_size" ; - dcterms:title "amount or size of sample collected" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "amount or size of sample collected" ; - skos:definition "The total amount or size (volume (ml), mass (g) or area (m2) ) of sample collected." ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:preferred_unit "millliter, gram, milligram, liter" . + a owl:Class, + nmdc:DoorMatEnum ; + rdfs:label "wood/plastic composite" ; + rdfs:subClassOf nmdc:DoorMatEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_sort_meth" ; - dcterms:title "sample size sorting method" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "sample size sorting method" ; - skos:definition "Method by which samples are sorted; open face filter collecting total suspended particles, prefilter to remove particles larger than X micrometers in diameter, where common values of X would be 10 and 2.5 full size sorting in a cascade impactor." ; - skos:inScheme ; - nmdc:expected_value "description of method" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:DoorMoveEnum ; + rdfs:label "collapsible" ; + rdfs:subClassOf nmdc:DoorMoveEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_store_dur" ; - dcterms:title "sample storage duration" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "sample storage duration" ; - skos:definition "Duration for which the sample was stored" ; - skos:inScheme ; - nmdc:expected_value "duration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorMoveEnum ; + rdfs:label "folding" ; + rdfs:subClassOf nmdc:DoorMoveEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_store_loc" ; - dcterms:title "sample storage location" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "sample storage location" ; - skos:definition "Location at which sample was stored, usually name of a specific freezer/room" ; - skos:inScheme ; - nmdc:expected_value "location name" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorMoveEnum ; + rdfs:label "revolving" ; + rdfs:subClassOf nmdc:DoorMoveEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_store_temp" ; - dcterms:title "sample storage temperature" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "sample storage temperature" ; - skos:definition "Temperature at which sample was stored, e.g. -80 degree Celsius" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "degree Celsius" . + a owl:Class, + nmdc:DoorMoveEnum ; + rdfs:label "rolling shutter" ; + rdfs:subClassOf nmdc:DoorMoveEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_subtype" ; - dcterms:title "sample subtype" ; - rdfs:range nmdc:SampSubtypeEnum ; - rdfs:subPropertyOf ; - skos:altLabel "sample subtype" ; - skos:definition "Name of sample sub-type. For example if \"sample type\" is \"Produced Water\" then subtype could be \"Oil Phase\" or \"Water Phase\". If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorMoveEnum ; + rdfs:label "sliding" ; + rdfs:subClassOf nmdc:DoorMoveEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_taxon_id" ; - dcterms:title "Taxonomy ID of DNA sample" ; - rdfs:range nmdc:ControlledIdentifiedTermValue ; - rdfs:subPropertyOf ; - skos:altLabel "Taxonomy ID of DNA sample" ; - skos:definition "NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa sample. Use 'synthetic metagenome’ for mock community/positive controls, or 'blank sample' for negative controls." ; - skos:inScheme ; - skos:note "coal metagenome [NCBITaxon:1260732] would be a reasonable has_raw_value" ; - nmdc:expected_value "Taxonomy ID" . + a owl:Class, + nmdc:DoorMoveEnum ; + rdfs:label "swinging" ; + rdfs:subClassOf nmdc:DoorMoveEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_time_out" ; - dcterms:title "sampling time outside" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "sampling time outside" ; - skos:definition "The recent and long term history of outside sampling" ; - skos:inScheme ; - nmdc:expected_value "time" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "hour" . + a owl:Class, + nmdc:DoorTypeEnum ; + rdfs:label "composite" ; + rdfs:subClassOf nmdc:DoorTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_transport_cond" ; - dcterms:title "sample transport conditions" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "sample transport conditions" ; - skos:definition "Sample transport duration (in days or hrs) and temperature the sample was exposed to (e.g. 5.5 days; 20 ¬∞C)" ; - skos:inScheme ; - nmdc:expected_value "measurement value;measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "days;degree Celsius" . + a owl:Class, + nmdc:DoorTypeEnum ; + rdfs:label "metal" ; + rdfs:subClassOf nmdc:DoorTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_tvdss" ; - dcterms:title "sample true vertical depth subsea" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "sample true vertical depth subsea" ; - skos:definition "Depth of the sample i.e. The vertical distance between the sea level and the sampled position in the subsurface. Depth can be reported as an interval for subsurface samples e.g. 1325.75-1362.25 m" ; - skos:inScheme ; - nmdc:expected_value "measurement value or measurement value range" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "meter" . + a owl:Class, + nmdc:DoorTypeEnum ; + rdfs:label "wooden" ; + rdfs:subClassOf nmdc:DoorTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_type" ; - dcterms:title "sample type" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "sample type" ; - skos:definition "The type of material from which the sample was obtained. For the Hydrocarbon package, samples include types like core, rock trimmings, drill cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, produced water, injected water, swabs, etc. For the Food Package, samples are usually categorized as food, body products or tissues, or environmental material. This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)." ; - skos:inScheme ; - nmdc:expected_value "GENEPIO:0001246" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorTypeMetalEnum ; + rdfs:label "collapsible" ; + rdfs:subClassOf nmdc:DoorTypeMetalEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_vol_we_dna_ext" ; - dcterms:title "sample volume or weight for DNA extraction" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "sample volume or weight for DNA extraction" ; - skos:definition "Volume (ml) or mass (g) of total collected sample processed for DNA extraction. Note: total sample collected should be entered under the term Sample Size (MIXS:0000001)." ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:preferred_unit "millliter, gram, milligram, square centimeter" . + a owl:Class, + nmdc:DoorTypeMetalEnum ; + rdfs:label "corrugated steel" ; + rdfs:subClassOf nmdc:DoorTypeMetalEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_weather" ; - dcterms:title "sampling day weather" ; - rdfs:range nmdc:SampWeatherEnum ; - rdfs:subPropertyOf ; - skos:altLabel "sampling day weather" ; - skos:definition "The weather on the sampling day" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorTypeMetalEnum ; + rdfs:label "hollow" ; + rdfs:subClassOf nmdc:DoorTypeMetalEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "samp_well_name" ; - dcterms:title "sample well name" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "sample well name" ; - skos:definition "Name of the well (e.g. BXA1123) where sample was taken" ; - skos:inScheme ; - nmdc:expected_value "name" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorTypeMetalEnum ; + rdfs:label "rolling shutters" ; + rdfs:subClassOf nmdc:DoorTypeMetalEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "saturates_pc" ; - dcterms:title "saturates wt%" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "saturates wt%" ; - skos:definition "Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; - skos:inScheme ; - nmdc:expected_value "name;measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "percent" . + a owl:Class, + nmdc:DoorTypeMetalEnum ; + rdfs:label "steel plate" ; + rdfs:subClassOf nmdc:DoorTypeMetalEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "season" ; - dcterms:title "season" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "season" ; - skos:definition "The season when sampling occurred. Any of the four periods into which the year is divided by the equinoxes and solstices. This field accepts terms listed under season (http://purl.obolibrary.org/obo/NCIT_C94729)." ; - skos:inScheme ; - nmdc:expected_value "NCIT:C94729" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorTypeWoodEnum ; + rdfs:label "battened" ; + rdfs:subClassOf nmdc:DoorTypeWoodEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "season_environment" ; - dcterms:title "seasonal environment" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "seasonal environment" ; - skos:definition "Treatment involving an exposure to a particular season (e.g. Winter, summer, rabi, rainy etc.), treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment" ; - skos:inScheme ; - nmdc:expected_value "seasonal environment name;treatment interval and duration" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:DoorTypeWoodEnum ; + rdfs:label "bettened and ledged" ; + rdfs:subClassOf nmdc:DoorTypeWoodEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "season_precpt" ; - dcterms:title "mean seasonal precipitation" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "mean seasonal precipitation" ; - skos:definition "The average of all seasonal precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps." ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "millimeter" . + a owl:Class, + nmdc:DoorTypeWoodEnum ; + rdfs:label "flush" ; + rdfs:subClassOf nmdc:DoorTypeWoodEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "season_temp" ; - dcterms:title "mean seasonal temperature" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "mean seasonal temperature" ; - skos:definition "Mean seasonal temperature" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "degree Celsius" . + a owl:Class, + nmdc:DoorTypeWoodEnum ; + rdfs:label "framed and paneled" ; + rdfs:subClassOf nmdc:DoorTypeWoodEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "season_use" ; - dcterms:title "seasonal use" ; - rdfs:range nmdc:SeasonUseEnum ; - rdfs:subPropertyOf ; - skos:altLabel "seasonal use" ; - skos:definition "The seasons the space is occupied" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorTypeWoodEnum ; + rdfs:label "glashed or sash" ; + rdfs:subClassOf nmdc:DoorTypeWoodEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "secondary_treatment" ; - dcterms:title "secondary treatment" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "secondary treatment" ; - skos:definition "The process for substantially degrading the biological content of the sewage" ; - skos:inScheme ; - nmdc:expected_value "secondary treatment type" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorTypeWoodEnum ; + rdfs:label "ledged and braced" ; + rdfs:subClassOf nmdc:DoorTypeWoodEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sediment_type" ; - dcterms:title "sediment type" ; - rdfs:range nmdc:SedimentTypeEnum ; - rdfs:subPropertyOf ; - skos:altLabel "sediment type" ; - skos:definition "Information about the sediment type based on major constituents" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorTypeWoodEnum ; + rdfs:label "ledged and framed" ; + rdfs:subClassOf nmdc:DoorTypeWoodEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "seq_meth" ; - dcterms:title "sequencing method" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "sequencing method" ; - skos:definition "Sequencing machine used. Where possible the term should be taken from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)." ; - skos:inScheme ; - nmdc:expected_value "Text or OBI" . + a owl:Class, + nmdc:DoorTypeWoodEnum ; + rdfs:label "ledged, braced and frame" ; + rdfs:subClassOf nmdc:DoorTypeWoodEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "seq_quality_check" ; - dcterms:title "sequence quality check" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "sequence quality check" ; - skos:definition "Indicate if the sequence has been called by automatic systems (none) or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms). Applied only for sequences that are not submitted to SRA,ENA or DRA" ; - skos:inScheme ; - nmdc:expected_value "none or manually edited" . + a owl:Class, + nmdc:DoorTypeWoodEnum ; + rdfs:label "louvered" ; + rdfs:subClassOf nmdc:DoorTypeWoodEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sewage_type" ; - dcterms:title "sewage type" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "sewage type" ; - skos:definition "Type of wastewater treatment plant as municipial or industrial" ; - skos:inScheme ; - nmdc:expected_value "sewage type name" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DoorTypeWoodEnum ; + rdfs:label "wire gauged" ; + rdfs:subClassOf nmdc:DoorTypeWoodEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "shad_dev_water_mold" ; - dcterms:title "shading device signs of water/mold" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "shading device signs of water/mold" ; - skos:definition "Signs of the presence of mold or mildew on the shading device" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DrainageClassEnum ; + rdfs:label "excessively drained" ; + rdfs:subClassOf nmdc:DrainageClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "shading_device_cond" ; - dcterms:title "shading device condition" ; - rdfs:range nmdc:ShadingDeviceCondEnum ; - rdfs:subPropertyOf ; - skos:altLabel "shading device condition" ; - skos:definition "The physical condition of the shading device at the time of sampling" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DrainageClassEnum ; + rdfs:label "moderately well" ; + rdfs:subClassOf nmdc:DrainageClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "shading_device_loc" ; - dcterms:title "shading device location" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "shading device location" ; - skos:definition "The location of the shading device in relation to the built structure" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DrainageClassEnum ; + rdfs:label "poorly" ; + rdfs:subClassOf nmdc:DrainageClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "shading_device_mat" ; - dcterms:title "shading device material" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "shading device material" ; - skos:definition "The material the shading device is composed of" ; - skos:inScheme ; - nmdc:expected_value "material name" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DrainageClassEnum ; + rdfs:label "somewhat poorly" ; + rdfs:subClassOf nmdc:DrainageClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "shading_device_type" ; - dcterms:title "shading device type" ; - rdfs:range nmdc:ShadingDeviceTypeEnum ; - rdfs:subPropertyOf ; - skos:altLabel "shading device type" ; - skos:definition "The type of shading device" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DrainageClassEnum ; + rdfs:label "very poorly" ; + rdfs:subClassOf nmdc:DrainageClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sieving" ; - dcterms:title "composite design/sieving" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "composite design/sieving" ; - skos:definition "Collection design of pooled samples and/or sieve size and amount of sample sieved" ; - skos:inScheme ; - nmdc:expected_value "design name and/or size;amount" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:DrainageClassEnum ; + rdfs:label "well" ; + rdfs:subClassOf nmdc:DrainageClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "silicate" ; - dcterms:title "silicate" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "silicate" ; - skos:definition "Concentration of silicate" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter" . + a owl:Class, + nmdc:DrawingsEnum ; + rdfs:label "as built" ; + rdfs:subClassOf nmdc:DrawingsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "size_frac" ; - dcterms:title "size fraction selected" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "size fraction selected" ; - skos:definition "Filtering pore size used in sample preparation" ; - skos:inScheme ; - nmdc:expected_value "filter size value range" . + a owl:Class, + nmdc:DrawingsEnum ; + rdfs:label "bid" ; + rdfs:subClassOf nmdc:DrawingsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "size_frac_low" ; - dcterms:title "size-fraction lower threshold" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "size-fraction lower threshold" ; - skos:definition "Refers to the mesh/pore size used to pre-filter/pre-sort the sample. Materials larger than the size threshold are excluded from the sample" ; - skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micrometer" . + a owl:Class, + nmdc:DrawingsEnum ; + rdfs:label "building navigation map" ; + rdfs:subClassOf nmdc:DrawingsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "size_frac_up" ; - dcterms:title "size-fraction upper threshold" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "size-fraction upper threshold" ; - skos:definition "Refers to the mesh/pore size used to retain the sample. Materials smaller than the size threshold are excluded from the sample" ; - skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micrometer" . + a owl:Class, + nmdc:DrawingsEnum ; + rdfs:label "construction" ; + rdfs:subClassOf nmdc:DrawingsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "slope_aspect" ; - dcterms:title "slope aspect" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "slope aspect" ; - skos:definition "The direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees); e.g., nw or 315 degrees. This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration." ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "degree" . + a owl:Class, + nmdc:DrawingsEnum ; + rdfs:label "design" ; + rdfs:subClassOf nmdc:DrawingsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "slope_gradient" ; - dcterms:title "slope gradient" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "slope gradient" ; - skos:definition "Commonly called 'slope'. The angle between ground surface and a horizontal line (in percent). This is the direction that overland water would flow. This measure is usually taken with a hand level meter or clinometer" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "percentage" . + a owl:Class, + nmdc:DrawingsEnum ; + rdfs:label "diagram" ; + rdfs:subClassOf nmdc:DrawingsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sludge_retent_time" ; - dcterms:title "sludge retention time" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "sludge retention time" ; - skos:definition "The time activated sludge remains in reactor" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "hours" . + a owl:Class, + nmdc:DrawingsEnum ; + rdfs:label "operation" ; + rdfs:subClassOf nmdc:DrawingsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sodium" ; - dcterms:title "sodium" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "sodium" ; - skos:definition "Sodium concentration in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter, parts per million" . + a owl:Class, + nmdc:DrawingsEnum ; + rdfs:label "sketch" ; + rdfs:subClassOf nmdc:DrawingsEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "soil_horizon" ; - dcterms:title "soil horizon" ; - rdfs:range nmdc:SoilHorizonEnum ; - rdfs:subPropertyOf ; - skos:altLabel "soil horizon" ; - skos:definition "Specific layer in the land area which measures parallel to the soil surface and possesses physical characteristics which differ from the layers above and beneath" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:ExtWallOrientEnum ; + rdfs:label "east" ; + rdfs:subClassOf nmdc:ExtWallOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "soil_text_measure" ; - dcterms:title "soil texture measurement" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "soil texture measurement" ; - skos:definition "The relative proportion of different grain sizes of mineral particles in a soil, as described using a standard system; express as % sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty clay loam) optional." ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:ExtWallOrientEnum ; + rdfs:label "north" ; + rdfs:subClassOf nmdc:ExtWallOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "soil_texture_meth" ; - dcterms:title "soil texture method" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "soil texture method" ; - skos:definition "Reference or method used in determining soil texture" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:ExtWallOrientEnum ; + rdfs:label "northeast" ; + rdfs:subClassOf nmdc:ExtWallOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "soil_type" ; - dcterms:title "soil type" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "soil type" ; - skos:definition "Description of the soil type or classification. This field accepts terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple terms can be separated by pipes." ; - skos:inScheme ; - nmdc:expected_value "ENVO_00001998" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:ExtWallOrientEnum ; + rdfs:label "northwest" ; + rdfs:subClassOf nmdc:ExtWallOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "soil_type_meth" ; - dcterms:title "soil type method" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "soil type method" ; - skos:definition "Reference or method used in determining soil series name or other lower-level classification" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:ExtWallOrientEnum ; + rdfs:label "south" ; + rdfs:subClassOf nmdc:ExtWallOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "solar_irradiance" ; - dcterms:title "solar irradiance" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "solar irradiance" ; - skos:definition "The amount of solar energy that arrives at a specific area of a surface during a specific time interval" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "kilowatts per square meter per day, ergs per square centimeter per second" . + a owl:Class, + nmdc:ExtWallOrientEnum ; + rdfs:label "southeast" ; + rdfs:subClassOf nmdc:ExtWallOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "soluble_inorg_mat" ; - dcterms:title "soluble inorganic material" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "soluble inorganic material" ; - skos:definition "Concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc." ; - skos:inScheme ; - nmdc:expected_value "soluble inorganic material name;measurement value" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "gram, microgram, mole per liter, gram per liter, parts per million" . + a owl:Class, + nmdc:ExtWallOrientEnum ; + rdfs:label "southwest" ; + rdfs:subClassOf nmdc:ExtWallOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "soluble_org_mat" ; - dcterms:title "soluble organic material" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "soluble organic material" ; - skos:definition "Concentration of substances such as urea, fruit sugars, soluble proteins, drugs, pharmaceuticals, etc." ; - skos:inScheme ; - nmdc:expected_value "soluble organic material name;measurement value" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "gram, microgram, mole per liter, gram per liter, parts per million" . + a owl:Class, + nmdc:ExtWallOrientEnum ; + rdfs:label "west" ; + rdfs:subClassOf nmdc:ExtWallOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "soluble_react_phosp" ; - dcterms:title "soluble reactive phosphorus" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "soluble reactive phosphorus" ; - skos:definition "Concentration of soluble reactive phosphorus" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . + a owl:Class, + nmdc:ExtWindowOrientEnum ; + rdfs:label "east" ; + rdfs:subClassOf nmdc:ExtWindowOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "source_mat_id" ; - dcterms:title "source material identifiers" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "source material identifiers" ; - skos:definition "A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen voucher and sampled tissue with the same identifier. However, the /culture_collection qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id would refer to an identifier from some derived culture from which the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2)." ; - skos:inScheme ; - nmdc:expected_value "for cultures of microorganisms: identifiers for two culture collections; for other material a unique arbitrary identifer" . + a owl:Class, + nmdc:ExtWindowOrientEnum ; + rdfs:label "north" ; + rdfs:subClassOf nmdc:ExtWindowOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "space_typ_state" ; - dcterms:title "space typical state" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "space typical state" ; - skos:definition "Customary or normal state of the space" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:ExtWindowOrientEnum ; + rdfs:label "northeast" ; + rdfs:subClassOf nmdc:ExtWindowOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "specific" ; - dcterms:title "specifications" ; - rdfs:range nmdc:SpecificEnum ; - rdfs:subPropertyOf ; - skos:altLabel "specifications" ; - skos:definition "The building specifications. If design is chosen, indicate phase: conceptual, schematic, design development, construction documents" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:ExtWindowOrientEnum ; + rdfs:label "northwest" ; + rdfs:subClassOf nmdc:ExtWindowOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "specific_humidity" ; - dcterms:title "specific humidity" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "specific humidity" ; - skos:definition "The mass of water vapour in a unit mass of moist air, usually expressed as grams of vapour per kilogram of air, or, in air conditioning, as grains per pound." ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "gram of air, kilogram of air" . + a owl:Class, + nmdc:ExtWindowOrientEnum ; + rdfs:label "south" ; + rdfs:subClassOf nmdc:ExtWindowOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sr_dep_env" ; - dcterms:title "source rock depositional environment" ; - rdfs:range nmdc:SrDepEnvEnum ; - rdfs:subPropertyOf ; - skos:altLabel "source rock depositional environment" ; - skos:definition "Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:ExtWindowOrientEnum ; + rdfs:label "southeast" ; + rdfs:subClassOf nmdc:ExtWindowOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sr_geol_age" ; - dcterms:title "source rock geological age" ; - rdfs:range nmdc:SrGeolAgeEnum ; - rdfs:subPropertyOf ; - skos:altLabel "source rock geological age" ; - skos:definition "Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:ExtWindowOrientEnum ; + rdfs:label "southwest" ; + rdfs:subClassOf nmdc:ExtWindowOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sr_kerog_type" ; - dcterms:title "source rock kerogen type" ; - rdfs:range nmdc:SrKerogTypeEnum ; - rdfs:subPropertyOf ; - skos:altLabel "source rock kerogen type" ; - skos:definition "Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/ fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris (terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:ExtWindowOrientEnum ; + rdfs:label "west" ; + rdfs:subClassOf nmdc:ExtWindowOrientEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sr_lithology" ; - dcterms:title "source rock lithology" ; - rdfs:range nmdc:SrLithologyEnum ; - rdfs:subPropertyOf ; - skos:altLabel "source rock lithology" ; - skos:definition "Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:ExtractionTargetEnum ; + rdfs:label "DNA" ; + rdfs:subClassOf nmdc:ExtractionTargetEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "standing_water_regm" ; - dcterms:title "standing water regimen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "standing water regimen" ; - skos:definition "Treatment involving an exposure to standing water during a plant's life span, types can be flood water or standing water, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; - skos:inScheme ; - nmdc:expected_value "standing water type;treatment interval and duration" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:ExtractionTargetEnum ; + rdfs:label "RNA" ; + rdfs:subClassOf nmdc:ExtractionTargetEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "store_cond" ; - dcterms:title "storage conditions" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "storage conditions" ; - skos:definition "Explain how and for how long the soil sample was stored before DNA extraction (fresh/frozen/other)." ; - skos:inScheme ; - nmdc:expected_value "storage condition type;duration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:ExtractionTargetEnum ; + rdfs:label "metabolite" ; + rdfs:subClassOf nmdc:ExtractionTargetEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "substructure_type" ; - dcterms:title "substructure type" ; - rdfs:range nmdc:SubstructureTypeEnum ; - rdfs:subPropertyOf ; - skos:altLabel "substructure type" ; - skos:definition "The substructure or under building is that largely hidden section of the building which is built off the foundations to the ground floor level" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:ExtractionTargetEnum ; + rdfs:label "protein" ; + rdfs:subClassOf nmdc:ExtractionTargetEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sulfate" ; - dcterms:title "sulfate" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "sulfate" ; - skos:definition "Concentration of sulfate in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Acrisols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sulfate_fw" ; - dcterms:title "sulfate in formation water" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "sulfate in formation water" ; - skos:definition "Original sulfate concentration in the hydrocarbon resource" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Andosols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sulfide" ; - dcterms:title "sulfide" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "sulfide" ; - skos:definition "Concentration of sulfide in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Arenosols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "surf_air_cont" ; - dcterms:title "surface-air contaminant" ; - rdfs:range nmdc:SurfAirContEnum ; - rdfs:subPropertyOf ; - skos:altLabel "surface-air contaminant" ; - skos:definition "Contaminant identified on surface" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Cambisols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "surf_humidity" ; - dcterms:title "surface humidity" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "surface humidity" ; - skos:definition "Surfaces: water activity as a function of air and material moisture" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "percentage" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Chernozems" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "surf_material" ; - dcterms:title "surface material" ; - rdfs:range nmdc:SurfMaterialEnum ; - rdfs:subPropertyOf ; - skos:altLabel "surface material" ; - skos:definition "Surface materials at the point of sampling" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Ferralsols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "surf_moisture" ; - dcterms:title "surface moisture" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "surface moisture" ; - skos:definition "Water held on a surface" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "parts per million, gram per cubic meter, gram per square meter" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Fluvisols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "surf_moisture_ph" ; - dcterms:title "surface moisture pH" ; - rdfs:range linkml:Double ; - rdfs:subPropertyOf ; - skos:altLabel "surface moisture pH" ; - skos:definition "ph measurement of surface" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Gleysols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "surf_temp" ; - dcterms:title "surface temperature" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "surface temperature" ; - skos:definition "Temperature of the surface at the time of sampling" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "degree Celsius" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Greyzems" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "suspend_part_matter" ; - dcterms:title "suspended particulate matter" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "suspended particulate matter" ; - skos:definition "Concentration of suspended particulate matter" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Gypsisols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "suspend_solids" ; - dcterms:title "suspended solids" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "suspended solids" ; - skos:definition "Concentration of substances including a wide variety of material, such as silt, decaying plant and animal matter; can include multiple substances" ; - skos:inScheme ; - nmdc:expected_value "suspended solid name;measurement value" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "gram, microgram, milligram per liter, mole per liter, gram per liter, part per million" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Histosols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tan" ; - dcterms:title "total acid number" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "total acid number" ; - skos:definition "Total Acid Number¬†(TAN) is a measurement of acidity that is determined by the amount of¬†potassium hydroxide¬†in milligrams that is needed to neutralize the acids in one gram of oil.¬†It is an important quality measurement of¬†crude oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Kastanozems" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "target_gene" ; - dcterms:title "target gene" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "target gene" ; - skos:definition "Targeted gene or locus name for marker gene studies" ; - skos:inScheme ; - nmdc:expected_value "gene name" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Lithosols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "target_subfragment" ; - dcterms:title "target subfragment" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "target subfragment" ; - skos:definition "Name of subfragment of a gene or locus. Important to e.g. identify special regions on marker genes like V6 on 16S rRNA" ; - skos:inScheme ; - nmdc:expected_value "gene fragment name" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Luvisols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "temp" ; - dcterms:title "temperature" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "temperature" ; - skos:definition "Temperature of the sample at the time of sampling." ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:preferred_unit "degree Celsius" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Nitosols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "temp_out" ; - dcterms:title "temperature outside house" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "temperature outside house" ; - skos:definition "The recorded temperature value at sampling time outside" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "degree Celsius" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Phaeozems" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tertiary_treatment" ; - dcterms:title "tertiary treatment" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "tertiary treatment" ; - skos:definition "The process providing a final treatment stage to raise the effluent quality before it is discharged to the receiving environment" ; - skos:inScheme ; - nmdc:expected_value "tertiary treatment type" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Planosols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tidal_stage" ; - dcterms:title "tidal stage" ; - rdfs:range nmdc:TidalStageEnum ; - rdfs:subPropertyOf ; - skos:altLabel "tidal stage" ; - skos:definition "Stage of tide" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Podzols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tillage" ; - dcterms:title "history/tillage" ; - rdfs:range nmdc:TillageEnum ; - rdfs:subPropertyOf ; - skos:altLabel "history/tillage" ; - skos:definition "Note method(s) used for tilling" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "m" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Podzoluvisols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tiss_cult_growth_med" ; - dcterms:title "tissue culture growth media" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "tissue culture growth media" ; - skos:definition "Description of plant tissue culture growth media used" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI,url or free text" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Rankers" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "toluene" ; - dcterms:title "toluene" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "toluene" ; - skos:definition "Concentration of toluene in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter, parts per million" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Regosols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tot_carb" ; - dcterms:title "total carbon" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "total carbon" ; - skos:definition "Total carbon content" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Rendzinas" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tot_depth_water_col" ; - dcterms:title "total depth of water column" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "total depth of water column" ; - skos:definition "Measurement of total depth of water column" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "meter" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Solonchaks" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tot_diss_nitro" ; - dcterms:title "total dissolved nitrogen" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "total dissolved nitrogen" ; - skos:definition "Total dissolved nitrogen concentration, reported as nitrogen, measured by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Solonetz" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tot_inorg_nitro" ; - dcterms:title "total inorganic nitrogen" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "total inorganic nitrogen" ; - skos:definition "Total inorganic nitrogen content" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Vertisols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tot_iron" ; - dcterms:title "total iron" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "total iron" ; - skos:definition "Concentration of total iron in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter, milligram per kilogram" . + a owl:Class, + nmdc:FaoClassEnum ; + rdfs:label "Yermosols" ; + rdfs:subClassOf nmdc:FaoClassEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tot_nitro" ; - dcterms:title "total nitrogen concentration" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "total nitrogen concentration" ; - skos:definition "Total nitrogen concentration of water samples, calculated by: total nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured without filtering, reported as nitrogen" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter, micromole per liter, milligram per liter" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Annotation Amino Acid FASTA" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tot_nitro_cont_meth" ; - dcterms:title "total nitrogen content method" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "total nitrogen content method" ; - skos:definition "Reference or method used in determining the total nitrogen" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Annotation Enzyme Commission" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tot_nitro_content" ; - dcterms:title "total nitrogen content" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "total nitrogen content" ; - skos:definition "Total nitrogen content of the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter, micromole per liter, milligram per liter" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Annotation Info File" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tot_org_c_meth" ; - dcterms:title "total organic carbon method" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "total organic carbon method" ; - skos:definition "Reference or method used in determining total organic carbon" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Annotation KEGG Orthology" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tot_org_carb" ; - dcterms:title "total organic carbon" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "total organic carbon" ; - skos:definition "Definition for soil: total organic carbon content of the soil, definition otherwise: total organic carbon content" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "gram Carbon per kilogram sample material" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Annotation Statistics" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tot_part_carb" ; - dcterms:title "total particulate carbon" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "total particulate carbon" ; - skos:definition "Total particulate carbon content" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter, micromole per liter" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Assembly AGP" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tot_phosp" ; - dcterms:title "total phosphorus" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "total phosphorus" ; - skos:definition "Total phosphorus concentration in the sample, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Assembly Contigs" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tot_phosphate" ; - dcterms:title "total phosphate" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "total phosphate" ; - skos:definition "Total amount or concentration of phosphate" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "microgram per liter, micromole per liter" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Assembly Coverage BAM" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tot_sulfur" ; - dcterms:title "total sulfur" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "total sulfur" ; - skos:definition "Concentration of total sulfur in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter, parts per million" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Assembly Coverage Stats" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "train_line" ; - dcterms:title "train line" ; - rdfs:range nmdc:TrainLineEnum ; - rdfs:subPropertyOf ; - skos:altLabel "train line" ; - skos:definition "The subway line name" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Assembly Info File" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "train_stat_loc" ; - dcterms:title "train station collection location" ; - rdfs:range nmdc:TrainStatLocEnum ; - rdfs:subPropertyOf ; - skos:altLabel "train station collection location" ; - skos:definition "The train station collection location" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Assembly Scaffolds" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "train_stop_loc" ; - dcterms:title "train stop collection location" ; - rdfs:range nmdc:TrainStopLocEnum ; - rdfs:subPropertyOf ; - skos:altLabel "train stop collection location" ; - skos:definition "The train stop collection location" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "CATH FunFams (Functional Families) Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "turbidity" ; - dcterms:title "turbidity" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "turbidity" ; - skos:definition "Measure of the amount of cloudiness or haziness in water caused by individual particles" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "formazin turbidity unit, formazin nephelometric units" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "CRT Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tvdss_of_hcr_press" ; - dcterms:title "depth (TVDSS) of hydrocarbon resource pressure" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "depth (TVDSS) of hydrocarbon resource pressure" ; - skos:definition "True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original pressure was measured (e.g. 1578 m)." ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "meter" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Centrifuge Classification Report" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "tvdss_of_hcr_temp" ; - dcterms:title "depth (TVDSS) of hydrocarbon resource temperature" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "depth (TVDSS) of hydrocarbon resource temperature" ; - skos:definition "True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original temperature was measured (e.g. 1345 m)." ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "meter" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Centrifuge Krona Plot" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "typ_occup_density" ; - dcterms:title "typical occupant density" ; - rdfs:range linkml:Double ; - rdfs:subPropertyOf ; - skos:altLabel "typical occupant density" ; - skos:definition "Customary or normal density of occupants" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Centrifuge Taxonomic Classification" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ventilation_rate" ; - dcterms:title "ventilation rate" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "ventilation rate" ; - skos:definition "Ventilation rate of the system in the sampled premises" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "cubic meter per minute, liters per second" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Centrifuge output report file" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ventilation_type" ; - dcterms:title "ventilation type" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "ventilation type" ; - skos:definition "Ventilation system used in the sampled premises" ; - skos:inScheme ; - nmdc:expected_value "ventilation type name" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "CheckM Statistics" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "vfa" ; - dcterms:title "volatile fatty acids" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "volatile fatty acids" ; - skos:definition "Concentration of Volatile Fatty Acids in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter, parts per million" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Clusters of Orthologous Groups (COG) Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "vfa_fw" ; - dcterms:title "vfa in formation water" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "vfa in formation water" ; - skos:definition "Original volatile fatty acid concentration in the hydrocarbon resource" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Contig Mapping File" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "vis_media" ; - dcterms:title "visual media" ; - rdfs:range nmdc:VisMediaEnum ; - rdfs:subPropertyOf ; - skos:altLabel "visual media" ; - skos:definition "The building visual media" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Crispr Terms" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "viscosity" ; - dcterms:title "viscosity" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "viscosity" ; - skos:definition "A measure of oil's resistance¬†to gradual deformation by¬†shear stress¬†or¬†tensile stress (e.g. 3.5 cp; 100 ¬∞C)" ; - skos:inScheme ; - nmdc:expected_value "measurement value;measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "cP at degree Celsius" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Direct Infusion FT ICR-MS Raw Data" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "volatile_org_comp" ; - dcterms:title "volatile organic compounds" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "volatile organic compounds" ; - skos:definition "Concentration of carbon-based chemicals that easily evaporate at room temperature; can report multiple volatile organic compounds by entering numeric values preceded by name of compound" ; - skos:inScheme ; - nmdc:expected_value "volatile organic compound name;measurement value" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "microgram per cubic meter, parts per million, nanogram per liter" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Error Corrected Reads" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "wall_area" ; - dcterms:title "wall area" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "wall area" ; - skos:definition "The total area of the sampled room's walls" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "square meter" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "FT ICR-MS Analysis Results" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "wall_const_type" ; - dcterms:title "wall construction type" ; - rdfs:range nmdc:WallConstTypeEnum ; - rdfs:subPropertyOf ; - skos:altLabel "wall construction type" ; - skos:definition "The building class of the wall defined by the composition of the building elements and fire-resistance rating." ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Filtered Sequencing Reads" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "wall_finish_mat" ; - dcterms:title "wall finish material" ; - rdfs:range nmdc:WallFinishMatEnum ; - rdfs:subPropertyOf ; - skos:altLabel "wall finish material" ; - skos:definition "The material utilized to finish the outer most layer of the wall" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Functional Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "wall_height" ; - dcterms:title "wall height" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "wall height" ; - skos:definition "The average height of the walls in the sampled room" ; - skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "centimeter" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "GC-MS Metabolomics Results" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "wall_loc" ; - dcterms:title "wall location" ; - rdfs:range nmdc:WallLocEnum ; - rdfs:subPropertyOf ; - skos:altLabel "wall location" ; - skos:definition "The relative location of the wall within the room" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "GOTTCHA2 Classification Report" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "wall_surf_treatment" ; - dcterms:title "wall surface treatment" ; - rdfs:range nmdc:WallSurfTreatmentEnum ; - rdfs:subPropertyOf ; - skos:altLabel "wall surface treatment" ; - skos:definition "The surface treatment of interior wall" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "GOTTCHA2 Krona Plot" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "wall_texture" ; - dcterms:title "wall texture" ; - rdfs:range nmdc:WallTextureEnum ; - rdfs:subPropertyOf ; - skos:altLabel "wall texture" ; - skos:definition "The feel, appearance, or consistency of a wall surface" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "GOTTCHA2 Report Full" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "wall_thermal_mass" ; - dcterms:title "wall thermal mass" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "wall thermal mass" ; - skos:definition "The ability of the wall to provide inertia against temperature fluctuations. Generally this means concrete or concrete block that is either exposed or covered only with paint" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "joule per degree Celsius" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "GTDBTK Archaeal Summary" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "wall_water_mold" ; - dcterms:title "wall signs of water/mold" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "wall signs of water/mold" ; - skos:definition "Signs of the presence of mold or mildew on a wall" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "GTDBTK Bacterial Summary" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "wastewater_type" ; - dcterms:title "wastewater type" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "wastewater type" ; - skos:definition "The origin of wastewater such as human waste, rainfall, storm drains, etc." ; - skos:inScheme ; - nmdc:expected_value "wastewater type name" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Gene Phylogeny tsv" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "water_cont_soil_meth" ; - dcterms:title "water content method" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf ; - skos:altLabel "water content method" ; - skos:definition "Reference or method used in determining the water content of soil" ; - skos:inScheme ; - nmdc:expected_value "PMID,DOI or url" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Genemark Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "water_content" ; - dcterms:title "water content" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "water content" ; - skos:definition "Water content measurement" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "gram per gram or cubic centimeter per cubic centimeter" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "KO_EC Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "water_current" ; - dcterms:title "water current" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "water current" ; - skos:definition "Measurement of magnitude and direction of flow within a fluid" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "cubic meter per second, knots" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Kraken2 Classification Report" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "water_cut" ; - dcterms:title "water cut" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "water cut" ; - skos:definition "Current amount of water (%) in a produced fluid stream; or the average of the combined streams" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "percent" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Kraken2 Krona Plot" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "water_feat_size" ; - dcterms:title "water feature size" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "water feature size" ; - skos:definition "The size of the water feature" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "square meter" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Kraken2 Taxonomic Classification" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "water_feat_type" ; - dcterms:title "water feature type" ; - rdfs:range nmdc:WaterFeatTypeEnum ; - rdfs:subPropertyOf ; - skos:altLabel "water feature type" ; - skos:definition "The type of water feature present within the building being sampled" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Metagenome Bins" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "water_prod_rate" ; - dcterms:title "water production rate" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "water production rate" ; - skos:definition "Water production rates per well (e.g. 987 m3 / day)" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "cubic meter per day" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Metagenome Bins Compression File" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "water_temp_regm" ; - dcterms:title "water temperature regimen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "water temperature regimen" ; - skos:definition "Information about treatment involving an exposure to water with varying degree of temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; - skos:inScheme ; - nmdc:expected_value "measurement value;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "degree Celsius" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Metagenome Bins Info File" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "watering_regm" ; - dcterms:title "watering regimen" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "watering regimen" ; - skos:definition "Information about treatment involving an exposure to watering frequencies, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; - skos:inScheme ; - nmdc:expected_value "measurement value;treatment interval and duration" ; - nmdc:occurrence "m" ; - nmdc:preferred_unit "milliliter, liter" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Metagenome Raw Read 1" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "weekday" ; - dcterms:title "weekday" ; - rdfs:range nmdc:WeekdayEnum ; - rdfs:subPropertyOf ; - skos:altLabel "weekday" ; - skos:definition "The day of the week when sampling occurred" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Metagenome Raw Read 2" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "win" ; - dcterms:title "well identification number" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "well identification number" ; - skos:definition "A unique identifier of a well or wellbore. This is part of the Global Framework for Well Identification initiative which is compiled by the Professional Petroleum Data Management Association (PPDM) in an effort to improve well identification systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)" ; - skos:inScheme ; - nmdc:expected_value "text" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Metagenome Raw Reads" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "wind_direction" ; - dcterms:title "wind direction" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "wind direction" ; - skos:definition "Wind direction is the direction from which a wind originates" ; - skos:inScheme ; - nmdc:expected_value "wind direction name" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Metaproteomics Workflow Statistics" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "wind_speed" ; - dcterms:title "wind speed" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "wind speed" ; - skos:definition "Speed of wind measured at the time of sampling" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "meter per second, kilometer per hour" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Misc Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "window_cond" ; - dcterms:title "window condition" ; - rdfs:range nmdc:WindowCondEnum ; - rdfs:subPropertyOf ; - skos:altLabel "window condition" ; - skos:definition "The physical condition of the window at the time of sampling" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Peptide Report" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "window_cover" ; - dcterms:title "window covering" ; - rdfs:range nmdc:WindowCoverEnum ; - rdfs:subPropertyOf ; - skos:altLabel "window covering" ; - skos:definition "The type of window covering" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Pfam Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "window_horiz_pos" ; - dcterms:title "window horizontal position" ; - rdfs:range nmdc:WindowHorizPosEnum ; - rdfs:subPropertyOf ; - skos:altLabel "window horizontal position" ; - skos:definition "The horizontal position of the window on the wall" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Prodigal Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "window_loc" ; - dcterms:title "window location" ; - rdfs:range nmdc:WindowLocEnum ; - rdfs:subPropertyOf ; - skos:altLabel "window location" ; - skos:definition "The relative location of the window within the room" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Product Names" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "window_mat" ; - dcterms:title "window material" ; - rdfs:range nmdc:WindowMatEnum ; - rdfs:subPropertyOf ; - skos:altLabel "window material" ; - skos:definition "The type of material used to finish a window" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Protein Report" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "window_open_freq" ; - dcterms:title "window open frequency" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "window open frequency" ; - skos:definition "The number of times windows are opened per week" ; - skos:inScheme ; - nmdc:expected_value "value" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "QC Statistics" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "window_size" ; - dcterms:title "window area/size" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "window area/size" ; - skos:definition "The window's length and width" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "inch, meter" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "QC Statistics Extended" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "window_status" ; - dcterms:title "window status" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "window status" ; - skos:definition "Defines whether the windows were open or closed during environmental testing" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "QC non-rRNA R1" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "window_type" ; - dcterms:title "window type" ; - rdfs:range nmdc:WindowTypeEnum ; - rdfs:subPropertyOf ; - skos:altLabel "window type" ; - skos:definition "The type of windows" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "QC non-rRNA R2" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "window_vert_pos" ; - dcterms:title "window vertical position" ; - rdfs:range nmdc:WindowVertPosEnum ; - rdfs:subPropertyOf ; - skos:altLabel "window vertical position" ; - skos:definition "The vertical position of the window on the wall" ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "RFAM Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "window_water_mold" ; - dcterms:title "window signs of water/mold" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf ; - skos:altLabel "window signs of water/mold" ; - skos:definition "Signs of the presence of mold or mildew on the window." ; - skos:inScheme ; - nmdc:expected_value "enumeration" ; - nmdc:occurrence "1" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Read Based Analysis Info File" ; + rdfs:subClassOf nmdc:FileTypeEnum . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "xylene" ; - dcterms:title "xylene" ; - rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf ; - skos:altLabel "xylene" ; - skos:definition "Concentration of xylene in the sample" ; - skos:inScheme ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "milligram per liter, parts per million" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Read Count and RPKM" ; + rdfs:subClassOf nmdc:FileTypeEnum . -nmdc:AnalyticalSample a owl:Class, - linkml:ClassDefinition ; - rdfs:label "AnalyticalSample" ; - dcterms:title "Analytical Sample" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - nmdc:MaterialEntity ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Read Filtering Info File" ; + rdfs:subClassOf nmdc:FileTypeEnum . -nmdc:BooleanValue a owl:Class, - linkml:ClassDefinition ; - rdfs:label "BooleanValue" ; - rdfs:subClassOf nmdc:AttributeValue ; - skos:definition "A value that is a boolean" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "SMART Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . -nmdc:DataGeneratingInstrument a owl:Class, - linkml:ClassDefinition ; - rdfs:label "DataGeneratingInstrument" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - nmdc:InstrumentMixin, - nmdc:NamedThing ; - skos:definition "An identified thing that is capable of generating scientific data" ; - skos:inScheme nmdc:core ; - skos:note "Likely a capital investment. One would want to say \"I used this serial number\"" . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "SUPERFam Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . -nmdc:EnvironmentalMaterialTerm a owl:Class, - linkml:ClassDefinition ; - rdfs:label "EnvironmentalMaterialTerm" ; - rdfs:subClassOf nmdc:OntologyClass ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Scaffold Lineage tsv" ; + rdfs:subClassOf nmdc:FileTypeEnum . + + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Structural Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . + + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Structural Annotation Stats Json" ; + rdfs:subClassOf nmdc:FileTypeEnum . + + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "TIGRFam Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . + + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "TMRNA Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . + + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "TRNA Annotation GFF" ; + rdfs:subClassOf nmdc:FileTypeEnum . + + a owl:Class, + nmdc:FileTypeEnum ; + rdfs:label "Unfiltered Metaproteomics Results" ; + rdfs:subClassOf nmdc:FileTypeEnum . + + a owl:Class, + nmdc:FilterTypeEnum ; + rdfs:label "HEPA" ; + rdfs:subClassOf nmdc:FilterTypeEnum . + + a owl:Class, + nmdc:FilterTypeEnum ; + rdfs:label "chemical air filter" ; + rdfs:subClassOf nmdc:FilterTypeEnum . + + a owl:Class, + nmdc:FilterTypeEnum ; + rdfs:label "electrostatic" ; + rdfs:subClassOf nmdc:FilterTypeEnum . + + a owl:Class, + nmdc:FilterTypeEnum ; + rdfs:label "gas-phase or ultraviolet air treatments" ; + rdfs:subClassOf nmdc:FilterTypeEnum . + + a owl:Class, + nmdc:FilterTypeEnum ; + rdfs:label "low-MERV pleated media" ; + rdfs:subClassOf nmdc:FilterTypeEnum . + + a owl:Class, + nmdc:FilterTypeEnum ; + rdfs:label "particulate air filter" ; + rdfs:subClassOf nmdc:FilterTypeEnum . nmdc:FiltrationProcess a owl:Class, linkml:ClassDefinition ; @@ -6152,7646 +4039,11042 @@ nmdc:FiltrationProcess a owl:Class, ORCID:0009-0001-1555-1601, ORCID:0009-0008-4013-7737 ; rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:volume ], - [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty nmdc:volume ], [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:instrument_used ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:volume ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:AnonymousInstrument ; - owl:onProperty nmdc:instrument_used ], - nmdc:PlannedProcess ; - skos:definition "The process of segregation of phases; e.g. the separation of suspended solids from a liquid or gas, usually by forcing a carrier gas or liquid through a porous medium." ; - skos:inScheme nmdc:nmdc ; - skos:relatedMatch . - -nmdc:IntegerValue a owl:Class, - linkml:ClassDefinition ; - rdfs:label "IntegerValue" ; - rdfs:subClassOf nmdc:AttributeValue ; - skos:definition "A value that is an integer" ; - skos:inScheme nmdc:core . - -nmdc:MetatranscriptomeAnnotationActivity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MetatranscriptomeAnnotationActivity" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], + owl:allValuesFrom linkml:Boolean ; + owl:onProperty nmdc:is_pressurized ], [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], + owl:allValuesFrom nmdc:SeparationMethodEnum ; + owl:onProperty nmdc:separation_method ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - nmdc:WorkflowExecutionActivity ; - skos:inScheme nmdc:workflow_execution_activity . - -nmdc:MetatranscriptomeAssembly a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MetatranscriptomeAssembly" ; - rdfs:subClassOf [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], + owl:onProperty nmdc:separation_method ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - nmdc:WorkflowExecutionActivity ; - skos:inScheme nmdc:workflow_execution_activity . - -nmdc:MixingProcess a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MixingProcess" ; - dcterms:contributor ORCID:0000-0002-8683-0050, - ORCID:0009-0001-1555-1601 ; - rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom nmdc:ProcessedSample ; - owl:onProperty nmdc:has_output ], + owl:onProperty nmdc:conditionings ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:has_output ], + owl:onProperty nmdc:separation_method ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:has_input ], + owl:onProperty nmdc:filtration_category ], [ a owl:Restriction ; owl:allValuesFrom nmdc:AnonymousInstrument ; owl:onProperty nmdc:instrument_used ], [ a owl:Restriction ; - owl:allValuesFrom [ owl:unionOf ( nmdc:Biosample nmdc:ProcessedSample ) ] ; - owl:onProperty nmdc:has_input ], + owl:minCardinality 0 ; + owl:onProperty nmdc:filter_material ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:volume ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty nmdc:instrument_used ], - nmdc:PlannedProcess ; - skos:definition """The combining of components, particles or layers into a more homogeneous state. -""" ; - skos:inScheme nmdc:nmdc ; - skos:note "Homogeneity may be considered to have been achieved in a practical sense when the sampling error of the processed portion is negligible compared to the total error of the measurement system.", - "The mixing may be achieved manually or mechanically by shifting the material with stirrers or pumps or by revolving or shaking the container.", - "The process must not permit segregation of particles of different size or properties." . - -nmdc:OrthologyGroup a owl:Class, - linkml:ClassDefinition ; - rdfs:label "OrthologyGroup" ; - rdfs:subClassOf nmdc:FunctionalAnnotationTerm ; - skos:definition "A set of genes or gene products in which all members are orthologous" ; - skos:editorialNote "KEGG.ORTHOLOGY prefix is used for KO numbers" ; - skos:exactMatch ; - skos:inScheme nmdc:annotation . - -nmdc:Pathway a owl:Class, - linkml:ClassDefinition ; - rdfs:label "Pathway" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:has_part ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:Reaction ; - owl:onProperty nmdc:has_part ], - nmdc:FunctionalAnnotationTerm ; - skos:altLabel "biological process", - "metabolic pathway", - "signaling pathway" ; - skos:definition "A pathway is a sequence of steps/reactions carried out by an organism or community of organisms" ; - skos:exactMatch ; - skos:inScheme nmdc:annotation . - -nmdc:ProteinQuantification a owl:Class, - linkml:ClassDefinition ; - rdfs:label "ProteinQuantification" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:best_protein ], + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:volume ], [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:best_protein ], + owl:maxCardinality 1 ; + owl:onProperty nmdc:filter_pore_size ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:best_protein ], + owl:maxCardinality 1 ; + owl:onProperty nmdc:container_size ], [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:all_proteins ], + owl:maxCardinality 1 ; + owl:onProperty nmdc:is_pressurized ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:all_proteins ] ; - skos:definition "This is used to link a metaproteomics analysis workflow to a specific protein" ; - skos:inScheme nmdc:core . - -nmdc:SubSamplingProcess a owl:Class, - linkml:ClassDefinition ; - rdfs:label "SubSamplingProcess" ; - dcterms:contributor ORCID:0000-0001-9076-6066, - ORCID:0000-0002-8683-0050, - ORCID:0009-0001-1555-1601, - ORCID:0009-0008-4013-7737 ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:has_input ], + owl:maxCardinality 1 ; + owl:onProperty nmdc:filtration_category ], [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:has_output ], + owl:maxCardinality 1 ; + owl:onProperty nmdc:filter_material ], [ a owl:Restriction ; - owl:allValuesFrom [ owl:unionOf ( nmdc:Biosample nmdc:ProcessedSample ) ] ; - owl:onProperty nmdc:has_input ], + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty nmdc:filter_pore_size ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:ProcessedSample ; - owl:onProperty nmdc:has_output ], + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:filtration_category ], [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:volume ], + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty nmdc:container_size ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:volume ], + owl:onProperty nmdc:filter_pore_size ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:mass ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:mass ], + owl:onProperty nmdc:conditionings ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:mass ], + owl:onProperty nmdc:filter_material ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:volume ], + owl:minCardinality 0 ; + owl:onProperty nmdc:container_size ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:is_pressurized ], nmdc:PlannedProcess ; - skos:definition """Separating a sample aliquot from the starting material for downstream activity. -""" ; - skos:editorialNote "A subsample may be (a) a portion of the sample obtained by selection or division; (b) an individual unit of the lot taken as part of the sample; (c) the final unit of multistage sampling. The term 'subsample' is used either in the sense of a 'sample of a sample' or as a synonym for 'unit'. In practice, the meaning is usually apparent from the context or is defined." ; + skos:definition "The process of segregation of phases; e.g. the separation of suspended solids from a liquid or gas, usually by forcing a carrier gas or liquid through a porous medium." ; skos:inScheme nmdc:nmdc ; - skos:relatedMatch OBI:0000744 . + skos:relatedMatch . -nmdc:UrlValue a owl:Class, - linkml:ClassDefinition ; - rdfs:label "UrlValue" ; - rdfs:subClassOf nmdc:AttributeValue ; - skos:definition "A value that is a string that conforms to URL syntax" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:FloorCondEnum ; + rdfs:label "damaged" ; + rdfs:subClassOf nmdc:FloorCondEnum . -nmdc:activity_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "activity_set" ; - rdfs:range nmdc:WorkflowExecutionActivity ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of workflow activities." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorCondEnum ; + rdfs:label "needs repair" ; + rdfs:subClassOf nmdc:FloorCondEnum . -nmdc:activity_speed a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "activity_speed" ; - dcterms:title "activity speed" ; - rdfs:range nmdc:QuantityValue ; - skos:altLabel "shake_speed" ; - skos:inScheme nmdc:sample_prep . + a owl:Class, + nmdc:FloorCondEnum ; + rdfs:label "new" ; + rdfs:subClassOf nmdc:FloorCondEnum . -nmdc:activity_temperature a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "activity_temperature" ; - rdfs:range nmdc:QuantityValue ; - skos:inScheme nmdc:sample_prep . + a owl:Class, + nmdc:FloorCondEnum ; + rdfs:label "rupture" ; + rdfs:subClassOf nmdc:FloorCondEnum . -nmdc:activity_time a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "activity_time" ; - dcterms:title "activity time" ; - rdfs:range nmdc:QuantityValue ; - skos:altLabel "shake_time" ; - skos:inScheme nmdc:sample_prep . + a owl:Class, + nmdc:FloorCondEnum ; + rdfs:label "visible wear" ; + rdfs:subClassOf nmdc:FloorCondEnum . -nmdc:add_date a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "add_date" ; - rdfs:range linkml:String ; - skos:definition "The date on which the information was added to the database." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "bamboo" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:alternate_emails a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "alternate_emails" ; - rdfs:range linkml:String ; - skos:definition "One or more other email addresses for an entity." ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "carpet" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:alternative_descriptions a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "alternative_descriptions" ; - rdfs:range linkml:String ; - skos:definition "A list of alternative descriptions for the entity. The distinction between description and alternative descriptions is application-specific." ; - skos:inScheme nmdc:basic_slots . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "clear finish" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:alternative_titles a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "alternative_titles" ; - rdfs:range linkml:String ; - skos:definition "A list of alternative titles for the entity. The distinction between title and alternative titles is application-specific." ; - skos:exactMatch dcterms:alternative ; - skos:inScheme nmdc:basic_slots . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "concrete" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:ammonium_nitrogen a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ammonium_nitrogen" ; - dcterms:title "ammonium nitrogen" ; - rdfs:range nmdc:QuantityValue ; - rdfs:seeAlso ; - rdfs:subPropertyOf nmdc:attribute ; - skos:altLabel "NH4-N", - "ammonium_nitrogen" ; - skos:definition "Concentration of ammonium nitrogen in the sample" ; - skos:inScheme nmdc:nmdc ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "mg/kg" . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "cork" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:analysis_type a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "analysis_type" ; - dcterms:title "analysis/data type" ; - rdfs:range nmdc:AnalysisTypeEnum ; - rdfs:seeAlso ; - skos:definition "Select all the data types associated or available for this biosample" ; - skos:inScheme ; - sh:order 3 . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "laminate wood" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:applied_roles a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "applied_roles" ; - rdfs:domain nmdc:CreditAssociation ; - rdfs:range nmdc:CreditEnum ; - skos:inScheme nmdc:nmdc ; - nmdc:display_hint "Identify all CRediT roles associated with this contributor. CRediT Information: https://info.orcid.org/credit-for-research-contribution ; CRediT: https://credit.niso.org/" . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "lineoleum" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:applies_to_person a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "applies_to_person" ; - rdfs:domain nmdc:CreditAssociation ; - rdfs:range nmdc:PersonValue ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "none" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:asm_score a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "asm_score" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "A score for comparing metagenomic assembly quality from same sample." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "none or unfinished" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:associated_dois a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "associated_dois" ; - rdfs:domain nmdc:Study ; - rdfs:range nmdc:Doi ; - skos:altLabel "Associated DOIs", - "Associated digital object identifiers" ; - skos:definition "A list of DOIs associated with a resource, such as a list of DOIS associated with a Study." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "paint" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:bin_name a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "bin_name" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "rug" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:bin_quality a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "bin_quality" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "sealed" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:binned_contig_num a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "binned_contig_num" ; - rdfs:range linkml:Integer ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "sheet vinyl" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:biogas_retention_time a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "biogas_retention_time" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "stone" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:biogas_temperature a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "biogas_temperature" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "terrazo" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:biosample_categories a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "biosample_categories" ; - dcterms:title "Categories the biosample belongs to" ; - rdfs:range nmdc:BiosampleCategoryEnum ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "tile" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:biosample_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "biosample_set" ; - rdfs:range nmdc:Biosample ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of samples within it." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "vinyl composition tile" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:bulk_elect_conductivity a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "bulk_elect_conductivity" ; - dcterms:title "bulk electrical conductivity" ; - rdfs:range nmdc:QuantityValue ; - skos:definition "Electrical conductivity is a measure of the ability to carry electric current, which is mostly dictated by the chemistry of and amount of water." ; - skos:inScheme nmdc:nmdc ; - skos:note "Provide the value output of the field instrument." . + a owl:Class, + nmdc:FloorFinishMatEnum ; + rdfs:label "wood strip or parquet" ; + rdfs:subClassOf nmdc:FloorFinishMatEnum . -nmdc:chemical a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "chemical" ; - rdfs:range nmdc:ChemicalEntity ; - skos:definition "from reaction participant class" ; - skos:inScheme nmdc:annotation . + a owl:Class, + nmdc:FloorStrucEnum ; + rdfs:label "balcony" ; + rdfs:subClassOf nmdc:FloorStrucEnum . -nmdc:chemical_formula a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "chemical_formula" ; - rdfs:range linkml:String ; - skos:definition "A generic grouping for molecular formulae and empirical formulae" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:FloorStrucEnum ; + rdfs:label "concrete" ; + rdfs:subClassOf nmdc:FloorStrucEnum . -nmdc:collected_from a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "collected_from" ; - rdfs:domain nmdc:Biosample ; - rdfs:range nmdc:FieldResearchSite ; - skos:definition "The Site from which a Biosample was collected" ; - skos:inScheme nmdc:nmdc ; - skos:note "this illustrates implementing a Biosample relation with a (binary) slot" . + a owl:Class, + nmdc:FloorStrucEnum ; + rdfs:label "floating floor" ; + rdfs:subClassOf nmdc:FloorStrucEnum . -nmdc:collecting_biosamples_from_site_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "collecting_biosamples_from_site_set" ; - rdfs:range nmdc:CollectingBiosamplesFromSite ; - rdfs:subPropertyOf nmdc:object_set ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorStrucEnum ; + rdfs:label "glass floor" ; + rdfs:subClassOf nmdc:FloorStrucEnum . -nmdc:collection_date_inc a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "collection_date_inc" ; - dcterms:title "incubation collection date" ; - rdfs:seeAlso ; - skos:definition "Date the incubation was harvested/collected/ended. Only relevant for incubation samples." ; - skos:editorialNote "MIxS collection_date accepts (truncated) ISO8601. DH taking arbitrary precision date only" ; - skos:inScheme ; - skos:note "Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable." ; - sh:order 2 . + a owl:Class, + nmdc:FloorStrucEnum ; + rdfs:label "raised floor" ; + rdfs:subClassOf nmdc:FloorStrucEnum . -nmdc:collection_time a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "collection_time" ; - dcterms:title "collection time, GMT" ; - rdfs:seeAlso ; - skos:definition "The time of sampling, either as an instance (single point) or interval." ; - skos:editorialNote "MIxS collection_date accepts (truncated) ISO8601. DH taking seconds optional time only" ; - skos:inScheme ; - skos:note "Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter" ; - sh:order 1 . + a owl:Class, + nmdc:FloorStrucEnum ; + rdfs:label "sprung floor" ; + rdfs:subClassOf nmdc:FloorStrucEnum . -nmdc:collection_time_inc a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "collection_time_inc" ; - dcterms:title "incubation collection time, GMT" ; - rdfs:seeAlso ; - skos:definition "Time the incubation was harvested/collected/ended. Only relevant for incubation samples." ; - skos:editorialNote "MIxS collection_date accepts (truncated) ISO8601. DH taking seconds optional time only" ; - skos:inScheme ; - skos:note "Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter" ; - sh:order 3 . + a owl:Class, + nmdc:FloorStrucEnum ; + rdfs:label "wood-framed" ; + rdfs:subClassOf nmdc:FloorStrucEnum . -nmdc:community a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "community" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorWaterMoldEnum ; + rdfs:label "bulging walls" ; + rdfs:subClassOf nmdc:FloorWaterMoldEnum . -nmdc:completeness a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "completeness" ; - rdfs:range linkml:Float ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:FloorWaterMoldEnum ; + rdfs:label "ceiling discoloration" ; + rdfs:subClassOf nmdc:FloorWaterMoldEnum . -nmdc:completion_date a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "completion_date" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorWaterMoldEnum ; + rdfs:label "condensation" ; + rdfs:subClassOf nmdc:FloorWaterMoldEnum . -nmdc:compression_type a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "compression_type" ; - rdfs:range linkml:String ; - skos:definition "If provided, specifies the compression type" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorWaterMoldEnum ; + rdfs:label "floor discoloration" ; + rdfs:subClassOf nmdc:FloorWaterMoldEnum . -nmdc:concentration a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "concentration" ; - rdfs:range nmdc:QuantityValue ; - skos:definition "The concentration of a substance used in an activity" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorWaterMoldEnum ; + rdfs:label "mold odor" ; + rdfs:subClassOf nmdc:FloorWaterMoldEnum . -nmdc:conditionings a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "conditionings" ; - rdfs:range linkml:String ; - skos:definition "Preliminary treatment of either phase with a suitable solution of the other phase (in the absence of main extractable solute(s)) so that when the subsequent equilibration is carried out changes in the (volume) phase ratio or in the concentrations of other components are minimized." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorWaterMoldEnum ; + rdfs:label "peeling paint or wallpaper" ; + rdfs:subClassOf nmdc:FloorWaterMoldEnum . -nmdc:contained_in a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "contained_in" ; - rdfs:range nmdc:ContainerCategoryEnum ; - skos:definition "A type of container. i.e. test tube, falcon tube, etc." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorWaterMoldEnum ; + rdfs:label "wall discoloration" ; + rdfs:subClassOf nmdc:FloorWaterMoldEnum . -nmdc:container_size a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "container_size" ; - dcterms:contributor ORCID:0000-0002-8683-0050, - ORCID:0009-0001-1555-1601 ; - rdfs:range nmdc:QuantityValue ; - skos:definition "The volume of the container an analyte is stored in or an activity takes place in" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FloorWaterMoldEnum ; + rdfs:label "water stains" ; + rdfs:subClassOf nmdc:FloorWaterMoldEnum . -nmdc:contamination a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "contamination" ; - rdfs:range linkml:Float ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:FloorWaterMoldEnum ; + rdfs:label "wet floor" ; + rdfs:subClassOf nmdc:FloorWaterMoldEnum . -nmdc:contig_bp a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "contig_bp" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Total size in bp of all contigs." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:FreqCleanEnum ; + rdfs:label "Annually" ; + rdfs:subClassOf nmdc:FreqCleanEnum . -nmdc:contigs a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "contigs" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "The sum of the (length*log(length)) of all contigs, times some constant. Increase the contiguity, the score will increase" ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:FreqCleanEnum ; + rdfs:label "Daily" ; + rdfs:subClassOf nmdc:FreqCleanEnum . -nmdc:count a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "count" ; - rdfs:range linkml:Integer ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FreqCleanEnum ; + rdfs:label "Monthly" ; + rdfs:subClassOf nmdc:FreqCleanEnum . -nmdc:ctg_l50 a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ctg_l50" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Given a set of contigs, the L50 is defined as the sequence length of the shortest contig at 50% of the total genome length." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:FreqCleanEnum ; + rdfs:label "Quarterly" ; + rdfs:subClassOf nmdc:FreqCleanEnum . -nmdc:ctg_l90 a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ctg_l90" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all contigs of that length or longer contains at least 90% of the sum of the lengths of all contigs." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:FreqCleanEnum ; + rdfs:label "Weekly" ; + rdfs:subClassOf nmdc:FreqCleanEnum . -nmdc:ctg_logsum a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ctg_logsum" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Maximum contig length." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:FreqCleanEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:FreqCleanEnum . -nmdc:ctg_max a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ctg_max" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Maximum contig length." ; - skos:inScheme nmdc:workflow_execution_activity . +nmdc:FunctionalAnnotation a owl:Class, + linkml:ClassDefinition ; + rdfs:label "FunctionalAnnotation" ; + rdfs:seeAlso , + ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_function ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:has_function ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:OntologyClass ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:was_generated_by ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MetagenomeAnnotationActivity ; + owl:onProperty nmdc:was_generated_by ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:was_generated_by ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:has_function ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:subject ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:GeneProduct ; + owl:onProperty nmdc:subject ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:subject ] ; + skos:definition "An assignment of a function term (e.g. reaction or pathway) that is executed by a gene product, or which the gene product plays an active role in. Functional annotations can be assigned manually by curators, or automatically in workflows. In the context of NMDC, all function annotation is performed automatically, typically using HMM or Blast type methods" ; + skos:editorialNote "move id slot usage patterns to has_function slot usage?" ; + skos:inScheme nmdc:annotation ; + skos:narrowMatch . -nmdc:ctg_n50 a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ctg_n50" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Given a set of contigs, each with its own length, the N50 count is defined as the smallest number_of_contigs whose length sum makes up half of genome size." ; - skos:inScheme nmdc:workflow_execution_activity . +nmdc:FunctionalAnnotationAggMember a owl:Class, + linkml:ClassDefinition ; + rdfs:label "FunctionalAnnotationAggMember" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:count ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:count ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:metagenome_annotation_id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:count ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:metagenome_annotation_id ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:WorkflowExecutionActivity ; + owl:onProperty nmdc:metagenome_annotation_id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gene_function_id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gene_function_id ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Uriorcurie ; + owl:onProperty nmdc:gene_function_id ] ; + skos:inScheme nmdc:nmdc . -nmdc:ctg_n90 a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ctg_n90" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Given a set of contigs, each with its own length, the N90 count is defined as the smallest number of contigs whose length sum makes up 90% of genome size." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:FurnitureEnum ; + rdfs:label "cabinet" ; + rdfs:subClassOf nmdc:FurnitureEnum . -nmdc:ctg_powsum a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ctg_powsum" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Powersum of all contigs is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25)." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:FurnitureEnum ; + rdfs:label "chair" ; + rdfs:subClassOf nmdc:FurnitureEnum . -nmdc:data_object_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "data_object_set" ; - rdfs:range nmdc:DataObject ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of data objects within it." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:FurnitureEnum ; + rdfs:label "desks" ; + rdfs:subClassOf nmdc:FurnitureEnum . -nmdc:data_object_type a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "data_object_type" ; - rdfs:range nmdc:FileTypeEnum ; - skos:definition "The type of file represented by the data object." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:GenderRestroomEnum ; + rdfs:label "all gender" ; + rdfs:subClassOf nmdc:GenderRestroomEnum . -nmdc:date_created a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "date_created" ; - skos:definition "from database class" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:GenderRestroomEnum ; + rdfs:label "female" ; + rdfs:subClassOf nmdc:GenderRestroomEnum . -nmdc:device_type a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "device_type" ; - dcterms:title "device type" ; - rdfs:range nmdc:DeviceTypeEnum ; - skos:altLabel "shaker type" ; - skos:inScheme nmdc:sample_prep . + a owl:Class, + nmdc:GenderRestroomEnum ; + rdfs:label "gender neurtral" ; + rdfs:subClassOf nmdc:GenderRestroomEnum . -nmdc:direction a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "direction" ; - skos:definition "One of l->r, r->l, bidirectional, neutral" ; - skos:inScheme nmdc:annotation . + a owl:Class, + nmdc:GenderRestroomEnum ; + rdfs:label "male" ; + rdfs:subClassOf nmdc:GenderRestroomEnum . -nmdc:display_order a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "display_order" ; - rdfs:subPropertyOf nmdc:attribute ; - skos:definition "When rendering information, this attribute to specify the order in which the information should be rendered." ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:GenderRestroomEnum ; + rdfs:label "male and female" ; + rdfs:subClassOf nmdc:GenderRestroomEnum . -nmdc:dissolution_reagent a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dissolution_reagent" ; - dcterms:title "dissolution reagent" ; - rdfs:range nmdc:SolventEnum ; - skos:altLabel "solvent" ; - skos:inScheme nmdc:sample_prep . + a owl:Class, + nmdc:GenderRestroomEnum ; + rdfs:label "unisex" ; + rdfs:subClassOf nmdc:GenderRestroomEnum . -nmdc:dissolution_volume a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dissolution_volume" ; - dcterms:title "dissolution volume" ; - rdfs:range nmdc:QuantityValue ; - skos:altLabel "volume" ; - skos:inScheme nmdc:sample_prep . +nmdc:GenomeFeature a owl:Class, + linkml:ClassDefinition ; + rdfs:label "GenomeFeature" ; + rdfs:seeAlso ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:phase ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:strand ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Integer [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:maxInclusive 2 ] ) ] ) ] ; + owl:onProperty nmdc:phase ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:feature_type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:end ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:phase ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:encodes ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:end ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:seqid ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:OntologyClass ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:feature_type ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:seqid ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:start ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:encodes ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:start ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:seqid ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:strand ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:start ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:GeneProduct ; + owl:onProperty nmdc:encodes ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:feature_type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:strand ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:end ] ; + skos:definition "A feature localized to an interval along a genome" ; + skos:inScheme nmdc:annotation ; + skos:note "corresponds to an entry in GFF3" . -nmdc:dissolved_in a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dissolved_in" ; - dcterms:title "dissolved in" ; - rdfs:range nmdc:MaterialContainer ; - skos:altLabel "container" ; - skos:inScheme nmdc:sample_prep . + a owl:Class, + nmdc:GrowthHabitEnum ; + rdfs:label "erect" ; + rdfs:subClassOf nmdc:GrowthHabitEnum . -nmdc:dissolving_activity_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dissolving_activity_set" ; - dcterms:title "dissolving activity set" ; - rdfs:range nmdc:DissolvingActivity ; - skos:inScheme nmdc:sample_prep . + a owl:Class, + nmdc:GrowthHabitEnum ; + rdfs:label "prostrate" ; + rdfs:subClassOf nmdc:GrowthHabitEnum . -nmdc:dna_absorb1 a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_absorb1" ; - dcterms:title "DNA absorbance 260/280" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:biomaterial_purity ; - skos:definition "260/280 measurement of DNA sample purity" ; - skos:inScheme ; - skos:note "Recommended value is between 1 and 3." ; - sh:order 7 . + a owl:Class, + nmdc:GrowthHabitEnum ; + rdfs:label "semi-erect" ; + rdfs:subClassOf nmdc:GrowthHabitEnum . -nmdc:dna_absorb2 a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_absorb2" ; - dcterms:title "DNA absorbance 260/230" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:biomaterial_purity ; - skos:definition "260/230 measurement of DNA sample purity" ; - skos:inScheme ; - skos:note "Recommended value is between 1 and 3." ; - sh:order 8 . + a owl:Class, + nmdc:GrowthHabitEnum ; + rdfs:label "spreading" ; + rdfs:subClassOf nmdc:GrowthHabitEnum . -nmdc:dna_collect_site a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_collect_site" ; - dcterms:title "DNA collection site" ; - skos:definition "Provide information on the site your DNA sample was collected from" ; - skos:inScheme ; - sh:order 15 . + a owl:Class, + nmdc:HandidnessEnum ; + rdfs:label "ambidexterity" ; + rdfs:subClassOf nmdc:HandidnessEnum . -nmdc:dna_concentration a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_concentration" ; - dcterms:title "DNA concentration in ng/ul" ; - rdfs:range [ a rdfs:Datatype ; - owl:intersectionOf ( linkml:Float [ a rdfs:Datatype ; - owl:onDatatype xsd:integer ; - owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; - owl:onDatatype xsd:integer ; - owl:withRestrictions ( [ xsd:maxInclusive 2000 ] ) ] ) ] ; - rdfs:seeAlso nmdc:nucleic_acid_concentration ; - skos:inScheme ; - skos:note "Units must be in ng/uL. Enter the numerical part only. Must be calculated using a fluorometric method. Acceptable values are 0-2000." ; - sh:order 5 . + a owl:Class, + nmdc:HandidnessEnum ; + rdfs:label "left handedness" ; + rdfs:subClassOf nmdc:HandidnessEnum . -nmdc:dna_cont_type a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_cont_type" ; - dcterms:title "DNA container type" ; - rdfs:range nmdc:JgiContTypeEnum ; - skos:definition "Tube or plate (96-well)" ; - skos:inScheme ; - sh:order 10 . + a owl:Class, + nmdc:HandidnessEnum ; + rdfs:label "mixed-handedness" ; + rdfs:subClassOf nmdc:HandidnessEnum . -nmdc:dna_cont_well a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_cont_well" ; - dcterms:title "DNA plate position" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^(?!A1|A12|H1|H12)(([A-H][1-9])|([A-H]1[0-2]))$" ] ) ] ; - skos:inScheme ; - skos:note "For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).", - "JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass validation.", - "Leave blank if the sample will be shipped in a tube.", - "Required when 'plate' is selected for container type." ; - sh:order 11 . + a owl:Class, + nmdc:HandidnessEnum ; + rdfs:label "right handedness" ; + rdfs:subClassOf nmdc:HandidnessEnum . -nmdc:dna_container_id a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_container_id" ; - dcterms:title "DNA container label" ; - skos:inScheme ; - skos:note "Must be unique across all tubes and plates, and <20 characters. All samples in a plate should have the same plate label." ; - sh:order 9 . + a owl:Class, + nmdc:HcProducedEnum ; + rdfs:label "Bitumen" ; + rdfs:subClassOf nmdc:HcProducedEnum . -nmdc:dna_dnase a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_dnase" ; - dcterms:title "DNase treatment DNA" ; - rdfs:range nmdc:YesNoEnum ; - skos:inScheme ; - skos:note "Note DNase treatment is required for all RNA samples." ; - sh:order 13 . + a owl:Class, + nmdc:HcProducedEnum ; + rdfs:label "Coalbed Methane" ; + rdfs:subClassOf nmdc:HcProducedEnum . -nmdc:dna_isolate_meth a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_isolate_meth" ; - dcterms:title "DNA isolation method" ; - skos:definition "Describe the method/protocol/kit used to extract DNA/RNA." ; - skos:inScheme ; - sh:order 16 . + a owl:Class, + nmdc:HcProducedEnum ; + rdfs:label "Gas" ; + rdfs:subClassOf nmdc:HcProducedEnum . -nmdc:dna_organisms a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_organisms" ; - dcterms:title "DNA expected organisms" ; - skos:definition "List any organisms known or suspected to grow in co-culture, as well as estimated % of the organism in that culture." ; - skos:inScheme ; - sh:order 14 . + a owl:Class, + nmdc:HcProducedEnum ; + rdfs:label "Gas-Condensate" ; + rdfs:subClassOf nmdc:HcProducedEnum . -nmdc:dna_project_contact a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_project_contact" ; - dcterms:title "DNA seq project contact" ; - skos:inScheme ; - skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; - sh:order 18 . + a owl:Class, + nmdc:HcProducedEnum ; + rdfs:label "Oil" ; + rdfs:subClassOf nmdc:HcProducedEnum . -nmdc:dna_samp_id a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_samp_id" ; - dcterms:title "DNA sample ID" ; - skos:inScheme ; - skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; - sh:order 3 . + a owl:Class, + nmdc:HcProducedEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:HcProducedEnum . -nmdc:dna_sample_format a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_sample_format" ; - dcterms:title "DNA sample format" ; - rdfs:range nmdc:DnaSampleFormatEnum ; - skos:definition "Solution in which the DNA sample has been suspended" ; - skos:inScheme ; - sh:order 12 . + a owl:Class, + nmdc:HcrEnum ; + rdfs:label "Coalbed" ; + rdfs:subClassOf nmdc:HcrEnum . -nmdc:dna_sample_name a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_sample_name" ; - dcterms:title "DNA sample name" ; - skos:definition "Give the DNA sample a name that is meaningful to you. Sample names must be unique across all JGI projects and contain a-z, A-Z, 0-9, - and _ only." ; - skos:inScheme ; - sh:order 4 . + a owl:Class, + nmdc:HcrEnum ; + rdfs:label "Gas Reservoir" ; + rdfs:subClassOf nmdc:HcrEnum . -nmdc:dna_seq_project a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_seq_project" ; - dcterms:title "DNA seq project ID" ; - skos:inScheme ; - skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; - sh:order 1 . + a owl:Class, + nmdc:HcrEnum ; + rdfs:label "Oil Reservoir" ; + rdfs:subClassOf nmdc:HcrEnum . -nmdc:dna_seq_project_name a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_seq_project_name" ; - dcterms:title "DNA seq project name" ; - skos:inScheme ; - skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; - sh:order 2 . + a owl:Class, + nmdc:HcrEnum ; + rdfs:label "Oil Sand" ; + rdfs:subClassOf nmdc:HcrEnum . -nmdc:dna_seq_project_pi a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_seq_project_pi" ; - dcterms:title "DNA seq project PI" ; - skos:inScheme ; - skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; - sh:order 17 . + a owl:Class, + nmdc:HcrEnum ; + rdfs:label "Shale" ; + rdfs:subClassOf nmdc:HcrEnum . -nmdc:dna_volume a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dna_volume" ; - dcterms:title "DNA volume in ul" ; - rdfs:range [ a rdfs:Datatype ; - owl:intersectionOf ( linkml:Float [ a rdfs:Datatype ; - owl:onDatatype xsd:integer ; - owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; - owl:onDatatype xsd:integer ; - owl:withRestrictions ( [ xsd:maxInclusive 1000 ] ) ] ) ] ; - skos:inScheme ; - skos:note "Units must be in uL. Enter the numerical part only. Value must be 0-1000. This form accepts values < 25, but JGI may refuse to process them unless permission has been granted by a project manager" ; - sh:order 6 . + a owl:Class, + nmdc:HcrEnum ; + rdfs:label "Tight Gas Reservoir" ; + rdfs:subClassOf nmdc:HcrEnum . -nmdc:dnase_rna a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "dnase_rna" ; - dcterms:title "DNase treated" ; - rdfs:range nmdc:YesNoEnum ; - skos:inScheme ; - skos:note "Note DNase treatment is required for all RNA samples." ; - sh:order 13 . + a owl:Class, + nmdc:HcrEnum ; + rdfs:label "Tight Oil Reservoir" ; + rdfs:subClassOf nmdc:HcrEnum . -nmdc:doi_category a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "doi_category" ; - rdfs:domain nmdc:Doi ; - rdfs:range nmdc:DoiCategoryEnum ; - skos:definition "The resource type the corresponding doi resolves to." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:HcrEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:HcrEnum . -nmdc:doi_provider a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "doi_provider" ; - rdfs:domain nmdc:Doi ; - rdfs:range nmdc:DoiProviderEnum ; - skos:closeMatch NCIT:C74932 ; - skos:definition "The authority, or organization, the DOI is associated with." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Archean" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:doi_value a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "doi_value" ; - rdfs:domain nmdc:Doi ; - rdfs:range [ a rdfs:Datatype ; - owl:intersectionOf ( linkml:Uriorcurie [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^doi:10.\\d{2,9}/.*$" ] ) ] ) ] ; - skos:altLabel "DOI", - "digital object identifier" ; - skos:definition "A digital object identifier, which is intended to persistantly identify some resource on the web." ; - skos:exactMatch OBI:0002110 ; - skos:inScheme nmdc:nmdc ; - skos:narrowMatch edam.data:1188 . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Cambrian" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:duration a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "duration" ; - rdfs:range nmdc:QuantityValue ; - skos:definition "The elapsed time of an activity." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Carboniferous" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:ecosystem a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ecosystem" ; - rdfs:seeAlso ; - rdfs:subPropertyOf nmdc:gold_path_field ; - skos:definition "An ecosystem is a combination of a physical environment (abiotic factors) and all the organisms (biotic factors) that interact with this environment. Ecosystem is in position 1/5 in a GOLD path." ; - skos:inScheme nmdc:nmdc ; - skos:note "The abiotic factors play a profound role on the type and composition of organisms in a given environment. The GOLD Ecosystem at the top of the five-level classification system is aimed at capturing the broader environment from which an organism or environmental sample is collected. The three broad groups under Ecosystem are Environmental, Host-associated, and Engineered. They represent samples collected from a natural environment or from another organism or from engineered environments like bioreactors respectively." . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Cenozoic" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:ecosystem_category a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ecosystem_category" ; - rdfs:seeAlso ; - rdfs:subPropertyOf nmdc:gold_path_field ; - skos:definition "Ecosystem categories represent divisions within the ecosystem based on specific characteristics of the environment from where an organism or sample is isolated. Ecosystem category is in position 2/5 in a GOLD path." ; - skos:inScheme nmdc:nmdc ; - skos:note "The Environmental ecosystem (for example) is divided into Air, Aquatic and Terrestrial. Ecosystem categories for Host-associated samples can be individual hosts or phyla and for engineered samples it may be manipulated environments like bioreactors, solid waste etc." . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Cretaceous" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:ecosystem_path_id a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ecosystem_path_id" ; - rdfs:range linkml:String ; - skos:definition "A unique id representing the GOLD classifiers associated with a sample." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Devonian" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:ecosystem_subtype a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ecosystem_subtype" ; - rdfs:seeAlso ; - rdfs:subPropertyOf nmdc:gold_path_field ; - skos:definition "Ecosystem subtypes represent further subdivision of Ecosystem types into more distinct subtypes. Ecosystem subtype is in position 4/5 in a GOLD path." ; - skos:inScheme nmdc:nmdc ; - skos:note "Ecosystem Type Marine (Environmental -> Aquatic -> Marine) is further divided (for example) into Intertidal zone, Coastal, Pelagic, Intertidal zone etc. in the Ecosystem subtype category." . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Jurassic" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:ecosystem_type a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ecosystem_type" ; - rdfs:seeAlso ; - rdfs:subPropertyOf nmdc:gold_path_field ; - skos:definition "Ecosystem types represent things having common characteristics within the Ecosystem Category. These common characteristics based grouping is still broad but specific to the characteristics of a given environment. Ecosystem type is in position 3/5 in a GOLD path." ; - skos:inScheme nmdc:nmdc ; - skos:note "The Aquatic ecosystem category (for example) may have ecosystem types like Marine or Thermal springs etc. Ecosystem category Air may have Indoor air or Outdoor air as different Ecosystem Types. In the case of Host-associated samples, ecosystem type can represent Respiratory system, Digestive system, Roots etc." . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Mesozoic" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:embargoed a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "embargoed" ; - rdfs:range linkml:Boolean ; - skos:definition "If true, the data are embargoed and not available for public access." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Neogene" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:emsl_biosample_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "emsl_biosample_identifiers" ; - dcterms:title "EMSL Biosample Identifiers" ; - rdfs:subPropertyOf nmdc:biosample_identifiers, - nmdc:emsl_identifiers ; - skos:definition "A list of identifiers for the biosample from the EMSL database. This is used to link the biosample, as modeled by NMDC, to the biosample in the planned EMSL NEXUS database." ; - skos:inScheme nmdc:external_identifiers . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Ordovician" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:emsl_project_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "emsl_project_identifiers" ; - dcterms:title "EMSL Project Identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^emsl\\.project:[0-9]{5}$" ] ) ] ; - rdfs:seeAlso ; - rdfs:subPropertyOf nmdc:emsl_identifiers, - nmdc:study_identifiers ; - skos:definition "an identifier that links to an EMSL user facility project" ; - skos:editorialNote "these identifiers are all currently 5 digits long but that could change in the future" ; - skos:inScheme nmdc:external_identifiers . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Paleogene" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:emsl_store_temp a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "emsl_store_temp" ; - dcterms:title "EMSL sample storage temperature, deg. C" ; - skos:definition "The temperature at which the sample should be stored upon delivery to EMSL" ; - skos:inScheme ; - skos:note "Enter a temperature in celsius. Numeric portion only." ; - sh:order 4 . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Paleozoic" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:encodes a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "encodes" ; - rdfs:range nmdc:GeneProduct ; - skos:definition "The gene product encoded by this feature. Typically this is used for a CDS feature or gene feature which will encode a protein. It can also be used by a nc transcript ot gene feature that encoded a ncRNA" ; - skos:inScheme nmdc:annotation . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Permian" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:end_date a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "end_date" ; - rdfs:range linkml:String ; - skos:definition "The date on which any process or activity was ended" ; - skos:inScheme nmdc:basic_slots ; - skos:note "The date should be formatted as YYYY-MM-DD", - "We are using string representations of dates until all components of our ecosystem can handle ISO 8610 dates" . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Precambrian" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:env_package a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "env_package" ; - rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf nmdc:attribute ; - skos:altLabel "environmental package" ; - skos:definition "MIxS extension for reporting of measurements and observations obtained from one or more of the environments where the sample was obtained. All environmental packages listed here are further defined in separate subtables. By giving the name of the environmental package, a selection of fields can be made from the subtables and can be reported" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Proterozoic" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:etl_software_version a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "etl_software_version" ; - skos:definition "from database class" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Silurian" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:experimental_factor_other a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "experimental_factor_other" ; - dcterms:title "experimental factor- other" ; - rdfs:seeAlso , - ; - skos:definition "Other details about your sample that you feel can't be accurately represented in the available columns." ; - skos:inScheme ; - skos:note "Provided pairs will be considered for inclusion as future slots/terms in this data collection template.", - "This slot accepts open-ended text about your sample.", - "We recommend using key:value pairs." ; - sh:order 7 . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "Triassic" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:extraction_method a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "extraction_method" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:HcrGeolAgeEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:HcrGeolAgeEnum . -nmdc:extraction_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "extraction_set" ; - rdfs:range nmdc:Extraction ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of extractions within it." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:HeatCoolTypeEnum ; + rdfs:label "forced air system" ; + rdfs:subClassOf nmdc:HeatCoolTypeEnum . -nmdc:extraction_target a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "extraction_target" ; - rdfs:range nmdc:ExtractionTargetEnum ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:HeatCoolTypeEnum ; + rdfs:label "heat pump" ; + rdfs:subClassOf nmdc:HeatCoolTypeEnum . -nmdc:feature_type a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "feature_type" ; - skos:definition "TODO: Yuri to write" ; - skos:inScheme nmdc:annotation . + a owl:Class, + nmdc:HeatCoolTypeEnum ; + rdfs:label "radiant system" ; + rdfs:subClassOf nmdc:HeatCoolTypeEnum . -nmdc:field_research_site_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "field_research_site_set" ; - rdfs:range nmdc:FieldResearchSite ; - rdfs:subPropertyOf nmdc:object_set ; - skos:inScheme nmdc:nmdc . - -nmdc:file_size_bytes a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "file_size_bytes" ; - rdfs:range nmdc:bytes ; - rdfs:subPropertyOf nmdc:attribute ; - skos:definition "Size of the file in bytes" ; - skos:inScheme nmdc:core . - -nmdc:filter_material a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "filter_material" ; - rdfs:range linkml:String ; - skos:definition "A porous material on which solid particles present in air or other fluid which flows through it are largely caught and retained." ; - skos:inScheme nmdc:nmdc ; - skos:note "Filters are made with a variety of materials: cellulose and derivatives, glass fibre, ceramic, synthetic plastics and fibres. Filters may be naturally porous or be made so by mechanical or other means. Membrane/ceramic filters are prepared with highly controlled pore size in a sheet of suitable material such as polyfluoroethylene, polycarbonate or cellulose esters. Nylon mesh is sometimes used for reinforcement. The pores constitute 80–85% of the filter volume commonly and several pore sizes are available for air sampling (0.45−0.8 μm are commonly employed)." . + a owl:Class, + nmdc:HeatCoolTypeEnum ; + rdfs:label "steam forced heat" ; + rdfs:subClassOf nmdc:HeatCoolTypeEnum . -nmdc:filter_method a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "filter_method" ; - dcterms:title "filter method" ; - rdfs:seeAlso ; - skos:definition "Type of filter used or how the sample was filtered" ; - skos:inScheme ; - skos:note "describe the filter or provide a catalog number and manufacturer" ; - sh:order 6 . + a owl:Class, + nmdc:HeatCoolTypeEnum ; + rdfs:label "wood stove" ; + rdfs:subClassOf nmdc:HeatCoolTypeEnum . -nmdc:filter_pore_size a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "filter_pore_size" ; - rdfs:range nmdc:QuantityValue ; - skos:definition "A quantitative or qualitative measurement of the physical dimensions of the pores in a material." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:HeatDelivLocEnum ; + rdfs:label "east" ; + rdfs:subClassOf nmdc:HeatDelivLocEnum . -nmdc:filtration_category a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "filtration_category" ; - rdfs:range linkml:String ; - skos:definition "The type of conditioning applied to a filter, device, etc." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:HeatDelivLocEnum ; + rdfs:label "north" ; + rdfs:subClassOf nmdc:HeatDelivLocEnum . -nmdc:functional_annotation_agg a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "functional_annotation_agg" ; - rdfs:range nmdc:FunctionalAnnotationAggMember ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:HeatDelivLocEnum ; + rdfs:label "south" ; + rdfs:subClassOf nmdc:HeatDelivLocEnum . -nmdc:functional_annotation_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "functional_annotation_set" ; - rdfs:range nmdc:FunctionalAnnotation ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of all functional annotations" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:HeatDelivLocEnum ; + rdfs:label "west" ; + rdfs:subClassOf nmdc:HeatDelivLocEnum . -nmdc:funding_sources a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "funding_sources" ; - rdfs:range linkml:String ; - skos:closeMatch NCIT:C39409 ; - skos:definition "A list of organizations, along with the award numbers, that underwrite financial support for projects of a particular type. Typically, they process applications and award funds to the chosen qualified applicants." ; - skos:inScheme nmdc:nmdc ; - skos:note "Include only the name of the funding organization and the award or contract number." . + a owl:Class, + nmdc:HostSexEnum ; + rdfs:label "female" ; + rdfs:subClassOf nmdc:HostSexEnum . -nmdc:gap_pct a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gap_pct" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "The gap size percentage of all scaffolds." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:HostSexEnum ; + rdfs:label "hermaphrodite" ; + rdfs:subClassOf nmdc:HostSexEnum . -nmdc:gc_avg a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gc_avg" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Average of GC content of all contigs." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:HostSexEnum ; + rdfs:label "male" ; + rdfs:subClassOf nmdc:HostSexEnum . -nmdc:gc_std a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gc_std" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Standard deviation of GC content of all contigs." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:HostSexEnum ; + rdfs:label "neuter" ; + rdfs:subClassOf nmdc:HostSexEnum . -nmdc:gene_count a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gene_count" ; - rdfs:range linkml:Integer ; +nmdc:ImageValue a owl:Class, + linkml:ClassDefinition ; + rdfs:label "ImageValue" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:display_order ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:description ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:url ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:url ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:description ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:display_order ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:url ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:display_order ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:description ], + nmdc:AttributeValue ; + skos:definition "An attribute value representing an image." ; skos:inScheme nmdc:core . -nmdc:gene_function_id a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gene_function_id" ; - rdfs:range linkml:Uriorcurie ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:IndoorSpaceEnum ; + rdfs:label "bathroom" ; + rdfs:subClassOf nmdc:IndoorSpaceEnum . -nmdc:genome_feature_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "genome_feature_set" ; - rdfs:range nmdc:GenomeFeature ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of all features" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:IndoorSpaceEnum ; + rdfs:label "bedroom" ; + rdfs:subClassOf nmdc:IndoorSpaceEnum . -nmdc:gnps_task_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gnps_task_identifiers" ; - dcterms:title "GNPS task identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^gnps\\.task:[a-f0-9]+$" ] ) ] ; - rdfs:seeAlso ; - rdfs:subPropertyOf nmdc:gnps_identifiers, - nmdc:study_identifiers ; - skos:definition "identifiers that link a NMDC study to a web-based report about metabolomics analysis progress and results" ; - skos:inScheme nmdc:external_identifiers ; - skos:note "this could be considered a related identifier, as the metabolomics progress and results aren't a study per se", - "this identifier was registered with bioregistry but not identifiers.org" . + a owl:Class, + nmdc:IndoorSpaceEnum ; + rdfs:label "elevator" ; + rdfs:subClassOf nmdc:IndoorSpaceEnum . -nmdc:gold_analysis_project_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gold_analysis_project_identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^gold:Ga[0-9]+$" ] ) ] ; - rdfs:subPropertyOf nmdc:analysis_identifiers, - nmdc:gold_identifiers ; - skos:definition "identifiers for corresponding analysis project in GOLD" ; - skos:inScheme nmdc:external_identifiers . + a owl:Class, + nmdc:IndoorSpaceEnum ; + rdfs:label "foyer" ; + rdfs:subClassOf nmdc:IndoorSpaceEnum . -nmdc:gold_sequencing_project_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gold_sequencing_project_identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^gold:Gp[0-9]+$" ] ) ] ; - rdfs:subPropertyOf nmdc:gold_identifiers, - nmdc:omics_processing_identifiers ; - skos:definition "identifiers for corresponding sequencing project in GOLD" ; - skos:inScheme nmdc:external_identifiers . + a owl:Class, + nmdc:IndoorSpaceEnum ; + rdfs:label "hallway" ; + rdfs:subClassOf nmdc:IndoorSpaceEnum . -nmdc:gold_study_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gold_study_identifiers" ; - dcterms:title "GOLD Study Identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^gold:Gs[0-9]+$" ] ) ] ; - rdfs:seeAlso ; - rdfs:subPropertyOf nmdc:gold_identifiers, - nmdc:study_identifiers ; - skos:definition "identifiers for corresponding project(s) in GOLD" ; - skos:inScheme nmdc:external_identifiers ; - skos:note "uses the prefix GS (but possibly in a different case)" . + a owl:Class, + nmdc:IndoorSpaceEnum ; + rdfs:label "kitchen" ; + rdfs:subClassOf nmdc:IndoorSpaceEnum . -nmdc:gtdbtk_class a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gtdbtk_class" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:IndoorSpaceEnum ; + rdfs:label "locker room" ; + rdfs:subClassOf nmdc:IndoorSpaceEnum . -nmdc:gtdbtk_domain a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gtdbtk_domain" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:IndoorSpaceEnum ; + rdfs:label "office" ; + rdfs:subClassOf nmdc:IndoorSpaceEnum . -nmdc:gtdbtk_family a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gtdbtk_family" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:IndoorSurfEnum ; + rdfs:label "cabinet" ; + rdfs:subClassOf nmdc:IndoorSurfEnum . -nmdc:gtdbtk_genus a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gtdbtk_genus" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:IndoorSurfEnum ; + rdfs:label "ceiling" ; + rdfs:subClassOf nmdc:IndoorSurfEnum . -nmdc:gtdbtk_order a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gtdbtk_order" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:IndoorSurfEnum ; + rdfs:label "counter top" ; + rdfs:subClassOf nmdc:IndoorSurfEnum . -nmdc:gtdbtk_phylum a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gtdbtk_phylum" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:IndoorSurfEnum ; + rdfs:label "door" ; + rdfs:subClassOf nmdc:IndoorSurfEnum . -nmdc:gtdbtk_species a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gtdbtk_species" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:IndoorSurfEnum ; + rdfs:label "shelving" ; + rdfs:subClassOf nmdc:IndoorSurfEnum . -nmdc:habitat a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "habitat" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:IndoorSurfEnum ; + rdfs:label "vent cover" ; + rdfs:subClassOf nmdc:IndoorSurfEnum . -nmdc:has_boolean_value a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "has_boolean_value" ; - rdfs:range linkml:Boolean ; - skos:definition "Links a quantity value to a boolean" ; + a owl:Class, + nmdc:IndoorSurfEnum ; + rdfs:label "wall" ; + rdfs:subClassOf nmdc:IndoorSurfEnum . + + a owl:Class, + nmdc:IndoorSurfEnum ; + rdfs:label "window" ; + rdfs:subClassOf nmdc:IndoorSurfEnum . + +nmdc:InstrumentMixin a owl:Class, + linkml:ClassDefinition ; + rdfs:label "InstrumentMixin" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:vendor ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:model ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:InstrumentVendorEnum ; + owl:onProperty nmdc:vendor ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:vendor ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:DeviceEnum ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:model ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:InstrumentModelEnum ; + owl:onProperty nmdc:model ] ; + skos:altLabel "device" ; + skos:exactMatch OBI:0000485 ; skos:inScheme nmdc:core . -nmdc:has_calibration a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "has_calibration" ; - rdfs:range linkml:String ; - skos:definition "A reference to a file that holds calibration information." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:InstrumentModelEnum ; + rdfs:label "Orbitrap" ; + rdfs:subClassOf nmdc:InstrumentModelEnum . -nmdc:has_credit_associations a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "has_credit_associations" ; - rdfs:domain nmdc:Study ; - rdfs:range nmdc:CreditAssociation ; - skos:definition "This slot links a study to a credit association. The credit association will be linked to a person value and to a CRediT Contributor Roles term. Overall semantics: person should get credit X for their participation in the study" ; - skos:editorialNote "had just been \"inlined: true\"" ; - skos:inScheme nmdc:nmdc ; - nmdc:display_hint "Other researchers associated with this study." . + a owl:Class, + nmdc:InstrumentModelEnum ; + rdfs:label "PIPETMAN F144059M" ; + rdfs:subClassOf nmdc:InstrumentModelEnum . -nmdc:has_maximum_numeric_value a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "has_maximum_numeric_value" ; - rdfs:subPropertyOf nmdc:has_numeric_value ; - skos:definition "The maximum value part, expressed as number, of the quantity value when the value covers a range." ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:InstrumentModelEnum ; + rdfs:label "VortexGenie2" ; + rdfs:subClassOf nmdc:InstrumentModelEnum . -nmdc:has_metabolite_quantifications a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "has_metabolite_quantifications" ; - rdfs:range nmdc:MetaboliteQuantification ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:InstrumentVendorEnum ; + rdfs:label "Gilson" ; + rdfs:subClassOf nmdc:InstrumentVendorEnum . -nmdc:has_minimum_numeric_value a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "has_minimum_numeric_value" ; - rdfs:subPropertyOf nmdc:has_numeric_value ; - skos:definition "The minimum value part, expressed as number, of the quantity value when the value covers a range." ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:InstrumentVendorEnum ; + rdfs:label "PerkinElmer" ; + rdfs:subClassOf nmdc:InstrumentVendorEnum . -nmdc:has_peptide_quantifications a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "has_peptide_quantifications" ; - rdfs:range nmdc:PeptideQuantification ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:InstrumentVendorEnum ; + rdfs:label "ScientificIndustries" ; + rdfs:subClassOf nmdc:InstrumentVendorEnum . -nmdc:highest_similarity_score a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "highest_similarity_score" ; - rdfs:range linkml:Float ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:InstrumentVendorEnum ; + rdfs:label "ThermoFisher" ; + rdfs:subClassOf nmdc:InstrumentVendorEnum . -nmdc:host_name a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "host_name" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:InstrumentVendorEnum ; + rdfs:label "VWR" ; + rdfs:subClassOf nmdc:InstrumentVendorEnum . -nmdc:igsn_biosample_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "igsn_biosample_identifiers" ; - dcterms:title "IGSN Biosample Identifiers" ; - rdfs:subPropertyOf nmdc:biosample_identifiers, - nmdc:igsn_identifiers ; - skos:definition "A list of identifiers for the biosample from the IGSN database." ; - skos:inScheme nmdc:external_identifiers . + a owl:Class, + nmdc:IntWallCondEnum ; + rdfs:label "damaged" ; + rdfs:subClassOf nmdc:IntWallCondEnum . -nmdc:img_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "img_identifiers" ; - dcterms:title "IMG Identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^img\\.taxon:[a-zA-Z0-9_][a-zA-Z0-9_\\/\\.]*$" ] ) ] ; - rdfs:subPropertyOf nmdc:external_database_identifiers ; - skos:definition "A list of identifiers that relate the biosample to records in the IMG database." ; - skos:inScheme nmdc:external_identifiers . + a owl:Class, + nmdc:IntWallCondEnum ; + rdfs:label "needs repair" ; + rdfs:subClassOf nmdc:IntWallCondEnum . -nmdc:inchi a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "inchi" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:IntWallCondEnum ; + rdfs:label "new" ; + rdfs:subClassOf nmdc:IntWallCondEnum . -nmdc:inchi_key a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "inchi_key" ; - rdfs:range linkml:String ; - skos:editorialNote "key set to false due to rare collisions: Pletnev I, Erin A, McNaught A, Blinov K, Tchekhovskoi D, Heller S (2012) InChIKey collision resistance: an experimental testing. J Cheminform. 4:12" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:IntWallCondEnum ; + rdfs:label "rupture" ; + rdfs:subClassOf nmdc:IntWallCondEnum . -nmdc:input_base_count a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "input_base_count" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:read_qc_analysis_statistic ; - skos:definition "The nucleotide base count number of input reads for QC analysis." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:IntWallCondEnum ; + rdfs:label "visible wear" ; + rdfs:subClassOf nmdc:IntWallCondEnum . -nmdc:input_contig_num a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "input_contig_num" ; - rdfs:range linkml:Integer ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:JgiContTypeEnum ; + rdfs:label "plate" ; + rdfs:subClassOf nmdc:JgiContTypeEnum . -nmdc:input_mass a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "input_mass" ; - dcterms:title "sample mass used" ; - rdfs:range nmdc:QuantityValue ; - skos:altLabel "sample mass", - "sample weight" ; - skos:definition "Total mass of sample used in activity." ; - skos:exactMatch MS:1000004 ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:JgiContTypeEnum ; + rdfs:label "tube" ; + rdfs:subClassOf nmdc:JgiContTypeEnum . -nmdc:input_read_bases a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "input_read_bases" ; - rdfs:range linkml:Float ; - skos:definition "TODO " ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:LibraryTypeEnum ; + rdfs:label "DNA" ; + rdfs:subClassOf nmdc:LibraryTypeEnum . -nmdc:input_read_count a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "input_read_count" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:read_qc_analysis_statistic ; - skos:definition "The sequence count number of input reads for QC analysis." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:LibraryTypeEnum ; + rdfs:label "RNA" ; + rdfs:subClassOf nmdc:LibraryTypeEnum . -nmdc:insdc_analysis_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "insdc_analysis_identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^insdc.sra:(E|D|S)RR[0-9]{6,}$" ] ) ] ; - rdfs:subPropertyOf nmdc:analysis_identifiers, - nmdc:insdc_identifiers ; - skos:inScheme nmdc:external_identifiers ; - skos:note "in INSDC this is a run but it corresponds to a GOLD analysis" . + a owl:Class, + nmdc:LightTypeEnum ; + rdfs:label "desk lamp" ; + rdfs:subClassOf nmdc:LightTypeEnum . -nmdc:insdc_assembly_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "insdc_assembly_identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^insdc.sra:[A-Z]+[0-9]+(\\.[0-9]+)?$" ] ) ] ; - rdfs:subPropertyOf nmdc:assembly_identifiers, - nmdc:insdc_identifiers ; - skos:inScheme nmdc:external_identifiers . + a owl:Class, + nmdc:LightTypeEnum ; + rdfs:label "electric light" ; + rdfs:subClassOf nmdc:LightTypeEnum . -nmdc:insdc_biosample_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "insdc_biosample_identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^biosample:SAM[NED]([A-Z])?[0-9]+$" ] ) ] ; - rdfs:seeAlso , - , - , - ; - rdfs:subPropertyOf nmdc:biosample_identifiers, - nmdc:insdc_identifiers ; - skos:altLabel "DDBJ biosample identifiers", - "EBI biosample identifiers", - "NCBI biosample identifiers" ; - skos:definition "identifiers for corresponding sample in INSDC" ; - skos:inScheme nmdc:external_identifiers . + a owl:Class, + nmdc:LightTypeEnum ; + rdfs:label "flourescent lights" ; + rdfs:subClassOf nmdc:LightTypeEnum . -nmdc:insdc_experiment_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "insdc_experiment_identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^insdc.sra:(E|D|S)RX[0-9]{6,}$" ] ) ] ; - rdfs:subPropertyOf nmdc:external_database_identifiers, - nmdc:insdc_identifiers ; - skos:inScheme nmdc:external_identifiers . + a owl:Class, + nmdc:LightTypeEnum ; + rdfs:label "natural light" ; + rdfs:subClassOf nmdc:LightTypeEnum . -nmdc:insdc_secondary_sample_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "insdc_secondary_sample_identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^biosample:(E|D|S)RS[0-9]{6,}$" ] ) ] ; - rdfs:subPropertyOf nmdc:biosample_identifiers, - nmdc:insdc_identifiers ; - skos:definition "secondary identifiers for corresponding sample in INSDC" ; - skos:inScheme nmdc:external_identifiers ; - skos:note "ENA redirects these to primary IDs, e.g. https://www.ebi.ac.uk/ena/browser/view/DRS166340 -> SAMD00212331", - "MGnify uses these as their primary sample IDs" . + a owl:Class, + nmdc:LightTypeEnum ; + rdfs:label "none" ; + rdfs:subClassOf nmdc:LightTypeEnum . -nmdc:insdc_sra_ena_study_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "insdc_sra_ena_study_identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^insdc.sra:(E|D|S)RP[0-9]{6,}$" ] ) ] ; - rdfs:seeAlso , - ; - rdfs:subPropertyOf nmdc:insdc_identifiers, - nmdc:study_identifiers ; - skos:altLabel "DDBJ SRA identifiers", - "EBI ENA study identifiers", - "NCBI SRA identifiers" ; - skos:definition "identifiers for corresponding project in INSDC SRA / ENA" ; - skos:inScheme nmdc:external_identifiers . - -nmdc:instrument_name a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "instrument_name" ; - skos:definition "The name of the instrument that was used for processing the sample." ; - skos:inScheme nmdc:basic_slots . - -nmdc:is_balanced a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "is_balanced" ; - rdfs:range linkml:Boolean ; - skos:inScheme nmdc:annotation . - -nmdc:is_diastereoselective a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "is_diastereoselective" ; - rdfs:range linkml:Boolean ; - skos:inScheme nmdc:annotation . - -nmdc:is_fully_characterized a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "is_fully_characterized" ; - rdfs:range linkml:Boolean ; - skos:definition "False if includes R-groups" ; - skos:inScheme nmdc:annotation . - -nmdc:is_pressurized a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "is_pressurized" ; - rdfs:range linkml:Boolean ; - skos:definition "Whether or not pressure was applied to a thing or process." ; - skos:inScheme nmdc:nmdc . - -nmdc:is_stereo a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "is_stereo" ; - rdfs:range linkml:Boolean ; - skos:inScheme nmdc:annotation . - -nmdc:is_transport a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "is_transport" ; - rdfs:range linkml:Boolean ; - skos:inScheme nmdc:annotation . - -nmdc:isotope_exposure a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "isotope_exposure" ; - dcterms:title "isotope exposure/addition" ; - rdfs:seeAlso ; - skos:definition "List isotope exposure or addition applied to your sample." ; - skos:inScheme ; - skos:note "This is required when your experimental design includes the use of isotopically labeled compounds" ; - sh:order 16 . - -nmdc:jgi_portal_study_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "jgi_portal_study_identifiers" ; - dcterms:title "JGI Portal Study identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^jgi.proposal:\\d+$" ] ) ] ; - rdfs:subPropertyOf nmdc:jgi_portal_identifiers, - nmdc:study_identifiers ; - skos:definition "Identifiers that link a NMDC study to a website hosting raw and analyzed data for a JGI proposal. The suffix of the curie can used to query the GOLD API and is interoperable with an award DOI from OSTI and a GOLD study identifier." ; - skos:inScheme nmdc:external_identifiers ; - skos:note "Could this could be considered a related identifier?", - "Curie suffix is the Site Award Number from an OSTI award page", - "Site Award Number 507130 == award doi doi:10.46936/10.25585/60000017 -- GOLD study identifier gold:Gs0154044", - "bioregistry.io/jgi.proposal:507130 ==https://genome.jgi.doe.gov/portal/BioDefcarcycling/BioDefcarcycling.info.html" . - -nmdc:keywords a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "keywords" ; - rdfs:range linkml:String ; - skos:definition "A list of keywords that used to associate the entity. Keywords SHOULD come from controlled vocabularies, including MESH, ENVO." ; - skos:inScheme nmdc:core ; - skos:mappingRelation dcterms:subject . - -nmdc:language a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "language" ; - rdfs:range nmdc:language_code ; - skos:definition "Should use ISO 639-1 code e.g. \"en\", \"fr\"" ; - skos:inScheme nmdc:core . - -nmdc:lbc_thirty a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "lbc_thirty" ; - dcterms:title "lime buffer capacity (at 30 minutes)" ; - rdfs:range nmdc:QuantityValue ; - rdfs:seeAlso , - ; - rdfs:subPropertyOf nmdc:attribute ; - skos:altLabel "lbc30", - "lbc_thirty", - "lime buffer capacity (at 30 minutes)" ; - skos:definition "lime buffer capacity, determined after 30 minute incubation" ; - skos:inScheme nmdc:nmdc ; - skos:note "This is the mass of lime, in mg, needed to raise the pH of one kg of soil by one pH unit" ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "ppm CaCO3/pH" . - -nmdc:lbceq a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "lbceq" ; - dcterms:title "lime buffer capacity (after 5 day incubation)" ; - rdfs:range nmdc:QuantityValue ; - rdfs:seeAlso ; - rdfs:subPropertyOf nmdc:attribute ; - skos:altLabel "lbceq", - "lime buffer capacity (at 5-day equilibrium)" ; - skos:definition "lime buffer capacity, determined at equilibrium after 5 day incubation" ; - skos:inScheme nmdc:nmdc ; - skos:note "This is the mass of lime, in mg, needed to raise the pH of one kg of soil by one pH unit" ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "ppm CaCO3/pH" . - -nmdc:left_participants a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "left_participants" ; - rdfs:range nmdc:ReactionParticipant ; - rdfs:subPropertyOf nmdc:has_participants ; - skos:inScheme nmdc:annotation . - -nmdc:library_preparation_kit a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "library_preparation_kit" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:nmdc . - -nmdc:library_preparation_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "library_preparation_set" ; - rdfs:range nmdc:LibraryPreparation ; - rdfs:subPropertyOf nmdc:object_set ; - skos:altLabel "library_construction_set" ; - skos:definition "This property links a database object to the set of DNA extractions within it." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:LithologyEnum ; + rdfs:label "Basement" ; + rdfs:subClassOf nmdc:LithologyEnum . -nmdc:library_type a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "library_type" ; - dcterms:title "library type" ; - rdfs:range nmdc:LibraryTypeEnum ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:LithologyEnum ; + rdfs:label "Chalk" ; + rdfs:subClassOf nmdc:LithologyEnum . -nmdc:location a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "location" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:LithologyEnum ; + rdfs:label "Chert" ; + rdfs:subClassOf nmdc:LithologyEnum . -nmdc:low_depth_contig_num a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "low_depth_contig_num" ; - rdfs:range linkml:Integer ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:LithologyEnum ; + rdfs:label "Coal" ; + rdfs:subClassOf nmdc:LithologyEnum . -nmdc:mags_activity_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "mags_activity_set" ; - rdfs:range nmdc:MagsAnalysisActivity ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of MAGs analysis activities." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:LithologyEnum ; + rdfs:label "Conglomerate" ; + rdfs:subClassOf nmdc:LithologyEnum . -nmdc:mags_list a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "mags_list" ; - rdfs:range nmdc:MagBin ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:LithologyEnum ; + rdfs:label "Diatomite" ; + rdfs:subClassOf nmdc:LithologyEnum . -nmdc:manganese a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "manganese" ; - dcterms:title "manganese" ; - rdfs:range nmdc:QuantityValue ; - rdfs:seeAlso ; - rdfs:subPropertyOf nmdc:attribute ; - skos:altLabel "manganese" ; - skos:definition "Concentration of manganese in the sample" ; - skos:inScheme nmdc:nmdc ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "mg/kg (ppm)" . + a owl:Class, + nmdc:LithologyEnum ; + rdfs:label "Dolomite" ; + rdfs:subClassOf nmdc:LithologyEnum . -nmdc:material_component_separation a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "material_component_separation" ; - rdfs:range linkml:String ; - skos:definition "A material processing in which components of an input material become segregated in space" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:LithologyEnum ; + rdfs:label "Limestone" ; + rdfs:subClassOf nmdc:LithologyEnum . -nmdc:material_sample_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "material_sample_set" ; - dcterms:title "material sample set" ; - rdfs:range nmdc:MaterialSample ; - skos:inScheme nmdc:sample_prep . + a owl:Class, + nmdc:LithologyEnum ; + rdfs:label "Sandstone" ; + rdfs:subClassOf nmdc:LithologyEnum . -nmdc:material_sampling_activity_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "material_sampling_activity_set" ; - dcterms:title "material sampling activity set" ; - rdfs:range nmdc:MaterialSamplingActivity ; - skos:inScheme nmdc:sample_prep . + a owl:Class, + nmdc:LithologyEnum ; + rdfs:label "Shale" ; + rdfs:subClassOf nmdc:LithologyEnum . -nmdc:md5_checksum a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "md5_checksum" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf nmdc:attribute ; - skos:definition "MD5 checksum of file (pre-compressed)" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:LithologyEnum ; + rdfs:label "Siltstone" ; + rdfs:subClassOf nmdc:LithologyEnum . -nmdc:members_id a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "members_id" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:LithologyEnum ; + rdfs:label "Volcanic" ; + rdfs:subClassOf nmdc:LithologyEnum . -nmdc:metabolite_quantified a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "metabolite_quantified" ; - rdfs:range nmdc:ChemicalEntity ; - skos:definition "the specific metabolite identifier" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:LithologyEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:LithologyEnum . -nmdc:metabolomics_analysis_activity_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "metabolomics_analysis_activity_set" ; - rdfs:range nmdc:MetabolomicsAnalysisActivity ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of metabolomics analysis activities." ; - skos:inScheme nmdc:nmdc . +nmdc:MagBin a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MagBin" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:num_t_rna ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:num_23s ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:num_23s ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:contamination ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gtdbtk_phylum ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:num_5s ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gtdbtk_phylum ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gtdbtk_genus ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:bin_name ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gtdbtk_family ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gtdbtk_class ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:bin_name ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:members_id ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:gtdbtk_species ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:bin_name ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:number_of_contig ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gtdbtk_family ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:gene_count ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:gtdbtk_domain ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:total_bases ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:bin_quality ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:num_23s ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:completeness ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:completeness ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:gtdbtk_phylum ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:gtdbtk_family ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gtdbtk_genus ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:bin_quality ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:num_t_rna ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:number_of_contig ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:num_5s ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:num_16s ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:completeness ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:contamination ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:number_of_contig ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gtdbtk_species ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:num_16s ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:total_bases ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:gtdbtk_class ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:num_t_rna ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gtdbtk_class ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gtdbtk_order ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:members_id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:bin_quality ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:num_16s ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:gtdbtk_order ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gene_count ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:total_bases ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:num_5s ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:members_id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gtdbtk_order ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gtdbtk_species ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gene_count ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gtdbtk_domain ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gtdbtk_domain ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:contamination ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:gtdbtk_genus ] ; + skos:inScheme nmdc:core . -nmdc:metagenome_annotation_activity_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "metagenome_annotation_activity_set" ; - rdfs:range nmdc:MetagenomeAnnotationActivity ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of metagenome annotation activities." ; - skos:inScheme nmdc:nmdc . +nmdc:MagsAnalysisActivity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MagsAnalysisActivity" ; + dcterms:title "Metagenome-Assembled Genome analysis activity" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:unbinned_contig_num ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:unbinned_contig_num ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:binned_contig_num ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:low_depth_contig_num ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:low_depth_contig_num ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:unbinned_contig_num ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:binned_contig_num ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:too_short_contig_num ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:binned_contig_num ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:input_contig_num ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MagBin ; + owl:onProperty nmdc:mags_list ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:mags_list ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:low_depth_contig_num ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:too_short_contig_num ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:too_short_contig_num ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:input_contig_num ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:input_contig_num ], + nmdc:WorkflowExecutionActivity ; + skos:definition "A workflow execution activity that uses computational binning tools to group assembled contigs into genomes" ; + skos:inScheme nmdc:workflow_execution_activity . -nmdc:metagenome_annotation_id a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "metagenome_annotation_id" ; - rdfs:range nmdc:WorkflowExecutionActivity ; - skos:inScheme nmdc:nmdc . +nmdc:MaterialSamplingActivity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MaterialSamplingActivity" ; + dcterms:title "Material sampling activity" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:sampling_method ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:sampling_method ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:amount_collected ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:amount_collected ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:material_output ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:material_output ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:SamplingMethodEnum ; + owl:onProperty nmdc:sampling_method ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:collected_into ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:collected_into ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:amount_collected ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:material_output ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:collected_into ] ; + skos:altLabel "weighing-activity" ; + skos:exactMatch OBI:0000744 ; + skos:inScheme nmdc:sample_prep . -nmdc:metagenome_assembly_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "metagenome_assembly_set" ; - rdfs:range nmdc:MetagenomeAssembly ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of metagenome assembly activities." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:MechStrucEnum ; + rdfs:label "boat" ; + rdfs:subClassOf nmdc:MechStrucEnum . -nmdc:metagenome_sequencing_activity_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "metagenome_sequencing_activity_set" ; - rdfs:range nmdc:MetagenomeSequencingActivity ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of metagenome sequencing activities." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:MechStrucEnum ; + rdfs:label "bus" ; + rdfs:subClassOf nmdc:MechStrucEnum . -nmdc:metaproteomics_analysis_activity_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "metaproteomics_analysis_activity_set" ; - rdfs:range nmdc:MetaproteomicsAnalysisActivity ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of metaproteomics analysis activities." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:MechStrucEnum ; + rdfs:label "car" ; + rdfs:subClassOf nmdc:MechStrucEnum . -nmdc:metatranscriptome_activity_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "metatranscriptome_activity_set" ; - rdfs:range nmdc:MetatranscriptomeActivity ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of metatranscriptome analysis activities." ; - skos:inScheme nmdc:nmdc . - -nmdc:mgnify_analysis_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "mgnify_analysis_identifiers" ; - rdfs:subPropertyOf nmdc:analysis_identifiers, - nmdc:mgnify_identifiers ; - skos:editorialNote "removed pattern: \"^mgnify:MGYA[0-9]+$\" ## TODO https://github.com/bioregistry/bioregistry/issues/109" ; - skos:inScheme nmdc:external_identifiers . - -nmdc:mgnify_project_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "mgnify_project_identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^mgnify.proj:[A-Z]+[0-9]+$" ] ) ] ; - rdfs:subPropertyOf nmdc:mgnify_identifiers, - nmdc:study_identifiers ; - skos:definition "identifiers for corresponding project in MGnify" ; - skos:inScheme nmdc:external_identifiers . - -nmdc:micro_biomass_c_meth a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "micro_biomass_c_meth" ; - dcterms:title "microbial biomass carbon method" ; - rdfs:seeAlso ; - skos:definition "Reference or method used in determining microbial biomass carbon" ; - skos:inScheme ; - skos:note "required if \"microbial_biomass_c\" is provided" ; - sh:order 11 . - -nmdc:micro_biomass_n_meth a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "micro_biomass_n_meth" ; - dcterms:title "microbial biomass nitrogen method" ; - rdfs:seeAlso ; - skos:definition "Reference or method used in determining microbial biomass nitrogen" ; - skos:inScheme ; - skos:note "required if \"microbial_biomass_n\" is provided" ; - sh:order 13 . - -nmdc:microbial_biomass_c a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "microbial_biomass_c" ; - dcterms:title "microbial biomass carbon" ; - rdfs:seeAlso ; - skos:definition "The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer." ; - skos:inScheme ; - skos:note "If you provide this, correction factors used for conversion to the final units and method are required" ; - sh:order 10 . - -nmdc:microbial_biomass_n a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "microbial_biomass_n" ; - dcterms:title "microbial biomass nitrogen" ; - rdfs:seeAlso ; - skos:definition "The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer." ; - skos:inScheme ; - skos:note "If you provide this, correction factors used for conversion to the final units and method are required" ; - sh:order 12 . - -nmdc:min_q_value a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "min_q_value" ; - rdfs:range linkml:Float ; - rdfs:seeAlso OBI:0001442 ; - skos:definition "smallest Q-Value associated with the peptide sequence as provided by MSGFPlus tool" ; - skos:inScheme nmdc:core . - -nmdc:mod_date a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "mod_date" ; - rdfs:range linkml:String ; - skos:definition "The last date on which the database information was modified." ; - skos:inScheme nmdc:nmdc . - -nmdc:model a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "model" ; - rdfs:range nmdc:InstrumentModelEnum ; - skos:inScheme nmdc:nmdc . - -nmdc:modifier_substance a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "modifier_substance" ; - rdfs:range linkml:String ; - skos:definition "The type of modification being done" ; - skos:inScheme nmdc:nmdc . - -nmdc:ncbi_project_name a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ncbi_project_name" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:nmdc . - -nmdc:ncbi_taxonomy_name a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "ncbi_taxonomy_name" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:nmdc . - -nmdc:neon_biosample_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "neon_biosample_identifiers" ; - rdfs:subPropertyOf nmdc:biosample_identifiers, - nmdc:neon_identifiers ; - skos:inScheme nmdc:external_identifiers . - -nmdc:neon_study_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "neon_study_identifiers" ; - rdfs:subPropertyOf nmdc:neon_identifiers, - nmdc:study_identifiers ; - skos:inScheme nmdc:external_identifiers . - -nmdc:nitrate_nitrogen a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "nitrate_nitrogen" ; - dcterms:title "nitrate_nitrogen" ; - rdfs:range nmdc:QuantityValue ; - rdfs:seeAlso ; - rdfs:subPropertyOf nmdc:attribute ; - skos:altLabel "NO3-N", - "nitrate_nitrogen" ; - skos:definition "Concentration of nitrate nitrogen in the sample" ; - skos:inScheme nmdc:nmdc ; - skos:note "often below some specified limit of detection" ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "mg/kg" . - -nmdc:nitrite_nitrogen a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "nitrite_nitrogen" ; - dcterms:title "nitrite_nitrogen" ; - rdfs:range nmdc:QuantityValue ; - rdfs:seeAlso ; - rdfs:subPropertyOf nmdc:attribute ; - skos:altLabel "NO2-N", - "nitrite_nitrogen" ; - skos:definition "Concentration of nitrite nitrogen in the sample" ; - skos:inScheme nmdc:nmdc ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "mg/kg" . + a owl:Class, + nmdc:MechStrucEnum ; + rdfs:label "carriage" ; + rdfs:subClassOf nmdc:MechStrucEnum . -nmdc:nom_analysis_activity_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "nom_analysis_activity_set" ; - rdfs:range nmdc:NomAnalysisActivity ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of natural organic matter (NOM) analysis activities." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:MechStrucEnum ; + rdfs:label "coach" ; + rdfs:subClassOf nmdc:MechStrucEnum . -nmdc:non_microb_biomass a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "non_microb_biomass" ; - dcterms:title "non-microbial biomass" ; - rdfs:seeAlso , - ; - skos:definition "Amount of biomass; should include the name for the part of biomass measured, e.g.insect, plant, total. Can include multiple measurements separated by ;" ; - skos:inScheme ; - sh:order 8 . + a owl:Class, + nmdc:MechStrucEnum ; + rdfs:label "elevator" ; + rdfs:subClassOf nmdc:MechStrucEnum . -nmdc:non_microb_biomass_method a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "non_microb_biomass_method" ; - dcterms:title "non-microbial biomass method" ; - rdfs:seeAlso ; - skos:definition "Reference or method used in determining biomass" ; - skos:inScheme ; - skos:note "required if \"non-microbial biomass\" is provided" ; - sh:order 9 . + a owl:Class, + nmdc:MechStrucEnum ; + rdfs:label "escalator" ; + rdfs:subClassOf nmdc:MechStrucEnum . -nmdc:num_16s a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "num_16s" ; - rdfs:range linkml:Integer ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:MechStrucEnum ; + rdfs:label "subway" ; + rdfs:subClassOf nmdc:MechStrucEnum . -nmdc:num_23s a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "num_23s" ; - rdfs:range linkml:Integer ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:MechStrucEnum ; + rdfs:label "train" ; + rdfs:subClassOf nmdc:MechStrucEnum . -nmdc:num_5s a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "num_5s" ; - rdfs:range linkml:Integer ; +nmdc:MetaboliteQuantification a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MetaboliteQuantification" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:metabolite_quantified ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:highest_similarity_score ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ChemicalEntity ; + owl:onProperty nmdc:metabolite_quantified ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:metabolite_quantified ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:highest_similarity_score ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:alternative_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Uriorcurie [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$" ] ) ] ) ] ; + owl:onProperty nmdc:alternative_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:highest_similarity_score ] ; + skos:definition "This is used to link a metabolomics analysis workflow to a specific metabolite" ; skos:inScheme nmdc:core . -nmdc:num_aligned_reads a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "num_aligned_reads" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "The sequence count number of input reads aligned to assembled contigs." ; +nmdc:MetabolomicsAnalysisActivity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MetabolomicsAnalysisActivity" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_calibration ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MetaboliteQuantification ; + owl:onProperty nmdc:has_metabolite_quantifications ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_metabolite_quantifications ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:has_calibration ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:has_calibration ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + nmdc:WorkflowExecutionActivity ; skos:inScheme nmdc:workflow_execution_activity . -nmdc:num_input_reads a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "num_input_reads" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "The sequence count number of input reads for assembly." ; - skos:inScheme nmdc:workflow_execution_activity . - -nmdc:num_t_rna a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "num_t_rna" ; - rdfs:range linkml:Integer ; - skos:inScheme nmdc:core . +nmdc:MetagenomeAssembly a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MetagenomeAssembly" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_n50 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ctg_n50 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:num_input_reads ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gc_std ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:ctg_n90 ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_n90 ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaffolds ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ctg_powsum ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_n50 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_n90 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ctg_l50 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_bp ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:contig_bp ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gc_std ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:gc_std ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaffolds ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ctg_logsum ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gc_avg ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_n_gt50k ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:ctg_l50 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:num_aligned_reads ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_n_gt50k ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:insdc_assembly_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gc_avg ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:contigs ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_powsum ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:insdc_assembly_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_logsum ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ctg_n90 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ctg_l90 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_powsum ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_pct_gt50k ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gap_pct ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_l_gt50k ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_pct_gt50k ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaffolds ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:ctg_n50 ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ctg_n50 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_n90 ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^insdc.sra:[A-Z]+[0-9]+(\\.[0-9]+)?$" ] ) ] ; + owl:onProperty nmdc:insdc_assembly_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:contig_bp ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_l50 ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_l90 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ctg_logsum ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:ctg_l90 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:asm_score ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_n_gt50k ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_l_gt50k ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:gap_pct ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_l50 ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_max ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_logsum ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ctg_l50 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:ctg_powsum ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:ctg_max ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:asm_score ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_l90 ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:num_input_reads ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:num_input_reads ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:num_aligned_reads ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_bp ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_max ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_bp ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:gc_avg ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_max ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_l_gt50k ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:contigs ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:asm_score ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_logsum ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_l50 ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ctg_powsum ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ctg_max ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:contig_bp ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ctg_l90 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_l90 ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:scaf_n50 ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ctg_n90 ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:num_aligned_reads ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:scaf_powsum ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:ctg_logsum ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ctg_max ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:scaf_pct_gt50k ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gap_pct ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:contigs ], + nmdc:WorkflowExecutionActivity ; + skos:definition "A workflow execution activity that converts sequencing reads into an assembled metagenome." ; + skos:inScheme nmdc:workflow_execution_activity ; + skos:note "instances of this class may use a de novo assembly strategy in most or all cases relevant to NMDC" . -nmdc:number_of_contig a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "number_of_contig" ; - rdfs:range linkml:Integer ; - skos:inScheme nmdc:core . +nmdc:MetagenomeSequencingActivity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MetagenomeSequencingActivity" ; + dcterms:title "Metagenome sequencing activity" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + nmdc:WorkflowExecutionActivity ; + skos:definition "Initial sequencing activity that precedes any analysis. This activity has output(s) that are the raw sequencing data." ; + skos:inScheme nmdc:workflow_execution_activity . -nmdc:objective a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "objective" ; - rdfs:range linkml:String ; - skos:definition "The scientific objectives associated with the entity. It SHOULD correspond to scientific norms for objectives field in a structured abstract." ; - skos:inScheme nmdc:core ; - skos:mappingRelation . +nmdc:MetaproteomicsAnalysisActivity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MetaproteomicsAnalysisActivity" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:used ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:used ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:used ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:PeptideQuantification ; + owl:onProperty nmdc:has_peptide_quantifications ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_peptide_quantifications ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + nmdc:WorkflowExecutionActivity ; + skos:inScheme nmdc:workflow_execution_activity . -nmdc:omics_processing_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "omics_processing_set" ; - rdfs:range nmdc:OmicsProcessing ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of omics processings within it." ; - skos:inScheme nmdc:nmdc . - -nmdc:omics_type a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "omics_type" ; - rdfs:range nmdc:ControlledTermValue ; - skos:definition "The type of omics data" ; - skos:editorialNote "was the range string at one point? the values in MongoDB don't look like NMDC classes" ; - skos:inScheme nmdc:nmdc . - -nmdc:org_nitro_method a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "org_nitro_method" ; - dcterms:title "organic nitrogen method" ; - rdfs:seeAlso , - ; - skos:definition "Method used for obtaining organic nitrogen" ; - skos:inScheme ; - skos:note "required if \"org_nitro\" is provided" ; - sh:order 14 . - -nmdc:other_treatment a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "other_treatment" ; - dcterms:title "other treatments" ; - rdfs:seeAlso ; - skos:definition "Other treatments applied to your samples that are not applicable to the provided fields" ; - skos:editorialNote "Values entered here will be used to determine potential new slots." ; - skos:inScheme ; - skos:note "This is an open text field to provide any treatments that cannot be captured in the provided slots." ; - sh:order 15 . - -nmdc:output_base_count a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "output_base_count" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:read_qc_analysis_statistic ; - skos:definition "After QC analysis nucleotide base count number." ; +nmdc:MetatranscriptomeActivity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MetatranscriptomeActivity" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:type ], + nmdc:WorkflowExecutionActivity ; + skos:definition "A metatranscriptome activity that e.g. pools assembly and annotation activity." ; skos:inScheme nmdc:workflow_execution_activity . -nmdc:output_read_bases a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "output_read_bases" ; - rdfs:range linkml:Float ; - skos:definition "TODO" ; - skos:inScheme nmdc:workflow_execution_activity . +nmdc:MixingProcess a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MixingProcess" ; + dcterms:contributor ORCID:0000-0002-8683-0050, + ORCID:0009-0001-1555-1601 ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:duration ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty nmdc:duration ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ProcessedSample ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:allValuesFrom [ owl:unionOf ( nmdc:Biosample nmdc:ProcessedSample ) ] ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:AnonymousInstrument ; + owl:onProperty nmdc:instrument_used ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:instrument_used ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:duration ], + nmdc:PlannedProcess ; + skos:definition """The combining of components, particles or layers into a more homogeneous state. +""" ; + skos:inScheme nmdc:nmdc ; + skos:note "Homogeneity may be considered to have been achieved in a practical sense when the sampling error of the processed portion is negligible compared to the total error of the measurement system.", + "The mixing may be achieved manually or mechanically by shifting the material with stirrers or pumps or by revolving or shaking the container.", + "The process must not permit segregation of particles of different size or properties." . -nmdc:output_read_count a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "output_read_count" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:read_qc_analysis_statistic ; - skos:definition "After QC analysis sequence count number." ; +nmdc:NomAnalysisActivity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "NomAnalysisActivity" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:has_calibration ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:used ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:used ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:has_calibration ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:used ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_calibration ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + nmdc:WorkflowExecutionActivity ; skos:inScheme nmdc:workflow_execution_activity . -nmdc:pcr_cycles a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "pcr_cycles" ; - rdfs:range linkml:Integer ; - skos:exactMatch OBI:0002475 ; - skos:inScheme nmdc:nmdc . - -nmdc:peptide_sequence a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "peptide_sequence" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:core . - -nmdc:peptide_sequence_count a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "peptide_sequence_count" ; - rdfs:range linkml:Integer ; - skos:definition "count of peptide sequences grouped to the best_protein" ; - skos:inScheme nmdc:core . - -nmdc:peptide_spectral_count a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "peptide_spectral_count" ; - rdfs:range linkml:Integer ; - skos:definition "sum of filter passing MS2 spectra associated with the peptide sequence within a given LC-MS/MS data file" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:OccupDocumentEnum ; + rdfs:label "automated count" ; + rdfs:subClassOf nmdc:OccupDocumentEnum . -nmdc:peptide_sum_masic_abundance a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "peptide_sum_masic_abundance" ; - rdfs:range linkml:Integer ; - skos:definition "combined MS1 extracted ion chromatograms derived from MS2 spectra associated with the peptide sequence from a given LC-MS/MS data file using the MASIC tool" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:OccupDocumentEnum ; + rdfs:label "estimate" ; + rdfs:subClassOf nmdc:OccupDocumentEnum . -nmdc:phase a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "phase" ; - rdfs:range [ a rdfs:Datatype ; - owl:intersectionOf ( linkml:Integer [ a rdfs:Datatype ; - owl:onDatatype xsd:integer ; - owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; - owl:onDatatype xsd:integer ; - owl:withRestrictions ( [ xsd:maxInclusive 2 ] ) ] ) ] ; - skos:definition "The phase for a coding sequence entity. For example, phase of a CDS as represented in a GFF3 with a value of 0, 1 or 2." ; - skos:exactMatch ; - skos:inScheme nmdc:annotation . + a owl:Class, + nmdc:OccupDocumentEnum ; + rdfs:label "manual count" ; + rdfs:subClassOf nmdc:OccupDocumentEnum . -nmdc:planned_process_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "planned_process_set" ; - rdfs:range nmdc:PlannedProcess ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of planned processes within it." ; - skos:inScheme nmdc:nmdc ; - skos:note "PlannedProcess instances aggregated by this slot will require the designated_class slot" . + a owl:Class, + nmdc:OccupDocumentEnum ; + rdfs:label "videos" ; + rdfs:subClassOf nmdc:OccupDocumentEnum . -nmdc:pooling_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "pooling_set" ; - rdfs:range nmdc:Pooling ; - rdfs:subPropertyOf nmdc:object_set ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:OrganismCountEnum ; + rdfs:label "ATP" ; + rdfs:subClassOf nmdc:OrganismCountEnum . -nmdc:principal_investigator a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "principal_investigator" ; - rdfs:range nmdc:PersonValue ; - rdfs:subPropertyOf nmdc:attribute ; - skos:altLabel "PI" ; - skos:definition "Principal Investigator who led the study and/or generated the dataset." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:OrganismCountEnum ; + rdfs:label "MPN" ; + rdfs:subClassOf nmdc:OrganismCountEnum . -nmdc:processed_sample_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "processed_sample_set" ; - rdfs:range nmdc:ProcessedSample ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of processed samples within it." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:OrganismCountEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:OrganismCountEnum . -nmdc:processing_institution a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "processing_institution" ; - rdfs:range nmdc:ProcessingInstitutionEnum ; - skos:definition "The organization that processed the sample." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:OxyStatSampEnum ; + rdfs:label "aerobic" ; + rdfs:subClassOf nmdc:OxyStatSampEnum . -nmdc:profile_image_url a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "profile_image_url" ; - rdfs:domain nmdc:PersonValue ; - rdfs:range linkml:String ; - skos:definition "A url that points to an image of a person." ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:OxyStatSampEnum ; + rdfs:label "anaerobic" ; + rdfs:subClassOf nmdc:OxyStatSampEnum . -nmdc:project_id a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "project_id" ; - dcterms:title "project ID" ; - skos:definition "Proposal IDs or names associated with dataset" ; - skos:inScheme ; - sh:order 1 . + a owl:Class, + nmdc:OxyStatSampEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:OxyStatSampEnum . -nmdc:proport_woa_temperature a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "proport_woa_temperature" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:nmdc . +nmdc:PeptideQuantification a owl:Class, + linkml:ClassDefinition ; + rdfs:label "PeptideQuantification" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:best_protein ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:peptide_sum_masic_abundance ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:peptide_sequence ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:min_q_value ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:best_protein ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:min_q_value ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:peptide_sum_masic_abundance ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:peptide_spectral_count ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:peptide_sum_masic_abundance ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:peptide_spectral_count ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:GeneProduct ; + owl:onProperty nmdc:best_protein ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:peptide_sequence ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:min_q_value ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:all_proteins ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:peptide_sequence ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:peptide_spectral_count ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:GeneProduct ; + owl:onProperty nmdc:all_proteins ] ; + skos:definition "This is used to link a metaproteomics analysis workflow to a specific peptide sequence and related information" ; + skos:inScheme nmdc:core . -nmdc:proposal_dna a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "proposal_dna" ; - dcterms:title "DNA proposal ID" ; - skos:inScheme ; - skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; - sh:order 19 . + a owl:Class, + nmdc:PlantGrowthMedEnum ; + rdfs:label "other artificial liquid medium" ; + rdfs:subClassOf nmdc:PlantGrowthMedEnum . -nmdc:proposal_rna a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "proposal_rna" ; - dcterms:title "RNA proposal ID" ; - skos:inScheme ; - skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; - sh:order 19 . + a owl:Class, + nmdc:PlantGrowthMedEnum ; + rdfs:label "other artificial solid medium" ; + rdfs:subClassOf nmdc:PlantGrowthMedEnum . -nmdc:protein_spectral_count a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "protein_spectral_count" ; - rdfs:range linkml:Integer ; - skos:definition "sum of filter passing MS2 spectra associated with the best protein within a given LC-MS/MS data file" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:PlantGrowthMedEnum ; + rdfs:label "peat moss" ; + rdfs:subClassOf nmdc:PlantGrowthMedEnum . -nmdc:protein_sum_masic_abundance a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "protein_sum_masic_abundance" ; - rdfs:range linkml:Integer ; - skos:definition "combined MS1 extracted ion chromatograms derived from MS2 spectra associated with the best protein from a given LC-MS/MS data file using the MASIC tool" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:PlantGrowthMedEnum ; + rdfs:label "perlite" ; + rdfs:subClassOf nmdc:PlantGrowthMedEnum . -nmdc:protocol_link a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "protocol_link" ; - rdfs:range nmdc:Protocol ; - skos:inScheme nmdc:basic_slots . + a owl:Class, + nmdc:PlantGrowthMedEnum ; + rdfs:label "pumice" ; + rdfs:subClassOf nmdc:PlantGrowthMedEnum . -nmdc:quality_control_report a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "quality_control_report" ; - rdfs:range nmdc:QualityControlReport ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:PlantGrowthMedEnum ; + rdfs:label "sand" ; + rdfs:subClassOf nmdc:PlantGrowthMedEnum . -nmdc:reaction_activity_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "reaction_activity_set" ; - rdfs:range nmdc:ReactionActivity ; - skos:inScheme nmdc:sample_prep . + a owl:Class, + nmdc:PlantGrowthMedEnum ; + rdfs:label "soil" ; + rdfs:subClassOf nmdc:PlantGrowthMedEnum . -nmdc:reaction_temperature a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "reaction_temperature" ; - skos:inScheme nmdc:sample_prep . + a owl:Class, + nmdc:PlantGrowthMedEnum ; + rdfs:label "vermiculite" ; + rdfs:subClassOf nmdc:PlantGrowthMedEnum . -nmdc:read_based_taxonomy_analysis_activity_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "read_based_taxonomy_analysis_activity_set" ; - rdfs:range nmdc:ReadBasedTaxonomyAnalysisActivity ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of read based analysis activities." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:PlantGrowthMedEnum ; + rdfs:label "water" ; + rdfs:subClassOf nmdc:PlantGrowthMedEnum . -nmdc:read_qc_analysis_activity_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "read_qc_analysis_activity_set" ; - rdfs:range nmdc:ReadQcAnalysisActivity ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of read QC analysis activities." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Androdioecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:relevant_protocols a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "relevant_protocols" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Androecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:replicate_number a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "replicate_number" ; - dcterms:title "replicate number" ; - skos:definition "If sending biological replicates, indicate the rep number here." ; - skos:inScheme ; - skos:note "This will guide staff in ensuring your samples are blocked & randomized correctly" ; - sh:order 6 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Androgynomonoecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:right_participants a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "right_participants" ; - rdfs:range nmdc:ReactionParticipant ; - rdfs:subPropertyOf nmdc:has_participants ; - skos:inScheme nmdc:annotation . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Androgynous" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_absorb1 a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_absorb1" ; - dcterms:title "RNA absorbance 260/280" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:biomaterial_purity ; - skos:definition "260/280 measurement of RNA sample purity" ; - skos:inScheme ; - skos:note "Recommended value is between 1 and 3." ; - sh:order 7 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Andromonoecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_absorb2 a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_absorb2" ; - dcterms:title "RNA absorbance 260/230" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:biomaterial_purity ; - skos:definition "260/230 measurement of RNA sample purity" ; - skos:inScheme ; - skos:note "Recommended value is between 1 and 3." ; - sh:order 8 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Bisexual" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_collect_site a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_collect_site" ; - dcterms:title "RNA collection site" ; - skos:definition "Provide information on the site your RNA sample was collected from" ; - skos:inScheme ; - sh:order 15 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Dichogamous" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_concentration a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_concentration" ; - dcterms:title "RNA concentration in ng/ul" ; - rdfs:range [ a rdfs:Datatype ; - owl:intersectionOf ( linkml:Float [ a rdfs:Datatype ; - owl:onDatatype xsd:integer ; - owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; - owl:onDatatype xsd:integer ; - owl:withRestrictions ( [ xsd:maxInclusive 1000 ] ) ] ) ] ; - rdfs:seeAlso nmdc:nucleic_acid_concentration ; - skos:inScheme ; - skos:note "Units must be in ng/uL. Enter the numerical part only. Must be calculated using a fluorometric method. Acceptable values are 0-2000." ; - sh:order 5 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Diclinous" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_cont_type a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_cont_type" ; - dcterms:title "RNA container type" ; - rdfs:range nmdc:JgiContTypeEnum ; - skos:definition "Tube or plate (96-well)" ; - skos:inScheme ; - sh:order 10 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Dioecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_cont_well a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_cont_well" ; - dcterms:title "RNA plate position" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^(?!A1|A12|H1|H12)(([A-H][1-9])|([A-H]1[0-2]))$" ] ) ] ; - skos:inScheme ; - skos:note "For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).", - "JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass validation.", - "Leave blank if the sample will be shipped in a tube.", - "Required when 'plate' is selected for container type." ; - sh:order 11 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Gynodioecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_container_id a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_container_id" ; - dcterms:title "RNA container label" ; - skos:inScheme ; - skos:note "Must be unique across all tubes and plates, and <20 characters. All samples in a plate should have the same plate label." ; - sh:order 9 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Gynoecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_isolate_meth a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_isolate_meth" ; - dcterms:title "RNA isolation method" ; - skos:definition "Describe the method/protocol/kit used to extract DNA/RNA." ; - skos:inScheme ; - sh:order 16 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Gynomonoecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_organisms a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_organisms" ; - dcterms:title "RNA expected organisms" ; - skos:definition "List any organisms known or suspected to grow in co-culture, as well as estimated % of the organism in that culture." ; - skos:inScheme ; - sh:order 14 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Hermaphroditic" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_project_contact a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_project_contact" ; - dcterms:title "RNA seq project contact" ; - skos:inScheme ; - skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; - sh:order 18 . - -nmdc:rna_samp_id a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_samp_id" ; - dcterms:title "RNA sample ID" ; - skos:inScheme ; - skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; - sh:order 3 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Imperfect" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_sample_format a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_sample_format" ; - dcterms:title "RNA sample format" ; - rdfs:range nmdc:RnaSampleFormatEnum ; - skos:definition "Solution in which the RNA sample has been suspended" ; - skos:inScheme ; - sh:order 12 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Monoclinous" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_sample_name a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_sample_name" ; - dcterms:title "RNA sample name" ; - rdfs:range [ a rdfs:Datatype ; - owl:intersectionOf ( [ a rdfs:Datatype ; - owl:onDatatype xsd:integer ; - owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; - owl:onDatatype xsd:integer ; - owl:withRestrictions ( [ xsd:maxInclusive 2000 ] ) ] ) ] ; - skos:definition "Give the RNA sample a name that is meaningful to you. Sample names must be unique across all JGI projects and contain a-z, A-Z, 0-9, - and _ only." ; - skos:inScheme ; - sh:order 4 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Monoecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_seq_project a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_seq_project" ; - dcterms:title "RNA seq project ID" ; - skos:inScheme ; - skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; - sh:order 1 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Perfect" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_seq_project_name a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_seq_project_name" ; - dcterms:title "RNA seq project name" ; - skos:inScheme ; - skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; - sh:order 2 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Polygamodioecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_seq_project_pi a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_seq_project_pi" ; - dcterms:title "RNA seq project PI" ; - skos:inScheme ; - skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; - sh:order 17 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Polygamomonoecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:rna_volume a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "rna_volume" ; - dcterms:title "RNA volume in ul" ; - rdfs:range [ a rdfs:Datatype ; - owl:intersectionOf ( linkml:Float [ a rdfs:Datatype ; - owl:onDatatype xsd:integer ; - owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; - owl:onDatatype xsd:integer ; - owl:withRestrictions ( [ xsd:maxInclusive 1000 ] ) ] ) ] ; - skos:inScheme ; - skos:note "Units must be in uL. Enter the numerical part only. Value must be 0-1000. This form accepts values < 25, but JGI may refuse to process them unless permission has been granted by a project manager" ; - sh:order 6 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Polygamous" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:salinity_category a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "salinity_category" ; - rdfs:range linkml:String ; - rdfs:seeAlso ; - skos:definition "Categorical description of the sample's salinity. Examples: halophile, halotolerant, hypersaline, huryhaline" ; - skos:editorialNote "maps to gold:salinity" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Protandrous" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:sample_collection_day a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sample_collection_day" ; - rdfs:range linkml:Integer ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Protogynous" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:sample_collection_hour a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sample_collection_hour" ; - rdfs:range linkml:Integer ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Subandroecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:sample_collection_minute a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sample_collection_minute" ; - rdfs:range linkml:Integer ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Subdioecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:sample_collection_month a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sample_collection_month" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Subgynoecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:sample_collection_site a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sample_collection_site" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Synoecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:sample_collection_year a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sample_collection_year" ; - rdfs:range linkml:Integer ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Trimonoecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:sample_link a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sample_link" ; - dcterms:title "sample linkage" ; - rdfs:range linkml:String ; - skos:definition "A unique identifier to assign parent-child, subsample, or sibling samples. This is relevant when a sample or other material was used to generate the new sample." ; - skos:inScheme ; - skos:note "This field allows multiple entries separated by ; (Examples: Soil collected from the field will link with the soil used in an incubation. The soil a plant was grown in links to the plant sample. An original culture sample was transferred to a new vial and generated a new sample)" ; - sh:order 5 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Trioecious" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:sample_shipped a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sample_shipped" ; - dcterms:title "sample shipped amount" ; - skos:definition "The total amount or size (volume (ml), mass (g) or area (m2) ) of sample sent to EMSL." ; - skos:inScheme ; - skos:note "This field is only required when completing metadata for samples being submitted to EMSL for analyses." ; - sh:order 3 . + a owl:Class, + nmdc:PlantSexEnum ; + rdfs:label "Unisexual" ; + rdfs:subClassOf nmdc:PlantSexEnum . -nmdc:sample_type a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sample_type" ; - dcterms:title "sample type" ; - rdfs:range nmdc:SampleTypeEnum ; - skos:definition "Type of sample being submitted" ; - skos:inScheme ; - skos:note "This can vary from 'environmental package' if the sample is an extraction." ; - sh:order 2 . + a owl:Class, + nmdc:ProfilePositionEnum ; + rdfs:label "backslope" ; + rdfs:subClassOf nmdc:ProfilePositionEnum . -nmdc:sampling_method a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "sampling_method" ; - dcterms:title "sampling method" ; - rdfs:range nmdc:SamplingMethodEnum ; - skos:inScheme nmdc:sample_prep . + a owl:Class, + nmdc:ProfilePositionEnum ; + rdfs:label "footslope" ; + rdfs:subClassOf nmdc:ProfilePositionEnum . -nmdc:scaf_bp a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "scaf_bp" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Total size in bp of all scaffolds." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:ProfilePositionEnum ; + rdfs:label "shoulder" ; + rdfs:subClassOf nmdc:ProfilePositionEnum . -nmdc:scaf_l50 a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "scaf_l50" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Given a set of scaffolds, the L50 is defined as the sequence length of the shortest scaffold at 50% of the total genome length." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:ProfilePositionEnum ; + rdfs:label "summit" ; + rdfs:subClassOf nmdc:ProfilePositionEnum . -nmdc:scaf_l90 a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "scaf_l90" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all scaffolds of that length or longer contains at least 90% of the sum of the lengths of all scaffolds." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:ProfilePositionEnum ; + rdfs:label "toeslope" ; + rdfs:subClassOf nmdc:ProfilePositionEnum . -nmdc:scaf_l_gt50k a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "scaf_l_gt50k" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Total size in bp of all scaffolds greater than 50 KB." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:QuadPosEnum ; + rdfs:label "East side" ; + rdfs:subClassOf nmdc:QuadPosEnum . -nmdc:scaf_logsum a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "scaf_logsum" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "The sum of the (length*log(length)) of all scaffolds, times some constant. Increase the contiguity, the score will increase" ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:QuadPosEnum ; + rdfs:label "North side" ; + rdfs:subClassOf nmdc:QuadPosEnum . -nmdc:scaf_max a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "scaf_max" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Maximum scaffold length." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:QuadPosEnum ; + rdfs:label "South side" ; + rdfs:subClassOf nmdc:QuadPosEnum . -nmdc:scaf_n50 a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "scaf_n50" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Given a set of scaffolds, each with its own length, the N50 count is defined as the smallest number of scaffolds whose length sum makes up half of genome size." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:QuadPosEnum ; + rdfs:label "West side" ; + rdfs:subClassOf nmdc:QuadPosEnum . -nmdc:scaf_n90 a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "scaf_n90" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Given a set of scaffolds, each with its own length, the N90 count is defined as the smallest number of scaffolds whose length sum makes up 90% of genome size." ; - skos:inScheme nmdc:workflow_execution_activity . +nmdc:QualityControlReport a owl:Class, + linkml:ClassDefinition ; + rdfs:label "QualityControlReport" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:status ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:status ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:StatusEnum ; + owl:onProperty nmdc:status ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:name ] ; + skos:inScheme nmdc:nmdc . -nmdc:scaf_n_gt50k a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "scaf_n_gt50k" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Total sequence count of scaffolds greater than 50 KB." ; - skos:inScheme nmdc:workflow_execution_activity . - -nmdc:scaf_pct_gt50k a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "scaf_pct_gt50k" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Total sequence size percentage of scaffolds greater than 50 KB." ; - skos:inScheme nmdc:workflow_execution_activity . +nmdc:ReactionActivity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "ReactionActivity" ; + dcterms:title "Reaction activity" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:reaction_time ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:material_output ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:material_input ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:reaction_temperature ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:reaction_temperature ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MaterialSample ; + owl:onProperty nmdc:material_input ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:reaction_time ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:reaction_time ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:reaction_temperature ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:material_output ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:material_input ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MaterialSample ; + owl:onProperty nmdc:material_output ] ; + skos:altLabel "reaction-activity" ; + skos:inScheme nmdc:sample_prep . -nmdc:scaf_powsum a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "scaf_powsum" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Powersum of all scaffolds is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25)." ; +nmdc:ReadBasedTaxonomyAnalysisActivity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "ReadBasedTaxonomyAnalysisActivity" ; + dcterms:title "Read based analysis activity" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + nmdc:WorkflowExecutionActivity ; + skos:definition "A workflow execution activity that performs taxonomy classification using sequencing reads" ; skos:inScheme nmdc:workflow_execution_activity . -nmdc:scaffolds a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "scaffolds" ; - rdfs:range linkml:Float ; - rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; - skos:definition "Total sequence count of all scaffolds." ; +nmdc:ReadQcAnalysisActivity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "ReadQcAnalysisActivity" ; + dcterms:title "Read quality control analysis activity" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:input_read_bases ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:input_read_bases ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:input_read_count ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:input_base_count ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:output_base_count ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:output_read_count ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:output_read_count ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:input_base_count ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:input_read_bases ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:output_read_bases ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:output_read_bases ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:output_base_count ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:output_read_bases ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:output_base_count ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:version ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:input_read_count ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:input_read_count ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:input_base_count ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:version ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:output_read_count ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:version ], + nmdc:WorkflowExecutionActivity ; + skos:definition "A workflow execution activity that performs quality control on raw Illumina reads including quality trimming, artifact removal, linker trimming, adapter trimming, spike-in removal, and human/cat/dog/mouse/microbe contaminant removal" ; skos:inScheme nmdc:workflow_execution_activity . -nmdc:separation_method a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "separation_method" ; - rdfs:range nmdc:SeparationMethodEnum ; - skos:definition "The method that was used to separate a substance from a solution or mixture." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:RelSampLocEnum ; + rdfs:label "center of car" ; + rdfs:subClassOf nmdc:RelSampLocEnum . -nmdc:smarts_string a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "smarts_string" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:annotation . + a owl:Class, + nmdc:RelSampLocEnum ; + rdfs:label "edge of car" ; + rdfs:subClassOf nmdc:RelSampLocEnum . -nmdc:smiles a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "smiles" ; - rdfs:range linkml:String ; - skos:definition "A string encoding of a molecular graph, no chiral or isotopic information. There are usually a large number of valid SMILES which represent a given structure. For example, CCO, OCC and C(O)C all specify the structure of ethanol." ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:RelSampLocEnum ; + rdfs:label "under a seat" ; + rdfs:subClassOf nmdc:RelSampLocEnum . -nmdc:soil_annual_season_temp a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "soil_annual_season_temp" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:RnaSampleFormatEnum ; + rdfs:label "10 mM Tris-HCl" ; + rdfs:subClassOf nmdc:RnaSampleFormatEnum . -nmdc:soluble_iron_micromol a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "soluble_iron_micromol" ; - rdfs:range linkml:String ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:RnaSampleFormatEnum ; + rdfs:label "DNAStable" ; + rdfs:subClassOf nmdc:RnaSampleFormatEnum . -nmdc:specific_ecosystem a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "specific_ecosystem" ; - rdfs:seeAlso ; - rdfs:subPropertyOf nmdc:gold_path_field ; - skos:definition "Specific ecosystems represent specific features of the environment like aphotic zone in an ocean or gastric mucosa within a host digestive system. Specific ecosystem is in position 5/5 in a GOLD path." ; - skos:inScheme nmdc:nmdc ; - skos:note "Specific ecosystems help to define samples based on very specific characteristics of an environment under the five-level classification system." . + a owl:Class, + nmdc:RnaSampleFormatEnum ; + rdfs:label "Ethanol" ; + rdfs:subClassOf nmdc:RnaSampleFormatEnum . -nmdc:start_date a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "start_date" ; - rdfs:range linkml:String ; - skos:definition "The date on which any process or activity was started" ; - skos:inScheme nmdc:basic_slots ; - skos:note "The date should be formatted as YYYY-MM-DD", - "We are using string representations of dates until all components of our ecosystem can handle ISO 8610 dates" . + a owl:Class, + nmdc:RnaSampleFormatEnum ; + rdfs:label "Gentegra-DNA" ; + rdfs:subClassOf nmdc:RnaSampleFormatEnum . -nmdc:start_date_inc a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "start_date_inc" ; - dcterms:title "incubation start date" ; - rdfs:seeAlso ; - skos:definition "Date the incubation was started. Only relevant for incubation samples." ; - skos:editorialNote "MIxS collection_date accepts (truncated) ISO8601. DH taking arbitrary precision date only" ; - skos:inScheme ; - skos:note "Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable." ; - sh:order 4 . + a owl:Class, + nmdc:RnaSampleFormatEnum ; + rdfs:label "Gentegra-RNA" ; + rdfs:subClassOf nmdc:RnaSampleFormatEnum . -nmdc:start_time_inc a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "start_time_inc" ; - dcterms:title "incubation start time, GMT" ; - rdfs:seeAlso ; - skos:definition "Time the incubation was started. Only relevant for incubation samples." ; - skos:editorialNote "MIxS collection_date accepts (truncated) ISO8601. DH taking seconds optional time only" ; - skos:inScheme ; - skos:note "Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter" ; - sh:order 5 . + a owl:Class, + nmdc:RnaSampleFormatEnum ; + rdfs:label "Low EDTA TE" ; + rdfs:subClassOf nmdc:RnaSampleFormatEnum . -nmdc:status a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "status" ; - rdfs:range nmdc:StatusEnum ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:RnaSampleFormatEnum ; + rdfs:label "MDA reaction buffer" ; + rdfs:subClassOf nmdc:RnaSampleFormatEnum . -nmdc:stoichiometry a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "stoichiometry" ; - rdfs:range linkml:Integer ; - skos:definition "from reaction participant class" ; - skos:inScheme nmdc:annotation . + a owl:Class, + nmdc:RnaSampleFormatEnum ; + rdfs:label "PBS" ; + rdfs:subClassOf nmdc:RnaSampleFormatEnum . -nmdc:strand a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "strand" ; - skos:definition "The strand on which a feature is located. Has a value of '+' (sense strand or forward strand) or '-' (anti-sense strand or reverse strand)." ; - skos:exactMatch ; - skos:inScheme nmdc:annotation . + a owl:Class, + nmdc:RnaSampleFormatEnum ; + rdfs:label "Pellet" ; + rdfs:subClassOf nmdc:RnaSampleFormatEnum . -nmdc:study_category a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "study_category" ; - rdfs:range nmdc:StudyCategoryEnum ; - skos:definition "The type of research initiative" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:RnaSampleFormatEnum ; + rdfs:label "RNAStable" ; + rdfs:subClassOf nmdc:RnaSampleFormatEnum . -nmdc:study_image a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "study_image" ; - rdfs:domain nmdc:Study ; - rdfs:range nmdc:ImageValue ; - skos:definition "Links a study to one or more images." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:RnaSampleFormatEnum ; + rdfs:label "TE" ; + rdfs:subClassOf nmdc:RnaSampleFormatEnum . -nmdc:study_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "study_set" ; - rdfs:range nmdc:Study ; - rdfs:subPropertyOf nmdc:object_set ; - skos:definition "This property links a database object to the set of studies within it." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:RnaSampleFormatEnum ; + rdfs:label "Water" ; + rdfs:subClassOf nmdc:RnaSampleFormatEnum . -nmdc:subject a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "subject" ; - rdfs:range nmdc:GeneProduct ; - skos:inScheme nmdc:annotation . + a owl:Class, + nmdc:RoomCondtEnum ; + rdfs:label "damaged" ; + rdfs:subClassOf nmdc:RoomCondtEnum . -nmdc:subsurface_depth a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "subsurface_depth" ; - rdfs:range nmdc:QuantityValue ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:RoomCondtEnum ; + rdfs:label "needs repair" ; + rdfs:subClassOf nmdc:RoomCondtEnum . -nmdc:technical_reps a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "technical_reps" ; - dcterms:title "number technical replicate" ; - skos:definition "If sending technical replicates of the same sample, indicate the replicate count." ; - skos:inScheme ; - skos:note "This field is only required when completing metadata for samples being submitted to EMSL for analyses." ; - sh:order 5 . + a owl:Class, + nmdc:RoomCondtEnum ; + rdfs:label "new" ; + rdfs:subClassOf nmdc:RoomCondtEnum . -nmdc:temperature a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "temperature" ; - dcterms:contributor ORCID:0000-0002-8683-0050, - ORCID:0009-0001-1555-1601 ; - rdfs:range nmdc:QuantityValue ; - skos:definition "The value of a temperature measurement or temperature used in a process." ; - skos:editorialNote "Not to be confused with the MIXS:0000113" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:RoomCondtEnum ; + rdfs:label "rupture" ; + rdfs:subClassOf nmdc:RoomCondtEnum . -nmdc:title a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "title" ; - rdfs:range linkml:String ; - skos:definition "A name given to the entity that differs from the name/label programmatically assigned to it. For example, when extracting study information for GOLD, the GOLD system has assigned a name/label. However, for display purposes, we may also wish the capture the title of the proposal that was used to fund the study." ; - skos:exactMatch dcterms:title ; - skos:inScheme nmdc:basic_slots . + a owl:Class, + nmdc:RoomCondtEnum ; + rdfs:label "visible signs of mold/mildew" ; + rdfs:subClassOf nmdc:RoomCondtEnum . -nmdc:too_short_contig_num a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "too_short_contig_num" ; - rdfs:range linkml:Integer ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:RoomCondtEnum ; + rdfs:label "visible wear" ; + rdfs:subClassOf nmdc:RoomCondtEnum . -nmdc:total_bases a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "total_bases" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:RoomConnectedEnum ; + rdfs:label "attic" ; + rdfs:subClassOf nmdc:RoomConnectedEnum . -nmdc:unbinned_contig_num a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "unbinned_contig_num" ; - rdfs:range linkml:Integer ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:RoomConnectedEnum ; + rdfs:label "bathroom" ; + rdfs:subClassOf nmdc:RoomConnectedEnum . -nmdc:url a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "url" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf nmdc:attribute ; - skos:editorialNote "See issue 207 - this clashes with the mixs field" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:RoomConnectedEnum ; + rdfs:label "closet" ; + rdfs:subClassOf nmdc:RoomConnectedEnum . -nmdc:value a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "value" ; - rdfs:range nmdc:QuantityValue ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:RoomConnectedEnum ; + rdfs:label "conference room" ; + rdfs:subClassOf nmdc:RoomConnectedEnum . -nmdc:vendor a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "vendor" ; - rdfs:range nmdc:InstrumentVendorEnum ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:RoomConnectedEnum ; + rdfs:label "elevator" ; + rdfs:subClassOf nmdc:RoomConnectedEnum . -nmdc:version a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "version" ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:RoomConnectedEnum ; + rdfs:label "examining room" ; + rdfs:subClassOf nmdc:RoomConnectedEnum . -nmdc:was_informed_by a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "was_informed_by" ; - rdfs:range nmdc:Activity ; - skos:inScheme nmdc:prov ; - skos:mappingRelation prov:wasInformedBy . + a owl:Class, + nmdc:RoomConnectedEnum ; + rdfs:label "hallway" ; + rdfs:subClassOf nmdc:RoomConnectedEnum . -nmdc:zinc a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "zinc" ; - dcterms:title "zinc" ; - rdfs:range nmdc:QuantityValue ; - rdfs:seeAlso ; - rdfs:subPropertyOf nmdc:attribute ; - skos:altLabel "zinc" ; - skos:definition "Concentration of zinc in the sample" ; - skos:inScheme nmdc:nmdc ; - nmdc:expected_value "measurement value" ; - nmdc:occurrence "1" ; - nmdc:preferred_unit "mg/kg (ppm)" . + a owl:Class, + nmdc:RoomConnectedEnum ; + rdfs:label "kitchen" ; + rdfs:subClassOf nmdc:RoomConnectedEnum . -nmdc:CollectingBiosamplesFromSite a owl:Class, - linkml:ClassDefinition ; - rdfs:label "CollectingBiosamplesFromSite" ; - dcterms:title "Collecting Biosamples From Site" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:has_output ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:Site ; - owl:onProperty nmdc:has_input ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:Biosample ; - owl:onProperty nmdc:has_output ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:has_input ], - nmdc:PlannedProcess ; - skos:closeMatch OBI:0000744 ; - skos:inScheme nmdc:nmdc ; - skos:note "this illustrates implementing a Biosample relation with a process class" . + a owl:Class, + nmdc:RoomConnectedEnum ; + rdfs:label "mail room" ; + rdfs:subClassOf nmdc:RoomConnectedEnum . - a owl:Class, - nmdc:ContainerCategoryEnum ; - rdfs:label "V-bottom conical tube" . + a owl:Class, + nmdc:RoomConnectedEnum ; + rdfs:label "office" ; + rdfs:subClassOf nmdc:RoomConnectedEnum . -nmdc:Database a owl:Class, - linkml:ClassDefinition ; - rdfs:label "Database" ; - skos:altLabel "NMDC metadata object" ; - skos:definition "An abstract holder for any set of metadata and data. It does not need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest. For MongoDB, the lists of objects that Database slots point to correspond to **collections**." ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:RoomConnectedEnum ; + rdfs:label "stairwell" ; + rdfs:subClassOf nmdc:RoomConnectedEnum . -nmdc:DissolvingActivity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "DissolvingActivity" ; - dcterms:title "Dissolving activity" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:material_input ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:material_output ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:material_input ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:material_output ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:material_output ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:material_input ] ; - skos:altLabel "dissolution-activity" ; - skos:exactMatch ; - skos:inScheme nmdc:sample_prep . + a owl:Class, + nmdc:RoomLocEnum ; + rdfs:label "corner room" ; + rdfs:subClassOf nmdc:RoomLocEnum . -nmdc:FunctionalAnnotation a owl:Class, - linkml:ClassDefinition ; - rdfs:label "FunctionalAnnotation" ; - rdfs:seeAlso , - ; - rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:has_function ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:type ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:has_function ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:was_generated_by ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:has_function ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:OntologyClass ; - owl:onProperty nmdc:type ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:was_generated_by ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:type ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:MetagenomeAnnotationActivity ; - owl:onProperty nmdc:was_generated_by ] ; - skos:definition "An assignment of a function term (e.g. reaction or pathway) that is executed by a gene product, or which the gene product plays an active role in. Functional annotations can be assigned manually by curators, or automatically in workflows. In the context of NMDC, all function annotation is performed automatically, typically using HMM or Blast type methods" ; - skos:editorialNote "move id slot usage patterns to has_function slot usage?" ; - skos:inScheme nmdc:annotation ; - skos:narrowMatch . + a owl:Class, + nmdc:RoomLocEnum ; + rdfs:label "exterior wall" ; + rdfs:subClassOf nmdc:RoomLocEnum . -nmdc:FunctionalAnnotationAggMember a owl:Class, - linkml:ClassDefinition ; - rdfs:label "FunctionalAnnotationAggMember" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:RoomLocEnum ; + rdfs:label "interior room" ; + rdfs:subClassOf nmdc:RoomLocEnum . -nmdc:GenomeFeature a owl:Class, - linkml:ClassDefinition ; - rdfs:label "GenomeFeature" ; - rdfs:seeAlso ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:end ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:type ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:seqid ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:start ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:type ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:OntologyClass ; - owl:onProperty nmdc:type ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:seqid ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:end ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:start ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:seqid ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:start ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:end ] ; - skos:definition "A feature localized to an interval along a genome" ; - skos:inScheme nmdc:annotation ; - skos:note "corresponds to an entry in GFF3" . + a owl:Class, + nmdc:RoomSampPosEnum ; + rdfs:label "center" ; + rdfs:subClassOf nmdc:RoomSampPosEnum . -nmdc:ImageValue a owl:Class, - linkml:ClassDefinition ; - rdfs:label "ImageValue" ; - rdfs:subClassOf nmdc:AttributeValue ; - skos:definition "An attribute value representing an image." ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:RoomSampPosEnum ; + rdfs:label "east corner" ; + rdfs:subClassOf nmdc:RoomSampPosEnum . -nmdc:MagBin a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MagBin" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:RoomSampPosEnum ; + rdfs:label "north corner" ; + rdfs:subClassOf nmdc:RoomSampPosEnum . -nmdc:MagsAnalysisActivity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MagsAnalysisActivity" ; - dcterms:title "Metagenome-Assembled Genome analysis activity" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - nmdc:WorkflowExecutionActivity ; - skos:definition "A workflow execution activity that uses computational binning tools to group assembled contigs into genomes" ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:RoomSampPosEnum ; + rdfs:label "northeast corner" ; + rdfs:subClassOf nmdc:RoomSampPosEnum . -nmdc:MaterialSamplingActivity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MaterialSamplingActivity" ; - dcterms:title "Material sampling activity" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:material_output ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:amount_collected ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:amount_collected ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:material_output ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:material_output ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:amount_collected ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:collected_into ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:collected_into ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:collected_into ] ; - skos:altLabel "weighing-activity" ; - skos:exactMatch OBI:0000744 ; - skos:inScheme nmdc:sample_prep . + a owl:Class, + nmdc:RoomSampPosEnum ; + rdfs:label "northwest corner" ; + rdfs:subClassOf nmdc:RoomSampPosEnum . -nmdc:MetaboliteQuantification a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MetaboliteQuantification" ; - skos:definition "This is used to link a metabolomics analysis workflow to a specific metabolite" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:RoomSampPosEnum ; + rdfs:label "south corner" ; + rdfs:subClassOf nmdc:RoomSampPosEnum . -nmdc:MetabolomicsAnalysisActivity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MetabolomicsAnalysisActivity" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - nmdc:WorkflowExecutionActivity ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:RoomSampPosEnum ; + rdfs:label "southeast corner" ; + rdfs:subClassOf nmdc:RoomSampPosEnum . -nmdc:MetagenomeAssembly a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MetagenomeAssembly" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - nmdc:WorkflowExecutionActivity ; - skos:definition "A workflow execution activity that converts sequencing reads into an assembled metagenome." ; - skos:inScheme nmdc:workflow_execution_activity ; - skos:note "instances of this class may use a de novo assembly strategy in most or all cases relevant to NMDC" . + a owl:Class, + nmdc:RoomSampPosEnum ; + rdfs:label "southwest corner" ; + rdfs:subClassOf nmdc:RoomSampPosEnum . -nmdc:MetagenomeSequencingActivity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MetagenomeSequencingActivity" ; - dcterms:title "Metagenome sequencing activity" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - nmdc:WorkflowExecutionActivity ; - skos:definition "Initial sequencing activity that precedes any analysis. This activity has output(s) that are the raw sequencing data." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:RoomSampPosEnum ; + rdfs:label "west corner" ; + rdfs:subClassOf nmdc:RoomSampPosEnum . -nmdc:MetaproteomicsAnalysisActivity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MetaproteomicsAnalysisActivity" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:used ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:used ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:used ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - nmdc:WorkflowExecutionActivity ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label ",restroom" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:MetatranscriptomeActivity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MetatranscriptomeActivity" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - nmdc:WorkflowExecutionActivity ; - skos:definition "A metatranscriptome activity that e.g. pools assembly and annotation activity." ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "attic" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:NomAnalysisActivity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "NomAnalysisActivity" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:used ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:used ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:used ], - nmdc:WorkflowExecutionActivity ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "auditorium" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:OmicsProcessing a owl:Class, - linkml:ClassDefinition ; - rdfs:label "OmicsProcessing" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:part_of ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom [ owl:intersectionOf ( nmdc:DataObject [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^nmdc:dobj-[0-9][a-z]{0,6}[0-9]-[A-Za-z0-9]{1,}(\\.[A-Za-z0-9]{1,})*(_[A-Za-z0-9_\\.-]+)?$" ] ) ] ) ] ; - owl:onProperty nmdc:has_output ], - [ a owl:Restriction ; - owl:allValuesFrom [ owl:intersectionOf ( nmdc:Study [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^nmdc:sty-[0-9][a-z]{0,6}[0-9]-[A-Za-z0-9]{1,}(\\.[A-Za-z0-9]{1,})*(_[A-Za-z0-9_\\.-]+)?$" ] ) ] ) ] ; - owl:onProperty nmdc:part_of ], - [ a owl:Restriction ; - owl:allValuesFrom [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^nmdc:(bsm|procsm)-[0-9][a-z]{0,6}[0-9]-[A-Za-z0-9]{1,}(\\.[A-Za-z0-9]{1,})*(_[A-Za-z0-9_\\.-]+)?$" ] ) ] ; - owl:onProperty nmdc:has_input ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:has_output ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:has_input ], - nmdc:PlannedProcess ; - skos:altLabel "experiment", - "omics assay", - "sequencing project" ; - skos:broadMatch ISA:Assay, - OBI:0000070 ; - skos:definition "The methods and processes used to generate omics data from a biosample or organism." ; - skos:inScheme nmdc:nmdc ; - skos:note "The ID prefix for objects coming from GOLD will be gold:Gp" . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "bathroom" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:PeptideQuantification a owl:Class, - linkml:ClassDefinition ; - rdfs:label "PeptideQuantification" ; - skos:definition "This is used to link a metaproteomics analysis workflow to a specific peptide sequence and related information" ; - skos:inScheme nmdc:core . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "cafe" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:Protocol a owl:Class, - linkml:ClassDefinition ; - rdfs:label "Protocol" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "closet" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:QualityControlReport a owl:Class, - linkml:ClassDefinition ; - rdfs:label "QualityControlReport" ; - skos:inScheme nmdc:nmdc . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "conference room" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:Reaction a owl:Class, - linkml:ClassDefinition ; - rdfs:label "Reaction" ; - rdfs:subClassOf nmdc:FunctionalAnnotationTerm ; - skos:definition "An individual biochemical transformation carried out by a functional unit of an organism, in which a collection of substrates are transformed into a collection of products. Can also represent transporters" ; - skos:exactMatch ; - skos:inScheme nmdc:annotation . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "data center" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:ReactionActivity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "ReactionActivity" ; - dcterms:title "Reaction activity" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:reaction_time ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:reaction_time ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:reaction_time ] ; - skos:altLabel "reaction-activity" ; - skos:inScheme nmdc:sample_prep . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "elevator" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:ReadBasedTaxonomyAnalysisActivity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "ReadBasedTaxonomyAnalysisActivity" ; - dcterms:title "Read based analysis activity" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - nmdc:WorkflowExecutionActivity ; - skos:definition "A workflow execution activity that performs taxonomy classification using sequencing reads" ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "examining room" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:ReadQcAnalysisActivity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "ReadQcAnalysisActivity" ; - dcterms:title "Read quality control analysis activity" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - nmdc:WorkflowExecutionActivity ; - skos:definition "A workflow execution activity that performs quality control on raw Illumina reads including quality trimming, artifact removal, linker trimming, adapter trimming, spike-in removal, and human/cat/dog/mouse/microbe contaminant removal" ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "gymnasium" ; + rdfs:subClassOf nmdc:RoomTypeEnum . - a owl:Class, - nmdc:SamplingMethodEnum ; - rdfs:label "weighing" . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "hallway" ; + rdfs:subClassOf nmdc:RoomTypeEnum . - a owl:Class, - nmdc:SeparationMethodEnum ; - rdfs:label "PTFE 96-well filter plate" . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "kitchen" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:assembly_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "assembly_identifiers" ; - skos:inScheme nmdc:external_identifiers . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "laboratory_dry" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:external_identifier a owl:Class, - linkml:TypeDefinition ; - rdfs:subClassOf linkml:Uriorcurie . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "laboratory_wet" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:gnps_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gnps_identifiers" ; - skos:inScheme nmdc:external_identifiers . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "lobby" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:igsn_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "igsn_identifiers" ; - skos:inScheme nmdc:external_identifiers . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "lockers" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:jgi_portal_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "jgi_portal_identifiers" ; - skos:definition "identifiers for entities according to JGI Portal" ; - skos:inScheme nmdc:external_identifiers . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "mail room" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -nmdc:omics_processing_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "omics_processing_identifiers" ; - rdfs:subPropertyOf nmdc:external_database_identifiers ; - skos:inScheme nmdc:external_identifiers . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "mechanical or electrical room" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -CHEBI:17790 a owl:Class, - nmdc:SolventEnum ; - rdfs:label "methanol" . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "natatorium" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -CHEBI:35255 a owl:Class, - nmdc:SolventEnum ; - rdfs:label "chloroform" . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "open office" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -OBI:0000103 a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Principal Investigator" . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "private office" ; + rdfs:subClassOf nmdc:RoomTypeEnum . -EFO:0001741 a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Submitter" . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "stairwell" ; + rdfs:subClassOf nmdc:RoomTypeEnum . - a owl:Class, - nmdc:ProcessingInstitutionEnum ; - rdfs:label "UCD_Genome_Center" . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "vestibule" ; + rdfs:subClassOf nmdc:RoomTypeEnum . - a owl:Class, - nmdc:BiosampleCategoryEnum ; - rdfs:label "FICUS" . + a owl:Class, + nmdc:RoomTypeEnum ; + rdfs:label "warehouse" ; + rdfs:subClassOf nmdc:RoomTypeEnum . - a owl:Class, - nmdc:BiosampleCategoryEnum ; - rdfs:label "LTER" . + a owl:Class, + nmdc:SampCaptStatusEnum ; + rdfs:label "active surveillance in response to an outbreak" ; + rdfs:subClassOf nmdc:SampCaptStatusEnum . - a owl:Class, - nmdc:ProcessingInstitutionEnum ; - rdfs:label "UCSD" . + a owl:Class, + nmdc:SampCaptStatusEnum ; + rdfs:label "active surveillance not initiated by an outbreak" ; + rdfs:subClassOf nmdc:SampCaptStatusEnum . - a owl:Class, - nmdc:ProcessingInstitutionEnum ; - rdfs:label "Battelle" . + a owl:Class, + nmdc:SampCaptStatusEnum ; + rdfs:label "farm sample" ; + rdfs:subClassOf nmdc:SampCaptStatusEnum . - a owl:Class, - nmdc:DoiProviderEnum ; - rdfs:label "ess_dive" . + a owl:Class, + nmdc:SampCaptStatusEnum ; + rdfs:label "market sample" ; + rdfs:subClassOf nmdc:SampCaptStatusEnum . - a owl:Class, - nmdc:DoiProviderEnum ; - rdfs:label "kbase" . + a owl:Class, + nmdc:SampCaptStatusEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:SampCaptStatusEnum . - a owl:Class, - nmdc:DoiProviderEnum ; - rdfs:label "osti" . + a owl:Class, + nmdc:SampCollectPointEnum ; + rdfs:label "drilling rig" ; + rdfs:subClassOf nmdc:SampCollectPointEnum . - a owl:Class, - nmdc:DoiProviderEnum ; - rdfs:label "edi" . + a owl:Class, + nmdc:SampCollectPointEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:SampCollectPointEnum . - a owl:Class, - nmdc:ProcessingInstitutionEnum ; - rdfs:label "ANL" . + a owl:Class, + nmdc:SampCollectPointEnum ; + rdfs:label "separator" ; + rdfs:subClassOf nmdc:SampCollectPointEnum . - a owl:Class, - nmdc:BiosampleCategoryEnum ; - rdfs:label "SFA" . + a owl:Class, + nmdc:SampCollectPointEnum ; + rdfs:label "storage tank" ; + rdfs:subClassOf nmdc:SampCollectPointEnum . - a owl:Class, - nmdc:AnalysisTypeEnum ; - rdfs:label "metabolomics" . + a owl:Class, + nmdc:SampCollectPointEnum ; + rdfs:label "test well" ; + rdfs:subClassOf nmdc:SampCollectPointEnum . - a owl:Class, - nmdc:AnalysisTypeEnum ; - rdfs:label "metagenomics" . + a owl:Class, + nmdc:SampCollectPointEnum ; + rdfs:label "well" ; + rdfs:subClassOf nmdc:SampCollectPointEnum . - a owl:Class, - nmdc:AnalysisTypeEnum ; - rdfs:label "metaproteomics" . + a owl:Class, + nmdc:SampCollectPointEnum ; + rdfs:label "wellhead" ; + rdfs:subClassOf nmdc:SampCollectPointEnum . - a owl:Class, - nmdc:AnalysisTypeEnum ; - rdfs:label "metatranscriptomics" . + a owl:Class, + nmdc:SampDisStageEnum ; + rdfs:label "dissemination" ; + rdfs:subClassOf nmdc:SampDisStageEnum . - a owl:Class, - nmdc:AnalysisTypeEnum ; - rdfs:label "natural organic matter" . + a owl:Class, + nmdc:SampDisStageEnum ; + rdfs:label "growth and reproduction" ; + rdfs:subClassOf nmdc:SampDisStageEnum . - a owl:Class, - nmdc:ArchStrucEnum ; - rdfs:label "building" . + a owl:Class, + nmdc:SampDisStageEnum ; + rdfs:label "infection" ; + rdfs:subClassOf nmdc:SampDisStageEnum . - a owl:Class, - nmdc:ArchStrucEnum ; - rdfs:label "home" . + a owl:Class, + nmdc:SampDisStageEnum ; + rdfs:label "inoculation" ; + rdfs:subClassOf nmdc:SampDisStageEnum . - a owl:Class, - nmdc:ArchStrucEnum ; - rdfs:label "shed" . + a owl:Class, + nmdc:SampDisStageEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:SampDisStageEnum . - a owl:Class, - nmdc:BiolStatEnum ; - rdfs:label "breeder's line" . + a owl:Class, + nmdc:SampDisStageEnum ; + rdfs:label "penetration" ; + rdfs:subClassOf nmdc:SampDisStageEnum . - a owl:Class, - nmdc:BiolStatEnum ; - rdfs:label "clonal selection" . + a owl:Class, + nmdc:SampFloorEnum ; + rdfs:label "1st floor" ; + rdfs:subClassOf nmdc:SampFloorEnum . - a owl:Class, - nmdc:BiolStatEnum ; - rdfs:label "hybrid" . - - a owl:Class, - nmdc:BiolStatEnum ; - rdfs:label "inbred line" . + a owl:Class, + nmdc:SampFloorEnum ; + rdfs:label "2nd floor" ; + rdfs:subClassOf nmdc:SampFloorEnum . - a owl:Class, - nmdc:BiolStatEnum ; - rdfs:label "mutant" . + a owl:Class, + nmdc:SampFloorEnum ; + rdfs:label "basement" ; + rdfs:subClassOf nmdc:SampFloorEnum . - a owl:Class, - nmdc:BiolStatEnum ; - rdfs:label "natural" . + a owl:Class, + nmdc:SampFloorEnum ; + rdfs:label "lobby" ; + rdfs:subClassOf nmdc:SampFloorEnum . - a owl:Class, - nmdc:BiolStatEnum ; - rdfs:label "semi-natural" . + a owl:Class, + nmdc:SampMdEnum ; + rdfs:label "DF" ; + rdfs:subClassOf nmdc:SampMdEnum . - a owl:Class, - nmdc:BiolStatEnum ; - rdfs:label "wild" . + a owl:Class, + nmdc:SampMdEnum ; + rdfs:label "KB" ; + rdfs:subClassOf nmdc:SampMdEnum . - a owl:Class, - nmdc:BiosampleCategoryEnum ; - rdfs:label "SIP" . + a owl:Class, + nmdc:SampMdEnum ; + rdfs:label "MSL" ; + rdfs:subClassOf nmdc:SampMdEnum . - a owl:Class, - nmdc:BioticRelationshipEnum ; - rdfs:label "commensal" . + a owl:Class, + nmdc:SampMdEnum ; + rdfs:label "RT" ; + rdfs:subClassOf nmdc:SampMdEnum . - a owl:Class, - nmdc:BioticRelationshipEnum ; - rdfs:label "free living" . + a owl:Class, + nmdc:SampMdEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:SampMdEnum . - a owl:Class, - nmdc:BioticRelationshipEnum ; - rdfs:label "parasite" . + a owl:Class, + nmdc:SampSubtypeEnum ; + rdfs:label "biofilm" ; + rdfs:subClassOf nmdc:SampSubtypeEnum . - a owl:Class, - nmdc:BioticRelationshipEnum ; - rdfs:label "symbiont" . + a owl:Class, + nmdc:SampSubtypeEnum ; + rdfs:label "not applicable" ; + rdfs:subClassOf nmdc:SampSubtypeEnum . - a owl:Class, - nmdc:BuildDocsEnum ; - rdfs:label "building information model" . + a owl:Class, + nmdc:SampSubtypeEnum ; + rdfs:label "oil phase" ; + rdfs:subClassOf nmdc:SampSubtypeEnum . - a owl:Class, - nmdc:BuildDocsEnum ; - rdfs:label "commissioning report" . + a owl:Class, + nmdc:SampSubtypeEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:SampSubtypeEnum . - a owl:Class, - nmdc:BuildDocsEnum ; - rdfs:label "complaint logs" . + a owl:Class, + nmdc:SampSubtypeEnum ; + rdfs:label "water phase" ; + rdfs:subClassOf nmdc:SampSubtypeEnum . - a owl:Class, - nmdc:BuildDocsEnum ; - rdfs:label "contract administration" . + a owl:Class, + nmdc:SampWeatherEnum ; + rdfs:label "clear sky" ; + rdfs:subClassOf nmdc:SampWeatherEnum . - a owl:Class, - nmdc:BuildDocsEnum ; - rdfs:label "cost estimate" . + a owl:Class, + nmdc:SampWeatherEnum ; + rdfs:label "cloudy" ; + rdfs:subClassOf nmdc:SampWeatherEnum . - a owl:Class, - nmdc:BuildDocsEnum ; - rdfs:label "janitorial schedules or logs" . + a owl:Class, + nmdc:SampWeatherEnum ; + rdfs:label "foggy" ; + rdfs:subClassOf nmdc:SampWeatherEnum . - a owl:Class, - nmdc:BuildDocsEnum ; - rdfs:label "maintenance plans" . + a owl:Class, + nmdc:SampWeatherEnum ; + rdfs:label "hail" ; + rdfs:subClassOf nmdc:SampWeatherEnum . - a owl:Class, - nmdc:BuildDocsEnum ; - rdfs:label "schedule" . + a owl:Class, + nmdc:SampWeatherEnum ; + rdfs:label "rain" ; + rdfs:subClassOf nmdc:SampWeatherEnum . - a owl:Class, - nmdc:BuildDocsEnum ; - rdfs:label "sections" . + a owl:Class, + nmdc:SampWeatherEnum ; + rdfs:label "sleet" ; + rdfs:subClassOf nmdc:SampWeatherEnum . - a owl:Class, - nmdc:BuildDocsEnum ; - rdfs:label "shop drawings" . + a owl:Class, + nmdc:SampWeatherEnum ; + rdfs:label "snow" ; + rdfs:subClassOf nmdc:SampWeatherEnum . - a owl:Class, - nmdc:BuildDocsEnum ; - rdfs:label "submittals" . + a owl:Class, + nmdc:SampWeatherEnum ; + rdfs:label "sunny" ; + rdfs:subClassOf nmdc:SampWeatherEnum . - a owl:Class, - nmdc:BuildDocsEnum ; - rdfs:label "ventilation system" . + a owl:Class, + nmdc:SampWeatherEnum ; + rdfs:label "windy" ; + rdfs:subClassOf nmdc:SampWeatherEnum . - a owl:Class, - nmdc:BuildDocsEnum ; - rdfs:label "windows" . + a owl:Class, + nmdc:SampleTypeEnum ; + rdfs:label "soil" ; + rdfs:subClassOf nmdc:SampleTypeEnum . - a owl:Class, - nmdc:BuildOccupTypeEnum ; - rdfs:label "airport" . + a owl:Class, + nmdc:SampleTypeEnum ; + rdfs:label "water_extract_soil" ; + rdfs:subClassOf nmdc:SampleTypeEnum . - a owl:Class, - nmdc:BuildOccupTypeEnum ; - rdfs:label "commercial" . + a owl:Class, + nmdc:SeasonUseEnum ; + rdfs:label "Fall" ; + rdfs:subClassOf nmdc:SeasonUseEnum . - a owl:Class, - nmdc:BuildOccupTypeEnum ; - rdfs:label "health care" . + a owl:Class, + nmdc:SeasonUseEnum ; + rdfs:label "Spring" ; + rdfs:subClassOf nmdc:SeasonUseEnum . - a owl:Class, - nmdc:BuildOccupTypeEnum ; - rdfs:label "high rise" . + a owl:Class, + nmdc:SeasonUseEnum ; + rdfs:label "Summer" ; + rdfs:subClassOf nmdc:SeasonUseEnum . - a owl:Class, - nmdc:BuildOccupTypeEnum ; - rdfs:label "low rise" . + a owl:Class, + nmdc:SeasonUseEnum ; + rdfs:label "Winter" ; + rdfs:subClassOf nmdc:SeasonUseEnum . - a owl:Class, - nmdc:BuildOccupTypeEnum ; - rdfs:label "market" . + a owl:Class, + nmdc:SedimentTypeEnum ; + rdfs:label "biogenous" ; + rdfs:subClassOf nmdc:SedimentTypeEnum . - a owl:Class, - nmdc:BuildOccupTypeEnum ; - rdfs:label "office" . + a owl:Class, + nmdc:SedimentTypeEnum ; + rdfs:label "cosmogenous" ; + rdfs:subClassOf nmdc:SedimentTypeEnum . - a owl:Class, - nmdc:BuildOccupTypeEnum ; - rdfs:label "residence" . + a owl:Class, + nmdc:SedimentTypeEnum ; + rdfs:label "hydrogenous" ; + rdfs:subClassOf nmdc:SedimentTypeEnum . - a owl:Class, - nmdc:BuildOccupTypeEnum ; - rdfs:label "residential" . + a owl:Class, + nmdc:SedimentTypeEnum ; + rdfs:label "lithogenous" ; + rdfs:subClassOf nmdc:SedimentTypeEnum . - a owl:Class, - nmdc:BuildOccupTypeEnum ; - rdfs:label "restaurant" . + a owl:Class, + nmdc:ShadingDeviceCondEnum ; + rdfs:label "damaged" ; + rdfs:subClassOf nmdc:ShadingDeviceCondEnum . - a owl:Class, - nmdc:BuildOccupTypeEnum ; - rdfs:label "school" . + a owl:Class, + nmdc:ShadingDeviceCondEnum ; + rdfs:label "needs repair" ; + rdfs:subClassOf nmdc:ShadingDeviceCondEnum . - a owl:Class, - nmdc:BuildOccupTypeEnum ; - rdfs:label "sports complex" . + a owl:Class, + nmdc:ShadingDeviceCondEnum ; + rdfs:label "new" ; + rdfs:subClassOf nmdc:ShadingDeviceCondEnum . - a owl:Class, - nmdc:BuildOccupTypeEnum ; - rdfs:label "wood framed" . + a owl:Class, + nmdc:ShadingDeviceCondEnum ; + rdfs:label "rupture" ; + rdfs:subClassOf nmdc:ShadingDeviceCondEnum . - a owl:Class, - nmdc:BuildingSettingEnum ; - rdfs:label "exurban" . + a owl:Class, + nmdc:ShadingDeviceCondEnum ; + rdfs:label "visible wear" ; + rdfs:subClassOf nmdc:ShadingDeviceCondEnum . - a owl:Class, - nmdc:BuildingSettingEnum ; - rdfs:label "rural" . + a owl:Class, + nmdc:ShadingDeviceTypeEnum ; + rdfs:label "bahama shutters" ; + rdfs:subClassOf nmdc:ShadingDeviceTypeEnum . - a owl:Class, - nmdc:BuildingSettingEnum ; - rdfs:label "suburban" . + a owl:Class, + nmdc:ShadingDeviceTypeEnum ; + rdfs:label "exterior roll blind" ; + rdfs:subClassOf nmdc:ShadingDeviceTypeEnum . - a owl:Class, - nmdc:BuildingSettingEnum ; - rdfs:label "urban" . + a owl:Class, + nmdc:ShadingDeviceTypeEnum ; + rdfs:label "gambrel awning" ; + rdfs:subClassOf nmdc:ShadingDeviceTypeEnum . - a owl:Class, - nmdc:CeilCondEnum ; - rdfs:label "damaged" . + a owl:Class, + nmdc:ShadingDeviceTypeEnum ; + rdfs:label "hood awning" ; + rdfs:subClassOf nmdc:ShadingDeviceTypeEnum . - a owl:Class, - nmdc:CeilCondEnum ; - rdfs:label "needs repair" . + a owl:Class, + nmdc:ShadingDeviceTypeEnum ; + rdfs:label "porchroller awning" ; + rdfs:subClassOf nmdc:ShadingDeviceTypeEnum . - a owl:Class, - nmdc:CeilCondEnum ; - rdfs:label "new" . + a owl:Class, + nmdc:ShadingDeviceTypeEnum ; + rdfs:label "sarasota shutters" ; + rdfs:subClassOf nmdc:ShadingDeviceTypeEnum . - a owl:Class, - nmdc:CeilCondEnum ; - rdfs:label "rupture" . + a owl:Class, + nmdc:ShadingDeviceTypeEnum ; + rdfs:label "slatted aluminum" ; + rdfs:subClassOf nmdc:ShadingDeviceTypeEnum . - a owl:Class, - nmdc:CeilCondEnum ; - rdfs:label "visible wear" . + a owl:Class, + nmdc:ShadingDeviceTypeEnum ; + rdfs:label "solid aluminum awning" ; + rdfs:subClassOf nmdc:ShadingDeviceTypeEnum . - a owl:Class, - nmdc:CeilFinishMatEnum ; - rdfs:label "PVC" . + a owl:Class, + nmdc:ShadingDeviceTypeEnum ; + rdfs:label "sun screen" ; + rdfs:subClassOf nmdc:ShadingDeviceTypeEnum . - a owl:Class, - nmdc:CeilFinishMatEnum ; - rdfs:label "drywall" . + a owl:Class, + nmdc:ShadingDeviceTypeEnum ; + rdfs:label "tree" ; + rdfs:subClassOf nmdc:ShadingDeviceTypeEnum . - a owl:Class, - nmdc:CeilFinishMatEnum ; - rdfs:label "fiberglass" . + a owl:Class, + nmdc:ShadingDeviceTypeEnum ; + rdfs:label "trellis" ; + rdfs:subClassOf nmdc:ShadingDeviceTypeEnum . - a owl:Class, - nmdc:CeilFinishMatEnum ; - rdfs:label "metal" . + a owl:Class, + nmdc:ShadingDeviceTypeEnum ; + rdfs:label "venetian awning" ; + rdfs:subClassOf nmdc:ShadingDeviceTypeEnum . - a owl:Class, - nmdc:CeilFinishMatEnum ; - rdfs:label "mineral fibre" . +nmdc:Site a owl:Class, + linkml:ClassDefinition ; + rdfs:label "Site" ; + dcterms:title "Site" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + nmdc:MaterialEntity ; + skos:inScheme nmdc:core ; + skos:note "BCO sample collection site ?" . - a owl:Class, - nmdc:CeilFinishMatEnum ; - rdfs:label "mineral wool/calcium silicate" . + a owl:Class, + nmdc:SoilHorizonEnum ; + rdfs:label "A horizon" ; + rdfs:subClassOf nmdc:SoilHorizonEnum . - a owl:Class, - nmdc:CeilFinishMatEnum ; - rdfs:label "plasterboard" . + a owl:Class, + nmdc:SoilHorizonEnum ; + rdfs:label "B horizon" ; + rdfs:subClassOf nmdc:SoilHorizonEnum . - a owl:Class, - nmdc:CeilFinishMatEnum ; - rdfs:label "stucco" . + a owl:Class, + nmdc:SoilHorizonEnum ; + rdfs:label "C horizon" ; + rdfs:subClassOf nmdc:SoilHorizonEnum . - a owl:Class, - nmdc:CeilFinishMatEnum ; - rdfs:label "tiles" . + a owl:Class, + nmdc:SoilHorizonEnum ; + rdfs:label "E horizon" ; + rdfs:subClassOf nmdc:SoilHorizonEnum . - a owl:Class, - nmdc:CeilFinishMatEnum ; - rdfs:label "wood" . + a owl:Class, + nmdc:SoilHorizonEnum ; + rdfs:label "M horizon" ; + rdfs:subClassOf nmdc:SoilHorizonEnum . - a owl:Class, - nmdc:CeilTextureEnum ; - rdfs:label "Santa-Fe texture" . + a owl:Class, + nmdc:SoilHorizonEnum ; + rdfs:label "O horizon" ; + rdfs:subClassOf nmdc:SoilHorizonEnum . - a owl:Class, - nmdc:CeilTextureEnum ; - rdfs:label "crows feet" . + a owl:Class, + nmdc:SoilHorizonEnum ; + rdfs:label "Permafrost" ; + rdfs:subClassOf nmdc:SoilHorizonEnum . - a owl:Class, - nmdc:CeilTextureEnum ; - rdfs:label "crows-foot stomp" . + a owl:Class, + nmdc:SoilHorizonEnum ; + rdfs:label "R layer" ; + rdfs:subClassOf nmdc:SoilHorizonEnum . - a owl:Class, - nmdc:CeilTextureEnum ; - rdfs:label "double skip" . + a owl:Class, + nmdc:SolventEnum ; + rdfs:label "deionized_water" ; + rdfs:subClassOf nmdc:SolventEnum . - a owl:Class, - nmdc:CeilTextureEnum ; - rdfs:label "hawk and trowel" . + a owl:Class, + nmdc:SpecificEnum ; + rdfs:label "as built" ; + rdfs:subClassOf nmdc:SpecificEnum . - a owl:Class, - nmdc:CeilTextureEnum ; - rdfs:label "knockdown" . + a owl:Class, + nmdc:SpecificEnum ; + rdfs:label "bid" ; + rdfs:subClassOf nmdc:SpecificEnum . - a owl:Class, - nmdc:CeilTextureEnum ; - rdfs:label "orange peel" . + a owl:Class, + nmdc:SpecificEnum ; + rdfs:label "construction" ; + rdfs:subClassOf nmdc:SpecificEnum . - a owl:Class, - nmdc:CeilTextureEnum ; - rdfs:label "popcorn" . + a owl:Class, + nmdc:SpecificEnum ; + rdfs:label "design" ; + rdfs:subClassOf nmdc:SpecificEnum . - a owl:Class, - nmdc:CeilTextureEnum ; - rdfs:label "rosebud stomp" . + a owl:Class, + nmdc:SpecificEnum ; + rdfs:label "operation" ; + rdfs:subClassOf nmdc:SpecificEnum . - a owl:Class, - nmdc:CeilTextureEnum ; - rdfs:label "skip trowel" . + a owl:Class, + nmdc:SpecificEnum ; + rdfs:label "photos" ; + rdfs:subClassOf nmdc:SpecificEnum . - a owl:Class, - nmdc:CeilTextureEnum ; - rdfs:label "smooth" . + a owl:Class, + nmdc:SrDepEnvEnum ; + rdfs:label "Fluvioldeltaic" ; + rdfs:subClassOf nmdc:SrDepEnvEnum . - a owl:Class, - nmdc:CeilTextureEnum ; - rdfs:label "stomp knockdown" . + a owl:Class, + nmdc:SrDepEnvEnum ; + rdfs:label "Fluviomarine" ; + rdfs:subClassOf nmdc:SrDepEnvEnum . - a owl:Class, - nmdc:CeilTextureEnum ; - rdfs:label "swirl" . + a owl:Class, + nmdc:SrDepEnvEnum ; + rdfs:label "Lacustine" ; + rdfs:subClassOf nmdc:SrDepEnvEnum . - a owl:Class, - nmdc:CeilTypeEnum ; - rdfs:label "barrel-shaped" . + a owl:Class, + nmdc:SrDepEnvEnum ; + rdfs:label "Marine" ; + rdfs:subClassOf nmdc:SrDepEnvEnum . - a owl:Class, - nmdc:CeilTypeEnum ; - rdfs:label "cathedral" . + a owl:Class, + nmdc:SrDepEnvEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:SrDepEnvEnum . - a owl:Class, - nmdc:CeilTypeEnum ; - rdfs:label "coffered" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Archean" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CeilTypeEnum ; - rdfs:label "concave" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Cambrian" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CeilTypeEnum ; - rdfs:label "cove" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Carboniferous" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CeilTypeEnum ; - rdfs:label "dropped" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Cenozoic" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CeilTypeEnum ; - rdfs:label "stretched" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Cretaceous" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . -nmdc:ChemicalEntity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "ChemicalEntity" ; - rdfs:seeAlso ; - rdfs:subClassOf nmdc:OntologyClass ; - skos:altLabel "chemical", - "chemical compound", - "chemical substance", - "metabolite" ; - skos:definition "An atom or molecule that can be represented with a chemical formula. Include lipids, glycans, natural products, drugs. There may be different terms for distinct acid-base forms, protonation states" ; - skos:exactMatch ; - skos:inScheme nmdc:core ; - skos:note "As with the parent OntologyClass, we will not assign an nmdc id pattern or typecode to this class." . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Devonian" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . -nmdc:ContainerCategoryEnum a owl:Class, - linkml:EnumDefinition ; - linkml:permissible_values . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Jurassic" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Conceptualization" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Mesozoic" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Data curation" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Neogene" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Formal Analysis" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Ordovician" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Funding acquisition" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Paleogene" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Investigation" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Paleozoic" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Methodology" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Permian" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Project administration" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Precambrian" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Resources" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Proterozoic" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Software" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Silurian" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Supervision" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "Triassic" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Validation" . + a owl:Class, + nmdc:SrGeolAgeEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:SrGeolAgeEnum . - a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Visualization" . + a owl:Class, + nmdc:SrKerogTypeEnum ; + rdfs:label "Type I" ; + rdfs:subClassOf nmdc:SrKerogTypeEnum . - a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Writing original draft" . + a owl:Class, + nmdc:SrKerogTypeEnum ; + rdfs:label "Type II" ; + rdfs:subClassOf nmdc:SrKerogTypeEnum . - a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Writing review and editing" . + a owl:Class, + nmdc:SrKerogTypeEnum ; + rdfs:label "Type III" ; + rdfs:subClassOf nmdc:SrKerogTypeEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "badlands" . + a owl:Class, + nmdc:SrKerogTypeEnum ; + rdfs:label "Type IV" ; + rdfs:subClassOf nmdc:SrKerogTypeEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "cities" . + a owl:Class, + nmdc:SrKerogTypeEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:SrKerogTypeEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "conifers" . + a owl:Class, + nmdc:SrLithologyEnum ; + rdfs:label "Biosilicieous" ; + rdfs:subClassOf nmdc:SrLithologyEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "crop trees" . + a owl:Class, + nmdc:SrLithologyEnum ; + rdfs:label "Carbonate" ; + rdfs:subClassOf nmdc:SrLithologyEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "farmstead" . + a owl:Class, + nmdc:SrLithologyEnum ; + rdfs:label "Clastic" ; + rdfs:subClassOf nmdc:SrLithologyEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "gravel" . + a owl:Class, + nmdc:SrLithologyEnum ; + rdfs:label "Coal" ; + rdfs:subClassOf nmdc:SrLithologyEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "hardwoods" . + a owl:Class, + nmdc:SrLithologyEnum ; + rdfs:label "other" ; + rdfs:subClassOf nmdc:SrLithologyEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "hayland" . + a owl:Class, + nmdc:StatusEnum ; + rdfs:label "fail" ; + rdfs:subClassOf nmdc:StatusEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "horticultural plants" . + a owl:Class, + nmdc:StatusEnum ; + rdfs:label "pass" ; + rdfs:subClassOf nmdc:StatusEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "industrial areas" . + a owl:Class, + nmdc:StudyCategoryEnum ; + rdfs:label "consortium" ; + rdfs:subClassOf nmdc:StudyCategoryEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "intermixed hardwood and conifers" . + a owl:Class, + nmdc:StudyCategoryEnum ; + rdfs:label "research_study" ; + rdfs:subClassOf nmdc:StudyCategoryEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "marshlands" . +nmdc:SubSamplingProcess a owl:Class, + linkml:ClassDefinition ; + rdfs:label "SubSamplingProcess" ; + dcterms:contributor ORCID:0000-0001-9076-6066, + ORCID:0000-0002-8683-0050, + ORCID:0009-0001-1555-1601, + ORCID:0009-0008-4013-7737 ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:mass ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:contained_in ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ProcessedSample ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ContainerCategoryEnum ; + owl:onProperty nmdc:contained_in ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:container_size ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:volume ], + [ a owl:Restriction ; + owl:allValuesFrom [ owl:unionOf ( nmdc:Biosample nmdc:ProcessedSample ) ] ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:temperature ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:mass ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:volume ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty nmdc:temperature ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:volume ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:contained_in ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:temperature ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:container_size ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty nmdc:container_size ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:mass ], + nmdc:PlannedProcess ; + skos:definition """Separating a sample aliquot from the starting material for downstream activity. +""" ; + skos:editorialNote "A subsample may be (a) a portion of the sample obtained by selection or division; (b) an individual unit of the lot taken as part of the sample; (c) the final unit of multistage sampling. The term 'subsample' is used either in the sense of a 'sample of a sample' or as a synonym for 'unit'. In practice, the meaning is usually apparent from the context or is defined." ; + skos:inScheme nmdc:nmdc ; + skos:relatedMatch OBI:0000744 . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "meadows" . + a owl:Class, + nmdc:SubstructureTypeEnum ; + rdfs:label "basement" ; + rdfs:subClassOf nmdc:SubstructureTypeEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "mines/quarries" . + a owl:Class, + nmdc:SubstructureTypeEnum ; + rdfs:label "crawlspace" ; + rdfs:subClassOf nmdc:SubstructureTypeEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "mudflats" . + a owl:Class, + nmdc:SubstructureTypeEnum ; + rdfs:label "slab on grade" ; + rdfs:subClassOf nmdc:SubstructureTypeEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "oil waste areas" . + a owl:Class, + nmdc:SurfAirContEnum ; + rdfs:label "biocides" ; + rdfs:subClassOf nmdc:SurfAirContEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "pastureland" . + a owl:Class, + nmdc:SurfAirContEnum ; + rdfs:label "biological contaminants" ; + rdfs:subClassOf nmdc:SurfAirContEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "permanent snow or ice" . + a owl:Class, + nmdc:SurfAirContEnum ; + rdfs:label "dust" ; + rdfs:subClassOf nmdc:SurfAirContEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "rainforest" . + a owl:Class, + nmdc:SurfAirContEnum ; + rdfs:label "nutrients" ; + rdfs:subClassOf nmdc:SurfAirContEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "rangeland" . + a owl:Class, + nmdc:SurfAirContEnum ; + rdfs:label "organic matter" ; + rdfs:subClassOf nmdc:SurfAirContEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "roads/railroads" . + a owl:Class, + nmdc:SurfAirContEnum ; + rdfs:label "particulate matter" ; + rdfs:subClassOf nmdc:SurfAirContEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "rock" . + a owl:Class, + nmdc:SurfAirContEnum ; + rdfs:label "radon" ; + rdfs:subClassOf nmdc:SurfAirContEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "row crops" . + a owl:Class, + nmdc:SurfAirContEnum ; + rdfs:label "volatile organic compounds" ; + rdfs:subClassOf nmdc:SurfAirContEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "saline seeps" . + a owl:Class, + nmdc:SurfMaterialEnum ; + rdfs:label "adobe" ; + rdfs:subClassOf nmdc:SurfMaterialEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "salt flats" . + a owl:Class, + nmdc:SurfMaterialEnum ; + rdfs:label "carpet" ; + rdfs:subClassOf nmdc:SurfMaterialEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "sand" . + a owl:Class, + nmdc:SurfMaterialEnum ; + rdfs:label "cinder blocks" ; + rdfs:subClassOf nmdc:SurfMaterialEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "shrub crops" . + a owl:Class, + nmdc:SurfMaterialEnum ; + rdfs:label "concrete" ; + rdfs:subClassOf nmdc:SurfMaterialEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "shrub land" . + a owl:Class, + nmdc:SurfMaterialEnum ; + rdfs:label "glass" ; + rdfs:subClassOf nmdc:SurfMaterialEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "small grains" . + a owl:Class, + nmdc:SurfMaterialEnum ; + rdfs:label "hay bales" ; + rdfs:subClassOf nmdc:SurfMaterialEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "successional shrub land" . + a owl:Class, + nmdc:SurfMaterialEnum ; + rdfs:label "metal" ; + rdfs:subClassOf nmdc:SurfMaterialEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "swamp" . + a owl:Class, + nmdc:SurfMaterialEnum ; + rdfs:label "paint" ; + rdfs:subClassOf nmdc:SurfMaterialEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "tropical" . + a owl:Class, + nmdc:SurfMaterialEnum ; + rdfs:label "plastic" ; + rdfs:subClassOf nmdc:SurfMaterialEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "tundra" . + a owl:Class, + nmdc:SurfMaterialEnum ; + rdfs:label "stainless steel" ; + rdfs:subClassOf nmdc:SurfMaterialEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "vegetable crops" . + a owl:Class, + nmdc:SurfMaterialEnum ; + rdfs:label "stone" ; + rdfs:subClassOf nmdc:SurfMaterialEnum . - a owl:Class, - nmdc:CurLandUseEnum ; - rdfs:label "vine crops" . + a owl:Class, + nmdc:SurfMaterialEnum ; + rdfs:label "stucco" ; + rdfs:subClassOf nmdc:SurfMaterialEnum . -nmdc:DataObject a owl:Class, - linkml:ClassDefinition ; - rdfs:label "DataObject" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:description ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:description ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:name ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:name ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:description ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:name ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - nmdc:NamedThing ; - skos:definition "An object that primarily consists of symbols that represent information. Files, records, and omics data are examples of data objects." ; - skos:editorialNote "removed previous id_prefixes value of GOLD, since we are now using pattern-based id validation" ; - skos:inScheme nmdc:nmdc ; - skos:note "removed id_prefixes value of GOLD, since we are now using pattern-based id validation" . + a owl:Class, + nmdc:SurfMaterialEnum ; + rdfs:label "tile" ; + rdfs:subClassOf nmdc:SurfMaterialEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "Continental - Aeolian" . + a owl:Class, + nmdc:SurfMaterialEnum ; + rdfs:label "vinyl" ; + rdfs:subClassOf nmdc:SurfMaterialEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "Continental - Alluvial" . + a owl:Class, + nmdc:SurfMaterialEnum ; + rdfs:label "wood" ; + rdfs:subClassOf nmdc:SurfMaterialEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "Continental - Fluvial" . + a owl:Class, + nmdc:TidalStageEnum ; + rdfs:label "ebb tide" ; + rdfs:subClassOf nmdc:TidalStageEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "Continental - Lacustrine" . + a owl:Class, + nmdc:TidalStageEnum ; + rdfs:label "flood tide" ; + rdfs:subClassOf nmdc:TidalStageEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "Marine - Deep" . + a owl:Class, + nmdc:TidalStageEnum ; + rdfs:label "high tide" ; + rdfs:subClassOf nmdc:TidalStageEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "Marine - Reef" . + a owl:Class, + nmdc:TidalStageEnum ; + rdfs:label "low tide" ; + rdfs:subClassOf nmdc:TidalStageEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "Marine - Shallow" . + a owl:Class, + nmdc:TillageEnum ; + rdfs:label "chisel" ; + rdfs:subClassOf nmdc:TillageEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "Other - Evaporite" . + a owl:Class, + nmdc:TillageEnum ; + rdfs:label "cutting disc" ; + rdfs:subClassOf nmdc:TillageEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "Other - Glacial" . + a owl:Class, + nmdc:TillageEnum ; + rdfs:label "disc plough" ; + rdfs:subClassOf nmdc:TillageEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "Other - Volcanic" . + a owl:Class, + nmdc:TillageEnum ; + rdfs:label "drill" ; + rdfs:subClassOf nmdc:TillageEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "Transitional - Beach" . + a owl:Class, + nmdc:TillageEnum ; + rdfs:label "mouldboard" ; + rdfs:subClassOf nmdc:TillageEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "Transitional - Deltaic" . + a owl:Class, + nmdc:TillageEnum ; + rdfs:label "ridge till" ; + rdfs:subClassOf nmdc:TillageEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "Transitional - Lagoonal" . + a owl:Class, + nmdc:TillageEnum ; + rdfs:label "strip tillage" ; + rdfs:subClassOf nmdc:TillageEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "Transitional - Lake" . + a owl:Class, + nmdc:TillageEnum ; + rdfs:label "tined" ; + rdfs:subClassOf nmdc:TillageEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "Transitional - Tidal" . + a owl:Class, + nmdc:TillageEnum ; + rdfs:label "zonal tillage" ; + rdfs:subClassOf nmdc:TillageEnum . - a owl:Class, - nmdc:DeposEnvEnum ; - rdfs:label "other" . + a owl:Class, + nmdc:TrainLineEnum ; + rdfs:label "green" ; + rdfs:subClassOf nmdc:TrainLineEnum . - a owl:Class, - nmdc:DeviceEnum ; - rdfs:label "Agitation plunger" . + a owl:Class, + nmdc:TrainLineEnum ; + rdfs:label "orange" ; + rdfs:subClassOf nmdc:TrainLineEnum . - a owl:Class, - nmdc:DeviceEnum ; - rdfs:label "CEREX System 96 processor" . + a owl:Class, + nmdc:TrainLineEnum ; + rdfs:label "red" ; + rdfs:subClassOf nmdc:TrainLineEnum . - a owl:Class, - nmdc:DeviceEnum ; - rdfs:label "Drying oven" . + a owl:Class, + nmdc:TrainStatLocEnum ; + rdfs:label "forest hills" ; + rdfs:subClassOf nmdc:TrainStatLocEnum . - a owl:Class, - nmdc:DeviceEnum ; - rdfs:label "Orbital Shaker" . + a owl:Class, + nmdc:TrainStatLocEnum ; + rdfs:label "riverside" ; + rdfs:subClassOf nmdc:TrainStatLocEnum . - a owl:Class, - nmdc:DeviceEnum ; - rdfs:label "Thermomixer" . + a owl:Class, + nmdc:TrainStatLocEnum ; + rdfs:label "south station above ground" ; + rdfs:subClassOf nmdc:TrainStatLocEnum . - a owl:Class, - nmdc:DeviceEnum ; - rdfs:label "Vortex" . + a owl:Class, + nmdc:TrainStatLocEnum ; + rdfs:label "south station amtrak" ; + rdfs:subClassOf nmdc:TrainStatLocEnum . - a owl:Class, - nmdc:DeviceTypeEnum ; - rdfs:label "orbital_shaker" . + a owl:Class, + nmdc:TrainStatLocEnum ; + rdfs:label "south station underground" ; + rdfs:subClassOf nmdc:TrainStatLocEnum . - a owl:Class, - nmdc:DeviceTypeEnum ; - rdfs:label "thermomixer" . + a owl:Class, + nmdc:TrainStopLocEnum ; + rdfs:label "downtown" ; + rdfs:subClassOf nmdc:TrainStopLocEnum . - a owl:Class, - nmdc:DnaSampleFormatEnum ; - rdfs:label "10 mM Tris-HCl" . + a owl:Class, + nmdc:TrainStopLocEnum ; + rdfs:label "end" ; + rdfs:subClassOf nmdc:TrainStopLocEnum . - a owl:Class, - nmdc:DnaSampleFormatEnum ; - rdfs:label "DNAStable" . + a owl:Class, + nmdc:TrainStopLocEnum ; + rdfs:label "mid" ; + rdfs:subClassOf nmdc:TrainStopLocEnum . - a owl:Class, - nmdc:DnaSampleFormatEnum ; - rdfs:label "Ethanol" . + a owl:Class, + nmdc:VisMediaEnum ; + rdfs:label "3D scans" ; + rdfs:subClassOf nmdc:VisMediaEnum . - a owl:Class, - nmdc:DnaSampleFormatEnum ; - rdfs:label "Gentegra-DNA" . + a owl:Class, + nmdc:VisMediaEnum ; + rdfs:label "commonly of the building" ; + rdfs:subClassOf nmdc:VisMediaEnum . - a owl:Class, - nmdc:DnaSampleFormatEnum ; - rdfs:label "Gentegra-RNA" . + a owl:Class, + nmdc:VisMediaEnum ; + rdfs:label "equipment" ; + rdfs:subClassOf nmdc:VisMediaEnum . - a owl:Class, - nmdc:DnaSampleFormatEnum ; - rdfs:label "Low EDTA TE" . + a owl:Class, + nmdc:VisMediaEnum ; + rdfs:label "interiors" ; + rdfs:subClassOf nmdc:VisMediaEnum . - a owl:Class, - nmdc:DnaSampleFormatEnum ; - rdfs:label "MDA reaction buffer" . + a owl:Class, + nmdc:VisMediaEnum ; + rdfs:label "photos" ; + rdfs:subClassOf nmdc:VisMediaEnum . - a owl:Class, - nmdc:DnaSampleFormatEnum ; - rdfs:label "PBS" . + a owl:Class, + nmdc:VisMediaEnum ; + rdfs:label "site context (adjacent buildings, vegetation, terrain, streets)" ; + rdfs:subClassOf nmdc:VisMediaEnum . - a owl:Class, - nmdc:DnaSampleFormatEnum ; - rdfs:label "Pellet" . + a owl:Class, + nmdc:VisMediaEnum ; + rdfs:label "videos" ; + rdfs:subClassOf nmdc:VisMediaEnum . - a owl:Class, - nmdc:DnaSampleFormatEnum ; - rdfs:label "RNAStable" . + a owl:Class, + nmdc:WallConstTypeEnum ; + rdfs:label "fire resistive" ; + rdfs:subClassOf nmdc:WallConstTypeEnum . - a owl:Class, - nmdc:DnaSampleFormatEnum ; - rdfs:label "TE" . + a owl:Class, + nmdc:WallConstTypeEnum ; + rdfs:label "frame construction" ; + rdfs:subClassOf nmdc:WallConstTypeEnum . - a owl:Class, - nmdc:DnaSampleFormatEnum ; - rdfs:label "Water" . + a owl:Class, + nmdc:WallConstTypeEnum ; + rdfs:label "joisted masonry" ; + rdfs:subClassOf nmdc:WallConstTypeEnum . - a owl:Class, - nmdc:DoiCategoryEnum ; - rdfs:label "award_doi" . + a owl:Class, + nmdc:WallConstTypeEnum ; + rdfs:label "light noncombustible" ; + rdfs:subClassOf nmdc:WallConstTypeEnum . - a owl:Class, - nmdc:DoiCategoryEnum ; - rdfs:label "data_management_plan_doi" . + a owl:Class, + nmdc:WallConstTypeEnum ; + rdfs:label "masonry noncombustible" ; + rdfs:subClassOf nmdc:WallConstTypeEnum . - a owl:Class, - nmdc:DoiCategoryEnum ; - rdfs:label "dataset_doi" . + a owl:Class, + nmdc:WallConstTypeEnum ; + rdfs:label "modified fire resistive" ; + rdfs:subClassOf nmdc:WallConstTypeEnum . - a owl:Class, - nmdc:DoiCategoryEnum ; - rdfs:label "publication_doi" . + a owl:Class, + nmdc:WallFinishMatEnum ; + rdfs:label "acoustical treatment" ; + rdfs:subClassOf nmdc:WallFinishMatEnum . - a owl:Class, - nmdc:DoiProviderEnum ; - rdfs:label "gsc" . + a owl:Class, + nmdc:WallFinishMatEnum ; + rdfs:label "gypsum board" ; + rdfs:subClassOf nmdc:WallFinishMatEnum . - a owl:Class, - nmdc:DoiProviderEnum ; - rdfs:label "massive" . + a owl:Class, + nmdc:WallFinishMatEnum ; + rdfs:label "gypsum plaster" ; + rdfs:subClassOf nmdc:WallFinishMatEnum . - a owl:Class, - nmdc:DoiProviderEnum ; - rdfs:label "zenodo" . + a owl:Class, + nmdc:WallFinishMatEnum ; + rdfs:label "masonry" ; + rdfs:subClassOf nmdc:WallFinishMatEnum . - a owl:Class, - nmdc:DoorCompTypeEnum ; - rdfs:label "metal covered" . + a owl:Class, + nmdc:WallFinishMatEnum ; + rdfs:label "metal" ; + rdfs:subClassOf nmdc:WallFinishMatEnum . - a owl:Class, - nmdc:DoorCompTypeEnum ; - rdfs:label "revolving" . + a owl:Class, + nmdc:WallFinishMatEnum ; + rdfs:label "plaster" ; + rdfs:subClassOf nmdc:WallFinishMatEnum . - a owl:Class, - nmdc:DoorCompTypeEnum ; - rdfs:label "sliding" . + a owl:Class, + nmdc:WallFinishMatEnum ; + rdfs:label "stone facing" ; + rdfs:subClassOf nmdc:WallFinishMatEnum . - a owl:Class, - nmdc:DoorCompTypeEnum ; - rdfs:label "telescopic" . + a owl:Class, + nmdc:WallFinishMatEnum ; + rdfs:label "terrazzo" ; + rdfs:subClassOf nmdc:WallFinishMatEnum . - a owl:Class, - nmdc:DoorCondEnum ; - rdfs:label "damaged" . + a owl:Class, + nmdc:WallFinishMatEnum ; + rdfs:label "tile" ; + rdfs:subClassOf nmdc:WallFinishMatEnum . - a owl:Class, - nmdc:DoorCondEnum ; - rdfs:label "needs repair" . + a owl:Class, + nmdc:WallFinishMatEnum ; + rdfs:label "veneer plaster" ; + rdfs:subClassOf nmdc:WallFinishMatEnum . - a owl:Class, - nmdc:DoorCondEnum ; - rdfs:label "new" . + a owl:Class, + nmdc:WallFinishMatEnum ; + rdfs:label "wood" ; + rdfs:subClassOf nmdc:WallFinishMatEnum . - a owl:Class, - nmdc:DoorCondEnum ; - rdfs:label "rupture" . + a owl:Class, + nmdc:WallLocEnum ; + rdfs:label "east" ; + rdfs:subClassOf nmdc:WallLocEnum . - a owl:Class, - nmdc:DoorCondEnum ; - rdfs:label "visible wear" . + a owl:Class, + nmdc:WallLocEnum ; + rdfs:label "north" ; + rdfs:subClassOf nmdc:WallLocEnum . - a owl:Class, - nmdc:DoorDirectEnum ; - rdfs:label "inward" . + a owl:Class, + nmdc:WallLocEnum ; + rdfs:label "south" ; + rdfs:subClassOf nmdc:WallLocEnum . - a owl:Class, - nmdc:DoorDirectEnum ; - rdfs:label "outward" . + a owl:Class, + nmdc:WallLocEnum ; + rdfs:label "west" ; + rdfs:subClassOf nmdc:WallLocEnum . - a owl:Class, - nmdc:DoorDirectEnum ; - rdfs:label "sideways" . + a owl:Class, + nmdc:WallSurfTreatmentEnum ; + rdfs:label "fabric" ; + rdfs:subClassOf nmdc:WallSurfTreatmentEnum . - a owl:Class, - nmdc:DoorLocEnum ; - rdfs:label "east" . + a owl:Class, + nmdc:WallSurfTreatmentEnum ; + rdfs:label "no treatment" ; + rdfs:subClassOf nmdc:WallSurfTreatmentEnum . - a owl:Class, - nmdc:DoorLocEnum ; - rdfs:label "north" . + a owl:Class, + nmdc:WallSurfTreatmentEnum ; + rdfs:label "painted" ; + rdfs:subClassOf nmdc:WallSurfTreatmentEnum . - a owl:Class, - nmdc:DoorLocEnum ; - rdfs:label "south" . + a owl:Class, + nmdc:WallSurfTreatmentEnum ; + rdfs:label "paneling" ; + rdfs:subClassOf nmdc:WallSurfTreatmentEnum . - a owl:Class, - nmdc:DoorLocEnum ; - rdfs:label "west" . + a owl:Class, + nmdc:WallSurfTreatmentEnum ; + rdfs:label "stucco" ; + rdfs:subClassOf nmdc:WallSurfTreatmentEnum . - a owl:Class, - nmdc:DoorMatEnum ; - rdfs:label "aluminum" . + a owl:Class, + nmdc:WallSurfTreatmentEnum ; + rdfs:label "wall paper" ; + rdfs:subClassOf nmdc:WallSurfTreatmentEnum . - a owl:Class, - nmdc:DoorMatEnum ; - rdfs:label "cellular PVC" . + a owl:Class, + nmdc:WallTextureEnum ; + rdfs:label "" ; + rdfs:subClassOf nmdc:WallTextureEnum . - a owl:Class, - nmdc:DoorMatEnum ; - rdfs:label "engineered plastic" . + a owl:Class, + nmdc:WallTextureEnum ; + rdfs:label "Santa-Fe texture" ; + rdfs:subClassOf nmdc:WallTextureEnum . - a owl:Class, - nmdc:DoorMatEnum ; - rdfs:label "fiberboard" . + a owl:Class, + nmdc:WallTextureEnum ; + rdfs:label "crows feet" ; + rdfs:subClassOf nmdc:WallTextureEnum . - a owl:Class, - nmdc:DoorMatEnum ; - rdfs:label "fiberglass" . + a owl:Class, + nmdc:WallTextureEnum ; + rdfs:label "crows-foot stomp" ; + rdfs:subClassOf nmdc:WallTextureEnum . - a owl:Class, - nmdc:DoorMatEnum ; - rdfs:label "metal" . + a owl:Class, + nmdc:WallTextureEnum ; + rdfs:label "double skip" ; + rdfs:subClassOf nmdc:WallTextureEnum . - a owl:Class, - nmdc:DoorMatEnum ; - rdfs:label "thermoplastic alloy" . + a owl:Class, + nmdc:WallTextureEnum ; + rdfs:label "hawk and trowel" ; + rdfs:subClassOf nmdc:WallTextureEnum . - a owl:Class, - nmdc:DoorMatEnum ; - rdfs:label "vinyl" . + a owl:Class, + nmdc:WallTextureEnum ; + rdfs:label "knockdown" ; + rdfs:subClassOf nmdc:WallTextureEnum . - a owl:Class, - nmdc:DoorMatEnum ; - rdfs:label "wood" . + a owl:Class, + nmdc:WallTextureEnum ; + rdfs:label "orange peel" ; + rdfs:subClassOf nmdc:WallTextureEnum . - a owl:Class, - nmdc:DoorMatEnum ; - rdfs:label "wood/plastic composite" . + a owl:Class, + nmdc:WallTextureEnum ; + rdfs:label "popcorn" ; + rdfs:subClassOf nmdc:WallTextureEnum . - a owl:Class, - nmdc:DoorMoveEnum ; - rdfs:label "collapsible" . + a owl:Class, + nmdc:WallTextureEnum ; + rdfs:label "rosebud stomp" ; + rdfs:subClassOf nmdc:WallTextureEnum . - a owl:Class, - nmdc:DoorMoveEnum ; - rdfs:label "folding" . + a owl:Class, + nmdc:WallTextureEnum ; + rdfs:label "skip trowel" ; + rdfs:subClassOf nmdc:WallTextureEnum . - a owl:Class, - nmdc:DoorMoveEnum ; - rdfs:label "revolving" . + a owl:Class, + nmdc:WallTextureEnum ; + rdfs:label "smooth" ; + rdfs:subClassOf nmdc:WallTextureEnum . - a owl:Class, - nmdc:DoorMoveEnum ; - rdfs:label "rolling shutter" . + a owl:Class, + nmdc:WallTextureEnum ; + rdfs:label "stomp knockdown" ; + rdfs:subClassOf nmdc:WallTextureEnum . - a owl:Class, - nmdc:DoorMoveEnum ; - rdfs:label "sliding" . + a owl:Class, + nmdc:WallTextureEnum ; + rdfs:label "swirl" ; + rdfs:subClassOf nmdc:WallTextureEnum . - a owl:Class, - nmdc:DoorMoveEnum ; - rdfs:label "swinging" . + a owl:Class, + nmdc:WaterFeatTypeEnum ; + rdfs:label "fountain" ; + rdfs:subClassOf nmdc:WaterFeatTypeEnum . - a owl:Class, - nmdc:DoorTypeEnum ; - rdfs:label "composite" . + a owl:Class, + nmdc:WaterFeatTypeEnum ; + rdfs:label "pool" ; + rdfs:subClassOf nmdc:WaterFeatTypeEnum . - a owl:Class, - nmdc:DoorTypeEnum ; - rdfs:label "metal" . + a owl:Class, + nmdc:WaterFeatTypeEnum ; + rdfs:label "standing feature" ; + rdfs:subClassOf nmdc:WaterFeatTypeEnum . - a owl:Class, - nmdc:DoorTypeEnum ; - rdfs:label "wooden" . + a owl:Class, + nmdc:WaterFeatTypeEnum ; + rdfs:label "stream" ; + rdfs:subClassOf nmdc:WaterFeatTypeEnum . - a owl:Class, - nmdc:DoorTypeMetalEnum ; - rdfs:label "collapsible" . + a owl:Class, + nmdc:WaterFeatTypeEnum ; + rdfs:label "waterfall" ; + rdfs:subClassOf nmdc:WaterFeatTypeEnum . - a owl:Class, - nmdc:DoorTypeMetalEnum ; - rdfs:label "corrugated steel" . + a owl:Class, + nmdc:WeekdayEnum ; + rdfs:label "Friday" ; + rdfs:subClassOf nmdc:WeekdayEnum . - a owl:Class, - nmdc:DoorTypeMetalEnum ; - rdfs:label "hollow" . + a owl:Class, + nmdc:WeekdayEnum ; + rdfs:label "Monday" ; + rdfs:subClassOf nmdc:WeekdayEnum . - a owl:Class, - nmdc:DoorTypeMetalEnum ; - rdfs:label "rolling shutters" . + a owl:Class, + nmdc:WeekdayEnum ; + rdfs:label "Saturday" ; + rdfs:subClassOf nmdc:WeekdayEnum . - a owl:Class, - nmdc:DoorTypeMetalEnum ; - rdfs:label "steel plate" . + a owl:Class, + nmdc:WeekdayEnum ; + rdfs:label "Sunday" ; + rdfs:subClassOf nmdc:WeekdayEnum . - a owl:Class, - nmdc:DoorTypeWoodEnum ; - rdfs:label "battened" . + a owl:Class, + nmdc:WeekdayEnum ; + rdfs:label "Thursday" ; + rdfs:subClassOf nmdc:WeekdayEnum . - a owl:Class, - nmdc:DoorTypeWoodEnum ; - rdfs:label "bettened and ledged" . + a owl:Class, + nmdc:WeekdayEnum ; + rdfs:label "Tuesday" ; + rdfs:subClassOf nmdc:WeekdayEnum . - a owl:Class, - nmdc:DoorTypeWoodEnum ; - rdfs:label "flush" . + a owl:Class, + nmdc:WeekdayEnum ; + rdfs:label "Wednesday" ; + rdfs:subClassOf nmdc:WeekdayEnum . - a owl:Class, - nmdc:DoorTypeWoodEnum ; - rdfs:label "framed and paneled" . + a owl:Class, + nmdc:WindowCondEnum ; + rdfs:label "damaged" ; + rdfs:subClassOf nmdc:WindowCondEnum . - a owl:Class, - nmdc:DoorTypeWoodEnum ; - rdfs:label "glashed or sash" . + a owl:Class, + nmdc:WindowCondEnum ; + rdfs:label "needs repair" ; + rdfs:subClassOf nmdc:WindowCondEnum . - a owl:Class, - nmdc:DoorTypeWoodEnum ; - rdfs:label "ledged and braced" . + a owl:Class, + nmdc:WindowCondEnum ; + rdfs:label "new" ; + rdfs:subClassOf nmdc:WindowCondEnum . - a owl:Class, - nmdc:DoorTypeWoodEnum ; - rdfs:label "ledged and framed" . + a owl:Class, + nmdc:WindowCondEnum ; + rdfs:label "rupture" ; + rdfs:subClassOf nmdc:WindowCondEnum . - a owl:Class, - nmdc:DoorTypeWoodEnum ; - rdfs:label "ledged, braced and frame" . + a owl:Class, + nmdc:WindowCondEnum ; + rdfs:label "visible wear" ; + rdfs:subClassOf nmdc:WindowCondEnum . - a owl:Class, - nmdc:DoorTypeWoodEnum ; - rdfs:label "louvered" . + a owl:Class, + nmdc:WindowCoverEnum ; + rdfs:label "blinds" ; + rdfs:subClassOf nmdc:WindowCoverEnum . - a owl:Class, - nmdc:DoorTypeWoodEnum ; - rdfs:label "wire gauged" . + a owl:Class, + nmdc:WindowCoverEnum ; + rdfs:label "curtains" ; + rdfs:subClassOf nmdc:WindowCoverEnum . - a owl:Class, - nmdc:DrainageClassEnum ; - rdfs:label "excessively drained" . + a owl:Class, + nmdc:WindowCoverEnum ; + rdfs:label "none" ; + rdfs:subClassOf nmdc:WindowCoverEnum . - a owl:Class, - nmdc:DrainageClassEnum ; - rdfs:label "moderately well" . + a owl:Class, + nmdc:WindowHorizPosEnum ; + rdfs:label "left" ; + rdfs:subClassOf nmdc:WindowHorizPosEnum . - a owl:Class, - nmdc:DrainageClassEnum ; - rdfs:label "poorly" . + a owl:Class, + nmdc:WindowHorizPosEnum ; + rdfs:label "middle" ; + rdfs:subClassOf nmdc:WindowHorizPosEnum . - a owl:Class, - nmdc:DrainageClassEnum ; - rdfs:label "somewhat poorly" . + a owl:Class, + nmdc:WindowHorizPosEnum ; + rdfs:label "right" ; + rdfs:subClassOf nmdc:WindowHorizPosEnum . - a owl:Class, - nmdc:DrainageClassEnum ; - rdfs:label "very poorly" . + a owl:Class, + nmdc:WindowLocEnum ; + rdfs:label "east" ; + rdfs:subClassOf nmdc:WindowLocEnum . - a owl:Class, - nmdc:DrainageClassEnum ; - rdfs:label "well" . + a owl:Class, + nmdc:WindowLocEnum ; + rdfs:label "north" ; + rdfs:subClassOf nmdc:WindowLocEnum . - a owl:Class, - nmdc:DrawingsEnum ; - rdfs:label "as built" . + a owl:Class, + nmdc:WindowLocEnum ; + rdfs:label "south" ; + rdfs:subClassOf nmdc:WindowLocEnum . - a owl:Class, - nmdc:DrawingsEnum ; - rdfs:label "bid" . - - a owl:Class, - nmdc:DrawingsEnum ; - rdfs:label "building navigation map" . + a owl:Class, + nmdc:WindowLocEnum ; + rdfs:label "west" ; + rdfs:subClassOf nmdc:WindowLocEnum . - a owl:Class, - nmdc:DrawingsEnum ; - rdfs:label "construction" . + a owl:Class, + nmdc:WindowMatEnum ; + rdfs:label "clad" ; + rdfs:subClassOf nmdc:WindowMatEnum . - a owl:Class, - nmdc:DrawingsEnum ; - rdfs:label "design" . + a owl:Class, + nmdc:WindowMatEnum ; + rdfs:label "fiberglass" ; + rdfs:subClassOf nmdc:WindowMatEnum . - a owl:Class, - nmdc:DrawingsEnum ; - rdfs:label "diagram" . + a owl:Class, + nmdc:WindowMatEnum ; + rdfs:label "metal" ; + rdfs:subClassOf nmdc:WindowMatEnum . - a owl:Class, - nmdc:DrawingsEnum ; - rdfs:label "operation" . + a owl:Class, + nmdc:WindowMatEnum ; + rdfs:label "vinyl" ; + rdfs:subClassOf nmdc:WindowMatEnum . - a owl:Class, - nmdc:DrawingsEnum ; - rdfs:label "sketch" . + a owl:Class, + nmdc:WindowMatEnum ; + rdfs:label "wood" ; + rdfs:subClassOf nmdc:WindowMatEnum . - a owl:Class, - nmdc:ExtWallOrientEnum ; - rdfs:label "east" . + a owl:Class, + nmdc:WindowTypeEnum ; + rdfs:label "fixed window" ; + rdfs:subClassOf nmdc:WindowTypeEnum . - a owl:Class, - nmdc:ExtWallOrientEnum ; - rdfs:label "north" . + a owl:Class, + nmdc:WindowTypeEnum ; + rdfs:label "horizontal sash window" ; + rdfs:subClassOf nmdc:WindowTypeEnum . - a owl:Class, - nmdc:ExtWallOrientEnum ; - rdfs:label "northeast" . + a owl:Class, + nmdc:WindowTypeEnum ; + rdfs:label "single-hung sash window" ; + rdfs:subClassOf nmdc:WindowTypeEnum . - a owl:Class, - nmdc:ExtWallOrientEnum ; - rdfs:label "northwest" . + a owl:Class, + nmdc:WindowVertPosEnum ; + rdfs:label "bottom" ; + rdfs:subClassOf nmdc:WindowVertPosEnum . - a owl:Class, - nmdc:ExtWallOrientEnum ; - rdfs:label "south" . + a owl:Class, + nmdc:WindowVertPosEnum ; + rdfs:label "high" ; + rdfs:subClassOf nmdc:WindowVertPosEnum . - a owl:Class, - nmdc:ExtWallOrientEnum ; - rdfs:label "southeast" . + a owl:Class, + nmdc:WindowVertPosEnum ; + rdfs:label "low" ; + rdfs:subClassOf nmdc:WindowVertPosEnum . - a owl:Class, - nmdc:ExtWallOrientEnum ; - rdfs:label "southwest" . + a owl:Class, + nmdc:WindowVertPosEnum ; + rdfs:label "middle" ; + rdfs:subClassOf nmdc:WindowVertPosEnum . - a owl:Class, - nmdc:ExtWallOrientEnum ; - rdfs:label "west" . + a owl:Class, + nmdc:WindowVertPosEnum ; + rdfs:label "top" ; + rdfs:subClassOf nmdc:WindowVertPosEnum . - a owl:Class, - nmdc:ExtWindowOrientEnum ; - rdfs:label "east" . + a owl:Class, + nmdc:YesNoEnum ; + rdfs:label "no" ; + rdfs:subClassOf nmdc:YesNoEnum . - a owl:Class, - nmdc:ExtWindowOrientEnum ; - rdfs:label "north" . + a owl:Class, + nmdc:YesNoEnum ; + rdfs:label "yes" ; + rdfs:subClassOf nmdc:YesNoEnum . - a owl:Class, - nmdc:ExtWindowOrientEnum ; - rdfs:label "northeast" . +nmdc:alternative_descriptions a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "alternative_descriptions" ; + rdfs:range linkml:String ; + skos:definition "A list of alternative descriptions for the entity. The distinction between description and alternative descriptions is application-specific." ; + skos:inScheme nmdc:basic_slots . - a owl:Class, - nmdc:ExtWindowOrientEnum ; - rdfs:label "northwest" . +nmdc:alternative_names a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "alternative_names" ; + rdfs:range linkml:String ; + skos:definition "A list of alternative names used to refer to the entity. The distinction between name and alternative names is application-specific." ; + skos:exactMatch dcterms:alternative, + skos:altLabel ; + skos:inScheme nmdc:basic_slots . - a owl:Class, - nmdc:ExtWindowOrientEnum ; - rdfs:label "south" . +nmdc:alternative_titles a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "alternative_titles" ; + rdfs:range linkml:String ; + skos:definition "A list of alternative titles for the entity. The distinction between title and alternative titles is application-specific." ; + skos:exactMatch dcterms:alternative ; + skos:inScheme nmdc:basic_slots . - a owl:Class, - nmdc:ExtWindowOrientEnum ; - rdfs:label "southeast" . +nmdc:analysis_type a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "analysis_type" ; + dcterms:title "analysis/data type" ; + rdfs:range nmdc:AnalysisTypeEnum ; + rdfs:seeAlso ; + skos:definition "Select all the data types associated or available for this biosample" ; + skos:inScheme ; + sh:order 3 . - a owl:Class, - nmdc:ExtWindowOrientEnum ; - rdfs:label "southwest" . +nmdc:applied_roles a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "applied_roles" ; + rdfs:domain nmdc:CreditAssociation ; + rdfs:range nmdc:CreditEnum ; + skos:inScheme nmdc:nmdc ; + nmdc:display_hint "Identify all CRediT roles associated with this contributor. CRediT Information: https://info.orcid.org/credit-for-research-contribution ; CRediT: https://credit.niso.org/" . - a owl:Class, - nmdc:ExtWindowOrientEnum ; - rdfs:label "west" . +nmdc:associated_dois a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "associated_dois" ; + rdfs:domain nmdc:Study ; + rdfs:range nmdc:Doi ; + skos:altLabel "Associated DOIs", + "Associated digital object identifiers" ; + skos:definition "A list of DOIs associated with a resource, such as a list of DOIS associated with a Study." ; + skos:inScheme nmdc:nmdc . -nmdc:Extraction a owl:Class, - linkml:ClassDefinition ; - rdfs:label "Extraction" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:has_input ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:has_output ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:has_input ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:has_output ], - nmdc:BiosampleProcessing ; - skos:definition "A material separation in which a desired component of an input material is separated from the remainder." ; - skos:exactMatch OBI:0302884, - nmdc:Extraction ; +nmdc:biosample_categories a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "biosample_categories" ; + dcterms:title "Categories the biosample belongs to" ; + rdfs:range nmdc:BiosampleCategoryEnum ; skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:ExtractionTargetEnum ; - rdfs:label "DNA" . +nmdc:conditionings a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "conditionings" ; + rdfs:range linkml:String ; + skos:definition "Preliminary treatment of either phase with a suitable solution of the other phase (in the absence of main extractable solute(s)) so that when the subsequent equilibration is carried out changes in the (volume) phase ratio or in the concentrations of other components are minimized." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:ExtractionTargetEnum ; - rdfs:label "RNA" . +nmdc:dissolving_activity_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dissolving_activity_set" ; + dcterms:title "dissolving activity set" ; + rdfs:range nmdc:DissolvingActivity ; + skos:inScheme nmdc:sample_prep . - a owl:Class, - nmdc:ExtractionTargetEnum ; - rdfs:label "metabolite" . +nmdc:emsl_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "emsl_identifiers" ; + skos:inScheme nmdc:external_identifiers . - a owl:Class, - nmdc:ExtractionTargetEnum ; - rdfs:label "protein" . +nmdc:external_identifier a owl:Class, + linkml:TypeDefinition ; + rdfs:subClassOf linkml:Uriorcurie . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Acrisols" . +nmdc:functional_annotation_agg a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "functional_annotation_agg" ; + rdfs:range nmdc:FunctionalAnnotationAggMember ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Andosols" . +nmdc:funding_sources a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "funding_sources" ; + rdfs:range linkml:String ; + skos:closeMatch NCIT:C39409 ; + skos:definition "A list of organizations, along with the award numbers, that underwrite financial support for projects of a particular type. Typically, they process applications and award funds to the chosen qualified applicants." ; + skos:inScheme nmdc:nmdc ; + skos:note "Include only the name of the funding organization and the award or contract number." . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Arenosols" . +nmdc:gff_coordinate a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gff_coordinate" ; + rdfs:range [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Integer [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:minInclusive 1 ] ) ] ) ] ; + skos:definition "A positive 1-based integer coordinate indicating start or end" ; + skos:inScheme nmdc:annotation ; + skos:note "For features that cross the origin of a circular feature (e.g. most bacterial genomes, plasmids, and some viral genomes), the requirement for start to be less than or equal to end is satisfied by making end = the position of the end + the length of the landmark feature." . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Cambisols" . +nmdc:has_credit_associations a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has_credit_associations" ; + rdfs:domain nmdc:Study ; + rdfs:range nmdc:CreditAssociation ; + skos:definition "This slot links a study to a credit association. The credit association will be linked to a person value and to a CRediT Contributor Roles term. Overall semantics: person should get credit X for their participation in the study" ; + skos:editorialNote "had just been \"inlined: true\"" ; + skos:inScheme nmdc:nmdc ; + nmdc:display_hint "Other researchers associated with this study." . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Chernozems" . +nmdc:has_metabolite_quantifications a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has_metabolite_quantifications" ; + rdfs:range nmdc:MetaboliteQuantification ; + skos:inScheme nmdc:workflow_execution_activity . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Ferralsols" . +nmdc:has_part a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has_part" ; + rdfs:domain nmdc:NamedThing ; + rdfs:range nmdc:NamedThing ; + skos:inScheme nmdc:basic_slots ; + skos:note "originally limited to \"A pathway can be broken down to a series of reaction step\"" . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Fluvisols" . +nmdc:has_participants a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has_participants" ; + skos:exactMatch RO:0000057 ; + skos:inScheme nmdc:annotation . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Gleysols" . +nmdc:has_peptide_quantifications a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has_peptide_quantifications" ; + rdfs:range nmdc:PeptideQuantification ; + skos:inScheme nmdc:workflow_execution_activity . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Greyzems" . - - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Gypsisols" . - - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Histosols" . - - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Kastanozems" . - - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Lithosols" . - - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Luvisols" . - - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Nitosols" . +nmdc:left_participants a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "left_participants" ; + rdfs:range nmdc:ReactionParticipant ; + rdfs:subPropertyOf nmdc:has_participants ; + skos:inScheme nmdc:annotation . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Phaeozems" . +nmdc:mags_list a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "mags_list" ; + rdfs:range nmdc:MagBin ; + skos:inScheme nmdc:workflow_execution_activity . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Planosols" . +nmdc:material_sample_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "material_sample_set" ; + dcterms:title "material sample set" ; + rdfs:range nmdc:MaterialSample ; + skos:inScheme nmdc:sample_prep . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Podzols" . +nmdc:material_sampling_activity_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "material_sampling_activity_set" ; + dcterms:title "material sampling activity set" ; + rdfs:range nmdc:MaterialSamplingActivity ; + skos:inScheme nmdc:sample_prep . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Podzoluvisols" . +nmdc:mgnify_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "mgnify_identifiers" ; + rdfs:seeAlso ; + skos:inScheme nmdc:external_identifiers . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Rankers" . +nmdc:neon_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "neon_identifiers" ; + skos:definition "identifiers for entities according to NEON" ; + skos:inScheme nmdc:external_identifiers . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Regosols" . +nmdc:reaction_activity_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "reaction_activity_set" ; + rdfs:range nmdc:ReactionActivity ; + skos:inScheme nmdc:sample_prep . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Rendzinas" . +nmdc:relevant_protocols a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "relevant_protocols" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Solonchaks" . +nmdc:right_participants a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "right_participants" ; + rdfs:range nmdc:ReactionParticipant ; + rdfs:subPropertyOf nmdc:has_participants ; + skos:inScheme nmdc:annotation . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Solonetz" . +nmdc:sample_link a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "sample_link" ; + dcterms:title "sample linkage" ; + rdfs:range linkml:String ; + skos:definition "A unique identifier to assign parent-child, subsample, or sibling samples. This is relevant when a sample or other material was used to generate the new sample." ; + skos:inScheme ; + skos:note "This field allows multiple entries separated by ; (Examples: Soil collected from the field will link with the soil used in an incubation. The soil a plant was grown in links to the plant sample. An original culture sample was transferred to a new vial and generated a new sample)" ; + sh:order 5 . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Vertisols" . +nmdc:smiles a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "smiles" ; + rdfs:range linkml:String ; + skos:definition "A string encoding of a molecular graph, no chiral or isotopic information. There are usually a large number of valid SMILES which represent a given structure. For example, CCO, OCC and C(O)C all specify the structure of ethanol." ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:FaoClassEnum ; - rdfs:label "Yermosols" . +nmdc:study_image a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "study_image" ; + rdfs:domain nmdc:Study ; + rdfs:range nmdc:ImageValue ; + skos:definition "Links a study to one or more images." ; + skos:inScheme nmdc:nmdc . -nmdc:FieldResearchSite a owl:Class, - linkml:ClassDefinition ; - rdfs:label "FieldResearchSite" ; - dcterms:title "Field Research Site" ; +nmdc:unit a owl:Class, + linkml:TypeDefinition ; rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - nmdc:Site ; - skos:altLabel "research plot" ; - skos:definition "A site, outside of a laboratory, from which biosamples may be collected." ; - skos:inScheme nmdc:nmdc ; - skos:note "In Bioscales, one might say that rhizosphere soil and bulk soil from around the same plant were obtained at the same site. In this case, the site would correspond to one tree.", - "Provides grouping of biosamples at level that's more specific than belonging to the same study", - "be very clear that this could be part of a larger site", - "might correspond to GOLD's identifier on a page like https://gold.jgi.doe.gov/biosample?id=Gb0305833" . - - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Annotation Amino Acid FASTA" . - - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Annotation Enzyme Commission" . + owl:onDataRange nmdc:unit ; + owl:onProperty linkml:topValue ; + owl:qualifiedCardinality 1 ] . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Annotation Info File" . + a owl:Class, + nmdc:BiosampleCategoryEnum ; + rdfs:label "NEON" ; + rdfs:subClassOf nmdc:BiosampleCategoryEnum . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Annotation KEGG Orthology" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "abs_air_humidity" ; + dcterms:title "absolute air humidity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "absolute air humidity" ; + skos:definition "Actual mass of water vapor - mh20 - present in the air water vapor mixture" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "gram per gram, kilogram per kilogram, kilogram, pound" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Annotation Statistics" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "add_recov_method" ; + dcterms:title "secondary and tertiary recovery methods and start date" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "secondary and tertiary recovery methods and start date" ; + skos:definition "Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed for increase of hydrocarbon recovery from resource and start date for each one of them. If \"other\" is specified, please propose entry in \"additional info\" field" ; + skos:inScheme ; + nmdc:expected_value "enumeration;timestamp" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Assembly AGP" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "additional_info" ; + dcterms:title "additional info" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "additional info" ; + skos:definition "Information that doesn't fit anywhere else. Can also be used to propose new entries for fields with controlled vocabulary" ; + skos:inScheme ; + nmdc:expected_value "text" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Assembly Contigs" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "address" ; + dcterms:title "address" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "address" ; + skos:definition "The street name and building number where the sampling occurred." ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Assembly Coverage BAM" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "adj_room" ; + dcterms:title "adjacent rooms" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "adjacent rooms" ; + skos:definition "List of rooms (room number, room name) immediately adjacent to the sampling room" ; + skos:inScheme ; + nmdc:expected_value "room name;room number" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Assembly Coverage Stats" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "aero_struc" ; + dcterms:title "aerospace structure" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "aerospace structure" ; + skos:definition "Aerospace structures typically consist of thin plates with stiffeners for the external surfaces, bulkheads and frames to support the shape and fasteners such as welds, rivets, screws and bolts to hold the components together" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Assembly Info File" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "air_temp" ; + dcterms:title "air temperature" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "air temperature" ; + skos:definition "Temperature of the air at the time of sampling" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "degree Celsius" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Assembly Scaffolds" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "alkalinity" ; + dcterms:title "alkalinity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "alkalinity" ; + skos:definition "Alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milliequivalent per liter, milligram per liter" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "CATH FunFams (Functional Families) Annotation GFF" . - - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "CRT Annotation GFF" . - - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Centrifuge Classification Report" . - - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Centrifuge Krona Plot" . - - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Centrifuge Taxonomic Classification" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "alkalinity_method" ; + dcterms:title "alkalinity method" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "alkalinity method" ; + skos:definition "Method used for alkalinity measurement" ; + skos:inScheme ; + nmdc:expected_value "description of method" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Centrifuge output report file" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "alkyl_diethers" ; + dcterms:title "alkyl diethers" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "alkyl diethers" ; + skos:definition "Concentration of alkyl diethers" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "mole per liter" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "CheckM Statistics" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "alt" ; + dcterms:title "altitude" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "altitude" ; + skos:definition "Altitude is a term used to identify heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. In this context, the altitude measurement is the vertical distance between the earth's surface above sea level and the sampled position in the air" ; + skos:inScheme ; + nmdc:expected_value "measurement value" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Clusters of Orthologous Groups (COG) Annotation GFF" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "aminopept_act" ; + dcterms:title "aminopeptidase activity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "aminopeptidase activity" ; + skos:definition "Measurement of aminopeptidase activity" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "mole per liter per hour" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Contig Mapping File" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ammonium" ; + dcterms:title "ammonium" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "ammonium" ; + skos:definition "Concentration of ammonium in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Crispr Terms" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "amount_light" ; + dcterms:title "amount of light" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "amount of light" ; + skos:definition "The unit of illuminance and luminous emittance, measuring luminous flux per unit area" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "lux, lumens per square meter" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Direct Infusion FT ICR-MS Raw Data" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ances_data" ; + dcterms:title "ancestral data" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "ancestral data" ; + skos:definition "Information about either pedigree or other ancestral information description (e.g. parental variety in case of mutant or selection), e.g. A/3*B (meaning [(A x B) x B] x B)" ; + skos:inScheme ; + nmdc:expected_value "free text" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Error Corrected Reads" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "annual_temp" ; + dcterms:title "mean annual temperature" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "mean annual temperature" ; + skos:definition "Mean annual temperature" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "degree Celsius" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "FT ICR-MS Analysis Results" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "api" ; + dcterms:title "API gravity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "API gravity" ; + skos:definition "API gravity is a measure of how heavy or light a petroleum liquid is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g. 31.1¬∞ API)" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "degrees API" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Filtered Sequencing Reads" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "arch_struc" ; + dcterms:title "architectural structure" ; + rdfs:range nmdc:ArchStrucEnum ; + rdfs:subPropertyOf ; + skos:altLabel "architectural structure" ; + skos:definition "An architectural structure is a human-made, free-standing, immobile outdoor construction" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Functional Annotation GFF" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "aromatics_pc" ; + dcterms:title "aromatics wt%" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "aromatics wt%" ; + skos:definition "Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; + skos:inScheme ; + nmdc:expected_value "name;measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "percent" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "GC-MS Metabolomics Results" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "asphaltenes_pc" ; + dcterms:title "asphaltenes wt%" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "asphaltenes wt%" ; + skos:definition "Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; + skos:inScheme ; + nmdc:expected_value "name;measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "percent" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "GOTTCHA2 Classification Report" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "avg_dew_point" ; + dcterms:title "average dew point" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "average dew point" ; + skos:definition "The average of dew point measures taken at the beginning of every hour over a 24 hour period on the sampling day" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "degree Celsius" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "GOTTCHA2 Krona Plot" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "avg_occup" ; + dcterms:title "average daily occupancy" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "average daily occupancy" ; + skos:definition "Daily average occupancy of room. Indicate the number of person(s) daily occupying the sampling room." ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "GOTTCHA2 Report Full" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "avg_temp" ; + dcterms:title "average temperature" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "average temperature" ; + skos:definition "The average of temperatures taken at the beginning of every hour over a 24 hour period on the sampling day" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "degree Celsius" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "GTDBTK Archaeal Summary" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "bac_prod" ; + dcterms:title "bacterial production" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "bacterial production" ; + skos:definition "Bacterial production in the water column measured by isotope uptake" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per cubic meter per day" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "GTDBTK Bacterial Summary" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "bac_resp" ; + dcterms:title "bacterial respiration" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "bacterial respiration" ; + skos:definition "Measurement of bacterial respiration in the water column" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per cubic meter per day, micromole oxygen per liter per hour" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Gene Phylogeny tsv" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "bacteria_carb_prod" ; + dcterms:title "bacterial carbon production" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "bacterial carbon production" ; + skos:definition "Measurement of bacterial carbon production" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "nanogram per hour" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Genemark Annotation GFF" . - - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "KO_EC Annotation GFF" . - - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Kraken2 Classification Report" . - - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Kraken2 Krona Plot" . - - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Kraken2 Taxonomic Classification" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "barometric_press" ; + dcterms:title "barometric pressure" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "barometric pressure" ; + skos:definition "Force per unit area exerted against a surface by the weight of air above that surface" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "millibar" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Metagenome Bins" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "basin" ; + dcterms:title "basin name" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "basin name" ; + skos:definition "Name of the basin (e.g. Campos)" ; + skos:inScheme ; + nmdc:expected_value "name" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Metagenome Bins Compression File" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "bathroom_count" ; + dcterms:title "bathroom count" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "bathroom count" ; + skos:definition "The number of bathrooms in the building" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Metagenome Bins Info File" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "bedroom_count" ; + dcterms:title "bedroom count" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "bedroom count" ; + skos:definition "The number of bedrooms in the building" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Metagenome Raw Read 1" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "benzene" ; + dcterms:title "benzene" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "benzene" ; + skos:definition "Concentration of benzene in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter, parts per million" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Metagenome Raw Read 2" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "biochem_oxygen_dem" ; + dcterms:title "biochemical oxygen demand" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "biochemical oxygen demand" ; + skos:definition "Amount of dissolved oxygen needed by aerobic biological organisms in a body of water to break down organic material present in a given water sample at certain temperature over a specific time period" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Metagenome Raw Reads" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "biocide" ; + dcterms:title "biocide administration" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "biocide administration" ; + skos:definition "List of biocides (commercial name of product and supplier) and date of administration" ; + skos:inScheme ; + nmdc:expected_value "name;name;timestamp" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Metaproteomics Workflow Statistics" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "biocide_admin_method" ; + dcterms:title "biocide administration method" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "biocide administration method" ; + skos:definition "Method of biocide administration (dose, frequency, duration, time elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3 days)" ; + skos:inScheme ; + nmdc:expected_value "measurement value;frequency;duration;duration" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Misc Annotation GFF" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "biol_stat" ; + dcterms:title "biological status" ; + rdfs:range nmdc:BiolStatEnum ; + rdfs:subPropertyOf ; + skos:altLabel "biological status" ; + skos:definition "The level of genome modification." ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Peptide Report" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "bishomohopanol" ; + dcterms:title "bishomohopanol" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "bishomohopanol" ; + skos:definition "Concentration of bishomohopanol" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "microgram per liter, microgram per gram" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Pfam Annotation GFF" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "blood_press_diast" ; + dcterms:title "host blood pressure diastolic" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "host blood pressure diastolic" ; + skos:definition "Resting diastolic blood pressure, measured as mm mercury" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "millimeter mercury" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Prodigal Annotation GFF" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "blood_press_syst" ; + dcterms:title "host blood pressure systolic" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "host blood pressure systolic" ; + skos:definition "Resting systolic blood pressure, measured as mm mercury" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "millimeter mercury" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Product Names" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "bromide" ; + dcterms:title "bromide" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "bromide" ; + skos:definition "Concentration of bromide" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "parts per million" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Protein Report" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "build_docs" ; + dcterms:title "design, construction, and operation documents" ; + rdfs:range nmdc:BuildDocsEnum ; + rdfs:subPropertyOf ; + skos:altLabel "design, construction, and operation documents" ; + skos:definition "The building design, construction and operation documents" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "QC Statistics" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "building_setting" ; + dcterms:title "building setting" ; + rdfs:range nmdc:BuildingSettingEnum ; + rdfs:subPropertyOf ; + skos:altLabel "building setting" ; + skos:definition "A location (geography) where a building is set" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "QC Statistics Extended" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "built_struc_age" ; + dcterms:title "built structure age" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "built structure age" ; + skos:definition "The age of the built structure since construction" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "year" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "QC non-rRNA R1" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "built_struc_set" ; + dcterms:title "built structure setting" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "built structure setting" ; + skos:definition "The characterization of the location of the built structure as high or low human density" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "QC non-rRNA R2" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "built_struc_type" ; + dcterms:title "built structure type" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "built structure type" ; + skos:definition "A physical structure that is a body or assemblage of bodies in space to form a system capable of supporting loads" ; + skos:inScheme ; + nmdc:expected_value "free text" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "RFAM Annotation GFF" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "calcium" ; + dcterms:title "calcium" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "calcium" ; + skos:definition "Concentration of calcium in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter, micromole per liter, parts per million" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Read Based Analysis Info File" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "carb_dioxide" ; + dcterms:title "carbon dioxide" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "carbon dioxide" ; + skos:definition "Carbon dioxide (gas) amount or concentration at the time of sampling" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter, parts per million" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Read Count and RPKM" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "carb_monoxide" ; + dcterms:title "carbon monoxide" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "carbon monoxide" ; + skos:definition "Carbon monoxide (gas) amount or concentration at the time of sampling" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter, parts per million" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Read Filtering Info File" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "carb_nitro_ratio" ; + dcterms:title "carbon/nitrogen ratio" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "carbon/nitrogen ratio" ; + skos:definition "Ratio of amount or concentrations of carbon to nitrogen" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "SMART Annotation GFF" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ceil_area" ; + dcterms:title "ceiling area" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "ceiling area" ; + skos:definition "The area of the ceiling space within the room" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "square meter" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "SUPERFam Annotation GFF" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ceil_cond" ; + dcterms:title "ceiling condition" ; + rdfs:range nmdc:CeilCondEnum ; + rdfs:subPropertyOf ; + skos:altLabel "ceiling condition" ; + skos:definition "The physical condition of the ceiling at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Scaffold Lineage tsv" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ceil_finish_mat" ; + dcterms:title "ceiling finish material" ; + rdfs:range nmdc:CeilFinishMatEnum ; + rdfs:subPropertyOf ; + skos:altLabel "ceiling finish material" ; + skos:definition "The type of material used to finish a ceiling" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Structural Annotation GFF" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ceil_struc" ; + dcterms:title "ceiling structure" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "ceiling structure" ; + skos:definition "The construction format of the ceiling" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Structural Annotation Stats Json" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ceil_texture" ; + dcterms:title "ceiling texture" ; + rdfs:range nmdc:CeilTextureEnum ; + rdfs:subPropertyOf ; + skos:altLabel "ceiling texture" ; + skos:definition "The feel, appearance, or consistency of a ceiling surface" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "TIGRFam Annotation GFF" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ceil_thermal_mass" ; + dcterms:title "ceiling thermal mass" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "ceiling thermal mass" ; + skos:definition "The ability of the ceiling to provide inertia against temperature fluctuations. Generally this means concrete that is exposed. A metal deck that supports a concrete slab will act thermally as long as it is exposed to room air flow" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "joule per degree Celsius" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "TMRNA Annotation GFF" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ceil_type" ; + dcterms:title "ceiling type" ; + rdfs:range nmdc:CeilTypeEnum ; + rdfs:subPropertyOf ; + skos:altLabel "ceiling type" ; + skos:definition "The type of ceiling according to the ceiling's appearance or construction" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "TRNA Annotation GFF" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ceil_water_mold" ; + dcterms:title "ceiling signs of water/mold" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "ceiling signs of water/mold" ; + skos:definition "Signs of the presence of mold or mildew on the ceiling" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FileTypeEnum ; - rdfs:label "Unfiltered Metaproteomics Results" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "chem_oxygen_dem" ; + dcterms:title "chemical oxygen demand" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "chemical oxygen demand" ; + skos:definition "A measure of the capacity of water to consume oxygen during the decomposition of organic matter and the oxidation of inorganic chemicals such as ammonia and nitrite" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter" . - a owl:Class, - nmdc:FilterTypeEnum ; - rdfs:label "HEPA" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "chem_treat_method" ; + dcterms:title "chemical treatment method" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf ; + skos:altLabel "chemical treatment method" ; + skos:definition "Method of chemical administration(dose, frequency, duration, time elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1 hr; 0 days)" ; + skos:inScheme ; + nmdc:expected_value "measurement value;frequency;duration;duration" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter" . - a owl:Class, - nmdc:FilterTypeEnum ; - rdfs:label "chemical air filter" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "chem_treatment" ; + dcterms:title "chemical treatment" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "chemical treatment" ; + skos:definition "List of chemical compounds administered upstream the sampling location where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors, demulsifiers, and other production chemicals etc.). The commercial name of the product and name of the supplier should be provided. The date of administration should also be included" ; + skos:inScheme ; + nmdc:expected_value "name;name;timestamp" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FilterTypeEnum ; - rdfs:label "electrostatic" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "chloride" ; + dcterms:title "chloride" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "chloride" ; + skos:definition "Concentration of chloride in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter, parts per million" . - a owl:Class, - nmdc:FilterTypeEnum ; - rdfs:label "gas-phase or ultraviolet air treatments" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "chlorophyll" ; + dcterms:title "chlorophyll" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "chlorophyll" ; + skos:definition "Concentration of chlorophyll" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per cubic meter, microgram per liter" . - a owl:Class, - nmdc:FilterTypeEnum ; - rdfs:label "low-MERV pleated media" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "collection_date" ; + dcterms:title "collection date" ; + rdfs:range nmdc:TimestampValue ; + rdfs:subPropertyOf ; + skos:altLabel "collection date" ; + skos:definition "The time of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant" ; + skos:inScheme ; + nmdc:expected_value "date and time" . - a owl:Class, - nmdc:FilterTypeEnum ; - rdfs:label "particulate air filter" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "conduc" ; + dcterms:title "conductivity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "conductivity" ; + skos:definition "Electrical conductivity of water" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milliSiemens per centimeter" . - a owl:Class, - nmdc:FloorCondEnum ; - rdfs:label "damaged" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "cool_syst_id" ; + dcterms:title "cooling system identifier" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "cooling system identifier" ; + skos:definition "The cooling system identifier" ; + skos:inScheme ; + nmdc:expected_value "unique identifier" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorCondEnum ; - rdfs:label "needs repair" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "crop_rotation" ; + dcterms:title "history/crop rotation" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "history/crop rotation" ; + skos:definition "Whether or not crop is rotated, and if yes, rotation schedule" ; + skos:inScheme ; + nmdc:expected_value "crop rotation status;schedule" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorCondEnum ; - rdfs:label "new" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "cult_root_med" ; + dcterms:title "culture rooting medium" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "culture rooting medium" ; + skos:definition "Name or reference for the hydroponic or in vitro culture rooting medium; can be the name of a commonly used medium or reference to a specific medium, e.g. Murashige and Skoog medium. If the medium has not been formally published, use the rooting medium descriptors." ; + skos:inScheme ; + nmdc:expected_value "name, PMID,DOI or url" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorCondEnum ; - rdfs:label "rupture" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "cur_land_use" ; + dcterms:title "current land use" ; + rdfs:range nmdc:CurLandUseEnum ; + rdfs:subPropertyOf ; + skos:altLabel "current land use" ; + skos:definition "Present state of sample site" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorCondEnum ; - rdfs:label "visible wear" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "cur_vegetation" ; + dcterms:title "current vegetation" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "current vegetation" ; + skos:definition "Vegetation classification from one or more standard classification systems, or agricultural crop" ; + skos:inScheme ; + nmdc:expected_value "current vegetation type" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "bamboo" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "date_last_rain" ; + dcterms:title "date last rain" ; + rdfs:range nmdc:TimestampValue ; + rdfs:subPropertyOf ; + skos:altLabel "date last rain" ; + skos:definition "The date of the last time it rained" ; + skos:inScheme ; + nmdc:expected_value "timestamp" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "carpet" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "density" ; + dcterms:title "density" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "density" ; + skos:definition "Density of the sample, which is its mass per unit volume (aka volumetric mass density)" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "gram per cubic meter, gram per cubic centimeter" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "clear finish" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "depos_env" ; + dcterms:title "depositional environment" ; + rdfs:range nmdc:DeposEnvEnum ; + rdfs:subPropertyOf ; + skos:altLabel "depositional environment" ; + skos:definition "Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment). If \"other\" is specified, please propose entry in \"additional info\" field" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "concrete" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "depth" ; + dcterms:title "depth" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "depth" ; + skos:definition "The vertical distance below local surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples." ; + skos:inScheme ; + nmdc:expected_value "measurement value" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "cork" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dew_point" ; + dcterms:title "dew point" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "dew point" ; + skos:definition "The temperature to which a given parcel of humid air must be cooled, at constant barometric pressure, for water vapor to condense into water." ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "degree Celsius" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "laminate wood" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "diss_carb_dioxide" ; + dcterms:title "dissolved carbon dioxide" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "dissolved carbon dioxide" ; + skos:definition "Concentration of dissolved carbon dioxide in the sample or liquid portion of the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter, milligram per liter" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "lineoleum" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "diss_hydrogen" ; + dcterms:title "dissolved hydrogen" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "dissolved hydrogen" ; + skos:definition "Concentration of dissolved hydrogen" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "none" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "diss_inorg_carb" ; + dcterms:title "dissolved inorganic carbon" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "dissolved inorganic carbon" ; + skos:definition "Dissolved inorganic carbon concentration in the sample, typically measured after filtering the sample using a 0.45 micrometer filter" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "microgram per liter, milligram per liter, parts per million" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "none or unfinished" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "diss_inorg_nitro" ; + dcterms:title "dissolved inorganic nitrogen" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "dissolved inorganic nitrogen" ; + skos:definition "Concentration of dissolved inorganic nitrogen" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "microgram per liter, micromole per liter" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "paint" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "diss_inorg_phosp" ; + dcterms:title "dissolved inorganic phosphorus" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "dissolved inorganic phosphorus" ; + skos:definition "Concentration of dissolved inorganic phosphorus in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "microgram per liter, milligram per liter, parts per million" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "rug" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "diss_iron" ; + dcterms:title "dissolved iron" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "dissolved iron" ; + skos:definition "Concentration of dissolved iron in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "sealed" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "diss_org_carb" ; + dcterms:title "dissolved organic carbon" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "dissolved organic carbon" ; + skos:definition "Concentration of dissolved organic carbon in the sample, liquid portion of the sample, or aqueous phase of the fluid" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter, milligram per liter" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "sheet vinyl" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "diss_org_nitro" ; + dcterms:title "dissolved organic nitrogen" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "dissolved organic nitrogen" ; + skos:definition "Dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "microgram per liter, milligram per liter" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "stone" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "diss_oxygen" ; + dcterms:title "dissolved oxygen" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "dissolved oxygen" ; + skos:definition "Concentration of dissolved oxygen" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per kilogram, milligram per liter" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "terrazo" . - - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "tile" . - - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "vinyl composition tile" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "diss_oxygen_fluid" ; + dcterms:title "dissolved oxygen in fluids" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "dissolved oxygen in fluids" ; + skos:definition "Concentration of dissolved oxygen in the oil field produced fluids as it contributes to oxgen-corrosion and microbial activity (e.g. Mic)." ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per kilogram, milligram per liter" . - a owl:Class, - nmdc:FloorFinishMatEnum ; - rdfs:label "wood strip or parquet" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "door_comp_type" ; + dcterms:title "door type, composite" ; + rdfs:range nmdc:DoorCompTypeEnum ; + rdfs:subPropertyOf ; + skos:altLabel "door type, composite" ; + skos:definition "The composite type of the door" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorStrucEnum ; - rdfs:label "balcony" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "door_cond" ; + dcterms:title "door condition" ; + rdfs:range nmdc:DoorCondEnum ; + rdfs:subPropertyOf ; + skos:altLabel "door condition" ; + skos:definition "The phsical condition of the door" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorStrucEnum ; - rdfs:label "concrete" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "door_direct" ; + dcterms:title "door direction of opening" ; + rdfs:range nmdc:DoorDirectEnum ; + rdfs:subPropertyOf ; + skos:altLabel "door direction of opening" ; + skos:definition "The direction the door opens" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorStrucEnum ; - rdfs:label "floating floor" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "door_loc" ; + dcterms:title "door location" ; + rdfs:range nmdc:DoorLocEnum ; + rdfs:subPropertyOf ; + skos:altLabel "door location" ; + skos:definition "The relative location of the door in the room" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorStrucEnum ; - rdfs:label "glass floor" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "door_mat" ; + dcterms:title "door material" ; + rdfs:range nmdc:DoorMatEnum ; + rdfs:subPropertyOf ; + skos:altLabel "door material" ; + skos:definition "The material the door is composed of" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorStrucEnum ; - rdfs:label "raised floor" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "door_move" ; + dcterms:title "door movement" ; + rdfs:range nmdc:DoorMoveEnum ; + rdfs:subPropertyOf ; + skos:altLabel "door movement" ; + skos:definition "The type of movement of the door" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorStrucEnum ; - rdfs:label "sprung floor" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "door_size" ; + dcterms:title "door area or size" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "door area or size" ; + skos:definition "The size of the door" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "square meter" . - a owl:Class, - nmdc:FloorStrucEnum ; - rdfs:label "wood-framed" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "door_type" ; + dcterms:title "door type" ; + rdfs:range nmdc:DoorTypeEnum ; + rdfs:subPropertyOf ; + skos:altLabel "door type" ; + skos:definition "The type of door material" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorWaterMoldEnum ; - rdfs:label "bulging walls" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "door_type_metal" ; + dcterms:title "door type, metal" ; + rdfs:range nmdc:DoorTypeMetalEnum ; + rdfs:subPropertyOf ; + skos:altLabel "door type, metal" ; + skos:definition "The type of metal door" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorWaterMoldEnum ; - rdfs:label "ceiling discoloration" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "door_type_wood" ; + dcterms:title "door type, wood" ; + rdfs:range nmdc:DoorTypeWoodEnum ; + rdfs:subPropertyOf ; + skos:altLabel "door type, wood" ; + skos:definition "The type of wood door" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorWaterMoldEnum ; - rdfs:label "condensation" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "door_water_mold" ; + dcterms:title "door signs of water/mold" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "door signs of water/mold" ; + skos:definition "Signs of the presence of mold or mildew on a door" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorWaterMoldEnum ; - rdfs:label "floor discoloration" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "down_par" ; + dcterms:title "downward PAR" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "downward PAR" ; + skos:definition "Visible waveband radiance and irradiance measurements in the water column" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "microEinstein per square meter per second, microEinstein per square centimeter per second" . - a owl:Class, - nmdc:FloorWaterMoldEnum ; - rdfs:label "mold odor" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "drainage_class" ; + dcterms:title "drainage classification" ; + rdfs:range nmdc:DrainageClassEnum ; + rdfs:subPropertyOf ; + skos:altLabel "drainage classification" ; + skos:definition "Drainage classification from a standard system such as the USDA system" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorWaterMoldEnum ; - rdfs:label "peeling paint or wallpaper" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "drawings" ; + dcterms:title "drawings" ; + rdfs:range nmdc:DrawingsEnum ; + rdfs:subPropertyOf ; + skos:altLabel "drawings" ; + skos:definition "The buildings architectural drawings; if design is chosen, indicate phase-conceptual, schematic, design development, and construction documents" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FloorWaterMoldEnum ; - rdfs:label "wall discoloration" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "efficiency_percent" ; + dcterms:title "efficiency percent" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "efficiency percent" ; + skos:definition "Percentage of volatile solids removed from the anaerobic digestor" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter" . - a owl:Class, - nmdc:FloorWaterMoldEnum ; - rdfs:label "water stains" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "elev" ; + dcterms:title "elevation" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "elevation" ; + skos:definition "Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit." ; + skos:inScheme ; + nmdc:expected_value "measurement value" . - a owl:Class, - nmdc:FloorWaterMoldEnum ; - rdfs:label "wet floor" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "elevator" ; + dcterms:title "elevator count" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "elevator count" ; + skos:definition "The number of elevators within the built structure" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FreqCleanEnum ; - rdfs:label "Annually" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "escalator" ; + dcterms:title "escalator count" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "escalator count" ; + skos:definition "The number of escalators within the built structure" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FreqCleanEnum ; - rdfs:label "Daily" . - - a owl:Class, - nmdc:FreqCleanEnum ; - rdfs:label "Monthly" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ethylbenzene" ; + dcterms:title "ethylbenzene" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "ethylbenzene" ; + skos:definition "Concentration of ethylbenzene in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter, parts per million" . - a owl:Class, - nmdc:FreqCleanEnum ; - rdfs:label "Quarterly" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "exp_duct" ; + dcterms:title "exposed ductwork" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "exposed ductwork" ; + skos:definition "The amount of exposed ductwork in the room" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "square meter" . - a owl:Class, - nmdc:FreqCleanEnum ; - rdfs:label "Weekly" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "exp_pipe" ; + dcterms:title "exposed pipes" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "exposed pipes" ; + skos:definition "The number of exposed pipes in the room" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FreqCleanEnum ; - rdfs:label "other" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ext_door" ; + dcterms:title "exterior door count" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "exterior door count" ; + skos:definition "The number of exterior doors in the built structure" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FurnitureEnum ; - rdfs:label "cabinet" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ext_wall_orient" ; + dcterms:title "orientations of exterior wall" ; + rdfs:range nmdc:ExtWallOrientEnum ; + rdfs:subPropertyOf ; + skos:altLabel "orientations of exterior wall" ; + skos:definition "The orientation of the exterior wall" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FurnitureEnum ; - rdfs:label "chair" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ext_window_orient" ; + dcterms:title "orientations of exterior window" ; + rdfs:range nmdc:ExtWindowOrientEnum ; + rdfs:subPropertyOf ; + skos:altLabel "orientations of exterior window" ; + skos:definition "The compass direction the exterior window of the room is facing" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:FurnitureEnum ; - rdfs:label "desks" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "fao_class" ; + dcterms:title "soil_taxonomic/FAO classification" ; + rdfs:range nmdc:FaoClassEnum ; + rdfs:subPropertyOf ; + skos:altLabel "soil_taxonomic/FAO classification" ; + skos:definition "Soil classification from the FAO World Reference Database for Soil Resources. The list can be found at http://www.fao.org/nr/land/sols/soil/wrb-soil-maps/reference-groups" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:GenderRestroomEnum ; - rdfs:label "all gender" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "field" ; + dcterms:title "field name" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "field name" ; + skos:definition "Name of the hydrocarbon field (e.g. Albacora)" ; + skos:inScheme ; + nmdc:expected_value "name" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:GenderRestroomEnum ; - rdfs:label "female" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "fireplace_type" ; + dcterms:title "fireplace type" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "fireplace type" ; + skos:definition "A firebox with chimney" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:GenderRestroomEnum ; - rdfs:label "gender neurtral" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "floor_age" ; + dcterms:title "floor age" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "floor age" ; + skos:definition "The time period since installment of the carpet or flooring" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "years, weeks, days" . - a owl:Class, - nmdc:GenderRestroomEnum ; - rdfs:label "male" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "floor_area" ; + dcterms:title "floor area" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "floor area" ; + skos:definition "The area of the floor space within the room" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "square meter" . - a owl:Class, - nmdc:GenderRestroomEnum ; - rdfs:label "male and female" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "floor_cond" ; + dcterms:title "floor condition" ; + rdfs:range nmdc:FloorCondEnum ; + rdfs:subPropertyOf ; + skos:altLabel "floor condition" ; + skos:definition "The physical condition of the floor at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:GenderRestroomEnum ; - rdfs:label "unisex" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "floor_count" ; + dcterms:title "floor count" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "floor count" ; + skos:definition "The number of floors in the building, including basements and mechanical penthouse" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:GrowthHabitEnum ; - rdfs:label "erect" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "floor_finish_mat" ; + dcterms:title "floor finish material" ; + rdfs:range nmdc:FloorFinishMatEnum ; + rdfs:subPropertyOf ; + skos:altLabel "floor finish material" ; + skos:definition "The floor covering type; the finished surface that is walked on" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:GrowthHabitEnum ; - rdfs:label "prostrate" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "floor_struc" ; + dcterms:title "floor structure" ; + rdfs:range nmdc:FloorStrucEnum ; + rdfs:subPropertyOf ; + skos:altLabel "floor structure" ; + skos:definition "Refers to the structural elements and subfloor upon which the finish flooring is installed" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:GrowthHabitEnum ; - rdfs:label "semi-erect" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "floor_thermal_mass" ; + dcterms:title "floor thermal mass" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "floor thermal mass" ; + skos:definition "The ability of the floor to provide inertia against temperature fluctuations" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "joule per degree Celsius" . - a owl:Class, - nmdc:GrowthHabitEnum ; - rdfs:label "spreading" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "floor_water_mold" ; + dcterms:title "floor signs of water/mold" ; + rdfs:range nmdc:FloorWaterMoldEnum ; + rdfs:subPropertyOf ; + skos:altLabel "floor signs of water/mold" ; + skos:definition "Signs of the presence of mold or mildew in a room" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HandidnessEnum ; - rdfs:label "ambidexterity" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "fluor" ; + dcterms:title "fluorescence" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "fluorescence" ; + skos:definition "Raw or converted fluorescence of water" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram chlorophyll a per cubic meter, volts" . - a owl:Class, - nmdc:HandidnessEnum ; - rdfs:label "left handedness" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "freq_clean" ; + dcterms:title "frequency of cleaning" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "frequency of cleaning" ; + skos:definition "The number of times the sample location is cleaned. Frequency of cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually." ; + skos:inScheme ; + nmdc:expected_value "enumeration or {text}" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HandidnessEnum ; - rdfs:label "mixed-handedness" . - - a owl:Class, - nmdc:HandidnessEnum ; - rdfs:label "right handedness" . - - a owl:Class, - nmdc:HcProducedEnum ; - rdfs:label "Bitumen" . - - a owl:Class, - nmdc:HcProducedEnum ; - rdfs:label "Coalbed Methane" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "freq_cook" ; + dcterms:title "frequency of cooking" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "frequency of cooking" ; + skos:definition "The number of times a meal is cooked per week" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcProducedEnum ; - rdfs:label "Gas" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "furniture" ; + dcterms:title "furniture" ; + rdfs:range nmdc:FurnitureEnum ; + rdfs:subPropertyOf ; + skos:altLabel "furniture" ; + skos:definition "The types of furniture present in the sampled room" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcProducedEnum ; - rdfs:label "Gas-Condensate" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gender_restroom" ; + dcterms:title "gender of restroom" ; + rdfs:range nmdc:GenderRestroomEnum ; + rdfs:subPropertyOf ; + skos:altLabel "gender of restroom" ; + skos:definition "The gender type of the restroom" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcProducedEnum ; - rdfs:label "Oil" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "genetic_mod" ; + dcterms:title "genetic modification" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "genetic modification" ; + skos:definition "Genetic modifications of the genome of an organism, which may occur naturally by spontaneous mutation, or be introduced by some experimental means, e.g. specification of a transgene or the gene knocked-out or details of transient transfection" ; + skos:inScheme ; + nmdc:expected_value "PMID,DOI,url or free text" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcProducedEnum ; - rdfs:label "other" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "glucosidase_act" ; + dcterms:title "glucosidase activity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "glucosidase activity" ; + skos:definition "Measurement of glucosidase activity" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "mol per liter per hour" . - a owl:Class, - nmdc:HcrEnum ; - rdfs:label "Coalbed" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gravidity" ; + dcterms:title "gravidity" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "gravidity" ; + skos:definition "Whether or not subject is gravid, and if yes date due or date post-conception, specifying which is used" ; + skos:inScheme ; + nmdc:expected_value "gravidity status;timestamp" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcrEnum ; - rdfs:label "Gas Reservoir" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "growth_habit" ; + dcterms:title "growth habit" ; + rdfs:range nmdc:GrowthHabitEnum ; + rdfs:subPropertyOf ; + skos:altLabel "growth habit" ; + skos:definition "Characteristic shape, appearance or growth form of a plant species" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcrEnum ; - rdfs:label "Oil Reservoir" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "hall_count" ; + dcterms:title "hallway/corridor count" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "hallway/corridor count" ; + skos:definition "The total count of hallways and cooridors in the built structure" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcrEnum ; - rdfs:label "Oil Sand" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "handidness" ; + dcterms:title "handidness" ; + rdfs:range nmdc:HandidnessEnum ; + rdfs:subPropertyOf ; + skos:altLabel "handidness" ; + skos:definition "The handidness of the individual sampled" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcrEnum ; - rdfs:label "Shale" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has numeric value" ; + rdfs:range linkml:Double ; + skos:inScheme . - a owl:Class, - nmdc:HcrEnum ; - rdfs:label "Tight Gas Reservoir" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has raw value" ; + skos:inScheme . - a owl:Class, - nmdc:HcrEnum ; - rdfs:label "Tight Oil Reservoir" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has unit" ; + skos:definition "Example \"m\"" ; + skos:inScheme . - a owl:Class, - nmdc:HcrEnum ; - rdfs:label "other" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "hc_produced" ; + dcterms:title "hydrocarbon type produced" ; + rdfs:range nmdc:HcProducedEnum ; + rdfs:subPropertyOf ; + skos:altLabel "hydrocarbon type produced" ; + skos:definition "Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate, etc). If \"other\" is specified, please propose entry in \"additional info\" field" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Archean" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "hcr" ; + dcterms:title "hydrocarbon resource type" ; + rdfs:range nmdc:HcrEnum ; + rdfs:subPropertyOf ; + skos:altLabel "hydrocarbon resource type" ; + skos:definition "Main Hydrocarbon Resource type. The term \"Hydrocarbon Resource\" HCR defined as a natural environmental feature containing large amounts of hydrocarbons at high concentrations potentially suitable for commercial exploitation. This term should not be confused with the Hydrocarbon Occurrence term which also includes hydrocarbon-rich environments with currently limited commercial interest such as seeps, outcrops, gas hydrates etc. If \"other\" is specified, please propose entry in \"additional info\" field" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Cambrian" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "hcr_fw_salinity" ; + dcterms:title "formation water salinity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "formation water salinity" ; + skos:definition "Original formation water salinity (prior to secondary recovery e.g. Waterflooding) expressed as TDS" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Carboniferous" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "hcr_geol_age" ; + dcterms:title "hydrocarbon resource geological age" ; + rdfs:range nmdc:HcrGeolAgeEnum ; + rdfs:subPropertyOf ; + skos:altLabel "hydrocarbon resource geological age" ; + skos:definition "Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If \"other\" is specified, please propose entry in \"additional info\" field" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Cenozoic" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "hcr_pressure" ; + dcterms:title "hydrocarbon resource original pressure" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "hydrocarbon resource original pressure" ; + skos:definition "Original pressure of the hydrocarbon resource" ; + skos:inScheme ; + nmdc:expected_value "measurement value range" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "atmosphere, kilopascal" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Cretaceous" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "hcr_temp" ; + dcterms:title "hydrocarbon resource original temperature" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "hydrocarbon resource original temperature" ; + skos:definition "Original temperature of the hydrocarbon resource" ; + skos:inScheme ; + nmdc:expected_value "measurement value range" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "degree Celsius" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Devonian" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "heat_deliv_loc" ; + dcterms:title "heating delivery locations" ; + rdfs:range nmdc:HeatDelivLocEnum ; + rdfs:subPropertyOf ; + skos:altLabel "heating delivery locations" ; + skos:definition "The location of heat delivery within the room" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Jurassic" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "heat_sys_deliv_meth" ; + dcterms:title "heating system delivery method" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf ; + skos:altLabel "heating system delivery method" ; + skos:definition "The method by which the heat is delivered through the system" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Mesozoic" . - - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Neogene" . - - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Ordovician" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "heat_system_id" ; + dcterms:title "heating system identifier" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "heating system identifier" ; + skos:definition "The heating system identifier" ; + skos:inScheme ; + nmdc:expected_value "unique identifier" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Paleogene" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "height_carper_fiber" ; + dcterms:title "height carpet fiber mat" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "height carpet fiber mat" ; + skos:definition "The average carpet fiber height in the indoor environment" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "centimeter" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Paleozoic" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "horizon_meth" ; + dcterms:title "soil horizon method" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "soil horizon method" ; + skos:definition "Reference or method used in determining the horizon" ; + skos:inScheme ; + nmdc:expected_value "PMID,DOI or url" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Permian" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_age" ; + dcterms:title "host age" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "host age" ; + skos:definition "Age of host at the time of sampling; relevant scale depends on species and study, e.g. Could be seconds for amoebae or centuries for trees" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "year, day, hour" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Precambrian" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_body_habitat" ; + dcterms:title "host body habitat" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "host body habitat" ; + skos:definition "Original body habitat where the sample was obtained from" ; + skos:inScheme ; + nmdc:expected_value "free text" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Proterozoic" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_body_product" ; + dcterms:title "host body product" ; + rdfs:range nmdc:ControlledTermValue ; + rdfs:subPropertyOf ; + skos:altLabel "host body product" ; + skos:definition "Substance produced by the body, e.g. Stool, mucus, where the sample was obtained from. For foundational model of anatomy ontology (fma) or Uber-anatomy ontology (UBERON) terms, please see https://www.ebi.ac.uk/ols/ontologies/fma or https://www.ebi.ac.uk/ols/ontologies/uberon" ; + skos:inScheme ; + nmdc:expected_value "FMA or UBERON" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Silurian" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_body_site" ; + dcterms:title "host body site" ; + rdfs:range nmdc:ControlledTermValue ; + rdfs:subPropertyOf ; + skos:altLabel "host body site" ; + skos:definition "Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). For foundational model of anatomy ontology (fma) (v 4.11.0) or Uber-anatomy ontology (UBERON) (v releases/2014-06-15) terms, please see http://purl.bioontology.org/ontology/FMA or http://purl.bioontology.org/ontology/UBERON" ; + skos:inScheme ; + nmdc:expected_value "FMA or UBERON" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "Triassic" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_body_temp" ; + dcterms:title "host body temperature" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "host body temperature" ; + skos:definition "Core body temperature of the host when sample was collected" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "degree Celsius" . - a owl:Class, - nmdc:HcrGeolAgeEnum ; - rdfs:label "other" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_color" ; + dcterms:title "host color" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "host color" ; + skos:definition "The color of host" ; + skos:inScheme ; + nmdc:expected_value "color" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HeatCoolTypeEnum ; - rdfs:label "forced air system" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_common_name" ; + dcterms:title "host common name" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "host common name" ; + skos:definition "Common name of the host." ; + skos:inScheme ; + nmdc:expected_value "common name" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HeatCoolTypeEnum ; - rdfs:label "heat pump" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_disease_stat" ; + dcterms:title "host disease status" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "host disease status" ; + skos:definition "List of diseases with which the host has been diagnosed; can include multiple diagnoses. The value of the field depends on host; for humans the terms should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org, non-human host diseases are free text" ; + skos:inScheme ; + nmdc:expected_value "disease name or Disease Ontology term" . - a owl:Class, - nmdc:HeatCoolTypeEnum ; - rdfs:label "radiant system" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_dry_mass" ; + dcterms:title "host dry mass" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "host dry mass" ; + skos:definition "Measurement of dry mass" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "kilogram, gram" . - a owl:Class, - nmdc:HeatCoolTypeEnum ; - rdfs:label "steam forced heat" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_genotype" ; + dcterms:title "host genotype" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "host genotype" ; + skos:definition "Observed genotype" ; + skos:inScheme ; + nmdc:expected_value "genotype" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HeatCoolTypeEnum ; - rdfs:label "wood stove" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_growth_cond" ; + dcterms:title "host growth conditions" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "host growth conditions" ; + skos:definition "Literature reference giving growth conditions of the host" ; + skos:inScheme ; + nmdc:expected_value "PMID,DOI,url or free text" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HeatDelivLocEnum ; - rdfs:label "east" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_height" ; + dcterms:title "host height" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "host height" ; + skos:definition "The height of subject" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "centimeter, millimeter, meter" . - a owl:Class, - nmdc:HeatDelivLocEnum ; - rdfs:label "north" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_length" ; + dcterms:title "host length" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "host length" ; + skos:definition "The length of subject" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "centimeter, millimeter, meter" . - a owl:Class, - nmdc:HeatDelivLocEnum ; - rdfs:label "south" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_life_stage" ; + dcterms:title "host life stage" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "host life stage" ; + skos:definition "Description of life stage of host" ; + skos:inScheme ; + nmdc:expected_value "stage" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HeatDelivLocEnum ; - rdfs:label "west" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_phenotype" ; + dcterms:title "host phenotype" ; + rdfs:range nmdc:ControlledTermValue ; + rdfs:subPropertyOf ; + skos:altLabel "host phenotype" ; + skos:definition "Phenotype of human or other host. For phenotypic quality ontology (pato) (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato. For Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP" ; + skos:inScheme ; + nmdc:expected_value "PATO or HP" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HostSexEnum ; - rdfs:label "female" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_sex" ; + dcterms:title "host sex" ; + rdfs:range nmdc:HostSexEnum ; + rdfs:subPropertyOf ; + skos:altLabel "host sex" ; + skos:definition "Gender or physical sex of the host." ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HostSexEnum ; - rdfs:label "hermaphrodite" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_shape" ; + dcterms:title "host shape" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "host shape" ; + skos:definition "Morphological shape of host" ; + skos:inScheme ; + nmdc:expected_value "shape" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HostSexEnum ; - rdfs:label "male" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_subject_id" ; + dcterms:title "host subject id" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "host subject id" ; + skos:definition "A unique identifier by which each subject can be referred to, de-identified." ; + skos:inScheme ; + nmdc:expected_value "unique identifier" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:HostSexEnum ; - rdfs:label "neuter" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_substrate" ; + dcterms:title "host substrate" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "host substrate" ; + skos:definition "The growth substrate of the host." ; + skos:inScheme ; + nmdc:expected_value "substrate name" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:IndoorSpaceEnum ; - rdfs:label "bathroom" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_tot_mass" ; + dcterms:title "host total mass" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "host total mass" ; + skos:definition "Total mass of the host at collection, the unit depends on host" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "kilogram, gram" . - a owl:Class, - nmdc:IndoorSpaceEnum ; - rdfs:label "bedroom" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_wet_mass" ; + dcterms:title "host wet mass" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "host wet mass" ; + skos:definition "Measurement of wet mass" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "kilogram, gram" . - a owl:Class, - nmdc:IndoorSpaceEnum ; - rdfs:label "elevator" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "humidity" ; + dcterms:title "humidity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "humidity" ; + skos:definition "Amount of water vapour in the air, at the time of sampling" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "gram per cubic meter" . - a owl:Class, - nmdc:IndoorSpaceEnum ; - rdfs:label "foyer" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "indoor_space" ; + dcterms:title "indoor space" ; + rdfs:range nmdc:IndoorSpaceEnum ; + rdfs:subPropertyOf ; + skos:altLabel "indoor space" ; + skos:definition "A distinguishable space within a structure, the purpose for which discrete areas of a building is used" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:IndoorSpaceEnum ; - rdfs:label "hallway" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "indoor_surf" ; + dcterms:title "indoor surface" ; + rdfs:range nmdc:IndoorSurfEnum ; + rdfs:subPropertyOf ; + skos:altLabel "indoor surface" ; + skos:definition "Type of indoor surface" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:IndoorSpaceEnum ; - rdfs:label "kitchen" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "indust_eff_percent" ; + dcterms:title "industrial effluent percent" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "industrial effluent percent" ; + skos:definition "Percentage of industrial effluents received by wastewater treatment plant" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "percentage" . - a owl:Class, - nmdc:IndoorSpaceEnum ; - rdfs:label "locker room" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "inside_lux" ; + dcterms:title "inside lux light" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "inside lux light" ; + skos:definition "The recorded value at sampling time (power density)" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "kilowatt per square metre" . - a owl:Class, - nmdc:IndoorSpaceEnum ; - rdfs:label "office" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "int_wall_cond" ; + dcterms:title "interior wall condition" ; + rdfs:range nmdc:IntWallCondEnum ; + rdfs:subPropertyOf ; + skos:altLabel "interior wall condition" ; + skos:definition "The physical condition of the wall at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:IndoorSurfEnum ; - rdfs:label "cabinet" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "iw_bt_date_well" ; + dcterms:title "injection water breakthrough date of specific well" ; + rdfs:range nmdc:TimestampValue ; + rdfs:subPropertyOf ; + skos:altLabel "injection water breakthrough date of specific well" ; + skos:definition "Injection water breakthrough date per well following a secondary and/or tertiary recovery" ; + skos:inScheme ; + nmdc:expected_value "timestamp" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:IndoorSurfEnum ; - rdfs:label "ceiling" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "iwf" ; + dcterms:title "injection water fraction" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "injection water fraction" ; + skos:definition "Proportion of the produced fluids derived from injected water at the time of sampling. (e.g. 87%)" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "percent" . - a owl:Class, - nmdc:IndoorSurfEnum ; - rdfs:label "counter top" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "last_clean" ; + dcterms:title "last time swept/mopped/vacuumed" ; + rdfs:range nmdc:TimestampValue ; + rdfs:subPropertyOf ; + skos:altLabel "last time swept/mopped/vacuumed" ; + skos:definition "The last time the floor was cleaned (swept, mopped, vacuumed)" ; + skos:inScheme ; + nmdc:expected_value "timestamp" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:IndoorSurfEnum ; - rdfs:label "door" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "lat_lon" ; + dcterms:title "geographic location (latitude and longitude)" ; + rdfs:range nmdc:GeolocationValue ; + rdfs:subPropertyOf ; + skos:altLabel "geographic location (latitude and longitude)" ; + skos:definition "The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system" ; + skos:inScheme ; + nmdc:expected_value "decimal degrees, limit to 8 decimal points" . - a owl:Class, - nmdc:IndoorSurfEnum ; - rdfs:label "shelving" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "light_intensity" ; + dcterms:title "light intensity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "light intensity" ; + skos:definition "Measurement of light intensity" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "lux" . - a owl:Class, - nmdc:IndoorSurfEnum ; - rdfs:label "vent cover" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "link_addit_analys" ; + dcterms:title "links to additional analysis" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "links to additional analysis" ; + skos:definition "Link to additional analysis results performed on the sample" ; + skos:inScheme ; + nmdc:expected_value "PMID,DOI or url" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:IndoorSurfEnum ; - rdfs:label "wall" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "link_class_info" ; + dcterms:title "link to classification information" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "link to classification information" ; + skos:definition "Link to digitized soil maps or other soil classification information" ; + skos:inScheme ; + nmdc:expected_value "PMID,DOI or url" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:IndoorSurfEnum ; - rdfs:label "window" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "link_climate_info" ; + dcterms:title "link to climate information" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "link to climate information" ; + skos:definition "Link to climate resource" ; + skos:inScheme ; + nmdc:expected_value "PMID,DOI or url" ; + nmdc:occurrence "1" . -nmdc:InstrumentMixin a owl:Class, - linkml:ClassDefinition ; - rdfs:label "InstrumentMixin" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:name ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:name ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:DeviceEnum ; - owl:onProperty nmdc:name ] ; - skos:altLabel "device" ; - skos:exactMatch OBI:0000485 ; - skos:inScheme nmdc:core . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "lithology" ; + dcterms:title "lithology" ; + rdfs:range nmdc:LithologyEnum ; + rdfs:subPropertyOf ; + skos:altLabel "lithology" ; + skos:definition "Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination). If \"other\" is specified, please propose entry in \"additional info\" field" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:InstrumentModelEnum ; - rdfs:label "Orbitrap" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "local_class_meth" ; + dcterms:title "soil_taxonomic/local classification method" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "soil_taxonomic/local classification method" ; + skos:definition "Reference or method used in determining the local soil classification" ; + skos:inScheme ; + nmdc:expected_value "PMID,DOI or url" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:InstrumentModelEnum ; - rdfs:label "PIPETMAN F144059M" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "magnesium" ; + dcterms:title "magnesium" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "magnesium" ; + skos:definition "Concentration of magnesium in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "mole per liter, milligram per liter, parts per million, micromole per kilogram" . - a owl:Class, - nmdc:InstrumentModelEnum ; - rdfs:label "VortexGenie2" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "max_occup" ; + dcterms:title "maximum occupancy" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "maximum occupancy" ; + skos:definition "The maximum amount of people allowed in the indoor environment" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:InstrumentVendorEnum ; - rdfs:label "Gilson" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "mean_frict_vel" ; + dcterms:title "mean friction velocity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "mean friction velocity" ; + skos:definition "Measurement of mean friction velocity" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "meter per second" . - a owl:Class, - nmdc:InstrumentVendorEnum ; - rdfs:label "PerkinElmer" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "mean_peak_frict_vel" ; + dcterms:title "mean peak friction velocity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "mean peak friction velocity" ; + skos:definition "Measurement of mean peak friction velocity" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "meter per second" . - a owl:Class, - nmdc:InstrumentVendorEnum ; - rdfs:label "ScientificIndustries" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "mech_struc" ; + dcterms:title "mechanical structure" ; + rdfs:range nmdc:MechStrucEnum ; + rdfs:subPropertyOf ; + skos:altLabel "mechanical structure" ; + skos:definition "mechanical structure: a moving structure" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:InstrumentVendorEnum ; - rdfs:label "ThermoFisher" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "methane" ; + dcterms:title "methane" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "methane" ; + skos:definition "Methane (gas) amount or concentration at the time of sampling" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter, parts per billion, parts per million" . - a owl:Class, - nmdc:InstrumentVendorEnum ; - rdfs:label "VWR" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "micro_biomass_meth" ; + dcterms:title "microbial biomass method" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf ; + skos:altLabel "microbial biomass method" ; + skos:definition "Reference or method used in determining microbial biomass" ; + skos:inScheme ; + nmdc:expected_value "PMID,DOI or url" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:IntWallCondEnum ; - rdfs:label "damaged" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "microbial_biomass" ; + dcterms:title "microbial biomass" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "microbial biomass" ; + skos:definition "The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer. If you keep this, you would need to have correction factors used for conversion to the final units" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "ton, kilogram, gram per kilogram soil" . - a owl:Class, - nmdc:IntWallCondEnum ; - rdfs:label "needs repair" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "nitrate" ; + dcterms:title "nitrate" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "nitrate" ; + skos:definition "Concentration of nitrate in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . - a owl:Class, - nmdc:IntWallCondEnum ; - rdfs:label "new" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "nitrite" ; + dcterms:title "nitrite" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "nitrite" ; + skos:definition "Concentration of nitrite in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . - a owl:Class, - nmdc:IntWallCondEnum ; - rdfs:label "rupture" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "nitro" ; + dcterms:title "nitrogen" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "nitrogen" ; + skos:definition "Concentration of nitrogen (total)" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter" . - a owl:Class, - nmdc:IntWallCondEnum ; - rdfs:label "visible wear" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "number_pets" ; + dcterms:title "number of pets" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "number of pets" ; + skos:definition "The number of pets residing in the sampled space" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:JgiContTypeEnum ; - rdfs:label "plate" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "number_plants" ; + dcterms:title "number of houseplants" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "number of houseplants" ; + skos:definition "The number of plant(s) in the sampling space" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:JgiContTypeEnum ; - rdfs:label "tube" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "number_resident" ; + dcterms:title "number of residents" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "number of residents" ; + skos:definition "The number of individuals currently occupying in the sampling location" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" . -nmdc:LibraryPreparation a owl:Class, - linkml:ClassDefinition ; - rdfs:label "LibraryPreparation" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:has_input ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:has_output ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:has_output ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:has_input ], - nmdc:BiosampleProcessing ; - skos:altLabel "LibraryConstruction" ; - skos:closeMatch OBI:0000711 ; - skos:exactMatch nmdc:LibraryPreparation ; - skos:inScheme nmdc:nmdc ; - skos:note "OBI:0000711 specifies a DNA input (but not ONLY a DNA input)" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "occup_density_samp" ; + dcterms:title "occupant density at sampling" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "occupant density at sampling" ; + skos:definition "Average number of occupants at time of sampling per square footage" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:LibraryTypeEnum ; - rdfs:label "DNA" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "occup_document" ; + dcterms:title "occupancy documentation" ; + rdfs:range nmdc:OccupDocumentEnum ; + rdfs:subPropertyOf ; + skos:altLabel "occupancy documentation" ; + skos:definition "The type of documentation of occupancy" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:LibraryTypeEnum ; - rdfs:label "RNA" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "occup_samp" ; + dcterms:title "occupancy at sampling" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "occupancy at sampling" ; + skos:definition "Number of occupants present at time of sample within the given space" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:LightTypeEnum ; - rdfs:label "desk lamp" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "org_carb" ; + dcterms:title "organic carbon" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "organic carbon" ; + skos:definition "Concentration of organic carbon" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter" . - a owl:Class, - nmdc:LightTypeEnum ; - rdfs:label "electric light" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "org_count_qpcr_info" ; + dcterms:title "organism count qPCR information" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf ; + skos:altLabel "organism count qPCR information" ; + skos:definition "If qpcr was used for the cell count, the target gene name, the primer sequence and the cycling conditions should also be provided. (Example: 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; 30 cycles)" ; + skos:inScheme ; + nmdc:expected_value "gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes; total cycles" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "number of cells per gram (or ml or cm^2)" . - a owl:Class, - nmdc:LightTypeEnum ; - rdfs:label "flourescent lights" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "org_matter" ; + dcterms:title "organic matter" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "organic matter" ; + skos:definition "Concentration of organic matter" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "microgram per liter" . - a owl:Class, - nmdc:LightTypeEnum ; - rdfs:label "natural light" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "org_nitro" ; + dcterms:title "organic nitrogen" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "organic nitrogen" ; + skos:definition "Concentration of organic nitrogen" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "microgram per liter" . - a owl:Class, - nmdc:LightTypeEnum ; - rdfs:label "none" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "owc_tvdss" ; + dcterms:title "oil water contact depth" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "oil water contact depth" ; + skos:definition "Depth of the original oil water contact (OWC) zone (average) (m TVDSS)" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "meter" . - a owl:Class, - nmdc:LithologyEnum ; - rdfs:label "Basement" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "oxygen" ; + dcterms:title "oxygen" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "oxygen" ; + skos:definition "Oxygen (gas) amount or concentration at the time of sampling" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter, parts per million" . - a owl:Class, - nmdc:LithologyEnum ; - rdfs:label "Chalk" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "part_org_carb" ; + dcterms:title "particulate organic carbon" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "particulate organic carbon" ; + skos:definition "Concentration of particulate organic carbon" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "microgram per liter" . - a owl:Class, - nmdc:LithologyEnum ; - rdfs:label "Chert" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "part_org_nitro" ; + dcterms:title "particulate organic nitrogen" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "particulate organic nitrogen" ; + skos:definition "Concentration of particulate organic nitrogen" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "microgram per liter, micromole per liter" . - a owl:Class, - nmdc:LithologyEnum ; - rdfs:label "Coal" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "permeability" ; + dcterms:title "permeability" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "permeability" ; + skos:definition "Measure of the ability of a hydrocarbon resource to allow fluids to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences))" ; + skos:inScheme ; + nmdc:expected_value "measurement value range" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "mD" . - a owl:Class, - nmdc:LithologyEnum ; - rdfs:label "Conglomerate" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "petroleum_hydrocarb" ; + dcterms:title "petroleum hydrocarbon" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "petroleum hydrocarbon" ; + skos:definition "Concentration of petroleum hydrocarbon" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter" . - a owl:Class, - nmdc:LithologyEnum ; - rdfs:label "Diatomite" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ph" ; + dcterms:title "pH" ; + rdfs:range linkml:Double ; + rdfs:subPropertyOf ; + skos:altLabel "pH" ; + skos:definition "Ph measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:LithologyEnum ; - rdfs:label "Dolomite" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "photon_flux" ; + dcterms:title "photon flux" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "photon flux" ; + skos:definition "Measurement of photon flux" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "number of photons per second per unit area" . - a owl:Class, - nmdc:LithologyEnum ; - rdfs:label "Limestone" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "plant_growth_med" ; + dcterms:title "plant growth medium" ; + rdfs:range nmdc:ControlledTermValue ; + rdfs:subPropertyOf ; + skos:altLabel "plant growth medium" ; + skos:definition "Specification of the media for growing the plants or tissue cultured samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in vitro liquid culture medium. Recommended value is a specific value from EO:plant growth medium (follow this link for terms http://purl.obolibrary.org/obo/EO_0007147) or other controlled vocabulary" ; + skos:inScheme ; + nmdc:expected_value "EO or enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:LithologyEnum ; - rdfs:label "Sandstone" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "plant_product" ; + dcterms:title "plant product" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "plant product" ; + skos:definition "Substance produced by the plant, where the sample was obtained from" ; + skos:inScheme ; + nmdc:expected_value "product name" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:LithologyEnum ; - rdfs:label "Shale" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "plant_sex" ; + dcterms:title "plant sex" ; + rdfs:range nmdc:PlantSexEnum ; + rdfs:subPropertyOf ; + skos:altLabel "plant sex" ; + skos:definition "Sex of the reproductive parts on the whole plant, e.g. pistillate, staminate, monoecieous, hermaphrodite." ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:LithologyEnum ; - rdfs:label "Siltstone" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "plant_struc" ; + dcterms:title "plant structure" ; + rdfs:range nmdc:ControlledTermValue ; + rdfs:subPropertyOf ; + skos:altLabel "plant structure" ; + skos:definition "Name of plant structure the sample was obtained from; for Plant Ontology (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO, e.g. petiole epidermis (PO_0000051). If an individual flower is sampled, the sex of it can be recorded here." ; + skos:inScheme ; + nmdc:expected_value "PO" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:LithologyEnum ; - rdfs:label "Volcanic" . - - a owl:Class, - nmdc:LithologyEnum ; - rdfs:label "other" . - -nmdc:MaterialContainer a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MaterialContainer" ; - dcterms:title "Material container" ; - skos:inScheme nmdc:sample_prep . - - a owl:Class, - nmdc:MechStrucEnum ; - rdfs:label "boat" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "pool_dna_extracts" ; + dcterms:title "pooling of DNA extracts (if done)" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "pooling of DNA extracts (if done)" ; + skos:definition "Indicate whether multiple DNA extractions were mixed. If the answer yes, the number of extracts that were pooled should be given" ; + skos:inScheme ; + nmdc:expected_value "pooling status;number of pooled extracts" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:MechStrucEnum ; - rdfs:label "bus" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "porosity" ; + dcterms:title "porosity" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "porosity" ; + skos:definition "Porosity of deposited sediment is volume of voids divided by the total volume of sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value or range" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "percentage" . - a owl:Class, - nmdc:MechStrucEnum ; - rdfs:label "car" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "potassium" ; + dcterms:title "potassium" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "potassium" ; + skos:definition "Concentration of potassium in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter, parts per million" . - a owl:Class, - nmdc:MechStrucEnum ; - rdfs:label "carriage" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "pour_point" ; + dcterms:title "pour point" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "pour point" ; + skos:definition "Temperature at which a liquid becomes semi solid and loses its flow characteristics. In crude oil a high¬†pour point¬†is generally associated with a high paraffin content, typically found in crude deriving from a larger proportion of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "degree Celsius" . - a owl:Class, - nmdc:MechStrucEnum ; - rdfs:label "coach" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "pre_treatment" ; + dcterms:title "pre-treatment" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "pre-treatment" ; + skos:definition "The process of pre-treatment removes materials that can be easily collected from the raw wastewater" ; + skos:inScheme ; + nmdc:expected_value "pre-treatment type" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:MechStrucEnum ; - rdfs:label "elevator" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "pres_animal_insect" ; + dcterms:title "presence of pets, animals, or insects" ; + rdfs:range [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:String [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^(cat|dog|rodent|snake|other);\\d+$" ] ) ] ) ] ; + rdfs:subPropertyOf ; + skos:altLabel "presence of pets, animals, or insects" ; + skos:definition "The type and number of animals or insects present in the sampling space." ; + skos:inScheme ; + nmdc:expected_value "enumeration;count" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:MechStrucEnum ; - rdfs:label "escalator" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "pressure" ; + dcterms:title "pressure" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "pressure" ; + skos:definition "Pressure to which the sample is subject to, in atmospheres" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "atmosphere" . - a owl:Class, - nmdc:MechStrucEnum ; - rdfs:label "subway" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "prev_land_use_meth" ; + dcterms:title "history/previous land use method" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf ; + skos:altLabel "history/previous land use method" ; + skos:definition "Reference or method used in determining previous land use and dates" ; + skos:inScheme ; + nmdc:expected_value "PMID,DOI or url" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:MechStrucEnum ; - rdfs:label "train" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "previous_land_use" ; + dcterms:title "history/previous land use" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "history/previous land use" ; + skos:definition "Previous land use and dates" ; + skos:inScheme ; + nmdc:expected_value "land use name;date" ; + nmdc:occurrence "1" . -nmdc:MetagenomeAnnotationActivity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MetagenomeAnnotationActivity" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - nmdc:WorkflowExecutionActivity ; - skos:definition "A workflow execution activity that provides functional and structural annotation of assembled metagenome contigs" ; - skos:inScheme nmdc:workflow_execution_activity . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "primary_prod" ; + dcterms:title "primary production" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "primary production" ; + skos:definition "Measurement of primary production, generally measured as isotope uptake" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per cubic meter per day, gram per square meter per day" . - a owl:Class, - nmdc:OccupDocumentEnum ; - rdfs:label "automated count" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "primary_treatment" ; + dcterms:title "primary treatment" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "primary treatment" ; + skos:definition "The process to produce both a generally homogeneous liquid capable of being treated biologically and a sludge that can be separately treated or processed" ; + skos:inScheme ; + nmdc:expected_value "primary treatment type" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:OccupDocumentEnum ; - rdfs:label "estimate" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "prod_rate" ; + dcterms:title "production rate" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "production rate" ; + skos:definition "Oil and/or gas production rates per well (e.g. 524 m3 / day)" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "cubic meter per day" . - a owl:Class, - nmdc:OccupDocumentEnum ; - rdfs:label "manual count" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "prod_start_date" ; + dcterms:title "production start date" ; + rdfs:range nmdc:TimestampValue ; + rdfs:subPropertyOf ; + skos:altLabel "production start date" ; + skos:definition "Date of field's first production" ; + skos:inScheme ; + nmdc:expected_value "timestamp" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:OccupDocumentEnum ; - rdfs:label "videos" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "profile_position" ; + dcterms:title "profile position" ; + rdfs:range nmdc:ProfilePositionEnum ; + rdfs:subPropertyOf ; + skos:altLabel "profile position" ; + skos:definition "Cross-sectional position in the hillslope where sample was collected.sample area position in relation to surrounding areas" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:OrganismCountEnum ; - rdfs:label "ATP" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "quad_pos" ; + dcterms:title "quadrant position" ; + rdfs:range nmdc:QuadPosEnum ; + rdfs:subPropertyOf ; + skos:altLabel "quadrant position" ; + skos:definition "The quadrant position of the sampling room within the building" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:OrganismCountEnum ; - rdfs:label "MPN" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "reactor_type" ; + dcterms:title "reactor type" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "reactor type" ; + skos:definition "Anaerobic digesters can be designed and engineered to operate using a number of different process configurations, as batch or continuous, mesophilic, high solid or low solid, and single stage or multistage" ; + skos:inScheme ; + nmdc:expected_value "reactor type name" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:OrganismCountEnum ; - rdfs:label "other" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "redox_potential" ; + dcterms:title "redox potential" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "redox potential" ; + skos:definition "Redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "millivolt" . - a owl:Class, - nmdc:OxyStatSampEnum ; - rdfs:label "aerobic" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "rel_air_humidity" ; + dcterms:title "relative air humidity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "relative air humidity" ; + skos:definition "Partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "percentage" . - a owl:Class, - nmdc:OxyStatSampEnum ; - rdfs:label "anaerobic" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "rel_humidity_out" ; + dcterms:title "outside relative humidity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "outside relative humidity" ; + skos:definition "The recorded outside relative humidity value at the time of sampling" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "gram of air, kilogram of air" . - a owl:Class, - nmdc:OxyStatSampEnum ; - rdfs:label "other" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "rel_samp_loc" ; + dcterms:title "relative sampling location" ; + rdfs:range nmdc:RelSampLocEnum ; + rdfs:subPropertyOf ; + skos:altLabel "relative sampling location" ; + skos:definition "The sampling location within the train car" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantGrowthMedEnum ; - rdfs:label "other artificial liquid medium" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "reservoir" ; + dcterms:title "reservoir name" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "reservoir name" ; + skos:definition "Name of the reservoir (e.g. Carapebus)" ; + skos:inScheme ; + nmdc:expected_value "name" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantGrowthMedEnum ; - rdfs:label "other artificial solid medium" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "resins_pc" ; + dcterms:title "resins wt%" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "resins wt%" ; + skos:definition "Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; + skos:inScheme ; + nmdc:expected_value "name;measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "percent" . - a owl:Class, - nmdc:PlantGrowthMedEnum ; - rdfs:label "peat moss" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_air_exch_rate" ; + dcterms:title "room air exchange rate" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "room air exchange rate" ; + skos:definition "The rate at which outside air replaces indoor air in a given space" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "liter per hour" . - a owl:Class, - nmdc:PlantGrowthMedEnum ; - rdfs:label "perlite" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_architec_elem" ; + dcterms:title "room architectural elements" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf ; + skos:altLabel "room architectural elements" ; + skos:definition "The unique details and component parts that, together, form the architecture of a distinguisahable space within a built structure" ; + skos:inScheme ; + nmdc:expected_value "free text" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantGrowthMedEnum ; - rdfs:label "pumice" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_condt" ; + dcterms:title "room condition" ; + rdfs:range nmdc:RoomCondtEnum ; + rdfs:subPropertyOf ; + skos:altLabel "room condition" ; + skos:definition "The condition of the room at the time of sampling" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantGrowthMedEnum ; - rdfs:label "sand" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_connected" ; + dcterms:title "rooms connected by a doorway" ; + rdfs:range nmdc:RoomConnectedEnum ; + rdfs:subPropertyOf ; + skos:altLabel "rooms connected by a doorway" ; + skos:definition "List of rooms connected to the sampling room by a doorway" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantGrowthMedEnum ; - rdfs:label "soil" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_count" ; + dcterms:title "room count" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "room count" ; + skos:definition "The total count of rooms in the built structure including all room types" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantGrowthMedEnum ; - rdfs:label "vermiculite" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_dim" ; + dcterms:title "room dimensions" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "room dimensions" ; + skos:definition "The length, width and height of sampling room" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "meter" . - a owl:Class, - nmdc:PlantGrowthMedEnum ; - rdfs:label "water" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_door_dist" ; + dcterms:title "room door distance" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "room door distance" ; + skos:definition "Distance between doors (meters) in the hallway between the sampling room and adjacent rooms" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "meter" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Androdioecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_door_share" ; + dcterms:title "rooms that share a door with sampling room" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "rooms that share a door with sampling room" ; + skos:definition "List of room(s) (room number, room name) sharing a door with the sampling room" ; + skos:inScheme ; + nmdc:expected_value "room name;room number" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Androecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_hallway" ; + dcterms:title "rooms that are on the same hallway" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "rooms that are on the same hallway" ; + skos:definition "List of room(s) (room number, room name) located in the same hallway as sampling room" ; + skos:inScheme ; + nmdc:expected_value "room name;room number" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Androgynomonoecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_loc" ; + dcterms:title "room location in building" ; + rdfs:range nmdc:RoomLocEnum ; + rdfs:subPropertyOf ; + skos:altLabel "room location in building" ; + skos:definition "The position of the room within the building" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Androgynous" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_moist_dam_hist" ; + dcterms:title "room moisture damage or mold history" ; + rdfs:range linkml:Integer ; + rdfs:subPropertyOf ; + skos:altLabel "room moisture damage or mold history" ; + skos:definition "The history of moisture damage or mold in the past 12 months. Number of events of moisture damage or mold observed" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Andromonoecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_net_area" ; + dcterms:title "room net area" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "room net area" ; + skos:definition "The net floor area of sampling room. Net area excludes wall thicknesses" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "square feet, square meter" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Bisexual" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_occup" ; + dcterms:title "room occupancy" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "room occupancy" ; + skos:definition "Count of room occupancy at time of sampling" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Dichogamous" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_samp_pos" ; + dcterms:title "room sampling position" ; + rdfs:range nmdc:RoomSampPosEnum ; + rdfs:subPropertyOf ; + skos:altLabel "room sampling position" ; + skos:definition "The horizontal sampling position in the room relative to architectural elements" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Diclinous" . - - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Dioecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_type" ; + dcterms:title "room type" ; + rdfs:range nmdc:RoomTypeEnum ; + rdfs:subPropertyOf ; + skos:altLabel "room type" ; + skos:definition "The main purpose or activity of the sampling room. A room is any distinguishable space within a structure" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Gynodioecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_vol" ; + dcterms:title "room volume" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "room volume" ; + skos:definition "Volume of sampling room" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "cubic feet, cubic meter" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Gynoecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_wall_share" ; + dcterms:title "rooms that share a wall with sampling room" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "rooms that share a wall with sampling room" ; + skos:definition "List of room(s) (room number, room name) sharing a wall with the sampling room" ; + skos:inScheme ; + nmdc:expected_value "room name;room number" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Gynomonoecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "room_window_count" ; + dcterms:title "room window count" ; + rdfs:range linkml:Integer ; + rdfs:subPropertyOf ; + skos:altLabel "room window count" ; + skos:definition "Number of windows in the room" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Hermaphroditic" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "root_cond" ; + dcterms:title "rooting conditions" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "rooting conditions" ; + skos:definition "Relevant rooting conditions such as field plot size, sowing density, container dimensions, number of plants per container." ; + skos:inScheme ; + nmdc:expected_value "PMID,DOI,url or free text" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Imperfect" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "root_med_carbon" ; + dcterms:title "rooting medium carbon" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "rooting medium carbon" ; + skos:definition "Source of organic carbon in the culture rooting medium; e.g. sucrose." ; + skos:inScheme ; + nmdc:expected_value "carbon source name;measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Monoclinous" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "root_med_macronutr" ; + dcterms:title "rooting medium macronutrients" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "rooting medium macronutrients" ; + skos:definition "Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S); e.g. KH2PO4 (170¬†mg/L)." ; + skos:inScheme ; + nmdc:expected_value "macronutrient name;measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Monoecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "root_med_micronutr" ; + dcterms:title "rooting medium micronutrients" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "rooting medium micronutrients" ; + skos:definition "Measurement of the culture rooting medium micronutrients (Fe, Mn, Zn, B, Cu, Mo); e.g. H3BO3 (6.2¬†mg/L)." ; + skos:inScheme ; + nmdc:expected_value "micronutrient name;measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Perfect" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "root_med_ph" ; + dcterms:title "rooting medium pH" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "rooting medium pH" ; + skos:definition "pH measurement of the culture rooting medium; e.g. 5.5." ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Polygamodioecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "root_med_regl" ; + dcterms:title "rooting medium regulators" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "rooting medium regulators" ; + skos:definition "Growth regulators in the culture rooting medium such as cytokinins, auxins, gybberellins, abscisic acid; e.g. 0.5¬†mg/L NAA." ; + skos:inScheme ; + nmdc:expected_value "regulator name;measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Polygamomonoecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "root_med_solid" ; + dcterms:title "rooting medium solidifier" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "rooting medium solidifier" ; + skos:definition "Specification of the solidifying agent in the culture rooting medium; e.g. agar." ; + skos:inScheme ; + nmdc:expected_value "name" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Polygamous" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "root_med_suppl" ; + dcterms:title "rooting medium organic supplements" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "rooting medium organic supplements" ; + skos:definition "Organic supplements of the culture rooting medium, such as vitamins, amino acids, organic acids, antibiotics activated charcoal; e.g. nicotinic acid (0.5¬†mg/L)." ; + skos:inScheme ; + nmdc:expected_value "supplement name;measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Protandrous" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "salinity" ; + dcterms:title "salinity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "salinity" ; + skos:definition "The total concentration of all dissolved salts in a liquid or solid sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater." ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "practical salinity unit, percentage" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Protogynous" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_capt_status" ; + dcterms:title "sample capture status" ; + rdfs:range nmdc:SampCaptStatusEnum ; + rdfs:subPropertyOf ; + skos:altLabel "sample capture status" ; + skos:definition "Reason for the sample" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Subandroecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_collec_device" ; + dcterms:title "sample collection device" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf ; + skos:altLabel "sample collection device" ; + skos:definition "The device used to collect an environmental sample. This field accepts terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO). This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094)." ; + skos:inScheme ; + nmdc:expected_value "device name" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Subdioecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_collect_point" ; + dcterms:title "sample collection point" ; + rdfs:range nmdc:SampCollectPointEnum ; + rdfs:subPropertyOf ; + skos:altLabel "sample collection point" ; + skos:definition "Sampling point on the asset were sample was collected (e.g. Wellhead, storage tank, separator, etc). If \"other\" is specified, please propose entry in \"additional info\" field" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Subgynoecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_dis_stage" ; + dcterms:title "sample disease stage" ; + rdfs:range nmdc:SampDisStageEnum ; + rdfs:subPropertyOf ; + skos:altLabel "sample disease stage" ; + skos:definition "Stage of the disease at the time of sample collection, e.g. inoculation, penetration, infection, growth and reproduction, dissemination of pathogen." ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Synoecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_floor" ; + dcterms:title "sampling floor" ; + rdfs:range nmdc:SampFloorEnum ; + rdfs:subPropertyOf ; + skos:altLabel "sampling floor" ; + skos:definition "The floor of the building, where the sampling room is located" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Trimonoecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_loc_corr_rate" ; + dcterms:title "corrosion rate at sample location" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "corrosion rate at sample location" ; + skos:definition "Metal corrosion rate is the speed of metal deterioration due to environmental conditions. As environmental conditions change corrosion rates change accordingly. Therefore, long term corrosion rates are generally more informative than short term rates and for that reason they are preferred during reporting. In the case of suspected MIC, corrosion rate measurements at the time of sampling might provide insights into the involvement of certain microbial community members in MIC as well as potential microbial interplays" ; + skos:inScheme ; + nmdc:expected_value "measurement value range" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "millimeter per year" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Trioecious" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_mat_process" ; + dcterms:title "sample material processing" ; + rdfs:range nmdc:ControlledTermValue ; + rdfs:subPropertyOf ; + skos:altLabel "sample material processing" ; + skos:definition "A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed." ; + skos:inScheme ; + nmdc:expected_value "text" . - a owl:Class, - nmdc:PlantSexEnum ; - rdfs:label "Unisexual" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_md" ; + dcterms:title "sample measured depth" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "sample measured depth" ; + skos:definition "In non deviated well, measured depth is equal to the true vertical depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated wells, the MD is the length of trajectory of the borehole measured from the same reference or datum. Common datums used are ground level (GL), drilling rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL). If \"other\" is specified, please propose entry in \"additional info\" field" ; + skos:inScheme ; + nmdc:expected_value "measurement value;enumeration" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "meter" . -nmdc:Pooling a owl:Class, - linkml:ClassDefinition ; - rdfs:label "Pooling" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:has_input ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:has_input ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:has_output ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:has_output ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - nmdc:BiosampleProcessing ; - skos:definition "physical combination of several instances of like material." ; - skos:exactMatch OBI:0600016, - nmdc:Pooling ; - skos:inScheme nmdc:nmdc . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_preserv" ; + dcterms:title "preservative added to sample" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "preservative added to sample" ; + skos:definition "Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde, etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml)" ; + skos:inScheme ; + nmdc:expected_value "name;measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milliliter" . - a owl:Class, - nmdc:ProfilePositionEnum ; - rdfs:label "backslope" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_room_id" ; + dcterms:title "sampling room ID or name" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "sampling room ID or name" ; + skos:definition "Sampling room number. This ID should be consistent with the designations on the building floor plans" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:ProfilePositionEnum ; - rdfs:label "footslope" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_store_dur" ; + dcterms:title "sample storage duration" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "sample storage duration" ; + skos:definition "Duration for which the sample was stored" ; + skos:inScheme ; + nmdc:expected_value "duration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:ProfilePositionEnum ; - rdfs:label "shoulder" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_store_loc" ; + dcterms:title "sample storage location" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "sample storage location" ; + skos:definition "Location at which sample was stored, usually name of a specific freezer/room" ; + skos:inScheme ; + nmdc:expected_value "location name" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:ProfilePositionEnum ; - rdfs:label "summit" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_store_temp" ; + dcterms:title "sample storage temperature" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "sample storage temperature" ; + skos:definition "Temperature at which sample was stored, e.g. -80 degree Celsius" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "degree Celsius" . - a owl:Class, - nmdc:ProfilePositionEnum ; - rdfs:label "toeslope" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_subtype" ; + dcterms:title "sample subtype" ; + rdfs:range nmdc:SampSubtypeEnum ; + rdfs:subPropertyOf ; + skos:altLabel "sample subtype" ; + skos:definition "Name of sample sub-type. For example if \"sample type\" is \"Produced Water\" then subtype could be \"Oil Phase\" or \"Water Phase\". If \"other\" is specified, please propose entry in \"additional info\" field" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:QuadPosEnum ; - rdfs:label "East side" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_taxon_id" ; + dcterms:title "Taxonomy ID of DNA sample" ; + rdfs:range nmdc:ControlledIdentifiedTermValue ; + rdfs:subPropertyOf ; + skos:altLabel "Taxonomy ID of DNA sample" ; + skos:definition "NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa sample. Use 'synthetic metagenome’ for mock community/positive controls, or 'blank sample' for negative controls." ; + skos:inScheme ; + skos:note "coal metagenome [NCBITaxon:1260732] would be a reasonable has_raw_value" ; + nmdc:expected_value "Taxonomy ID" . - a owl:Class, - nmdc:QuadPosEnum ; - rdfs:label "North side" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_time_out" ; + dcterms:title "sampling time outside" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "sampling time outside" ; + skos:definition "The recent and long term history of outside sampling" ; + skos:inScheme ; + nmdc:expected_value "time" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "hour" . - a owl:Class, - nmdc:QuadPosEnum ; - rdfs:label "South side" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_transport_cond" ; + dcterms:title "sample transport conditions" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "sample transport conditions" ; + skos:definition "Sample transport duration (in days or hrs) and temperature the sample was exposed to (e.g. 5.5 days; 20 ¬∞C)" ; + skos:inScheme ; + nmdc:expected_value "measurement value;measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "days;degree Celsius" . - a owl:Class, - nmdc:QuadPosEnum ; - rdfs:label "West side" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_tvdss" ; + dcterms:title "sample true vertical depth subsea" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "sample true vertical depth subsea" ; + skos:definition "Depth of the sample i.e. The vertical distance between the sea level and the sampled position in the subsurface. Depth can be reported as an interval for subsurface samples e.g. 1325.75-1362.25 m" ; + skos:inScheme ; + nmdc:expected_value "measurement value or measurement value range" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "meter" . -nmdc:ReactionParticipant a owl:Class, - linkml:ClassDefinition ; - rdfs:label "ReactionParticipant" ; - skos:definition "Instances of this link a reaction to a chemical entity participant" ; - skos:inScheme nmdc:annotation . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_type" ; + dcterms:title "sample type" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "sample type" ; + skos:definition "The type of material from which the sample was obtained. For the Hydrocarbon package, samples include types like core, rock trimmings, drill cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, produced water, injected water, swabs, etc. For the Food Package, samples are usually categorized as food, body products or tissues, or environmental material. This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)." ; + skos:inScheme ; + nmdc:expected_value "GENEPIO:0001246" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RelSampLocEnum ; - rdfs:label "center of car" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_weather" ; + dcterms:title "sampling day weather" ; + rdfs:range nmdc:SampWeatherEnum ; + rdfs:subPropertyOf ; + skos:altLabel "sampling day weather" ; + skos:definition "The weather on the sampling day" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RelSampLocEnum ; - rdfs:label "edge of car" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_well_name" ; + dcterms:title "sample well name" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "sample well name" ; + skos:definition "Name of the well (e.g. BXA1123) where sample was taken" ; + skos:inScheme ; + nmdc:expected_value "name" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RelSampLocEnum ; - rdfs:label "under a seat" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "saturates_pc" ; + dcterms:title "saturates wt%" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "saturates wt%" ; + skos:definition "Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; + skos:inScheme ; + nmdc:expected_value "name;measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "percent" . - a owl:Class, - nmdc:RnaSampleFormatEnum ; - rdfs:label "10 mM Tris-HCl" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "season" ; + dcterms:title "season" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "season" ; + skos:definition "The season when sampling occurred. Any of the four periods into which the year is divided by the equinoxes and solstices. This field accepts terms listed under season (http://purl.obolibrary.org/obo/NCIT_C94729)." ; + skos:inScheme ; + nmdc:expected_value "NCIT:C94729" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RnaSampleFormatEnum ; - rdfs:label "DNAStable" . - - a owl:Class, - nmdc:RnaSampleFormatEnum ; - rdfs:label "Ethanol" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "season_temp" ; + dcterms:title "mean seasonal temperature" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "mean seasonal temperature" ; + skos:definition "Mean seasonal temperature" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "degree Celsius" . - a owl:Class, - nmdc:RnaSampleFormatEnum ; - rdfs:label "Gentegra-DNA" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "season_use" ; + dcterms:title "seasonal use" ; + rdfs:range nmdc:SeasonUseEnum ; + rdfs:subPropertyOf ; + skos:altLabel "seasonal use" ; + skos:definition "The seasons the space is occupied" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RnaSampleFormatEnum ; - rdfs:label "Gentegra-RNA" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "secondary_treatment" ; + dcterms:title "secondary treatment" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "secondary treatment" ; + skos:definition "The process for substantially degrading the biological content of the sewage" ; + skos:inScheme ; + nmdc:expected_value "secondary treatment type" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RnaSampleFormatEnum ; - rdfs:label "Low EDTA TE" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "sediment_type" ; + dcterms:title "sediment type" ; + rdfs:range nmdc:SedimentTypeEnum ; + rdfs:subPropertyOf ; + skos:altLabel "sediment type" ; + skos:definition "Information about the sediment type based on major constituents" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RnaSampleFormatEnum ; - rdfs:label "MDA reaction buffer" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "sewage_type" ; + dcterms:title "sewage type" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "sewage type" ; + skos:definition "Type of wastewater treatment plant as municipial or industrial" ; + skos:inScheme ; + nmdc:expected_value "sewage type name" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RnaSampleFormatEnum ; - rdfs:label "PBS" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "shad_dev_water_mold" ; + dcterms:title "shading device signs of water/mold" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf ; + skos:altLabel "shading device signs of water/mold" ; + skos:definition "Signs of the presence of mold or mildew on the shading device" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RnaSampleFormatEnum ; - rdfs:label "Pellet" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "shading_device_cond" ; + dcterms:title "shading device condition" ; + rdfs:range nmdc:ShadingDeviceCondEnum ; + rdfs:subPropertyOf ; + skos:altLabel "shading device condition" ; + skos:definition "The physical condition of the shading device at the time of sampling" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RnaSampleFormatEnum ; - rdfs:label "RNAStable" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "shading_device_loc" ; + dcterms:title "shading device location" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "shading device location" ; + skos:definition "The location of the shading device in relation to the built structure" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RnaSampleFormatEnum ; - rdfs:label "TE" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "shading_device_mat" ; + dcterms:title "shading device material" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "shading device material" ; + skos:definition "The material the shading device is composed of" ; + skos:inScheme ; + nmdc:expected_value "material name" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RnaSampleFormatEnum ; - rdfs:label "Water" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "shading_device_type" ; + dcterms:title "shading device type" ; + rdfs:range nmdc:ShadingDeviceTypeEnum ; + rdfs:subPropertyOf ; + skos:altLabel "shading device type" ; + skos:definition "The type of shading device" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomCondtEnum ; - rdfs:label "damaged" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "silicate" ; + dcterms:title "silicate" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "silicate" ; + skos:definition "Concentration of silicate" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter" . - a owl:Class, - nmdc:RoomCondtEnum ; - rdfs:label "needs repair" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "size_frac" ; + dcterms:title "size fraction selected" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "size fraction selected" ; + skos:definition "Filtering pore size used in sample preparation" ; + skos:inScheme ; + nmdc:expected_value "filter size value range" . - a owl:Class, - nmdc:RoomCondtEnum ; - rdfs:label "new" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "size_frac_low" ; + dcterms:title "size-fraction lower threshold" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "size-fraction lower threshold" ; + skos:definition "Refers to the mesh/pore size used to pre-filter/pre-sort the sample. Materials larger than the size threshold are excluded from the sample" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micrometer" . - a owl:Class, - nmdc:RoomCondtEnum ; - rdfs:label "rupture" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "size_frac_up" ; + dcterms:title "size-fraction upper threshold" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "size-fraction upper threshold" ; + skos:definition "Refers to the mesh/pore size used to retain the sample. Materials smaller than the size threshold are excluded from the sample" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micrometer" . - a owl:Class, - nmdc:RoomCondtEnum ; - rdfs:label "visible signs of mold/mildew" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "sludge_retent_time" ; + dcterms:title "sludge retention time" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "sludge retention time" ; + skos:definition "The time activated sludge remains in reactor" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "hours" . - a owl:Class, - nmdc:RoomCondtEnum ; - rdfs:label "visible wear" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "sodium" ; + dcterms:title "sodium" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "sodium" ; + skos:definition "Sodium concentration in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter, parts per million" . - a owl:Class, - nmdc:RoomConnectedEnum ; - rdfs:label "attic" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "soil_horizon" ; + dcterms:title "soil horizon" ; + rdfs:range nmdc:SoilHorizonEnum ; + rdfs:subPropertyOf ; + skos:altLabel "soil horizon" ; + skos:definition "Specific layer in the land area which measures parallel to the soil surface and possesses physical characteristics which differ from the layers above and beneath" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomConnectedEnum ; - rdfs:label "bathroom" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "soil_text_measure" ; + dcterms:title "soil texture measurement" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "soil texture measurement" ; + skos:definition "The relative proportion of different grain sizes of mineral particles in a soil, as described using a standard system; express as % sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty clay loam) optional." ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomConnectedEnum ; - rdfs:label "closet" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "soil_texture_meth" ; + dcterms:title "soil texture method" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf ; + skos:altLabel "soil texture method" ; + skos:definition "Reference or method used in determining soil texture" ; + skos:inScheme ; + nmdc:expected_value "PMID,DOI or url" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomConnectedEnum ; - rdfs:label "conference room" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "soil_type_meth" ; + dcterms:title "soil type method" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "soil type method" ; + skos:definition "Reference or method used in determining soil series name or other lower-level classification" ; + skos:inScheme ; + nmdc:expected_value "PMID,DOI or url" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomConnectedEnum ; - rdfs:label "elevator" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "solar_irradiance" ; + dcterms:title "solar irradiance" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "solar irradiance" ; + skos:definition "The amount of solar energy that arrives at a specific area of a surface during a specific time interval" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "kilowatts per square meter per day, ergs per square centimeter per second" . - a owl:Class, - nmdc:RoomConnectedEnum ; - rdfs:label "examining room" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "soluble_react_phosp" ; + dcterms:title "soluble reactive phosphorus" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "soluble reactive phosphorus" ; + skos:definition "Concentration of soluble reactive phosphorus" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . - a owl:Class, - nmdc:RoomConnectedEnum ; - rdfs:label "hallway" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "space_typ_state" ; + dcterms:title "space typical state" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "space typical state" ; + skos:definition "Customary or normal state of the space" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomConnectedEnum ; - rdfs:label "kitchen" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "specific" ; + dcterms:title "specifications" ; + rdfs:range nmdc:SpecificEnum ; + rdfs:subPropertyOf ; + skos:altLabel "specifications" ; + skos:definition "The building specifications. If design is chosen, indicate phase: conceptual, schematic, design development, construction documents" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomConnectedEnum ; - rdfs:label "mail room" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "specific_humidity" ; + dcterms:title "specific humidity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "specific humidity" ; + skos:definition "The mass of water vapour in a unit mass of moist air, usually expressed as grams of vapour per kilogram of air, or, in air conditioning, as grains per pound." ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "gram of air, kilogram of air" . - a owl:Class, - nmdc:RoomConnectedEnum ; - rdfs:label "office" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "sr_dep_env" ; + dcterms:title "source rock depositional environment" ; + rdfs:range nmdc:SrDepEnvEnum ; + rdfs:subPropertyOf ; + skos:altLabel "source rock depositional environment" ; + skos:definition "Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock). If \"other\" is specified, please propose entry in \"additional info\" field" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomConnectedEnum ; - rdfs:label "stairwell" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "sr_geol_age" ; + dcterms:title "source rock geological age" ; + rdfs:range nmdc:SrGeolAgeEnum ; + rdfs:subPropertyOf ; + skos:altLabel "source rock geological age" ; + skos:definition "Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If \"other\" is specified, please propose entry in \"additional info\" field" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomLocEnum ; - rdfs:label "corner room" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "sr_kerog_type" ; + dcterms:title "source rock kerogen type" ; + rdfs:range nmdc:SrKerogTypeEnum ; + rdfs:subPropertyOf ; + skos:altLabel "source rock kerogen type" ; + skos:definition "Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/ fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris (terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen). If \"other\" is specified, please propose entry in \"additional info\" field" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomLocEnum ; - rdfs:label "exterior wall" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "sr_lithology" ; + dcterms:title "source rock lithology" ; + rdfs:range nmdc:SrLithologyEnum ; + rdfs:subPropertyOf ; + skos:altLabel "source rock lithology" ; + skos:definition "Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock). If \"other\" is specified, please propose entry in \"additional info\" field" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomLocEnum ; - rdfs:label "interior room" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "store_cond" ; + dcterms:title "storage conditions" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "storage conditions" ; + skos:definition "Explain how and for how long the soil sample was stored before DNA extraction (fresh/frozen/other)." ; + skos:inScheme ; + nmdc:expected_value "storage condition type;duration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomSampPosEnum ; - rdfs:label "center" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "sulfate" ; + dcterms:title "sulfate" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "sulfate" ; + skos:definition "Concentration of sulfate in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . - a owl:Class, - nmdc:RoomSampPosEnum ; - rdfs:label "east corner" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "sulfate_fw" ; + dcterms:title "sulfate in formation water" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "sulfate in formation water" ; + skos:definition "Original sulfate concentration in the hydrocarbon resource" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter" . - a owl:Class, - nmdc:RoomSampPosEnum ; - rdfs:label "north corner" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "sulfide" ; + dcterms:title "sulfide" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "sulfide" ; + skos:definition "Concentration of sulfide in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . - a owl:Class, - nmdc:RoomSampPosEnum ; - rdfs:label "northeast corner" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "surf_humidity" ; + dcterms:title "surface humidity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "surface humidity" ; + skos:definition "Surfaces: water activity as a function of air and material moisture" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "percentage" . - a owl:Class, - nmdc:RoomSampPosEnum ; - rdfs:label "northwest corner" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "surf_material" ; + dcterms:title "surface material" ; + rdfs:range nmdc:SurfMaterialEnum ; + rdfs:subPropertyOf ; + skos:altLabel "surface material" ; + skos:definition "Surface materials at the point of sampling" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomSampPosEnum ; - rdfs:label "south corner" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "surf_moisture" ; + dcterms:title "surface moisture" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "surface moisture" ; + skos:definition "Water held on a surface" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "parts per million, gram per cubic meter, gram per square meter" . - a owl:Class, - nmdc:RoomSampPosEnum ; - rdfs:label "southeast corner" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "surf_moisture_ph" ; + dcterms:title "surface moisture pH" ; + rdfs:range linkml:Double ; + rdfs:subPropertyOf ; + skos:altLabel "surface moisture pH" ; + skos:definition "ph measurement of surface" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomSampPosEnum ; - rdfs:label "southwest corner" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "surf_temp" ; + dcterms:title "surface temperature" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "surface temperature" ; + skos:definition "Temperature of the surface at the time of sampling" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "degree Celsius" . - a owl:Class, - nmdc:RoomSampPosEnum ; - rdfs:label "west corner" . - - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label ",restroom" . - - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "attic" . - - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "auditorium" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "suspend_part_matter" ; + dcterms:title "suspended particulate matter" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "suspended particulate matter" ; + skos:definition "Concentration of suspended particulate matter" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "bathroom" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "tan" ; + dcterms:title "total acid number" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "total acid number" ; + skos:definition "Total Acid Number¬†(TAN) is a measurement of acidity that is determined by the amount of¬†potassium hydroxide¬†in milligrams that is needed to neutralize the acids in one gram of oil.¬†It is an important quality measurement of¬†crude oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "cafe" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "temp" ; + dcterms:title "temperature" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "temperature" ; + skos:definition "Temperature of the sample at the time of sampling." ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:preferred_unit "degree Celsius" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "closet" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "temp_out" ; + dcterms:title "temperature outside house" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "temperature outside house" ; + skos:definition "The recorded temperature value at sampling time outside" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "degree Celsius" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "conference room" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "tertiary_treatment" ; + dcterms:title "tertiary treatment" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "tertiary treatment" ; + skos:definition "The process providing a final treatment stage to raise the effluent quality before it is discharged to the receiving environment" ; + skos:inScheme ; + nmdc:expected_value "tertiary treatment type" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "data center" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "tidal_stage" ; + dcterms:title "tidal stage" ; + rdfs:range nmdc:TidalStageEnum ; + rdfs:subPropertyOf ; + skos:altLabel "tidal stage" ; + skos:definition "Stage of tide" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "elevator" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "tiss_cult_growth_med" ; + dcterms:title "tissue culture growth media" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "tissue culture growth media" ; + skos:definition "Description of plant tissue culture growth media used" ; + skos:inScheme ; + nmdc:expected_value "PMID,DOI,url or free text" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "examining room" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "toluene" ; + dcterms:title "toluene" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "toluene" ; + skos:definition "Concentration of toluene in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter, parts per million" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "gymnasium" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "tot_depth_water_col" ; + dcterms:title "total depth of water column" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "total depth of water column" ; + skos:definition "Measurement of total depth of water column" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "meter" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "hallway" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "tot_diss_nitro" ; + dcterms:title "total dissolved nitrogen" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "total dissolved nitrogen" ; + skos:definition "Total dissolved nitrogen concentration, reported as nitrogen, measured by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "microgram per liter" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "kitchen" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "tot_inorg_nitro" ; + dcterms:title "total inorganic nitrogen" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "total inorganic nitrogen" ; + skos:definition "Total inorganic nitrogen content" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "microgram per liter" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "laboratory_dry" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "tot_iron" ; + dcterms:title "total iron" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "total iron" ; + skos:definition "Concentration of total iron in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter, milligram per kilogram" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "laboratory_wet" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "tot_nitro" ; + dcterms:title "total nitrogen concentration" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "total nitrogen concentration" ; + skos:definition "Total nitrogen concentration of water samples, calculated by: total nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured without filtering, reported as nitrogen" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "microgram per liter, micromole per liter, milligram per liter" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "lobby" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "tot_part_carb" ; + dcterms:title "total particulate carbon" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "total particulate carbon" ; + skos:definition "Total particulate carbon content" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "microgram per liter, micromole per liter" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "lockers" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "tot_phosp" ; + dcterms:title "total phosphorus" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "total phosphorus" ; + skos:definition "Total phosphorus concentration in the sample, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "mail room" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "tot_phosphate" ; + dcterms:title "total phosphate" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "total phosphate" ; + skos:definition "Total amount or concentration of phosphate" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "microgram per liter, micromole per liter" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "mechanical or electrical room" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "tot_sulfur" ; + dcterms:title "total sulfur" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "total sulfur" ; + skos:definition "Concentration of total sulfur in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter, parts per million" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "natatorium" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "train_line" ; + dcterms:title "train line" ; + rdfs:range nmdc:TrainLineEnum ; + rdfs:subPropertyOf ; + skos:altLabel "train line" ; + skos:definition "The subway line name" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "open office" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "train_stat_loc" ; + dcterms:title "train station collection location" ; + rdfs:range nmdc:TrainStatLocEnum ; + rdfs:subPropertyOf ; + skos:altLabel "train station collection location" ; + skos:definition "The train station collection location" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "private office" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "train_stop_loc" ; + dcterms:title "train stop collection location" ; + rdfs:range nmdc:TrainStopLocEnum ; + rdfs:subPropertyOf ; + skos:altLabel "train stop collection location" ; + skos:definition "The train stop collection location" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "stairwell" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "turbidity" ; + dcterms:title "turbidity" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "turbidity" ; + skos:definition "Measure of the amount of cloudiness or haziness in water caused by individual particles" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "formazin turbidity unit, formazin nephelometric units" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "vestibule" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "tvdss_of_hcr_press" ; + dcterms:title "depth (TVDSS) of hydrocarbon resource pressure" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "depth (TVDSS) of hydrocarbon resource pressure" ; + skos:definition "True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original pressure was measured (e.g. 1578 m)." ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "meter" . - a owl:Class, - nmdc:RoomTypeEnum ; - rdfs:label "warehouse" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "tvdss_of_hcr_temp" ; + dcterms:title "depth (TVDSS) of hydrocarbon resource temperature" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "depth (TVDSS) of hydrocarbon resource temperature" ; + skos:definition "True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original temperature was measured (e.g. 1345 m)." ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "meter" . - a owl:Class, - nmdc:SampCaptStatusEnum ; - rdfs:label "active surveillance in response to an outbreak" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "typ_occup_density" ; + dcterms:title "typical occupant density" ; + rdfs:range linkml:Double ; + rdfs:subPropertyOf ; + skos:altLabel "typical occupant density" ; + skos:definition "Customary or normal density of occupants" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampCaptStatusEnum ; - rdfs:label "active surveillance not initiated by an outbreak" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ventilation_rate" ; + dcterms:title "ventilation rate" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "ventilation rate" ; + skos:definition "Ventilation rate of the system in the sampled premises" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "cubic meter per minute, liters per second" . - a owl:Class, - nmdc:SampCaptStatusEnum ; - rdfs:label "farm sample" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ventilation_type" ; + dcterms:title "ventilation type" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "ventilation type" ; + skos:definition "Ventilation system used in the sampled premises" ; + skos:inScheme ; + nmdc:expected_value "ventilation type name" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampCaptStatusEnum ; - rdfs:label "market sample" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "vfa" ; + dcterms:title "volatile fatty acids" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "volatile fatty acids" ; + skos:definition "Concentration of Volatile Fatty Acids in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter, parts per million" . - a owl:Class, - nmdc:SampCaptStatusEnum ; - rdfs:label "other" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "vfa_fw" ; + dcterms:title "vfa in formation water" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "vfa in formation water" ; + skos:definition "Original volatile fatty acid concentration in the hydrocarbon resource" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter" . - a owl:Class, - nmdc:SampCollectPointEnum ; - rdfs:label "drilling rig" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "vis_media" ; + dcterms:title "visual media" ; + rdfs:range nmdc:VisMediaEnum ; + rdfs:subPropertyOf ; + skos:altLabel "visual media" ; + skos:definition "The building visual media" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampCollectPointEnum ; - rdfs:label "other" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "viscosity" ; + dcterms:title "viscosity" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "viscosity" ; + skos:definition "A measure of oil's resistance¬†to gradual deformation by¬†shear stress¬†or¬†tensile stress (e.g. 3.5 cp; 100 ¬∞C)" ; + skos:inScheme ; + nmdc:expected_value "measurement value;measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "cP at degree Celsius" . - a owl:Class, - nmdc:SampCollectPointEnum ; - rdfs:label "separator" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "wall_area" ; + dcterms:title "wall area" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "wall area" ; + skos:definition "The total area of the sampled room's walls" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "square meter" . - a owl:Class, - nmdc:SampCollectPointEnum ; - rdfs:label "storage tank" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "wall_const_type" ; + dcterms:title "wall construction type" ; + rdfs:range nmdc:WallConstTypeEnum ; + rdfs:subPropertyOf ; + skos:altLabel "wall construction type" ; + skos:definition "The building class of the wall defined by the composition of the building elements and fire-resistance rating." ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampCollectPointEnum ; - rdfs:label "test well" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "wall_finish_mat" ; + dcterms:title "wall finish material" ; + rdfs:range nmdc:WallFinishMatEnum ; + rdfs:subPropertyOf ; + skos:altLabel "wall finish material" ; + skos:definition "The material utilized to finish the outer most layer of the wall" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampCollectPointEnum ; - rdfs:label "well" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "wall_height" ; + dcterms:title "wall height" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "wall height" ; + skos:definition "The average height of the walls in the sampled room" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "centimeter" . - a owl:Class, - nmdc:SampCollectPointEnum ; - rdfs:label "wellhead" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "wall_loc" ; + dcterms:title "wall location" ; + rdfs:range nmdc:WallLocEnum ; + rdfs:subPropertyOf ; + skos:altLabel "wall location" ; + skos:definition "The relative location of the wall within the room" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampDisStageEnum ; - rdfs:label "dissemination" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "wall_surf_treatment" ; + dcterms:title "wall surface treatment" ; + rdfs:range nmdc:WallSurfTreatmentEnum ; + rdfs:subPropertyOf ; + skos:altLabel "wall surface treatment" ; + skos:definition "The surface treatment of interior wall" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampDisStageEnum ; - rdfs:label "growth and reproduction" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "wall_texture" ; + dcterms:title "wall texture" ; + rdfs:range nmdc:WallTextureEnum ; + rdfs:subPropertyOf ; + skos:altLabel "wall texture" ; + skos:definition "The feel, appearance, or consistency of a wall surface" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampDisStageEnum ; - rdfs:label "infection" . - - a owl:Class, - nmdc:SampDisStageEnum ; - rdfs:label "inoculation" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "wall_thermal_mass" ; + dcterms:title "wall thermal mass" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "wall thermal mass" ; + skos:definition "The ability of the wall to provide inertia against temperature fluctuations. Generally this means concrete or concrete block that is either exposed or covered only with paint" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "joule per degree Celsius" . - a owl:Class, - nmdc:SampDisStageEnum ; - rdfs:label "other" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "wall_water_mold" ; + dcterms:title "wall signs of water/mold" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "wall signs of water/mold" ; + skos:definition "Signs of the presence of mold or mildew on a wall" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampDisStageEnum ; - rdfs:label "penetration" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "wastewater_type" ; + dcterms:title "wastewater type" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "wastewater type" ; + skos:definition "The origin of wastewater such as human waste, rainfall, storm drains, etc." ; + skos:inScheme ; + nmdc:expected_value "wastewater type name" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampFloorEnum ; - rdfs:label "1st floor" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "water_current" ; + dcterms:title "water current" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "water current" ; + skos:definition "Measurement of magnitude and direction of flow within a fluid" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "cubic meter per second, knots" . - a owl:Class, - nmdc:SampFloorEnum ; - rdfs:label "2nd floor" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "water_cut" ; + dcterms:title "water cut" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "water cut" ; + skos:definition "Current amount of water (%) in a produced fluid stream; or the average of the combined streams" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "percent" . - a owl:Class, - nmdc:SampFloorEnum ; - rdfs:label "basement" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "water_feat_size" ; + dcterms:title "water feature size" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "water feature size" ; + skos:definition "The size of the water feature" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "square meter" . - a owl:Class, - nmdc:SampFloorEnum ; - rdfs:label "lobby" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "water_feat_type" ; + dcterms:title "water feature type" ; + rdfs:range nmdc:WaterFeatTypeEnum ; + rdfs:subPropertyOf ; + skos:altLabel "water feature type" ; + skos:definition "The type of water feature present within the building being sampled" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampMdEnum ; - rdfs:label "DF" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "water_prod_rate" ; + dcterms:title "water production rate" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "water production rate" ; + skos:definition "Water production rates per well (e.g. 987 m3 / day)" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "cubic meter per day" . - a owl:Class, - nmdc:SampMdEnum ; - rdfs:label "KB" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "weekday" ; + dcterms:title "weekday" ; + rdfs:range nmdc:WeekdayEnum ; + rdfs:subPropertyOf ; + skos:altLabel "weekday" ; + skos:definition "The day of the week when sampling occurred" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampMdEnum ; - rdfs:label "MSL" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "win" ; + dcterms:title "well identification number" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "well identification number" ; + skos:definition "A unique identifier of a well or wellbore. This is part of the Global Framework for Well Identification initiative which is compiled by the Professional Petroleum Data Management Association (PPDM) in an effort to improve well identification systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)" ; + skos:inScheme ; + nmdc:expected_value "text" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampMdEnum ; - rdfs:label "RT" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "wind_direction" ; + dcterms:title "wind direction" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "wind direction" ; + skos:definition "Wind direction is the direction from which a wind originates" ; + skos:inScheme ; + nmdc:expected_value "wind direction name" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampMdEnum ; - rdfs:label "other" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "wind_speed" ; + dcterms:title "wind speed" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "wind speed" ; + skos:definition "Speed of wind measured at the time of sampling" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "meter per second, kilometer per hour" . - a owl:Class, - nmdc:SampSubtypeEnum ; - rdfs:label "biofilm" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "window_cond" ; + dcterms:title "window condition" ; + rdfs:range nmdc:WindowCondEnum ; + rdfs:subPropertyOf ; + skos:altLabel "window condition" ; + skos:definition "The physical condition of the window at the time of sampling" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampSubtypeEnum ; - rdfs:label "not applicable" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "window_cover" ; + dcterms:title "window covering" ; + rdfs:range nmdc:WindowCoverEnum ; + rdfs:subPropertyOf ; + skos:altLabel "window covering" ; + skos:definition "The type of window covering" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampSubtypeEnum ; - rdfs:label "oil phase" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "window_horiz_pos" ; + dcterms:title "window horizontal position" ; + rdfs:range nmdc:WindowHorizPosEnum ; + rdfs:subPropertyOf ; + skos:altLabel "window horizontal position" ; + skos:definition "The horizontal position of the window on the wall" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampSubtypeEnum ; - rdfs:label "other" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "window_loc" ; + dcterms:title "window location" ; + rdfs:range nmdc:WindowLocEnum ; + rdfs:subPropertyOf ; + skos:altLabel "window location" ; + skos:definition "The relative location of the window within the room" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampSubtypeEnum ; - rdfs:label "water phase" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "window_mat" ; + dcterms:title "window material" ; + rdfs:range nmdc:WindowMatEnum ; + rdfs:subPropertyOf ; + skos:altLabel "window material" ; + skos:definition "The type of material used to finish a window" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampWeatherEnum ; - rdfs:label "clear sky" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "window_open_freq" ; + dcterms:title "window open frequency" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "window open frequency" ; + skos:definition "The number of times windows are opened per week" ; + skos:inScheme ; + nmdc:expected_value "value" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:SampWeatherEnum ; - rdfs:label "cloudy" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "window_size" ; + dcterms:title "window area/size" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "window area/size" ; + skos:definition "The window's length and width" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "inch, meter" . - a owl:Class, - nmdc:SampWeatherEnum ; - rdfs:label "foggy" . - - a owl:Class, - nmdc:SampWeatherEnum ; - rdfs:label "hail" . - - a owl:Class, - nmdc:SampWeatherEnum ; - rdfs:label "rain" . - - a owl:Class, - nmdc:SampWeatherEnum ; - rdfs:label "sleet" . - - a owl:Class, - nmdc:SampWeatherEnum ; - rdfs:label "snow" . - - a owl:Class, - nmdc:SampWeatherEnum ; - rdfs:label "sunny" . - - a owl:Class, - nmdc:SampWeatherEnum ; - rdfs:label "windy" . - - a owl:Class, - nmdc:SampleTypeEnum ; - rdfs:label "soil" . - - a owl:Class, - nmdc:SampleTypeEnum ; - rdfs:label "water_extract_soil" . - -nmdc:SamplingMethodEnum a owl:Class, - linkml:EnumDefinition ; - linkml:permissible_values . - - a owl:Class, - nmdc:SeasonUseEnum ; - rdfs:label "Fall" . - - a owl:Class, - nmdc:SeasonUseEnum ; - rdfs:label "Spring" . - - a owl:Class, - nmdc:SeasonUseEnum ; - rdfs:label "Summer" . - - a owl:Class, - nmdc:SeasonUseEnum ; - rdfs:label "Winter" . - - a owl:Class, - nmdc:SedimentTypeEnum ; - rdfs:label "biogenous" . - - a owl:Class, - nmdc:SedimentTypeEnum ; - rdfs:label "cosmogenous" . - - a owl:Class, - nmdc:SedimentTypeEnum ; - rdfs:label "hydrogenous" . - - a owl:Class, - nmdc:SedimentTypeEnum ; - rdfs:label "lithogenous" . - -nmdc:SeparationMethodEnum a owl:Class, - linkml:EnumDefinition ; - linkml:permissible_values . - - a owl:Class, - nmdc:ShadingDeviceCondEnum ; - rdfs:label "damaged" . - - a owl:Class, - nmdc:ShadingDeviceCondEnum ; - rdfs:label "needs repair" . - - a owl:Class, - nmdc:ShadingDeviceCondEnum ; - rdfs:label "new" . - - a owl:Class, - nmdc:ShadingDeviceCondEnum ; - rdfs:label "rupture" . - - a owl:Class, - nmdc:ShadingDeviceCondEnum ; - rdfs:label "visible wear" . - - a owl:Class, - nmdc:ShadingDeviceTypeEnum ; - rdfs:label "bahama shutters" . - - a owl:Class, - nmdc:ShadingDeviceTypeEnum ; - rdfs:label "exterior roll blind" . - - a owl:Class, - nmdc:ShadingDeviceTypeEnum ; - rdfs:label "gambrel awning" . - - a owl:Class, - nmdc:ShadingDeviceTypeEnum ; - rdfs:label "hood awning" . - - a owl:Class, - nmdc:ShadingDeviceTypeEnum ; - rdfs:label "porchroller awning" . - - a owl:Class, - nmdc:ShadingDeviceTypeEnum ; - rdfs:label "sarasota shutters" . - - a owl:Class, - nmdc:ShadingDeviceTypeEnum ; - rdfs:label "slatted aluminum" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "window_status" ; + dcterms:title "window status" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "window status" ; + skos:definition "Defines whether the windows were open or closed during environmental testing" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:ShadingDeviceTypeEnum ; - rdfs:label "solid aluminum awning" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "window_type" ; + dcterms:title "window type" ; + rdfs:range nmdc:WindowTypeEnum ; + rdfs:subPropertyOf ; + skos:altLabel "window type" ; + skos:definition "The type of windows" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:ShadingDeviceTypeEnum ; - rdfs:label "sun screen" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "window_vert_pos" ; + dcterms:title "window vertical position" ; + rdfs:range nmdc:WindowVertPosEnum ; + rdfs:subPropertyOf ; + skos:altLabel "window vertical position" ; + skos:definition "The vertical position of the window on the wall" ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:ShadingDeviceTypeEnum ; - rdfs:label "tree" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "window_water_mold" ; + dcterms:title "window signs of water/mold" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "window signs of water/mold" ; + skos:definition "Signs of the presence of mold or mildew on the window." ; + skos:inScheme ; + nmdc:expected_value "enumeration" ; + nmdc:occurrence "1" . - a owl:Class, - nmdc:ShadingDeviceTypeEnum ; - rdfs:label "trellis" . + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "xylene" ; + dcterms:title "xylene" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "xylene" ; + skos:definition "Concentration of xylene in the sample" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "milligram per liter, parts per million" . - a owl:Class, - nmdc:ShadingDeviceTypeEnum ; - rdfs:label "venetian awning" . +nmdc:AnonymousInstrument a owl:Class, + linkml:ClassDefinition ; + rdfs:label "AnonymousInstrument" ; + rdfs:subClassOf nmdc:InstrumentMixin ; + skos:definition "a tool, device or supplies-like thing that is used in a research setting but does not have a meaningful identifier" ; + skos:inScheme nmdc:core ; + skos:note "one would talk about the model number or broad category", + "this is more likely to be a low cost, interchangeable or even disposable item" . -nmdc:Site a owl:Class, +nmdc:DataObject a owl:Class, linkml:ClassDefinition ; - rdfs:label "Site" ; - dcterms:title "Site" ; + rdfs:label "DataObject" ; rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:file_size_bytes ], + [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], + owl:onProperty nmdc:description ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Activity ; + owl:onProperty nmdc:was_generated_by ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:md5_checksum ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:bytes ; + owl:onProperty nmdc:file_size_bytes ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:FileTypeEnum ; + owl:onProperty nmdc:data_object_type ], [ a owl:Restriction ; owl:minCardinality 1 ; + owl:onProperty nmdc:description ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:description ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:url ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:md5_checksum ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:md5_checksum ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:file_size_bytes ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:was_generated_by ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:was_generated_by ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:url ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:data_object_type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:compression_type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:compression_type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:compression_type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:data_object_type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; owl:onProperty nmdc:id ], [ a owl:Restriction ; owl:maxCardinality 1 ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:minCardinality 1 ; owl:onProperty nmdc:id ], - nmdc:MaterialEntity ; - skos:inScheme nmdc:core ; - skos:note "BCO sample collection site ?" . + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:url ], + nmdc:NamedThing ; + skos:definition "An object that primarily consists of symbols that represent information. Files, records, and omics data are examples of data objects." ; + skos:editorialNote "removed previous id_prefixes value of GOLD, since we are now using pattern-based id validation" ; + skos:inScheme nmdc:nmdc ; + skos:note "removed id_prefixes value of GOLD, since we are now using pattern-based id validation" . - a owl:Class, - nmdc:SoilHorizonEnum ; - rdfs:label "A horizon" . +nmdc:FunctionalAnnotationTerm a owl:Class, + linkml:ClassDefinition ; + rdfs:label "FunctionalAnnotationTerm" ; + rdfs:subClassOf nmdc:OntologyClass ; + skos:altLabel "FunctionalAnnotation", + "function" ; + skos:definition "Abstract grouping class for any term/descriptor that can be applied to a functional unit of a genome (protein, ncRNA, complex)." ; + skos:inScheme nmdc:annotation . - a owl:Class, - nmdc:SoilHorizonEnum ; - rdfs:label "B horizon" . - - a owl:Class, - nmdc:SoilHorizonEnum ; - rdfs:label "C horizon" . +nmdc:MaterialContainer a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MaterialContainer" ; + dcterms:title "Material container" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:contained_in ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:container_size ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:contained_in ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ContainerCategoryEnum ; + owl:onProperty nmdc:contained_in ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:container_size ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty nmdc:container_size ] ; + skos:inScheme nmdc:sample_prep . - a owl:Class, - nmdc:SoilHorizonEnum ; - rdfs:label "E horizon" . +nmdc:MetagenomeAnnotationActivity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MetagenomeAnnotationActivity" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gold_analysis_project_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gold_analysis_project_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^gold:Ga[0-9]+$" ] ) ] ; + owl:onProperty nmdc:gold_analysis_project_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + nmdc:WorkflowExecutionActivity ; + skos:definition "A workflow execution activity that provides functional and structural annotation of assembled metagenome contigs" ; + skos:inScheme nmdc:workflow_execution_activity . - a owl:Class, - nmdc:SoilHorizonEnum ; - rdfs:label "M horizon" . +nmdc:Protocol a owl:Class, + linkml:ClassDefinition ; + rdfs:label "Protocol" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:url ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:url ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:url ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:name ] ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SoilHorizonEnum ; - rdfs:label "O horizon" . +nmdc:activity_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "activity_set" ; + rdfs:range nmdc:WorkflowExecutionActivity ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of workflow activities." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SoilHorizonEnum ; - rdfs:label "Permafrost" . +nmdc:amount_collected a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "amount_collected" ; + dcterms:title "amount collected" ; + rdfs:range nmdc:QuantityValue ; + skos:inScheme nmdc:sample_prep . - a owl:Class, - nmdc:SoilHorizonEnum ; - rdfs:label "R layer" . +nmdc:analysis_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "analysis_identifiers" ; + rdfs:subPropertyOf nmdc:external_database_identifiers ; + skos:inScheme nmdc:external_identifiers . - a owl:Class, - nmdc:SolventEnum ; - rdfs:label "deionized_water" . +nmdc:applies_to_person a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "applies_to_person" ; + rdfs:domain nmdc:CreditAssociation ; + rdfs:range nmdc:PersonValue ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SpecificEnum ; - rdfs:label "as built" . +nmdc:bin_name a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "bin_name" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:SpecificEnum ; - rdfs:label "bid" . +nmdc:bin_quality a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "bin_quality" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:SpecificEnum ; - rdfs:label "construction" . +nmdc:binned_contig_num a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "binned_contig_num" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:workflow_execution_activity . - a owl:Class, - nmdc:SpecificEnum ; - rdfs:label "design" . +nmdc:biosample_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "biosample_set" ; + rdfs:range nmdc:Biosample ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of samples within it." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SpecificEnum ; - rdfs:label "operation" . +nmdc:bulk_elect_conductivity a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "bulk_elect_conductivity" ; + dcterms:title "bulk electrical conductivity" ; + rdfs:range nmdc:QuantityValue ; + skos:definition "Electrical conductivity is a measure of the ability to carry electric current, which is mostly dictated by the chemistry of and amount of water." ; + skos:inScheme nmdc:nmdc ; + skos:note "Provide the value output of the field instrument." . - a owl:Class, - nmdc:SpecificEnum ; - rdfs:label "photos" . +nmdc:bytes a owl:Class, + linkml:TypeDefinition ; + rdfs:subClassOf [ a owl:Restriction ; + owl:onDataRange nmdc:bytes ; + owl:onProperty linkml:topValue ; + owl:qualifiedCardinality 1 ] . - a owl:Class, - nmdc:SrDepEnvEnum ; - rdfs:label "Fluvioldeltaic" . +nmdc:chemical a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "chemical" ; + rdfs:range nmdc:ChemicalEntity ; + skos:definition "from reaction participant class" ; + skos:inScheme nmdc:annotation . - a owl:Class, - nmdc:SrDepEnvEnum ; - rdfs:label "Fluviomarine" . +nmdc:chemical_formula a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "chemical_formula" ; + rdfs:range linkml:String ; + skos:definition "A generic grouping for molecular formulae and empirical formulae" ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:SrDepEnvEnum ; - rdfs:label "Lacustine" . +nmdc:collected_from a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "collected_from" ; + rdfs:domain nmdc:Biosample ; + rdfs:range nmdc:FieldResearchSite ; + skos:definition "The Site from which a Biosample was collected" ; + skos:inScheme nmdc:nmdc ; + skos:note "this illustrates implementing a Biosample relation with a (binary) slot" . - a owl:Class, - nmdc:SrDepEnvEnum ; - rdfs:label "Marine" . +nmdc:collected_into a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "collected_into" ; + dcterms:title "collected into" ; + rdfs:range nmdc:MaterialContainer ; + skos:inScheme nmdc:sample_prep . - a owl:Class, - nmdc:SrDepEnvEnum ; - rdfs:label "other" . +nmdc:collecting_biosamples_from_site_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "collecting_biosamples_from_site_set" ; + rdfs:range nmdc:CollectingBiosamplesFromSite ; + rdfs:subPropertyOf nmdc:object_set ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Archean" . +nmdc:collection_date_inc a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "collection_date_inc" ; + dcterms:title "incubation collection date" ; + rdfs:seeAlso ; + skos:definition "Date the incubation was harvested/collected/ended. Only relevant for incubation samples." ; + skos:editorialNote "MIxS collection_date accepts (truncated) ISO8601. DH taking arbitrary precision date only" ; + skos:inScheme ; + skos:note "Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable." ; + sh:order 2 . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Cambrian" . +nmdc:collection_time a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "collection_time" ; + dcterms:title "collection time, GMT" ; + rdfs:seeAlso ; + skos:definition "The time of sampling, either as an instance (single point) or interval." ; + skos:editorialNote "MIxS collection_date accepts (truncated) ISO8601. DH taking seconds optional time only" ; + skos:inScheme ; + skos:note "Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter" ; + sh:order 1 . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Carboniferous" . +nmdc:collection_time_inc a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "collection_time_inc" ; + dcterms:title "incubation collection time, GMT" ; + rdfs:seeAlso ; + skos:definition "Time the incubation was harvested/collected/ended. Only relevant for incubation samples." ; + skos:editorialNote "MIxS collection_date accepts (truncated) ISO8601. DH taking seconds optional time only" ; + skos:inScheme ; + skos:note "Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter" ; + sh:order 3 . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Cenozoic" . +nmdc:community a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "community" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Cretaceous" . +nmdc:completeness a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "completeness" ; + rdfs:range linkml:Float ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Devonian" . +nmdc:compression_type a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "compression_type" ; + rdfs:range linkml:String ; + skos:definition "If provided, specifies the compression type" ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Jurassic" . - - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Mesozoic" . - - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Neogene" . +nmdc:contamination a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "contamination" ; + rdfs:range linkml:Float ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Ordovician" . +nmdc:count a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "count" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Paleogene" . +nmdc:data_object_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "data_object_set" ; + rdfs:range nmdc:DataObject ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of data objects within it." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Paleozoic" . +nmdc:data_object_type a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "data_object_type" ; + rdfs:range nmdc:FileTypeEnum ; + skos:definition "The type of file represented by the data object." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Permian" . +nmdc:decimal_degree a owl:Class, + linkml:TypeDefinition ; + rdfs:subClassOf [ a owl:Restriction ; + owl:onDataRange nmdc:decimal_degree ; + owl:onProperty linkml:topValue ; + owl:qualifiedCardinality 1 ] . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Precambrian" . +nmdc:direction a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "direction" ; + skos:definition "One of l->r, r->l, bidirectional, neutral" ; + skos:inScheme nmdc:annotation . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Proterozoic" . +nmdc:display_order a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "display_order" ; + rdfs:subPropertyOf nmdc:attribute ; + skos:definition "When rendering information, this attribute to specify the order in which the information should be rendered." ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Silurian" . +nmdc:dissolution_reagent a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dissolution_reagent" ; + dcterms:title "dissolution reagent" ; + rdfs:range nmdc:SolventEnum ; + skos:altLabel "solvent" ; + skos:inScheme nmdc:sample_prep . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "Triassic" . +nmdc:dissolution_volume a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dissolution_volume" ; + dcterms:title "dissolution volume" ; + rdfs:range nmdc:QuantityValue ; + skos:altLabel "volume" ; + skos:inScheme nmdc:sample_prep . - a owl:Class, - nmdc:SrGeolAgeEnum ; - rdfs:label "other" . +nmdc:dissolved_in a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dissolved_in" ; + dcterms:title "dissolved in" ; + rdfs:range nmdc:MaterialContainer ; + skos:altLabel "container" ; + skos:inScheme nmdc:sample_prep . - a owl:Class, - nmdc:SrKerogTypeEnum ; - rdfs:label "Type I" . +nmdc:dna_absorb2 a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_absorb2" ; + dcterms:title "DNA absorbance 260/230" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:biomaterial_purity ; + skos:definition "260/230 measurement of DNA sample purity" ; + skos:inScheme ; + skos:note "Recommended value is between 1 and 3." ; + sh:order 8 . - a owl:Class, - nmdc:SrKerogTypeEnum ; - rdfs:label "Type II" . +nmdc:dna_collect_site a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_collect_site" ; + dcterms:title "DNA collection site" ; + skos:definition "Provide information on the site your DNA sample was collected from" ; + skos:inScheme ; + sh:order 15 . - a owl:Class, - nmdc:SrKerogTypeEnum ; - rdfs:label "Type III" . +nmdc:dna_container_id a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_container_id" ; + dcterms:title "DNA container label" ; + skos:inScheme ; + skos:note "Must be unique across all tubes and plates, and <20 characters. All samples in a plate should have the same plate label." ; + sh:order 9 . - a owl:Class, - nmdc:SrKerogTypeEnum ; - rdfs:label "Type IV" . +nmdc:dna_dnase a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_dnase" ; + dcterms:title "DNase treatment DNA" ; + rdfs:range nmdc:YesNoEnum ; + skos:inScheme ; + skos:note "Note DNase treatment is required for all RNA samples." ; + sh:order 13 . - a owl:Class, - nmdc:SrKerogTypeEnum ; - rdfs:label "other" . +nmdc:dna_isolate_meth a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_isolate_meth" ; + dcterms:title "DNA isolation method" ; + skos:definition "Describe the method/protocol/kit used to extract DNA/RNA." ; + skos:inScheme ; + sh:order 16 . - a owl:Class, - nmdc:SrLithologyEnum ; - rdfs:label "Biosilicieous" . +nmdc:dna_organisms a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_organisms" ; + dcterms:title "DNA expected organisms" ; + skos:definition "List any organisms known or suspected to grow in co-culture, as well as estimated % of the organism in that culture." ; + skos:inScheme ; + sh:order 14 . - a owl:Class, - nmdc:SrLithologyEnum ; - rdfs:label "Carbonate" . +nmdc:dna_project_contact a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_project_contact" ; + dcterms:title "DNA seq project contact" ; + skos:inScheme ; + skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; + sh:order 18 . - a owl:Class, - nmdc:SrLithologyEnum ; - rdfs:label "Clastic" . +nmdc:dna_samp_id a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_samp_id" ; + dcterms:title "DNA sample ID" ; + skos:inScheme ; + skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; + sh:order 3 . - a owl:Class, - nmdc:SrLithologyEnum ; - rdfs:label "Coal" . +nmdc:dna_sample_format a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_sample_format" ; + dcterms:title "DNA sample format" ; + rdfs:range nmdc:DnaSampleFormatEnum ; + skos:definition "Solution in which the DNA sample has been suspended" ; + skos:inScheme ; + sh:order 12 . - a owl:Class, - nmdc:SrLithologyEnum ; - rdfs:label "other" . +nmdc:dna_sample_name a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_sample_name" ; + dcterms:title "DNA sample name" ; + skos:definition "Give the DNA sample a name that is meaningful to you. Sample names must be unique across all JGI projects and contain a-z, A-Z, 0-9, - and _ only." ; + skos:inScheme ; + sh:order 4 . - a owl:Class, - nmdc:StatusEnum ; - rdfs:label "fail" . +nmdc:dna_seq_project a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_seq_project" ; + dcterms:title "DNA seq project ID" ; + skos:inScheme ; + skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; + sh:order 1 . - a owl:Class, - nmdc:StatusEnum ; - rdfs:label "pass" . +nmdc:dna_seq_project_name a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_seq_project_name" ; + dcterms:title "DNA seq project name" ; + skos:inScheme ; + skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; + sh:order 2 . - a owl:Class, - nmdc:StudyCategoryEnum ; - rdfs:label "consortium" . +nmdc:dna_seq_project_pi a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_seq_project_pi" ; + dcterms:title "DNA seq project PI" ; + skos:inScheme ; + skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; + sh:order 17 . - a owl:Class, - nmdc:StudyCategoryEnum ; - rdfs:label "research_study" . +nmdc:dna_volume a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_volume" ; + dcterms:title "DNA volume in ul" ; + rdfs:range [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Float [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:maxInclusive 1000 ] ) ] ) ] ; + skos:inScheme ; + skos:note "Units must be in uL. Enter the numerical part only. Value must be 0-1000. This form accepts values < 25, but JGI may refuse to process them unless permission has been granted by a project manager" ; + sh:order 6 . - a owl:Class, - nmdc:SubstructureTypeEnum ; - rdfs:label "basement" . +nmdc:dnase_rna a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dnase_rna" ; + dcterms:title "DNase treated" ; + rdfs:range nmdc:YesNoEnum ; + skos:inScheme ; + skos:note "Note DNase treatment is required for all RNA samples." ; + sh:order 13 . - a owl:Class, - nmdc:SubstructureTypeEnum ; - rdfs:label "crawlspace" . +nmdc:doi_value a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "doi_value" ; + rdfs:domain nmdc:Doi ; + rdfs:range [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Uriorcurie [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^doi:10.\\d{2,9}/.*$" ] ) ] ) ] ; + skos:altLabel "DOI", + "digital object identifier" ; + skos:definition "A digital object identifier, which is intended to persistantly identify some resource on the web." ; + skos:exactMatch OBI:0002110 ; + skos:inScheme nmdc:nmdc ; + skos:narrowMatch edam.data:1188 . - a owl:Class, - nmdc:SubstructureTypeEnum ; - rdfs:label "slab on grade" . +nmdc:duration a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "duration" ; + rdfs:range nmdc:QuantityValue ; + skos:definition "The elapsed time of an activity." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SurfAirContEnum ; - rdfs:label "biocides" . - - a owl:Class, - nmdc:SurfAirContEnum ; - rdfs:label "biological contaminants" . - - a owl:Class, - nmdc:SurfAirContEnum ; - rdfs:label "dust" . +nmdc:email a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "email" ; + rdfs:range linkml:String ; + skos:definition "An email address for an entity such as a person. This should be the primary email address used." ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:SurfAirContEnum ; - rdfs:label "nutrients" . +nmdc:embargoed a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "embargoed" ; + rdfs:range linkml:Boolean ; + skos:definition "If true, the data are embargoed and not available for public access." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SurfAirContEnum ; - rdfs:label "organic matter" . +nmdc:emsl_biosample_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "emsl_biosample_identifiers" ; + dcterms:title "EMSL Biosample Identifiers" ; + rdfs:subPropertyOf nmdc:biosample_identifiers, + nmdc:emsl_identifiers ; + skos:definition "A list of identifiers for the biosample from the EMSL database. This is used to link the biosample, as modeled by NMDC, to the biosample in the planned EMSL NEXUS database." ; + skos:inScheme nmdc:external_identifiers . - a owl:Class, - nmdc:SurfAirContEnum ; - rdfs:label "particulate matter" . +nmdc:emsl_project_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "emsl_project_identifiers" ; + dcterms:title "EMSL Project Identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^emsl\\.project:[0-9]{5}$" ] ) ] ; + rdfs:seeAlso ; + rdfs:subPropertyOf nmdc:emsl_identifiers, + nmdc:study_identifiers ; + skos:definition "an identifier that links to an EMSL user facility project" ; + skos:editorialNote "these identifiers are all currently 5 digits long but that could change in the future" ; + skos:inScheme nmdc:external_identifiers . - a owl:Class, - nmdc:SurfAirContEnum ; - rdfs:label "radon" . +nmdc:encodes a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "encodes" ; + rdfs:range nmdc:GeneProduct ; + skos:definition "The gene product encoded by this feature. Typically this is used for a CDS feature or gene feature which will encode a protein. It can also be used by a nc transcript ot gene feature that encoded a ncRNA" ; + skos:inScheme nmdc:annotation . - a owl:Class, - nmdc:SurfAirContEnum ; - rdfs:label "volatile organic compounds" . +nmdc:end a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "end" ; + rdfs:subPropertyOf nmdc:gff_coordinate ; + skos:closeMatch ; + skos:definition "The end of the feature in positive 1-based integer coordinates" ; + skos:inScheme nmdc:annotation ; + skos:note "- \"constraint: end > start\" - \"For features that cross the origin of a circular feature, end = the position of the end + the length of the landmark feature.\"" . - a owl:Class, - nmdc:SurfMaterialEnum ; - rdfs:label "adobe" . +nmdc:end_date a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "end_date" ; + rdfs:range linkml:String ; + skos:definition "The date on which any process or activity was ended" ; + skos:inScheme nmdc:basic_slots ; + skos:note "The date should be formatted as YYYY-MM-DD", + "We are using string representations of dates until all components of our ecosystem can handle ISO 8610 dates" . - a owl:Class, - nmdc:SurfMaterialEnum ; - rdfs:label "carpet" . +nmdc:env_package a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "env_package" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf nmdc:attribute ; + skos:altLabel "environmental package" ; + skos:definition "MIxS extension for reporting of measurements and observations obtained from one or more of the environments where the sample was obtained. All environmental packages listed here are further defined in separate subtables. By giving the name of the environmental package, a selection of fields can be made from the subtables and can be reported" ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SurfMaterialEnum ; - rdfs:label "cinder blocks" . +nmdc:execution_resource a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "execution_resource" ; + rdfs:subPropertyOf nmdc:attribute ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:SurfMaterialEnum ; - rdfs:label "concrete" . +nmdc:experimental_factor_other a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "experimental_factor_other" ; + dcterms:title "experimental factor- other" ; + rdfs:seeAlso , + ; + skos:definition "Other details about your sample that you feel can't be accurately represented in the available columns." ; + skos:inScheme ; + skos:note "Provided pairs will be considered for inclusion as future slots/terms in this data collection template.", + "This slot accepts open-ended text about your sample.", + "We recommend using key:value pairs." ; + sh:order 7 . - a owl:Class, - nmdc:SurfMaterialEnum ; - rdfs:label "glass" . +nmdc:extraction_method a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "extraction_method" ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SurfMaterialEnum ; - rdfs:label "hay bales" . +nmdc:extraction_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "extraction_set" ; + rdfs:range nmdc:Extraction ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of extractions within it." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SurfMaterialEnum ; - rdfs:label "metal" . +nmdc:extraction_target a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "extraction_target" ; + rdfs:range nmdc:ExtractionTargetEnum ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SurfMaterialEnum ; - rdfs:label "paint" . +nmdc:feature_type a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "feature_type" ; + skos:definition "TODO: Yuri to write" ; + skos:inScheme nmdc:annotation . - a owl:Class, - nmdc:SurfMaterialEnum ; - rdfs:label "plastic" . +nmdc:field_research_site_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "field_research_site_set" ; + rdfs:range nmdc:FieldResearchSite ; + rdfs:subPropertyOf nmdc:object_set ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SurfMaterialEnum ; - rdfs:label "stainless steel" . +nmdc:file_size_bytes a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "file_size_bytes" ; + rdfs:range nmdc:bytes ; + rdfs:subPropertyOf nmdc:attribute ; + skos:definition "Size of the file in bytes" ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:SurfMaterialEnum ; - rdfs:label "stone" . +nmdc:filter_material a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "filter_material" ; + rdfs:range linkml:String ; + skos:definition "A porous material on which solid particles present in air or other fluid which flows through it are largely caught and retained." ; + skos:inScheme nmdc:nmdc ; + skos:note "Filters are made with a variety of materials: cellulose and derivatives, glass fibre, ceramic, synthetic plastics and fibres. Filters may be naturally porous or be made so by mechanical or other means. Membrane/ceramic filters are prepared with highly controlled pore size in a sheet of suitable material such as polyfluoroethylene, polycarbonate or cellulose esters. Nylon mesh is sometimes used for reinforcement. The pores constitute 80–85% of the filter volume commonly and several pore sizes are available for air sampling (0.45−0.8 μm are commonly employed)." . - a owl:Class, - nmdc:SurfMaterialEnum ; - rdfs:label "stucco" . +nmdc:filter_method a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "filter_method" ; + dcterms:title "filter method" ; + rdfs:seeAlso ; + skos:definition "Type of filter used or how the sample was filtered" ; + skos:inScheme ; + skos:note "describe the filter or provide a catalog number and manufacturer" ; + sh:order 6 . - a owl:Class, - nmdc:SurfMaterialEnum ; - rdfs:label "tile" . +nmdc:filter_pore_size a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "filter_pore_size" ; + rdfs:range nmdc:QuantityValue ; + skos:definition "A quantitative or qualitative measurement of the physical dimensions of the pores in a material." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SurfMaterialEnum ; - rdfs:label "vinyl" . +nmdc:filtration_category a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "filtration_category" ; + rdfs:range linkml:String ; + skos:definition "The type of conditioning applied to a filter, device, etc." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:SurfMaterialEnum ; - rdfs:label "wood" . +nmdc:functional_annotation_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "functional_annotation_set" ; + rdfs:range nmdc:FunctionalAnnotation ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of all functional annotations" ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:TidalStageEnum ; - rdfs:label "ebb tide" . +nmdc:gene_count a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gene_count" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:TidalStageEnum ; - rdfs:label "flood tide" . +nmdc:gene_function_id a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gene_function_id" ; + rdfs:range linkml:Uriorcurie ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:TidalStageEnum ; - rdfs:label "high tide" . +nmdc:genome_feature_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "genome_feature_set" ; + rdfs:range nmdc:GenomeFeature ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of all features" ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:TidalStageEnum ; - rdfs:label "low tide" . +nmdc:git_url a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "git_url" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf nmdc:attribute ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:TillageEnum ; - rdfs:label "chisel" . +nmdc:gnps_task_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gnps_task_identifiers" ; + dcterms:title "GNPS task identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^gnps\\.task:[a-f0-9]+$" ] ) ] ; + rdfs:seeAlso ; + rdfs:subPropertyOf nmdc:gnps_identifiers, + nmdc:study_identifiers ; + skos:definition "identifiers that link a NMDC study to a web-based report about metabolomics analysis progress and results" ; + skos:inScheme nmdc:external_identifiers ; + skos:note "this could be considered a related identifier, as the metabolomics progress and results aren't a study per se", + "this identifier was registered with bioregistry but not identifiers.org" . - a owl:Class, - nmdc:TillageEnum ; - rdfs:label "cutting disc" . +nmdc:gold_biosample_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gold_biosample_identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^gold:Gb[0-9]+$" ] ) ] ; + rdfs:subPropertyOf nmdc:biosample_identifiers, + nmdc:gold_identifiers ; + skos:definition "identifiers for corresponding sample in GOLD" ; + skos:inScheme nmdc:external_identifiers . - a owl:Class, - nmdc:TillageEnum ; - rdfs:label "disc plough" . - - a owl:Class, - nmdc:TillageEnum ; - rdfs:label "drill" . - - a owl:Class, - nmdc:TillageEnum ; - rdfs:label "mouldboard" . +nmdc:gold_sequencing_project_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gold_sequencing_project_identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^gold:Gp[0-9]+$" ] ) ] ; + rdfs:subPropertyOf nmdc:gold_identifiers, + nmdc:omics_processing_identifiers ; + skos:definition "identifiers for corresponding sequencing project in GOLD" ; + skos:inScheme nmdc:external_identifiers . - a owl:Class, - nmdc:TillageEnum ; - rdfs:label "ridge till" . +nmdc:gold_study_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gold_study_identifiers" ; + dcterms:title "GOLD Study Identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^gold:Gs[0-9]+$" ] ) ] ; + rdfs:seeAlso ; + rdfs:subPropertyOf nmdc:gold_identifiers, + nmdc:study_identifiers ; + skos:definition "identifiers for corresponding project(s) in GOLD" ; + skos:inScheme nmdc:external_identifiers ; + skos:note "uses the prefix GS (but possibly in a different case)" . - a owl:Class, - nmdc:TillageEnum ; - rdfs:label "strip tillage" . +nmdc:gtdbtk_class a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gtdbtk_class" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:TillageEnum ; - rdfs:label "tined" . +nmdc:gtdbtk_domain a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gtdbtk_domain" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:TillageEnum ; - rdfs:label "zonal tillage" . +nmdc:gtdbtk_family a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gtdbtk_family" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:TrainLineEnum ; - rdfs:label "green" . +nmdc:gtdbtk_genus a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gtdbtk_genus" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:TrainLineEnum ; - rdfs:label "orange" . +nmdc:gtdbtk_order a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gtdbtk_order" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:TrainLineEnum ; - rdfs:label "red" . +nmdc:gtdbtk_phylum a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gtdbtk_phylum" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:TrainStatLocEnum ; - rdfs:label "forest hills" . +nmdc:gtdbtk_species a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gtdbtk_species" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:TrainStatLocEnum ; - rdfs:label "riverside" . +nmdc:has_boolean_value a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has_boolean_value" ; + rdfs:range linkml:Boolean ; + skos:definition "Links a quantity value to a boolean" ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:TrainStatLocEnum ; - rdfs:label "south station above ground" . +nmdc:has_function a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has_function" ; + rdfs:range [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:String [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^(KEGG_PATHWAY:\\w{2,4}\\d{5}|KEGG.REACTION:R\\d+|RHEA:\\d{5}|MetaCyc:[A-Za-z0-9+_.%-:]+|EC:\\d{1,2}(\\.\\d{0,3}){0,3}|GO:\\d{7}|MetaNetX:(MNXR\\d+|EMPTY)|SEED:\\w+|KEGG\\.ORTHOLOGY:K\\d+|EGGNOG:\\w+|PFAM:PF\\d{5}|TIGRFAM:TIGR\\d+|SUPFAM:\\w+|CATH:[1-6]\\.[0-9]+\\.[0-9]+\\.[0-9]+|PANTHER.FAMILY:PTHR\\d{5}(\\:SF\\d{1,3})?)$" ] ) ] ) ] ; + skos:editorialNote "and those are frequently fulltext, not CURIEs. MAM 2021-06-23", + "but is actually taking string arguments in MongoDB,", + "the range for has_function was asserted as functional_annotation_term/FunctionalAnnotationTerm," ; + skos:inScheme nmdc:annotation . - a owl:Class, - nmdc:TrainStatLocEnum ; - rdfs:label "south station amtrak" . +nmdc:has_maximum_numeric_value a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has_maximum_numeric_value" ; + rdfs:subPropertyOf nmdc:has_numeric_value ; + skos:definition "The maximum value part, expressed as number, of the quantity value when the value covers a range." ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:TrainStatLocEnum ; - rdfs:label "south station underground" . +nmdc:has_minimum_numeric_value a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has_minimum_numeric_value" ; + rdfs:subPropertyOf nmdc:has_numeric_value ; + skos:definition "The minimum value part, expressed as number, of the quantity value when the value covers a range." ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:TrainStopLocEnum ; - rdfs:label "downtown" . +nmdc:has_unit a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has_unit" ; + rdfs:range nmdc:unit ; + skos:altLabel "scale" ; + skos:definition "Links a QuantityValue to a unit" ; + skos:inScheme nmdc:core ; + skos:mappingRelation , + . - a owl:Class, - nmdc:TrainStopLocEnum ; - rdfs:label "end" . +nmdc:highest_similarity_score a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "highest_similarity_score" ; + rdfs:range linkml:Float ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:TrainStopLocEnum ; - rdfs:label "mid" . +nmdc:host_name a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_name" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:VisMediaEnum ; - rdfs:label "3D scans" . +nmdc:igsn_biosample_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "igsn_biosample_identifiers" ; + dcterms:title "IGSN Biosample Identifiers" ; + rdfs:subPropertyOf nmdc:biosample_identifiers, + nmdc:igsn_identifiers ; + skos:definition "A list of identifiers for the biosample from the IGSN database." ; + skos:inScheme nmdc:external_identifiers . - a owl:Class, - nmdc:VisMediaEnum ; - rdfs:label "commonly of the building" . +nmdc:img_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "img_identifiers" ; + dcterms:title "IMG Identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^img\\.taxon:[a-zA-Z0-9_][a-zA-Z0-9_\\/\\.]*$" ] ) ] ; + rdfs:subPropertyOf nmdc:external_database_identifiers ; + skos:definition "A list of identifiers that relate the biosample to records in the IMG database." ; + skos:inScheme nmdc:external_identifiers . - a owl:Class, - nmdc:VisMediaEnum ; - rdfs:label "equipment" . +nmdc:inchi a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "inchi" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:VisMediaEnum ; - rdfs:label "interiors" . +nmdc:inchi_key a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "inchi_key" ; + rdfs:range linkml:String ; + skos:editorialNote "key set to false due to rare collisions: Pletnev I, Erin A, McNaught A, Blinov K, Tchekhovskoi D, Heller S (2012) InChIKey collision resistance: an experimental testing. J Cheminform. 4:12" ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:VisMediaEnum ; - rdfs:label "photos" . +nmdc:input_base_count a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "input_base_count" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:read_qc_analysis_statistic ; + skos:definition "The nucleotide base count number of input reads for QC analysis." ; + skos:inScheme nmdc:workflow_execution_activity . - a owl:Class, - nmdc:VisMediaEnum ; - rdfs:label "site context (adjacent buildings, vegetation, terrain, streets)" . +nmdc:input_contig_num a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "input_contig_num" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:workflow_execution_activity . - a owl:Class, - nmdc:VisMediaEnum ; - rdfs:label "videos" . +nmdc:input_mass a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "input_mass" ; + dcterms:title "sample mass used" ; + rdfs:range nmdc:QuantityValue ; + skos:altLabel "sample mass", + "sample weight" ; + skos:definition "Total mass of sample used in activity." ; + skos:exactMatch MS:1000004 ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WallConstTypeEnum ; - rdfs:label "fire resistive" . +nmdc:input_read_bases a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "input_read_bases" ; + rdfs:range linkml:Float ; + skos:definition "TODO " ; + skos:inScheme nmdc:workflow_execution_activity . - a owl:Class, - nmdc:WallConstTypeEnum ; - rdfs:label "frame construction" . +nmdc:input_read_count a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "input_read_count" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:read_qc_analysis_statistic ; + skos:definition "The sequence count number of input reads for QC analysis." ; + skos:inScheme nmdc:workflow_execution_activity . - a owl:Class, - nmdc:WallConstTypeEnum ; - rdfs:label "joisted masonry" . +nmdc:insdc_biosample_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "insdc_biosample_identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^biosample:SAM[NED]([A-Z])?[0-9]+$" ] ) ] ; + rdfs:seeAlso , + , + , + ; + rdfs:subPropertyOf nmdc:biosample_identifiers, + nmdc:insdc_identifiers ; + skos:altLabel "DDBJ biosample identifiers", + "EBI biosample identifiers", + "NCBI biosample identifiers" ; + skos:definition "identifiers for corresponding sample in INSDC" ; + skos:inScheme nmdc:external_identifiers . - a owl:Class, - nmdc:WallConstTypeEnum ; - rdfs:label "light noncombustible" . +nmdc:insdc_experiment_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "insdc_experiment_identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^insdc.sra:(E|D|S)RX[0-9]{6,}$" ] ) ] ; + rdfs:subPropertyOf nmdc:external_database_identifiers, + nmdc:insdc_identifiers ; + skos:inScheme nmdc:external_identifiers . - a owl:Class, - nmdc:WallConstTypeEnum ; - rdfs:label "masonry noncombustible" . - - a owl:Class, - nmdc:WallConstTypeEnum ; - rdfs:label "modified fire resistive" . - - a owl:Class, - nmdc:WallFinishMatEnum ; - rdfs:label "acoustical treatment" . +nmdc:instrument_name a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "instrument_name" ; + skos:definition "The name of the instrument that was used for processing the sample." ; + skos:inScheme nmdc:basic_slots . - a owl:Class, - nmdc:WallFinishMatEnum ; - rdfs:label "gypsum board" . +nmdc:is_balanced a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "is_balanced" ; + rdfs:range linkml:Boolean ; + skos:inScheme nmdc:annotation . - a owl:Class, - nmdc:WallFinishMatEnum ; - rdfs:label "gypsum plaster" . +nmdc:is_diastereoselective a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "is_diastereoselective" ; + rdfs:range linkml:Boolean ; + skos:inScheme nmdc:annotation . - a owl:Class, - nmdc:WallFinishMatEnum ; - rdfs:label "masonry" . +nmdc:is_fully_characterized a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "is_fully_characterized" ; + rdfs:range linkml:Boolean ; + skos:definition "False if includes R-groups" ; + skos:inScheme nmdc:annotation . - a owl:Class, - nmdc:WallFinishMatEnum ; - rdfs:label "metal" . +nmdc:is_pressurized a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "is_pressurized" ; + rdfs:range linkml:Boolean ; + skos:definition "Whether or not pressure was applied to a thing or process." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WallFinishMatEnum ; - rdfs:label "plaster" . +nmdc:is_stereo a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "is_stereo" ; + rdfs:range linkml:Boolean ; + skos:inScheme nmdc:annotation . - a owl:Class, - nmdc:WallFinishMatEnum ; - rdfs:label "stone facing" . +nmdc:is_transport a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "is_transport" ; + rdfs:range linkml:Boolean ; + skos:inScheme nmdc:annotation . - a owl:Class, - nmdc:WallFinishMatEnum ; - rdfs:label "terrazzo" . +nmdc:isotope_exposure a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "isotope_exposure" ; + dcterms:title "isotope exposure/addition" ; + rdfs:seeAlso ; + skos:definition "List isotope exposure or addition applied to your sample." ; + skos:inScheme ; + skos:note "This is required when your experimental design includes the use of isotopically labeled compounds" ; + sh:order 16 . - a owl:Class, - nmdc:WallFinishMatEnum ; - rdfs:label "tile" . +nmdc:jgi_portal_study_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "jgi_portal_study_identifiers" ; + dcterms:title "JGI Portal Study identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^jgi.proposal:\\d+$" ] ) ] ; + rdfs:subPropertyOf nmdc:jgi_portal_identifiers, + nmdc:study_identifiers ; + skos:definition "Identifiers that link a NMDC study to a website hosting raw and analyzed data for a JGI proposal. The suffix of the curie can used to query the GOLD API and is interoperable with an award DOI from OSTI and a GOLD study identifier." ; + skos:inScheme nmdc:external_identifiers ; + skos:note "Could this could be considered a related identifier?", + "Curie suffix is the Site Award Number from an OSTI award page", + "Site Award Number 507130 == award doi doi:10.46936/10.25585/60000017 -- GOLD study identifier gold:Gs0154044", + "bioregistry.io/jgi.proposal:507130 ==https://genome.jgi.doe.gov/portal/BioDefcarcycling/BioDefcarcycling.info.html" . - a owl:Class, - nmdc:WallFinishMatEnum ; - rdfs:label "veneer plaster" . +nmdc:language a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "language" ; + rdfs:range nmdc:language_code ; + skos:definition "Should use ISO 639-1 code e.g. \"en\", \"fr\"" ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:WallFinishMatEnum ; - rdfs:label "wood" . +nmdc:language_code a owl:Class, + linkml:TypeDefinition ; + rdfs:subClassOf [ a owl:Restriction ; + owl:onDataRange nmdc:language_code ; + owl:onProperty linkml:topValue ; + owl:qualifiedCardinality 1 ] . - a owl:Class, - nmdc:WallLocEnum ; - rdfs:label "east" . +nmdc:latitude a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "latitude" ; + rdfs:domain nmdc:GeolocationValue ; + rdfs:range nmdc:decimal_degree ; + skos:definition "latitude" ; + skos:inScheme nmdc:core ; + skos:mappingRelation . - a owl:Class, - nmdc:WallLocEnum ; - rdfs:label "north" . +nmdc:library_preparation_kit a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "library_preparation_kit" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WallLocEnum ; - rdfs:label "south" . +nmdc:library_preparation_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "library_preparation_set" ; + rdfs:range nmdc:LibraryPreparation ; + rdfs:subPropertyOf nmdc:object_set ; + skos:altLabel "library_construction_set" ; + skos:definition "This property links a database object to the set of DNA extractions within it." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WallLocEnum ; - rdfs:label "west" . +nmdc:library_type a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "library_type" ; + dcterms:title "library type" ; + rdfs:range nmdc:LibraryTypeEnum ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WallSurfTreatmentEnum ; - rdfs:label "fabric" . +nmdc:location a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "location" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WallSurfTreatmentEnum ; - rdfs:label "no treatment" . +nmdc:longitude a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "longitude" ; + rdfs:domain nmdc:GeolocationValue ; + rdfs:range nmdc:decimal_degree ; + skos:definition "longitude" ; + skos:inScheme nmdc:core ; + skos:mappingRelation . - a owl:Class, - nmdc:WallSurfTreatmentEnum ; - rdfs:label "painted" . +nmdc:low_depth_contig_num a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "low_depth_contig_num" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:workflow_execution_activity . - a owl:Class, - nmdc:WallSurfTreatmentEnum ; - rdfs:label "paneling" . +nmdc:mags_activity_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "mags_activity_set" ; + rdfs:range nmdc:MagsAnalysisActivity ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of MAGs analysis activities." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WallSurfTreatmentEnum ; - rdfs:label "stucco" . +nmdc:mass a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "mass" ; + dcterms:title "mass" ; + rdfs:range nmdc:QuantityValue ; + skos:definition "A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter." ; + skos:exactMatch PATO:0000125 ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WallSurfTreatmentEnum ; - rdfs:label "wall paper" . +nmdc:md5_checksum a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "md5_checksum" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf nmdc:attribute ; + skos:definition "MD5 checksum of file (pre-compressed)" ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:WallTextureEnum ; - rdfs:label "" . +nmdc:members_id a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "members_id" ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:WallTextureEnum ; - rdfs:label "Santa-Fe texture" . +nmdc:metabolite_quantified a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "metabolite_quantified" ; + rdfs:range nmdc:ChemicalEntity ; + skos:definition "the specific metabolite identifier" ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:WallTextureEnum ; - rdfs:label "crows feet" . +nmdc:metabolomics_analysis_activity_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "metabolomics_analysis_activity_set" ; + rdfs:range nmdc:MetabolomicsAnalysisActivity ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of metabolomics analysis activities." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WallTextureEnum ; - rdfs:label "crows-foot stomp" . +nmdc:metagenome_annotation_activity_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "metagenome_annotation_activity_set" ; + rdfs:range nmdc:MetagenomeAnnotationActivity ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of metagenome annotation activities." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WallTextureEnum ; - rdfs:label "double skip" . +nmdc:metagenome_annotation_id a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "metagenome_annotation_id" ; + rdfs:range nmdc:WorkflowExecutionActivity ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WallTextureEnum ; - rdfs:label "hawk and trowel" . +nmdc:metagenome_assembly_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "metagenome_assembly_set" ; + rdfs:range nmdc:MetagenomeAssembly ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of metagenome assembly activities." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WallTextureEnum ; - rdfs:label "knockdown" . +nmdc:metagenome_sequencing_activity_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "metagenome_sequencing_activity_set" ; + rdfs:range nmdc:MetagenomeSequencingActivity ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of metagenome sequencing activities." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WallTextureEnum ; - rdfs:label "orange peel" . +nmdc:metaproteomics_analysis_activity_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "metaproteomics_analysis_activity_set" ; + rdfs:range nmdc:MetaproteomicsAnalysisActivity ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of metaproteomics analysis activities." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WallTextureEnum ; - rdfs:label "popcorn" . - - a owl:Class, - nmdc:WallTextureEnum ; - rdfs:label "rosebud stomp" . +nmdc:metatranscriptome_activity_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "metatranscriptome_activity_set" ; + rdfs:range nmdc:MetatranscriptomeActivity ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of metatranscriptome analysis activities." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WallTextureEnum ; - rdfs:label "skip trowel" . +nmdc:mgnify_project_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "mgnify_project_identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^mgnify.proj:[A-Z]+[0-9]+$" ] ) ] ; + rdfs:subPropertyOf nmdc:mgnify_identifiers, + nmdc:study_identifiers ; + skos:definition "identifiers for corresponding project in MGnify" ; + skos:inScheme nmdc:external_identifiers . - a owl:Class, - nmdc:WallTextureEnum ; - rdfs:label "smooth" . +nmdc:micro_biomass_c_meth a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "micro_biomass_c_meth" ; + dcterms:title "microbial biomass carbon method" ; + rdfs:seeAlso ; + skos:definition "Reference or method used in determining microbial biomass carbon" ; + skos:inScheme ; + skos:note "required if \"microbial_biomass_c\" is provided" ; + sh:order 11 . - a owl:Class, - nmdc:WallTextureEnum ; - rdfs:label "stomp knockdown" . +nmdc:micro_biomass_n_meth a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "micro_biomass_n_meth" ; + dcterms:title "microbial biomass nitrogen method" ; + rdfs:seeAlso ; + skos:definition "Reference or method used in determining microbial biomass nitrogen" ; + skos:inScheme ; + skos:note "required if \"microbial_biomass_n\" is provided" ; + sh:order 13 . - a owl:Class, - nmdc:WallTextureEnum ; - rdfs:label "swirl" . +nmdc:microbial_biomass_c a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "microbial_biomass_c" ; + dcterms:title "microbial biomass carbon" ; + rdfs:seeAlso ; + skos:definition "The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer." ; + skos:inScheme ; + skos:note "If you provide this, correction factors used for conversion to the final units and method are required" ; + sh:order 10 . - a owl:Class, - nmdc:WaterFeatTypeEnum ; - rdfs:label "fountain" . +nmdc:microbial_biomass_n a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "microbial_biomass_n" ; + dcterms:title "microbial biomass nitrogen" ; + rdfs:seeAlso ; + skos:definition "The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer." ; + skos:inScheme ; + skos:note "If you provide this, correction factors used for conversion to the final units and method are required" ; + sh:order 12 . - a owl:Class, - nmdc:WaterFeatTypeEnum ; - rdfs:label "pool" . +nmdc:min_q_value a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "min_q_value" ; + rdfs:range linkml:Float ; + rdfs:seeAlso OBI:0001442 ; + skos:definition "smallest Q-Value associated with the peptide sequence as provided by MSGFPlus tool" ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:WaterFeatTypeEnum ; - rdfs:label "standing feature" . +nmdc:model a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "model" ; + rdfs:range nmdc:InstrumentModelEnum ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WaterFeatTypeEnum ; - rdfs:label "stream" . +nmdc:ncbi_project_name a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ncbi_project_name" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WaterFeatTypeEnum ; - rdfs:label "waterfall" . +nmdc:ncbi_taxonomy_name a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ncbi_taxonomy_name" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WeekdayEnum ; - rdfs:label "Friday" . +nmdc:neon_biosample_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "neon_biosample_identifiers" ; + rdfs:subPropertyOf nmdc:biosample_identifiers, + nmdc:neon_identifiers ; + skos:inScheme nmdc:external_identifiers . - a owl:Class, - nmdc:WeekdayEnum ; - rdfs:label "Monday" . +nmdc:neon_study_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "neon_study_identifiers" ; + rdfs:subPropertyOf nmdc:neon_identifiers, + nmdc:study_identifiers ; + skos:inScheme nmdc:external_identifiers . - a owl:Class, - nmdc:WeekdayEnum ; - rdfs:label "Saturday" . +nmdc:nom_analysis_activity_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "nom_analysis_activity_set" ; + rdfs:range nmdc:NomAnalysisActivity ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of natural organic matter (NOM) analysis activities." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WeekdayEnum ; - rdfs:label "Sunday" . +nmdc:non_microb_biomass a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "non_microb_biomass" ; + dcterms:title "non-microbial biomass" ; + rdfs:seeAlso , + ; + skos:definition "Amount of biomass; should include the name for the part of biomass measured, e.g.insect, plant, total. Can include multiple measurements separated by ;" ; + skos:inScheme ; + sh:order 8 . - a owl:Class, - nmdc:WeekdayEnum ; - rdfs:label "Thursday" . +nmdc:non_microb_biomass_method a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "non_microb_biomass_method" ; + dcterms:title "non-microbial biomass method" ; + rdfs:seeAlso ; + skos:definition "Reference or method used in determining biomass" ; + skos:inScheme ; + skos:note "required if \"non-microbial biomass\" is provided" ; + sh:order 9 . - a owl:Class, - nmdc:WeekdayEnum ; - rdfs:label "Tuesday" . +nmdc:notes a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "notes" ; + skos:definition "from study class" ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WeekdayEnum ; - rdfs:label "Wednesday" . +nmdc:num_16s a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "num_16s" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:WindowCondEnum ; - rdfs:label "damaged" . +nmdc:num_23s a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "num_23s" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:WindowCondEnum ; - rdfs:label "needs repair" . +nmdc:num_5s a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "num_5s" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:WindowCondEnum ; - rdfs:label "new" . +nmdc:num_t_rna a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "num_t_rna" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:WindowCondEnum ; - rdfs:label "rupture" . +nmdc:number_of_contig a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "number_of_contig" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:WindowCondEnum ; - rdfs:label "visible wear" . +nmdc:objective a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "objective" ; + rdfs:range linkml:String ; + skos:definition "The scientific objectives associated with the entity. It SHOULD correspond to scientific norms for objectives field in a structured abstract." ; + skos:inScheme nmdc:core ; + skos:mappingRelation . - a owl:Class, - nmdc:WindowCoverEnum ; - rdfs:label "blinds" . +nmdc:omics_processing_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "omics_processing_set" ; + rdfs:range nmdc:OmicsProcessing ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of omics processings within it." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WindowCoverEnum ; - rdfs:label "curtains" . +nmdc:omics_type a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "omics_type" ; + rdfs:range nmdc:ControlledTermValue ; + skos:definition "The type of omics data" ; + skos:editorialNote "was the range string at one point? the values in MongoDB don't look like NMDC classes" ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WindowCoverEnum ; - rdfs:label "none" . +nmdc:orcid a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "orcid" ; + rdfs:domain nmdc:PersonValue ; + rdfs:range linkml:String ; + skos:definition "The ORCID of a person." ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:WindowHorizPosEnum ; - rdfs:label "left" . +nmdc:org_nitro_method a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "org_nitro_method" ; + dcterms:title "organic nitrogen method" ; + rdfs:seeAlso , + ; + skos:definition "Method used for obtaining organic nitrogen" ; + skos:inScheme ; + skos:note "required if \"org_nitro\" is provided" ; + sh:order 14 . - a owl:Class, - nmdc:WindowHorizPosEnum ; - rdfs:label "middle" . +nmdc:other_treatment a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "other_treatment" ; + dcterms:title "other treatments" ; + rdfs:seeAlso ; + skos:definition "Other treatments applied to your samples that are not applicable to the provided fields" ; + skos:editorialNote "Values entered here will be used to determine potential new slots." ; + skos:inScheme ; + skos:note "This is an open text field to provide any treatments that cannot be captured in the provided slots." ; + sh:order 15 . - a owl:Class, - nmdc:WindowHorizPosEnum ; - rdfs:label "right" . +nmdc:output_base_count a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "output_base_count" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:read_qc_analysis_statistic ; + skos:definition "After QC analysis nucleotide base count number." ; + skos:inScheme nmdc:workflow_execution_activity . - a owl:Class, - nmdc:WindowLocEnum ; - rdfs:label "east" . - - a owl:Class, - nmdc:WindowLocEnum ; - rdfs:label "north" . - - a owl:Class, - nmdc:WindowLocEnum ; - rdfs:label "south" . - - a owl:Class, - nmdc:WindowLocEnum ; - rdfs:label "west" . - - a owl:Class, - nmdc:WindowMatEnum ; - rdfs:label "clad" . - - a owl:Class, - nmdc:WindowMatEnum ; - rdfs:label "fiberglass" . - - a owl:Class, - nmdc:WindowMatEnum ; - rdfs:label "metal" . - - a owl:Class, - nmdc:WindowMatEnum ; - rdfs:label "vinyl" . - - a owl:Class, - nmdc:WindowMatEnum ; - rdfs:label "wood" . +nmdc:output_read_bases a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "output_read_bases" ; + rdfs:range linkml:Float ; + skos:definition "TODO" ; + skos:inScheme nmdc:workflow_execution_activity . - a owl:Class, - nmdc:WindowTypeEnum ; - rdfs:label "fixed window" . +nmdc:output_read_count a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "output_read_count" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:read_qc_analysis_statistic ; + skos:definition "After QC analysis sequence count number." ; + skos:inScheme nmdc:workflow_execution_activity . - a owl:Class, - nmdc:WindowTypeEnum ; - rdfs:label "horizontal sash window" . +nmdc:pcr_cycles a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "pcr_cycles" ; + rdfs:range linkml:Integer ; + skos:exactMatch OBI:0002475 ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:WindowTypeEnum ; - rdfs:label "single-hung sash window" . +nmdc:peptide_sequence a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "peptide_sequence" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:WindowVertPosEnum ; - rdfs:label "bottom" . +nmdc:peptide_sequence_count a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "peptide_sequence_count" ; + rdfs:range linkml:Integer ; + skos:definition "count of peptide sequences grouped to the best_protein" ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:WindowVertPosEnum ; - rdfs:label "high" . +nmdc:peptide_spectral_count a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "peptide_spectral_count" ; + rdfs:range linkml:Integer ; + skos:definition "sum of filter passing MS2 spectra associated with the peptide sequence within a given LC-MS/MS data file" ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:WindowVertPosEnum ; - rdfs:label "low" . +nmdc:peptide_sum_masic_abundance a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "peptide_sum_masic_abundance" ; + rdfs:range linkml:Integer ; + skos:definition "combined MS1 extracted ion chromatograms derived from MS2 spectra associated with the peptide sequence from a given LC-MS/MS data file using the MASIC tool" ; + skos:inScheme nmdc:core . - a owl:Class, - nmdc:WindowVertPosEnum ; - rdfs:label "middle" . +nmdc:phase a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "phase" ; + rdfs:range [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Integer [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:maxInclusive 2 ] ) ] ) ] ; + skos:definition "The phase for a coding sequence entity. For example, phase of a CDS as represented in a GFF3 with a value of 0, 1 or 2." ; + skos:exactMatch ; + skos:inScheme nmdc:annotation . - a owl:Class, - nmdc:WindowVertPosEnum ; - rdfs:label "top" . +nmdc:planned_process_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "planned_process_set" ; + rdfs:range nmdc:PlannedProcess ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of planned processes within it." ; + skos:inScheme nmdc:nmdc ; + skos:note "PlannedProcess instances aggregated by this slot will require the designated_class slot" . - a owl:Class, - nmdc:YesNoEnum ; - rdfs:label "no" . +nmdc:pooling_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "pooling_set" ; + rdfs:range nmdc:Pooling ; + rdfs:subPropertyOf nmdc:object_set ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:YesNoEnum ; - rdfs:label "yes" . +nmdc:processed_sample_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "processed_sample_set" ; + rdfs:range nmdc:ProcessedSample ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of processed samples within it." ; + skos:inScheme nmdc:nmdc . -nmdc:all_proteins a owl:ObjectProperty, +nmdc:profile_image_url a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "all_proteins" ; - rdfs:range nmdc:GeneProduct ; - skos:definition "the list of protein identifiers that are associated with the peptide sequence" ; + rdfs:label "profile_image_url" ; + rdfs:domain nmdc:PersonValue ; + rdfs:range linkml:String ; + skos:definition "A url that points to an image of a person." ; skos:inScheme nmdc:core . -nmdc:alternative_names a owl:ObjectProperty, +nmdc:project_id a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "alternative_names" ; - rdfs:range linkml:String ; - skos:definition "A list of alternative names used to refer to the entity. The distinction between name and alternative names is application-specific." ; - skos:exactMatch dcterms:alternative, - skos:altLabel ; - skos:inScheme nmdc:basic_slots . + rdfs:label "project_id" ; + dcterms:title "project ID" ; + skos:definition "Proposal IDs or names associated with dataset" ; + skos:inScheme ; + sh:order 1 . -nmdc:bytes a owl:Class, - linkml:TypeDefinition ; - rdfs:subClassOf [ a owl:Restriction ; - owl:onDataRange nmdc:bytes ; - owl:onProperty linkml:topValue ; - owl:qualifiedCardinality 1 ] . +nmdc:proport_woa_temperature a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "proport_woa_temperature" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:nmdc . -nmdc:emsl_identifiers a owl:ObjectProperty, +nmdc:proposal_dna a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "emsl_identifiers" ; - skos:inScheme nmdc:external_identifiers . + rdfs:label "proposal_dna" ; + dcterms:title "DNA proposal ID" ; + skos:inScheme ; + skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; + sh:order 19 . -nmdc:gff_coordinate a owl:ObjectProperty, +nmdc:proposal_rna a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "gff_coordinate" ; - rdfs:range [ a rdfs:Datatype ; - owl:intersectionOf ( linkml:Integer [ a rdfs:Datatype ; - owl:onDatatype xsd:integer ; - owl:withRestrictions ( [ xsd:minInclusive 1 ] ) ] ) ] ; - skos:definition "A positive 1-based integer coordinate indicating start or end" ; - skos:inScheme nmdc:annotation ; - skos:note "For features that cross the origin of a circular feature (e.g. most bacterial genomes, plasmids, and some viral genomes), the requirement for start to be less than or equal to end is satisfied by making end = the position of the end + the length of the landmark feature." . + rdfs:label "proposal_rna" ; + dcterms:title "RNA proposal ID" ; + skos:inScheme ; + skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; + sh:order 19 . -nmdc:has_part a owl:ObjectProperty, +nmdc:protein_spectral_count a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "has_part" ; - rdfs:domain nmdc:NamedThing ; - rdfs:range nmdc:NamedThing ; - skos:inScheme nmdc:basic_slots ; - skos:note "originally limited to \"A pathway can be broken down to a series of reaction step\"" . + rdfs:label "protein_spectral_count" ; + rdfs:range linkml:Integer ; + skos:definition "sum of filter passing MS2 spectra associated with the best protein within a given LC-MS/MS data file" ; + skos:inScheme nmdc:core . -nmdc:has_participants a owl:ObjectProperty, +nmdc:protein_sum_masic_abundance a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "has_participants" ; - skos:exactMatch RO:0000057 ; - skos:inScheme nmdc:annotation . + rdfs:label "protein_sum_masic_abundance" ; + rdfs:range linkml:Integer ; + skos:definition "combined MS1 extracted ion chromatograms derived from MS2 spectra associated with the best protein from a given LC-MS/MS data file using the MASIC tool" ; + skos:inScheme nmdc:core . -nmdc:language_code a owl:Class, - linkml:TypeDefinition ; - rdfs:subClassOf [ a owl:Restriction ; - owl:onDataRange nmdc:language_code ; - owl:onProperty linkml:topValue ; - owl:qualifiedCardinality 1 ] . +nmdc:quality_control_report a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "quality_control_report" ; + rdfs:range nmdc:QualityControlReport ; + skos:inScheme nmdc:nmdc . -nmdc:mgnify_identifiers a owl:ObjectProperty, +nmdc:reaction_temperature a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "mgnify_identifiers" ; - rdfs:seeAlso ; - skos:inScheme nmdc:external_identifiers . + rdfs:label "reaction_temperature" ; + skos:inScheme nmdc:sample_prep . -nmdc:neon_identifiers a owl:ObjectProperty, +nmdc:reaction_time a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "neon_identifiers" ; - skos:definition "identifiers for entities according to NEON" ; - skos:inScheme nmdc:external_identifiers . + rdfs:label "reaction_time" ; + rdfs:range nmdc:QuantityValue ; + skos:inScheme nmdc:sample_prep . -nmdc:unit a owl:Class, - linkml:TypeDefinition ; - rdfs:subClassOf [ a owl:Restriction ; - owl:onDataRange nmdc:unit ; - owl:onProperty linkml:topValue ; - owl:qualifiedCardinality 1 ] . +nmdc:read_based_taxonomy_analysis_activity_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "read_based_taxonomy_analysis_activity_set" ; + rdfs:range nmdc:ReadBasedTaxonomyAnalysisActivity ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of read based analysis activities." ; + skos:inScheme nmdc:nmdc . -nmdc:websites a owl:ObjectProperty, +nmdc:read_qc_analysis_activity_set a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "websites" ; - rdfs:range linkml:String ; - skos:definition "A list of websites that are associated with the entity." ; - skos:inScheme nmdc:core . + rdfs:label "read_qc_analysis_activity_set" ; + rdfs:range nmdc:ReadQcAnalysisActivity ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of read QC analysis activities." ; + skos:inScheme nmdc:nmdc . - a owl:Class, - nmdc:BiosampleCategoryEnum ; - rdfs:label "NEON" . +nmdc:related_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "related_identifiers" ; + dcterms:title "Related Identifiers" ; + skos:definition "Identifiers assigned to a thing that is similar to that which is represented in NMDC. Related identifier are not an identical match and may have some variation." ; + skos:inScheme nmdc:nmdc . - a owl:ObjectProperty, +nmdc:replicate_number a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "investigation field" ; - skos:definition "field describing aspect of the investigation/study to which the sample belongs" ; - skos:inScheme . - -nmdc:AnonymousInstrument a owl:Class, - linkml:ClassDefinition ; - rdfs:label "AnonymousInstrument" ; - rdfs:subClassOf nmdc:InstrumentMixin ; - skos:definition "a tool, device or supplies-like thing that is used in a research setting but does not have a meaningful identifier" ; - skos:inScheme nmdc:core ; - skos:note "one would talk about the model number or broad category", - "this is more likely to be a low cost, interchangeable or even disposable item" . - -nmdc:BiosampleProcessing a owl:Class, - linkml:ClassDefinition ; - rdfs:label "BiosampleProcessing" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:Biosample ; - owl:onProperty nmdc:has_input ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:has_input ], - nmdc:PlannedProcess ; - skos:altLabel "material processing" ; - skos:broadMatch OBI:0000094 ; - skos:definition "A process that takes one or more biosamples as inputs and generates one or more biosamples as outputs. An example of an output includes samples cultivated from another sample." ; - skos:inScheme nmdc:nmdc . - -nmdc:CreditAssociation a owl:Class, - linkml:ClassDefinition ; - rdfs:label "CreditAssociation" ; - skos:altLabel "associated researchers", - "credit table", - "study role" ; - skos:definition "This class supports binding associated researchers to studies. There will be at least a slot for a CRediT Contributor Role (https://casrai.org/credit/) and for a person value Specifically see the associated researchers tab on the NMDC_SampleMetadata-V4_CommentsForUpdates at https://docs.google.com/spreadsheets/d/1INlBo5eoqn2efn4H2P2i8rwRBtnbDVTqXrochJEAPko/edit#gid=0" ; - skos:exactMatch prov:Association ; - skos:inScheme nmdc:nmdc . - -nmdc:DeviceTypeEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - . - -nmdc:FunctionalAnnotationTerm a owl:Class, - linkml:ClassDefinition ; - rdfs:label "FunctionalAnnotationTerm" ; - rdfs:subClassOf nmdc:OntologyClass ; - skos:altLabel "FunctionalAnnotation", - "function" ; - skos:definition "Abstract grouping class for any term/descriptor that can be applied to a functional unit of a genome (protein, ncRNA, complex)." ; - skos:inScheme nmdc:annotation . - -nmdc:GeolocationValue a owl:Class, - linkml:ClassDefinition ; - rdfs:label "GeolocationValue" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:latitude ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:has_raw_value ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:latitude ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:latitude ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:has_raw_value ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:has_raw_value ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:longitude ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:longitude ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:longitude ], - nmdc:AttributeValue ; - skos:definition "A normalized value for a location on the earth's surface" ; - skos:editorialNote "what did 'to_str: {latitude} {longitude}' mean?" ; - skos:inScheme nmdc:core ; - skos:mappingRelation . - -nmdc:LibraryTypeEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - . - -nmdc:MaterialSample a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MaterialSample" ; - dcterms:title "Material sample" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - nmdc:NamedThing ; - skos:altLabel "Material entity" ; - skos:inScheme nmdc:sample_prep . - -nmdc:OrganismCountEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - . - -nmdc:SampleTypeEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - . - -nmdc:StatusEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - . - -nmdc:StudyCategoryEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - . + rdfs:label "replicate_number" ; + dcterms:title "replicate number" ; + skos:definition "If sending biological replicates, indicate the rep number here." ; + skos:inScheme ; + skos:note "This will guide staff in ensuring your samples are blocked & randomized correctly" ; + sh:order 6 . -nmdc:amount_collected a owl:ObjectProperty, +nmdc:rna_absorb1 a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "amount_collected" ; - dcterms:title "amount collected" ; - rdfs:range nmdc:QuantityValue ; - skos:inScheme nmdc:sample_prep . + rdfs:label "rna_absorb1" ; + dcterms:title "RNA absorbance 260/280" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:biomaterial_purity ; + skos:definition "260/280 measurement of RNA sample purity" ; + skos:inScheme ; + skos:note "Recommended value is between 1 and 3." ; + sh:order 7 . -nmdc:analysis_identifiers a owl:ObjectProperty, +nmdc:rna_absorb2 a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "analysis_identifiers" ; - rdfs:subPropertyOf nmdc:external_database_identifiers ; - skos:inScheme nmdc:external_identifiers . + rdfs:label "rna_absorb2" ; + dcterms:title "RNA absorbance 260/230" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:biomaterial_purity ; + skos:definition "260/230 measurement of RNA sample purity" ; + skos:inScheme ; + skos:note "Recommended value is between 1 and 3." ; + sh:order 8 . -nmdc:best_protein a owl:ObjectProperty, +nmdc:rna_collect_site a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "best_protein" ; - rdfs:range nmdc:GeneProduct ; - skos:definition "the specific protein identifier most correctly associated with the peptide sequence" ; - skos:inScheme nmdc:core . + rdfs:label "rna_collect_site" ; + dcterms:title "RNA collection site" ; + skos:definition "Provide information on the site your RNA sample was collected from" ; + skos:inScheme ; + sh:order 15 . -nmdc:collected_into a owl:ObjectProperty, +nmdc:rna_concentration a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "collected_into" ; - dcterms:title "collected into" ; - rdfs:range nmdc:MaterialContainer ; - skos:inScheme nmdc:sample_prep . - -nmdc:decimal_degree a owl:Class, - linkml:TypeDefinition ; - rdfs:subClassOf [ a owl:Restriction ; - owl:onDataRange nmdc:decimal_degree ; - owl:onProperty linkml:topValue ; - owl:qualifiedCardinality 1 ] . + rdfs:label "rna_concentration" ; + dcterms:title "RNA concentration in ng/ul" ; + rdfs:range [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Float [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:maxInclusive 1000 ] ) ] ) ] ; + rdfs:seeAlso nmdc:nucleic_acid_concentration ; + skos:inScheme ; + skos:note "Units must be in ng/uL. Enter the numerical part only. Must be calculated using a fluorometric method. Acceptable values are 0-2000." ; + sh:order 5 . -nmdc:designated_class a owl:ObjectProperty, +nmdc:rna_container_id a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "designated_class" ; - rdfs:range linkml:Uriorcurie ; - rdfs:seeAlso , - ; - skos:inScheme nmdc:nmdc ; - skos:note "MAM prefers to use this functionality in a `type` class and to eliminate '...type...' from the names of any NMDC-owned elements", - "this would be required on all instances in a polymorphic Database slot, like planned_process_set" . + rdfs:label "rna_container_id" ; + dcterms:title "RNA container label" ; + skos:inScheme ; + skos:note "Must be unique across all tubes and plates, and <20 characters. All samples in a plate should have the same plate label." ; + sh:order 9 . -nmdc:email a owl:ObjectProperty, +nmdc:rna_isolate_meth a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "email" ; - rdfs:range linkml:String ; - skos:definition "An email address for an entity such as a person. This should be the primary email address used." ; - skos:inScheme nmdc:core . + rdfs:label "rna_isolate_meth" ; + dcterms:title "RNA isolation method" ; + skos:definition "Describe the method/protocol/kit used to extract DNA/RNA." ; + skos:inScheme ; + sh:order 16 . -nmdc:end a owl:ObjectProperty, +nmdc:rna_organisms a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "end" ; - rdfs:subPropertyOf nmdc:gff_coordinate ; - skos:closeMatch ; - skos:definition "The end of the feature in positive 1-based integer coordinates" ; - skos:inScheme nmdc:annotation ; - skos:note "- \"constraint: end > start\" - \"For features that cross the origin of a circular feature, end = the position of the end + the length of the landmark feature.\"" . + rdfs:label "rna_organisms" ; + dcterms:title "RNA expected organisms" ; + skos:definition "List any organisms known or suspected to grow in co-culture, as well as estimated % of the organism in that culture." ; + skos:inScheme ; + sh:order 14 . -nmdc:ended_at_time a owl:ObjectProperty, +nmdc:rna_project_contact a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "ended_at_time" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$" ] ) ] ; - skos:editorialNote "The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now." ; - skos:inScheme nmdc:prov ; - skos:mappingRelation prov:endedAtTime . - -nmdc:execution_resource a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "execution_resource" ; - rdfs:subPropertyOf nmdc:attribute ; - skos:inScheme nmdc:core . + rdfs:label "rna_project_contact" ; + dcterms:title "RNA seq project contact" ; + skos:inScheme ; + skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; + sh:order 18 . -nmdc:git_url a owl:ObjectProperty, +nmdc:rna_samp_id a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "git_url" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf nmdc:attribute ; - skos:inScheme nmdc:core . + rdfs:label "rna_samp_id" ; + dcterms:title "RNA sample ID" ; + skos:inScheme ; + skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; + sh:order 3 . -nmdc:gold_biosample_identifiers a owl:ObjectProperty, +nmdc:rna_sample_format a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "gold_biosample_identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^gold:Gb[0-9]+$" ] ) ] ; - rdfs:subPropertyOf nmdc:biosample_identifiers, - nmdc:gold_identifiers ; - skos:definition "identifiers for corresponding sample in GOLD" ; - skos:inScheme nmdc:external_identifiers . + rdfs:label "rna_sample_format" ; + dcterms:title "RNA sample format" ; + rdfs:range nmdc:RnaSampleFormatEnum ; + skos:definition "Solution in which the RNA sample has been suspended" ; + skos:inScheme ; + sh:order 12 . -nmdc:has_function a owl:ObjectProperty, +nmdc:rna_sample_name a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "has_function" ; + rdfs:label "rna_sample_name" ; + dcterms:title "RNA sample name" ; rdfs:range [ a rdfs:Datatype ; - owl:intersectionOf ( linkml:String [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^(KEGG_PATHWAY:\\w{2,4}\\d{5}|KEGG.REACTION:R\\d+|RHEA:\\d{5}|MetaCyc:[A-Za-z0-9+_.%-:]+|EC:\\d{1,2}(\\.\\d{0,3}){0,3}|GO:\\d{7}|MetaNetX:(MNXR\\d+|EMPTY)|SEED:\\w+|KEGG\\.ORTHOLOGY:K\\d+|EGGNOG:\\w+|PFAM:PF\\d{5}|TIGRFAM:TIGR\\d+|SUPFAM:\\w+|CATH:[1-6]\\.[0-9]+\\.[0-9]+\\.[0-9]+|PANTHER.FAMILY:PTHR\\d{5}(\\:SF\\d{1,3})?)$" ] ) ] ) ] ; - skos:editorialNote "and those are frequently fulltext, not CURIEs. MAM 2021-06-23", - "but is actually taking string arguments in MongoDB,", - "the range for has_function was asserted as functional_annotation_term/FunctionalAnnotationTerm," ; - skos:inScheme nmdc:annotation . + owl:intersectionOf ( [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:maxInclusive 2000 ] ) ] ) ] ; + skos:definition "Give the RNA sample a name that is meaningful to you. Sample names must be unique across all JGI projects and contain a-z, A-Z, 0-9, - and _ only." ; + skos:inScheme ; + sh:order 4 . -nmdc:has_unit a owl:ObjectProperty, +nmdc:rna_seq_project a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "has_unit" ; - rdfs:range nmdc:unit ; - skos:altLabel "scale" ; - skos:definition "Links a QuantityValue to a unit" ; - skos:inScheme nmdc:core ; - skos:mappingRelation , - . + rdfs:label "rna_seq_project" ; + dcterms:title "RNA seq project ID" ; + skos:inScheme ; + skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; + sh:order 1 . -nmdc:insdc_bioproject_identifiers a owl:ObjectProperty, +nmdc:rna_seq_project_name a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "insdc_bioproject_identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^bioproject:PRJ[DEN][A-Z][0-9]+$" ] ) ] ; - rdfs:seeAlso , - ; - rdfs:subPropertyOf nmdc:insdc_identifiers, - nmdc:study_identifiers ; - skos:altLabel "DDBJ bioproject identifiers", - "NCBI bioproject identifiers" ; - skos:definition "identifiers for corresponding project in INSDC Bioproject" ; - skos:inScheme nmdc:external_identifiers ; - skos:note "these are distinct IDs from INSDC SRA/ENA project identifiers, but are usually(?) one to one" . + rdfs:label "rna_seq_project_name" ; + dcterms:title "RNA seq project name" ; + skos:inScheme ; + skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; + sh:order 2 . -nmdc:latitude a owl:ObjectProperty, +nmdc:rna_seq_project_pi a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "latitude" ; - rdfs:domain nmdc:GeolocationValue ; - rdfs:range nmdc:decimal_degree ; - skos:definition "latitude" ; - skos:inScheme nmdc:core ; - skos:mappingRelation . + rdfs:label "rna_seq_project_pi" ; + dcterms:title "RNA seq project PI" ; + skos:inScheme ; + skos:note "Do not edit these values. A template will be provided by NMDC in which these values have been pre-filled." ; + sh:order 17 . -nmdc:longitude a owl:ObjectProperty, +nmdc:rna_volume a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "longitude" ; - rdfs:domain nmdc:GeolocationValue ; - rdfs:range nmdc:decimal_degree ; - skos:definition "longitude" ; - skos:inScheme nmdc:core ; - skos:mappingRelation . + rdfs:label "rna_volume" ; + dcterms:title "RNA volume in ul" ; + rdfs:range [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Float [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:maxInclusive 1000 ] ) ] ) ] ; + skos:inScheme ; + skos:note "Units must be in uL. Enter the numerical part only. Value must be 0-1000. This form accepts values < 25, but JGI may refuse to process them unless permission has been granted by a project manager" ; + sh:order 6 . -nmdc:mass a owl:ObjectProperty, +nmdc:salinity_category a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "mass" ; - dcterms:title "mass" ; - rdfs:range nmdc:QuantityValue ; - skos:definition "A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter." ; - skos:exactMatch PATO:0000125 ; + rdfs:label "salinity_category" ; + rdfs:range linkml:String ; + rdfs:seeAlso ; + skos:definition "Categorical description of the sample's salinity. Examples: halophile, halotolerant, hypersaline, huryhaline" ; + skos:editorialNote "maps to gold:salinity" ; skos:inScheme nmdc:nmdc . -nmdc:material_input a owl:ObjectProperty, +nmdc:sample_collection_site a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "material_input" ; - dcterms:title "material input" ; - rdfs:range nmdc:MaterialSample ; - skos:inScheme nmdc:sample_prep . + rdfs:label "sample_collection_site" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:nmdc . -nmdc:notes a owl:ObjectProperty, +nmdc:sample_shipped a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "notes" ; - skos:definition "from study class" ; - skos:inScheme nmdc:nmdc . + rdfs:label "sample_shipped" ; + dcterms:title "sample shipped amount" ; + skos:definition "The total amount or size (volume (ml), mass (g) or area (m2) ) of sample sent to EMSL." ; + skos:inScheme ; + skos:note "This field is only required when completing metadata for samples being submitted to EMSL for analyses." ; + sh:order 3 . -nmdc:orcid a owl:ObjectProperty, +nmdc:sample_type a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "orcid" ; - rdfs:domain nmdc:PersonValue ; - rdfs:range linkml:String ; - skos:definition "The ORCID of a person." ; - skos:inScheme nmdc:core . + rdfs:label "sample_type" ; + dcterms:title "sample type" ; + rdfs:range nmdc:SampleTypeEnum ; + skos:definition "Type of sample being submitted" ; + skos:inScheme ; + skos:note "This can vary from 'environmental package' if the sample is an extraction." ; + sh:order 2 . -nmdc:reaction_time a owl:ObjectProperty, +nmdc:sampling_method a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "reaction_time" ; - rdfs:range nmdc:QuantityValue ; + rdfs:label "sampling_method" ; + dcterms:title "sampling method" ; + rdfs:range nmdc:SamplingMethodEnum ; skos:inScheme nmdc:sample_prep . -nmdc:related_identifiers a owl:ObjectProperty, +nmdc:separation_method a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "related_identifiers" ; - dcterms:title "Related Identifiers" ; - skos:definition "Identifiers assigned to a thing that is similar to that which is represented in NMDC. Related identifier are not an identical match and may have some variation." ; + rdfs:label "separation_method" ; + rdfs:range nmdc:SeparationMethodEnum ; + skos:definition "The method that was used to separate a substance from a solution or mixture." ; skos:inScheme nmdc:nmdc . nmdc:seqid a owl:ObjectProperty, @@ -13801,6 +15084,18 @@ nmdc:seqid a owl:ObjectProperty, skos:definition "The ID of the landmark used to establish the coordinate system for the current feature." ; skos:inScheme nmdc:annotation . +nmdc:smarts_string a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "smarts_string" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:annotation . + +nmdc:soluble_iron_micromol a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "soluble_iron_micromol" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:nmdc . + nmdc:start a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "start" ; @@ -13809,817 +15104,8372 @@ nmdc:start a owl:ObjectProperty, skos:definition "The start of the feature in positive 1-based integer coordinates" ; skos:inScheme nmdc:annotation . -nmdc:started_at_time a owl:ObjectProperty, +nmdc:start_date a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "started_at_time" ; - rdfs:range [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$" ] ) ] ; - skos:editorialNote "The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now." ; - skos:inScheme nmdc:prov ; - skos:mappingRelation prov:startedAtTime . + rdfs:label "start_date" ; + rdfs:range linkml:String ; + skos:definition "The date on which any process or activity was started" ; + skos:inScheme nmdc:basic_slots ; + skos:note "The date should be formatted as YYYY-MM-DD", + "We are using string representations of dates until all components of our ecosystem can handle ISO 8610 dates" . -nmdc:term a owl:ObjectProperty, +nmdc:start_date_inc a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "term" ; - rdfs:domain nmdc:ControlledTermValue ; - rdfs:range nmdc:OntologyClass ; - skos:definition "pointer to an ontology class" ; - skos:editorialNote "removed 'slot_uri: rdf:type'" ; - skos:inScheme nmdc:core . + rdfs:label "start_date_inc" ; + dcterms:title "incubation start date" ; + rdfs:seeAlso ; + skos:definition "Date the incubation was started. Only relevant for incubation samples." ; + skos:editorialNote "MIxS collection_date accepts (truncated) ISO8601. DH taking arbitrary precision date only" ; + skos:inScheme ; + skos:note "Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable." ; + sh:order 4 . -nmdc:was_generated_by a owl:ObjectProperty, +nmdc:start_time_inc a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "was_generated_by" ; - rdfs:range nmdc:Activity ; - skos:inScheme nmdc:prov ; - skos:mappingRelation prov:wasGeneratedBy . + rdfs:label "start_time_inc" ; + dcterms:title "incubation start time, GMT" ; + rdfs:seeAlso ; + skos:definition "Time the incubation was started. Only relevant for incubation samples." ; + skos:editorialNote "MIxS collection_date accepts (truncated) ISO8601. DH taking seconds optional time only" ; + skos:inScheme ; + skos:note "Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter" ; + sh:order 5 . - a owl:Class, - nmdc:DoiProviderEnum, - nmdc:ProcessingInstitutionEnum ; - rdfs:label "EMSL", - "emsl" . +nmdc:status a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "status" ; + rdfs:range nmdc:StatusEnum ; + skos:inScheme nmdc:nmdc . + +nmdc:stoichiometry a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "stoichiometry" ; + rdfs:range linkml:Integer ; + skos:definition "from reaction participant class" ; + skos:inScheme nmdc:annotation . + +nmdc:strand a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "strand" ; + skos:definition "The strand on which a feature is located. Has a value of '+' (sense strand or forward strand) or '-' (anti-sense strand or reverse strand)." ; + skos:exactMatch ; + skos:inScheme nmdc:annotation . + +nmdc:study_category a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "study_category" ; + rdfs:range nmdc:StudyCategoryEnum ; + skos:definition "The type of research initiative" ; + skos:inScheme nmdc:nmdc . + +nmdc:study_set a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "study_set" ; + rdfs:range nmdc:Study ; + rdfs:subPropertyOf nmdc:object_set ; + skos:definition "This property links a database object to the set of studies within it." ; + skos:inScheme nmdc:nmdc . + +nmdc:subject a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "subject" ; + rdfs:range nmdc:GeneProduct ; + skos:inScheme nmdc:annotation . + +nmdc:subsurface_depth a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "subsurface_depth" ; + rdfs:range nmdc:QuantityValue ; + skos:inScheme nmdc:nmdc . + +nmdc:technical_reps a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "technical_reps" ; + dcterms:title "number technical replicate" ; + skos:definition "If sending technical replicates of the same sample, indicate the replicate count." ; + skos:inScheme ; + skos:note "This field is only required when completing metadata for samples being submitted to EMSL for analyses." ; + sh:order 5 . + +nmdc:temperature a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "temperature" ; + dcterms:contributor ORCID:0000-0002-8683-0050, + ORCID:0009-0001-1555-1601 ; + rdfs:range nmdc:QuantityValue ; + skos:definition "The value of a temperature measurement or temperature used in a process." ; + skos:editorialNote "Not to be confused with the MIXS:0000113" ; + skos:inScheme nmdc:nmdc . + +nmdc:title a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "title" ; + rdfs:range linkml:String ; + skos:definition "A name given to the entity that differs from the name/label programmatically assigned to it. For example, when extracting study information for GOLD, the GOLD system has assigned a name/label. However, for display purposes, we may also wish the capture the title of the proposal that was used to fund the study." ; + skos:exactMatch dcterms:title ; + skos:inScheme nmdc:basic_slots . + +nmdc:too_short_contig_num a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "too_short_contig_num" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:total_bases a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "total_bases" ; + skos:inScheme nmdc:core . + +nmdc:unbinned_contig_num a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "unbinned_contig_num" ; + rdfs:range linkml:Integer ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:vendor a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "vendor" ; + rdfs:range nmdc:InstrumentVendorEnum ; + skos:inScheme nmdc:nmdc . + +nmdc:was_informed_by a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "was_informed_by" ; + rdfs:range nmdc:Activity ; + skos:inScheme nmdc:prov ; + skos:mappingRelation prov:wasInformedBy . + + a owl:Class, + nmdc:DoiProviderEnum, + nmdc:ProcessingInstitutionEnum ; + rdfs:label "EMSL", + "emsl" ; + rdfs:subClassOf nmdc:DoiProviderEnum, + nmdc:ProcessingInstitutionEnum . a owl:Class, nmdc:DoiProviderEnum, nmdc:ProcessingInstitutionEnum ; rdfs:label "JGI", - "jgi" . + "jgi" ; + rdfs:subClassOf nmdc:DoiProviderEnum, + nmdc:ProcessingInstitutionEnum . linkml:topValue a owl:DatatypeProperty ; rdfs:label "value" . -nmdc:Activity a owl:Class, + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "air_temp_regm" ; + dcterms:title "air temperature regimen" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "air temperature regimen" ; + skos:definition "Information about treatment involving an exposure to varying temperatures; should include the temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include different temperature regimens" ; + skos:inScheme ; + nmdc:expected_value "temperature value;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "meter" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "humidity_regm" ; + dcterms:title "humidity regimen" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "humidity regimen" ; + skos:definition "Information about treatment involving an exposure to varying degree of humidity; information about treatment involving use of growth hormones; should include amount of humidity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; + skos:inScheme ; + nmdc:expected_value "humidity value;treatment interval and duration" ; + nmdc:occurrence "m" ; + nmdc:preferred_unit "gram per cubic meter" . + +nmdc:ChemicalEntity a owl:Class, linkml:ClassDefinition ; - rdfs:label "Activity" ; + rdfs:label "ChemicalEntity" ; + rdfs:seeAlso ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:smiles ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:inchi ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:inchi_key ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:chemical_formula ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:inchi_key ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:chemical_formula ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:inchi ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:inchi_key ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:smiles ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:inchi ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:chemical_formula ], + nmdc:OntologyClass ; + skos:altLabel "chemical", + "chemical compound", + "chemical substance", + "metabolite" ; + skos:definition "An atom or molecule that can be represented with a chemical formula. Include lipids, glycans, natural products, drugs. There may be different terms for distinct acid-base forms, protonation states" ; + skos:exactMatch ; + skos:inScheme nmdc:core ; + skos:note "As with the parent OntologyClass, we will not assign an nmdc id pattern or typecode to this class." . + +nmdc:CollectingBiosamplesFromSite a owl:Class, + linkml:ClassDefinition ; + rdfs:label "CollectingBiosamplesFromSite" ; + dcterms:title "Collecting Biosamples From Site" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Biosample ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Site ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:has_output ], + nmdc:PlannedProcess ; + skos:closeMatch OBI:0000744 ; + skos:inScheme nmdc:nmdc ; + skos:note "this illustrates implementing a Biosample relation with a process class" . + +nmdc:CreditAssociation a owl:Class, + linkml:ClassDefinition ; + rdfs:label "CreditAssociation" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom nmdc:PersonValue ; + owl:onProperty nmdc:applies_to_person ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:CreditEnum ; + owl:onProperty nmdc:applied_roles ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:applies_to_person ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:applied_roles ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:applies_to_person ] ; + skos:altLabel "associated researchers", + "credit table", + "study role" ; + skos:definition "This class supports binding associated researchers to studies. There will be at least a slot for a CRediT Contributor Role (https://casrai.org/credit/) and for a person value Specifically see the associated researchers tab on the NMDC_SampleMetadata-V4_CommentsForUpdates at https://docs.google.com/spreadsheets/d/1INlBo5eoqn2efn4H2P2i8rwRBtnbDVTqXrochJEAPko/edit#gid=0" ; + skos:exactMatch prov:Association ; + skos:inScheme nmdc:nmdc . + +nmdc:FieldResearchSite a owl:Class, + linkml:ClassDefinition ; + rdfs:label "FieldResearchSite" ; + dcterms:title "Field Research Site" ; rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:habitat ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:part_of ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:NamedThing ; + owl:onProperty nmdc:part_of ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:habitat ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:GeolocationValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:habitat ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + nmdc:Site ; + skos:altLabel "research plot" ; + skos:definition "A site, outside of a laboratory, from which biosamples may be collected." ; + skos:inScheme nmdc:nmdc ; + skos:note "In Bioscales, one might say that rhizosphere soil and bulk soil from around the same plant were obtained at the same site. In this case, the site would correspond to one tree.", + "Provides grouping of biosamples at level that's more specific than belonging to the same study", + "be very clear that this could be part of a larger site", + "might correspond to GOLD's identifier on a page like https://gold.jgi.doe.gov/biosample?id=Gb0305833" . + +nmdc:GeolocationValue a owl:Class, + linkml:ClassDefinition ; + rdfs:label "GeolocationValue" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:longitude ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:latitude ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_raw_value ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:has_raw_value ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:latitude ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:longitude ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:latitude ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:longitude ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:has_raw_value ], + nmdc:AttributeValue ; + skos:definition "A normalized value for a location on the earth's surface" ; + skos:editorialNote "what did 'to_str: {latitude} {longitude}' mean?" ; + skos:inScheme nmdc:core ; + skos:mappingRelation . + +nmdc:MaterialEntity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MaterialEntity" ; + dcterms:title "Material Entity" ; + rdfs:subClassOf nmdc:NamedThing ; + skos:altLabel "Material", + "Physical entity" ; + skos:inScheme nmdc:core . + +nmdc:OmicsProcessing a owl:Class, + linkml:ClassDefinition ; + rdfs:label "OmicsProcessing" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:instrument_name ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:add_date ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ncbi_project_name ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:add_date ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:insdc_experiment_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:insdc_bioproject_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^insdc.sra:(E|D|S)RX[0-9]{6,}$" ] ) ] ; + owl:onProperty nmdc:insdc_experiment_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ncbi_project_name ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:add_date ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^nmdc:(bsm|procsm)-[0-9][a-z]{0,6}[0-9]-[A-Za-z0-9]{1,}(\\.[A-Za-z0-9]{1,})*(_[A-Za-z0-9_\\.-]+)?$" ] ) ] ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^gold:Gp[0-9]+$" ] ) ] ; + owl:onProperty nmdc:gold_sequencing_project_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ControlledTermValue ; + owl:onProperty nmdc:omics_type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:omics_type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gold_sequencing_project_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gold_sequencing_project_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom [ owl:intersectionOf ( nmdc:Study [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^nmdc:sty-[0-9][a-z]{0,6}[0-9]-[A-Za-z0-9]{1,}(\\.[A-Za-z0-9]{1,})*(_[A-Za-z0-9_\\.-]+)?$" ] ) ] ) ] ; + owl:onProperty nmdc:part_of ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:principal_investigator ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:instrument_name ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:insdc_experiment_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:processing_institution ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:PersonValue ; + owl:onProperty nmdc:principal_investigator ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:mod_date ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:processing_institution ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:insdc_bioproject_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:part_of ], + [ a owl:Restriction ; + owl:allValuesFrom [ owl:intersectionOf ( nmdc:DataObject [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^nmdc:dobj-[0-9][a-z]{0,6}[0-9]-[A-Za-z0-9]{1,}(\\.[A-Za-z0-9]{1,})*(_[A-Za-z0-9_\\.-]+)?$" ] ) ] ) ] ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:mod_date ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:ncbi_project_name ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^bioproject:PRJ[DEN][A-Z][0-9]+$" ] ) ] ; + owl:onProperty nmdc:insdc_bioproject_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:principal_investigator ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ProcessingInstitutionEnum ; + owl:onProperty nmdc:processing_institution ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:omics_type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:instrument_name ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:mod_date ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + nmdc:PlannedProcess ; + skos:altLabel "experiment", + "omics assay", + "sequencing project" ; + skos:broadMatch ISA:Assay, + OBI:0000070 ; + skos:definition "The methods and processes used to generate omics data from a biosample or organism." ; + skos:inScheme nmdc:nmdc ; + skos:note "The ID prefix for objects coming from GOLD will be gold:Gp" . + +nmdc:ReactionParticipant a owl:Class, + linkml:ClassDefinition ; + rdfs:label "ReactionParticipant" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:stoichiometry ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ChemicalEntity ; + owl:onProperty nmdc:chemical ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:stoichiometry ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:stoichiometry ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:chemical ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:chemical ] ; + skos:definition "Instances of this link a reaction to a chemical entity participant" ; + skos:inScheme nmdc:annotation . + +nmdc:SamplingMethodEnum a owl:Class, + linkml:EnumDefinition ; + linkml:permissible_values . + +nmdc:SeparationMethodEnum a owl:Class, + linkml:EnumDefinition ; + linkml:permissible_values . + +nmdc:all_proteins a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "all_proteins" ; + rdfs:range nmdc:GeneProduct ; + skos:definition "the list of protein identifiers that are associated with the peptide sequence" ; + skos:inScheme nmdc:core . + +nmdc:doi_category a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "doi_category" ; + rdfs:domain nmdc:Doi ; + rdfs:range nmdc:DoiCategoryEnum ; + skos:definition "The resource type the corresponding doi resolves to." ; + skos:inScheme nmdc:nmdc . + +nmdc:doi_provider a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "doi_provider" ; + rdfs:domain nmdc:Doi ; + rdfs:range nmdc:DoiProviderEnum ; + skos:closeMatch NCIT:C74932 ; + skos:definition "The authority, or organization, the DOI is associated with." ; + skos:inScheme nmdc:nmdc . + +nmdc:gold_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gold_identifiers" ; + rdfs:seeAlso ; + skos:inScheme nmdc:external_identifiers . + +nmdc:instrument_used a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "instrument_used" ; + rdfs:range nmdc:AnonymousInstrument ; + skos:definition "The device or tool that performed or aided in performing a process." ; + skos:inScheme nmdc:basic_slots ; + skos:note "not to be confused with 'used' which currently has a string range" . + +nmdc:read_qc_analysis_statistic a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "read_qc_analysis_statistic" ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:websites a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "websites" ; + rdfs:range [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:String [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^[Hh][Tt][Tt][Pp][Ss]?:\\/\\/(?!.*[Dd][Oo][Ii]\\.[Oo][Rr][Gg]).*$" ] ) ] ) ] ; + skos:definition "A list of websites that are associated with the entity." ; + skos:inScheme nmdc:core ; + skos:note "DOIs should not be included as websites. Instead, use the associated_dois slot." . + +nmdc:BiosampleProcessing a owl:Class, + linkml:ClassDefinition ; + rdfs:label "BiosampleProcessing" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom nmdc:Biosample ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_input ], + nmdc:PlannedProcess ; + skos:altLabel "material processing" ; + skos:broadMatch OBI:0000094 ; + skos:definition "A process that takes one or more biosamples as inputs and generates one or more biosamples as outputs. An example of an output includes samples cultivated from another sample." ; + skos:inScheme nmdc:nmdc . + +nmdc:ContainerCategoryEnum a owl:Class, + linkml:EnumDefinition ; + linkml:permissible_values . + +nmdc:DeviceTypeEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + . + +nmdc:Extraction a owl:Class, + linkml:ClassDefinition ; + rdfs:label "Extraction" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom nmdc:QualityControlReport ; + owl:onProperty nmdc:quality_control_report ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:extraction_method ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:extraction_target ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:quality_control_report ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:protocol_link ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:extraction_method ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:extraction_target ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:input_mass ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Protocol ; + owl:onProperty nmdc:protocol_link ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:protocol_link ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:processing_institution ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:processing_institution ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:quality_control_report ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty nmdc:input_mass ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ProcessingInstitutionEnum ; + owl:onProperty nmdc:processing_institution ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:input_mass ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ExtractionTargetEnum ; + owl:onProperty nmdc:extraction_target ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:extraction_method ], + nmdc:BiosampleProcessing ; + skos:definition "A material separation in which a desired component of an input material is separated from the remainder." ; + skos:exactMatch OBI:0302884, + nmdc:Extraction ; + skos:inScheme nmdc:nmdc . + +nmdc:LibraryPreparation a owl:Class, + linkml:ClassDefinition ; + rdfs:label "LibraryPreparation" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom nmdc:LibraryTypeEnum ; + owl:onProperty nmdc:library_type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:library_preparation_kit ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:library_preparation_kit ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:pcr_cycles ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty nmdc:pcr_cycles ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:processing_institution ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:library_type ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:library_preparation_kit ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:processing_institution ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:library_type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:pcr_cycles ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ProcessingInstitutionEnum ; + owl:onProperty nmdc:processing_institution ], + nmdc:BiosampleProcessing ; + skos:altLabel "LibraryConstruction" ; + skos:closeMatch OBI:0000711 ; + skos:exactMatch nmdc:LibraryPreparation ; + skos:inScheme nmdc:nmdc ; + skos:note "OBI:0000711 specifies a DNA input (but not ONLY a DNA input)" . + +nmdc:Pooling a owl:Class, + linkml:ClassDefinition ; + rdfs:label "Pooling" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + nmdc:BiosampleProcessing ; + skos:definition "physical combination of several instances of like material." ; + skos:exactMatch OBI:0600016, + nmdc:Pooling ; + skos:inScheme nmdc:nmdc . + +nmdc:dna_cont_type a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_cont_type" ; + dcterms:title "DNA container type" ; + rdfs:range nmdc:JgiContTypeEnum ; + skos:definition "Tube or plate (96-well)" ; + skos:inScheme ; + sh:order 10 . + +nmdc:gold_path_field a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gold_path_field" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf nmdc:attribute ; + skos:definition "This is a grouping for any of the gold path fields" ; + skos:inScheme nmdc:nmdc . + +nmdc:rna_cont_type a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "rna_cont_type" ; + dcterms:title "RNA container type" ; + rdfs:range nmdc:JgiContTypeEnum ; + skos:definition "Tube or plate (96-well)" ; + skos:inScheme ; + sh:order 10 . + +nmdc:rna_cont_well a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "rna_cont_well" ; + dcterms:title "RNA plate position" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^(?!A1|A12|H1|H12)(([A-H][1-9])|([A-H]1[0-2]))$" ] ) ] ; + skos:inScheme ; + skos:note "For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).", + "JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass validation.", + "Leave blank if the sample will be shipped in a tube.", + "Required when 'plate' is selected for container type." ; + sh:order 11 . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "biotic_regm" ; + dcterms:title "biotic regimen" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "biotic regimen" ; + skos:definition "Information about treatment(s) involving use of biotic factors, such as bacteria, viruses or fungi." ; + skos:inScheme ; + nmdc:expected_value "free text" ; + nmdc:occurrence "1" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "biotic_relationship" ; + dcterms:title "observed biotic relationship" ; + rdfs:range nmdc:BioticRelationshipEnum ; + rdfs:subPropertyOf ; + skos:altLabel "observed biotic relationship" ; + skos:definition "Description of relationship(s) between the subject organism and other organism(s) it is associated with. E.g., parasite on species X; mutualist with species Y. The target organism is the subject of the relationship, and the other organism(s) is the object" ; + skos:inScheme ; + nmdc:expected_value "enumeration" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "chimera_check" ; + dcterms:title "chimera check software" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "chimera check software" ; + skos:definition "Tool(s) used for chimera checking, including version number and parameters, to discover and remove chimeric sequences. A chimeric sequence is comprised of two or more phylogenetically distinct parent sequences." ; + skos:inScheme ; + nmdc:expected_value "name and version of software, parameters used" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "experimental_factor" ; + dcterms:title "experimental factor" ; + rdfs:range nmdc:ControlledTermValue ; + rdfs:subPropertyOf ; + skos:altLabel "experimental factor" ; + skos:definition "Experimental factors are essentially the variable aspects of an experiment design which can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). For a browser of EFO (v 2.95) terms, please see http://purl.bioontology.org/ontology/EFO; for a browser of OBI (v 2018-02-12) terms please see http://purl.bioontology.org/ontology/OBI" ; + skos:inScheme ; + nmdc:expected_value "text or EFO and/or OBI" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "geo_loc_name" ; + dcterms:title "geographic location (country and/or sea,region)" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "geographic location (country and/or sea,region)" ; + skos:definition "The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)" ; + skos:inScheme ; + nmdc:expected_value "country or sea name (INSDC or GAZ): region(GAZ), specific location name" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "growth_facil" ; + dcterms:title "growth facility" ; + rdfs:range nmdc:ControlledTermValue ; + rdfs:subPropertyOf ; + skos:altLabel "growth facility" ; + skos:definition "Type of facility where the sampled plant was grown; controlled vocabulary: growth chamber, open top chamber, glasshouse, experimental garden, field. Alternatively use Crop Ontology (CO) terms, see http://www.cropontology.org/ontology/CO_715/Crop%20Research" ; + skos:inScheme ; + nmdc:expected_value "free text or CO" ; + nmdc:occurrence "1" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "host_taxid" ; + dcterms:title "host taxid" ; + rdfs:range nmdc:ControlledIdentifiedTermValue ; + rdfs:subPropertyOf ; + skos:altLabel "host taxid" ; + skos:definition "NCBI taxon id of the host, e.g. 9606" ; + skos:inScheme ; + skos:note "Homo sapiens [NCBITaxon:9606] would be a reasonable has_raw_value" ; + nmdc:expected_value "NCBI taxon identifier" ; + nmdc:occurrence "1" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "investigation field" ; + skos:definition "field describing aspect of the investigation/study to which the sample belongs" ; + skos:inScheme . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "light_regm" ; + dcterms:title "light regimen" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "light regimen" ; + skos:definition "Information about treatment(s) involving exposure to light, including both light intensity and quality." ; + skos:inScheme ; + nmdc:expected_value "exposure type;light intensity;light quality" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "lux; micrometer, nanometer, angstrom" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "local_class" ; + dcterms:title "soil_taxonomic/local classification" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "soil_taxonomic/local classification" ; + skos:definition "Soil classification based on local soil classification system" ; + skos:inScheme ; + nmdc:expected_value "local classification name" ; + nmdc:occurrence "1" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "nucl_acid_amp" ; + dcterms:title "nucleic acid amplification" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "nucleic acid amplification" ; + skos:definition "A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the enzymatic amplification (PCR, TMA, NASBA) of specific nucleic acids" ; + skos:inScheme ; + nmdc:expected_value "PMID, DOI or URL" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "nucl_acid_ext" ; + dcterms:title "nucleic acid extraction" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "nucleic acid extraction" ; + skos:definition "A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the material separation to recover the nucleic acid fraction from a sample" ; + skos:inScheme ; + nmdc:expected_value "PMID, DOI or URL" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "pcr_cond" ; + dcterms:title "pcr conditions" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "pcr conditions" ; + skos:definition "Description of reaction conditions and components of PCR in the form of 'initial denaturation:94degC_1.5min; annealing=...'" ; + skos:inScheme ; + nmdc:expected_value "initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes;total cycles" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "pcr_primers" ; + dcterms:title "pcr primers" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "pcr primers" ; + skos:definition "PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters" ; + skos:inScheme ; + nmdc:expected_value "FWD: forward primer sequence;REV:reverse primer sequence" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "phosphate" ; + dcterms:title "phosphate" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "phosphate" ; + skos:definition "Concentration of phosphate" ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "micromole per liter" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_collec_method" ; + dcterms:title "sample collection method" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf ; + skos:altLabel "sample collection method" ; + skos:definition "The method employed for collecting the sample." ; + skos:inScheme ; + nmdc:expected_value "PMID,DOI,url , or text" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_size" ; + dcterms:title "amount or size of sample collected" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "amount or size of sample collected" ; + skos:definition "The total amount or size (volume (ml), mass (g) or area (m2) ) of sample collected." ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:preferred_unit "millliter, gram, milligram, liter" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_vol_we_dna_ext" ; + dcterms:title "sample volume or weight for DNA extraction" ; + rdfs:range nmdc:QuantityValue ; + rdfs:subPropertyOf ; + skos:altLabel "sample volume or weight for DNA extraction" ; + skos:definition "Volume (ml) or mass (g) of total collected sample processed for DNA extraction. Note: total sample collected should be entered under the term Sample Size (MIXS:0000001)." ; + skos:inScheme ; + nmdc:expected_value "measurement value" ; + nmdc:preferred_unit "millliter, gram, milligram, square centimeter" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "seq_meth" ; + dcterms:title "sequencing method" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "sequencing method" ; + skos:definition "Sequencing machine used. Where possible the term should be taken from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)." ; + skos:inScheme ; + nmdc:expected_value "Text or OBI" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "seq_quality_check" ; + dcterms:title "sequence quality check" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "sequence quality check" ; + skos:definition "Indicate if the sequence has been called by automatic systems (none) or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms). Applied only for sequences that are not submitted to SRA,ENA or DRA" ; + skos:inScheme ; + nmdc:expected_value "none or manually edited" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "soil_type" ; + dcterms:title "soil type" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "soil type" ; + skos:definition "Description of the soil type or classification. This field accepts terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple terms can be separated by pipes." ; + skos:inScheme ; + nmdc:expected_value "ENVO_00001998" ; + nmdc:occurrence "1" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "target_gene" ; + dcterms:title "target gene" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "target gene" ; + skos:definition "Targeted gene or locus name for marker gene studies" ; + skos:inScheme ; + nmdc:expected_value "gene name" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "target_subfragment" ; + dcterms:title "target subfragment" ; + rdfs:range nmdc:TextValue ; + rdfs:subPropertyOf ; + skos:altLabel "target subfragment" ; + skos:definition "Name of subfragment of a gene or locus. Important to e.g. identify special regions on marker genes like V6 on 16S rRNA" ; + skos:inScheme ; + nmdc:expected_value "gene fragment name" . + +nmdc:Doi a owl:Class, + linkml:ClassDefinition ; + rdfs:label "Doi" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom nmdc:DoiCategoryEnum ; + owl:onProperty nmdc:doi_category ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:doi_category ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:doi_provider ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:doi_value ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:doi_value ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:doi_provider ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:DoiProviderEnum ; + owl:onProperty nmdc:doi_provider ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Uriorcurie [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^doi:10.\\d{2,9}/.*$" ] ) ] ) ] ; + owl:onProperty nmdc:doi_value ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:doi_category ] ; + skos:altLabel "DOIs", + "digital object identifiers" ; + skos:definition "A centrally registered identifier symbol used to uniquely identify objects given by the International DOI Foundation. The DOI system is particularly used for electronic documents." ; + skos:exactMatch OBI:0002110 ; + skos:inScheme nmdc:nmdc . + +nmdc:LibraryTypeEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + . + +nmdc:MaterialSample a owl:Class, + linkml:ClassDefinition ; + rdfs:label "MaterialSample" ; + dcterms:title "Material sample" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + nmdc:NamedThing ; + skos:altLabel "Material entity" ; + skos:inScheme nmdc:sample_prep . + +nmdc:OrganismCountEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + . + +nmdc:ProcessedSample a owl:Class, + linkml:ClassDefinition ; + rdfs:label "ProcessedSample" ; + dcterms:title "Processed Sample" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:external_database_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:intersectionOf ( nmdc:external_identifier [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$" ] ) ] ) ] ; + owl:onProperty nmdc:external_database_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:dna_absorb1 ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Float [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:maxInclusive 2000 ] ) ] ) ] ; + owl:onProperty nmdc:dna_concentration ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:biomaterial_purity ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:dna_absorb1 ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:dna_concentration ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:biomaterial_purity ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:dna_concentration ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty nmdc:biomaterial_purity ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:dna_absorb1 ], + nmdc:MaterialEntity ; + skos:inScheme nmdc:core . + +nmdc:SampleTypeEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + . + +nmdc:StatusEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + . + +nmdc:StudyCategoryEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + . + +nmdc:add_date a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "add_date" ; + rdfs:range linkml:String ; + skos:definition "The date on which the information was added to the database." ; + skos:inScheme nmdc:nmdc . + +nmdc:ammonium_nitrogen a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ammonium_nitrogen" ; + dcterms:title "ammonium nitrogen" ; + rdfs:range nmdc:QuantityValue ; + rdfs:seeAlso ; + rdfs:subPropertyOf nmdc:attribute ; + skos:altLabel "NH4-N", + "ammonium_nitrogen" ; + skos:definition "Concentration of ammonium nitrogen in the sample" ; + skos:inScheme nmdc:nmdc ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "mg/kg" . + +nmdc:asm_score a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "asm_score" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "A score for comparing metagenomic assembly quality from same sample." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:best_protein a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "best_protein" ; + rdfs:range nmdc:GeneProduct ; + skos:definition "the specific protein identifier most correctly associated with the peptide sequence" ; + skos:inScheme nmdc:core . + +nmdc:biosample_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "biosample_identifiers" ; + rdfs:subPropertyOf nmdc:external_database_identifiers ; + skos:inScheme nmdc:external_identifiers . + +nmdc:contained_in a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "contained_in" ; + rdfs:range nmdc:ContainerCategoryEnum ; + skos:definition "A type of container. i.e. test tube, falcon tube, etc." ; + skos:inScheme nmdc:nmdc . + +nmdc:contig_bp a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "contig_bp" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Total size in bp of all contigs." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:contigs a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "contigs" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "The sum of the (length*log(length)) of all contigs, times some constant. Increase the contiguity, the score will increase" ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:ctg_l50 a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ctg_l50" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Given a set of contigs, the L50 is defined as the sequence length of the shortest contig at 50% of the total genome length." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:ctg_l90 a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ctg_l90" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all contigs of that length or longer contains at least 90% of the sum of the lengths of all contigs." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:ctg_logsum a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ctg_logsum" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Maximum contig length." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:ctg_max a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ctg_max" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Maximum contig length." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:ctg_n50 a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ctg_n50" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Given a set of contigs, each with its own length, the N50 count is defined as the smallest number_of_contigs whose length sum makes up half of genome size." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:ctg_n90 a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ctg_n90" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Given a set of contigs, each with its own length, the N90 count is defined as the smallest number of contigs whose length sum makes up 90% of genome size." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:ctg_powsum a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ctg_powsum" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Powersum of all contigs is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25)." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:dna_absorb1 a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_absorb1" ; + dcterms:title "DNA absorbance 260/280" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:biomaterial_purity ; + skos:definition "260/280 measurement of DNA sample purity" ; + skos:inScheme ; + skos:note "Recommended value is between 1 and 3." ; + sh:order 7 . + +nmdc:dna_concentration a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_concentration" ; + dcterms:title "DNA concentration in ng/ul" ; + rdfs:range [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Float [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:maxInclusive 2000 ] ) ] ) ] ; + rdfs:seeAlso nmdc:nucleic_acid_concentration ; + skos:inScheme ; + skos:note "Units must be in ng/uL. Enter the numerical part only. Must be calculated using a fluorometric method. Acceptable values are 0-2000." ; + sh:order 5 . + +nmdc:ended_at_time a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ended_at_time" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$" ] ) ] ; + skos:editorialNote "The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now." ; + skos:inScheme nmdc:prov ; + skos:mappingRelation prov:endedAtTime . + +nmdc:gap_pct a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gap_pct" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "The gap size percentage of all scaffolds." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:gc_avg a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gc_avg" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Average of GC content of all contigs." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:gc_std a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gc_std" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Standard deviation of GC content of all contigs." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:gold_analysis_project_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "gold_analysis_project_identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^gold:Ga[0-9]+$" ] ) ] ; + rdfs:subPropertyOf nmdc:analysis_identifiers, + nmdc:gold_identifiers ; + skos:definition "identifiers for corresponding analysis project in GOLD" ; + skos:inScheme nmdc:external_identifiers . + +nmdc:habitat a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "habitat" ; + rdfs:range linkml:String ; + skos:inScheme nmdc:nmdc . + +nmdc:has_calibration a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has_calibration" ; + rdfs:range linkml:String ; + skos:definition "A reference to a file that holds calibration information." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:insdc_assembly_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "insdc_assembly_identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^insdc.sra:[A-Z]+[0-9]+(\\.[0-9]+)?$" ] ) ] ; + rdfs:subPropertyOf nmdc:assembly_identifiers, + nmdc:insdc_identifiers ; + skos:inScheme nmdc:external_identifiers . + +nmdc:insdc_bioproject_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "insdc_bioproject_identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^bioproject:PRJ[DEN][A-Z][0-9]+$" ] ) ] ; + rdfs:seeAlso , + ; + rdfs:subPropertyOf nmdc:insdc_identifiers, + nmdc:study_identifiers ; + skos:altLabel "DDBJ bioproject identifiers", + "NCBI bioproject identifiers" ; + skos:definition "identifiers for corresponding project in INSDC Bioproject" ; + skos:inScheme nmdc:external_identifiers ; + skos:note "these are distinct IDs from INSDC SRA/ENA project identifiers, but are usually(?) one to one" . + +nmdc:lbc_thirty a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "lbc_thirty" ; + dcterms:title "lime buffer capacity (at 30 minutes)" ; + rdfs:range nmdc:QuantityValue ; + rdfs:seeAlso , + ; + rdfs:subPropertyOf nmdc:attribute ; + skos:altLabel "lbc30", + "lbc_thirty", + "lime buffer capacity (at 30 minutes)" ; + skos:definition "lime buffer capacity, determined after 30 minute incubation" ; + skos:inScheme nmdc:nmdc ; + skos:note "This is the mass of lime, in mg, needed to raise the pH of one kg of soil by one pH unit" ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "ppm CaCO3/pH" . + +nmdc:lbceq a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "lbceq" ; + dcterms:title "lime buffer capacity (after 5 day incubation)" ; + rdfs:range nmdc:QuantityValue ; + rdfs:seeAlso ; + rdfs:subPropertyOf nmdc:attribute ; + skos:altLabel "lbceq", + "lime buffer capacity (at 5-day equilibrium)" ; + skos:definition "lime buffer capacity, determined at equilibrium after 5 day incubation" ; + skos:inScheme nmdc:nmdc ; + skos:note "This is the mass of lime, in mg, needed to raise the pH of one kg of soil by one pH unit" ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "ppm CaCO3/pH" . + +nmdc:manganese a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "manganese" ; + dcterms:title "manganese" ; + rdfs:range nmdc:QuantityValue ; + rdfs:seeAlso ; + rdfs:subPropertyOf nmdc:attribute ; + skos:altLabel "manganese" ; + skos:definition "Concentration of manganese in the sample" ; + skos:inScheme nmdc:nmdc ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "mg/kg (ppm)" . + +nmdc:material_input a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "material_input" ; + dcterms:title "material input" ; + rdfs:range nmdc:MaterialSample ; + skos:inScheme nmdc:sample_prep . + +nmdc:mod_date a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "mod_date" ; + rdfs:range linkml:String ; + skos:definition "The last date on which the database information was modified." ; + skos:inScheme nmdc:nmdc . + +nmdc:nitrate_nitrogen a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "nitrate_nitrogen" ; + dcterms:title "nitrate_nitrogen" ; + rdfs:range nmdc:QuantityValue ; + rdfs:seeAlso ; + rdfs:subPropertyOf nmdc:attribute ; + skos:altLabel "NO3-N", + "nitrate_nitrogen" ; + skos:definition "Concentration of nitrate nitrogen in the sample" ; + skos:inScheme nmdc:nmdc ; + skos:note "often below some specified limit of detection" ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "mg/kg" . + +nmdc:nitrite_nitrogen a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "nitrite_nitrogen" ; + dcterms:title "nitrite_nitrogen" ; + rdfs:range nmdc:QuantityValue ; + rdfs:seeAlso ; + rdfs:subPropertyOf nmdc:attribute ; + skos:altLabel "NO2-N", + "nitrite_nitrogen" ; + skos:definition "Concentration of nitrite nitrogen in the sample" ; + skos:inScheme nmdc:nmdc ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "mg/kg" . + +nmdc:num_aligned_reads a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "num_aligned_reads" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "The sequence count number of input reads aligned to assembled contigs." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:num_input_reads a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "num_input_reads" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "The sequence count number of input reads for assembly." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:principal_investigator a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "principal_investigator" ; + rdfs:range nmdc:PersonValue ; + rdfs:subPropertyOf nmdc:attribute ; + skos:altLabel "PI" ; + skos:definition "Principal Investigator who led the study and/or generated the dataset." ; + skos:inScheme nmdc:nmdc . + +nmdc:protocol_link a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "protocol_link" ; + rdfs:range nmdc:Protocol ; + skos:inScheme nmdc:basic_slots . + +nmdc:scaf_bp a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "scaf_bp" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Total size in bp of all scaffolds." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:scaf_l50 a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "scaf_l50" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Given a set of scaffolds, the L50 is defined as the sequence length of the shortest scaffold at 50% of the total genome length." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:scaf_l90 a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "scaf_l90" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all scaffolds of that length or longer contains at least 90% of the sum of the lengths of all scaffolds." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:scaf_l_gt50k a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "scaf_l_gt50k" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Total size in bp of all scaffolds greater than 50 KB." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:scaf_logsum a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "scaf_logsum" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "The sum of the (length*log(length)) of all scaffolds, times some constant. Increase the contiguity, the score will increase" ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:scaf_max a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "scaf_max" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Maximum scaffold length." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:scaf_n50 a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "scaf_n50" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Given a set of scaffolds, each with its own length, the N50 count is defined as the smallest number of scaffolds whose length sum makes up half of genome size." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:scaf_n90 a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "scaf_n90" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Given a set of scaffolds, each with its own length, the N90 count is defined as the smallest number of scaffolds whose length sum makes up 90% of genome size." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:scaf_n_gt50k a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "scaf_n_gt50k" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Total sequence count of scaffolds greater than 50 KB." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:scaf_pct_gt50k a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "scaf_pct_gt50k" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Total sequence size percentage of scaffolds greater than 50 KB." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:scaf_powsum a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "scaf_powsum" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Powersum of all scaffolds is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25)." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:scaffolds a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "scaffolds" ; + rdfs:range linkml:Float ; + rdfs:subPropertyOf nmdc:metagenome_assembly_parameter ; + skos:definition "Total sequence count of all scaffolds." ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:started_at_time a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "started_at_time" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$" ] ) ] ; + skos:editorialNote "The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now." ; + skos:inScheme nmdc:prov ; + skos:mappingRelation prov:startedAtTime . + +nmdc:term a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "term" ; + rdfs:domain nmdc:ControlledTermValue ; + rdfs:range nmdc:OntologyClass ; + skos:definition "pointer to an ontology class" ; + skos:editorialNote "removed 'slot_uri: rdf:type'" ; + skos:inScheme nmdc:core . + +nmdc:version a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "version" ; + skos:inScheme nmdc:workflow_execution_activity . + +nmdc:volume a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "volume" ; + dcterms:contributor ORCID:0000-0002-8683-0050, + ORCID:0009-0001-1555-1601 ; + rdfs:range nmdc:QuantityValue ; + skos:definition "The volume of a substance." ; + skos:inScheme nmdc:nmdc . + +nmdc:zinc a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "zinc" ; + dcterms:title "zinc" ; + rdfs:range nmdc:QuantityValue ; + rdfs:seeAlso ; + rdfs:subPropertyOf nmdc:attribute ; + skos:altLabel "zinc" ; + skos:definition "Concentration of zinc in the sample" ; + skos:inScheme nmdc:nmdc ; + nmdc:expected_value "measurement value" ; + nmdc:occurrence "1" ; + nmdc:preferred_unit "mg/kg (ppm)" . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "samp_name" ; + dcterms:title "sample name" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf ; + skos:altLabel "sample name" ; + skos:definition "A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name." ; + skos:inScheme ; + nmdc:expected_value "text" . + +nmdc:Activity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "Activity" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$" ] ) ] ; + owl:onProperty nmdc:ended_at_time ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$" ] ) ] ; + owl:onProperty nmdc:started_at_time ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:used ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Activity ; + owl:onProperty nmdc:was_informed_by ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:was_informed_by ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:was_informed_by ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:started_at_time ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ended_at_time ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:used ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:started_at_time ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:used ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ended_at_time ] ; + skos:definition "Something that occurs over a period of time and acts upon or with entities; it may include consuming, processing, transforming, modifying, relocating, using, or generating entities." ; + skos:editorialNote "removed was_associated_with because we are trying to avoid instantiating id-less Agents" ; + skos:inScheme nmdc:prov ; + skos:mappingRelation prov:Activity ; + skos:note "to be replaced with PlannedProcess in the monterey-schema" . + +nmdc:OntologyClass a owl:Class, + linkml:ClassDefinition ; + rdfs:label "OntologyClass" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$" ] ) ] ; + owl:onProperty nmdc:id ], + nmdc:NamedThing ; + skos:editorialNote "The identifiers for terms from external ontologies can't have their ids constrained to the nmdc namespace" ; + skos:inScheme nmdc:core . + +nmdc:PersonValue a owl:Class, + linkml:ClassDefinition ; + rdfs:label "PersonValue" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:has_raw_value ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:profile_image_url ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:profile_image_url ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:profile_image_url ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:orcid ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:email ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:orcid ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_raw_value ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:String [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^[Hh][Tt][Tt][Pp][Ss]?:\\/\\/(?!.*[Dd][Oo][Ii]\\.[Oo][Rr][Gg]).*$" ] ) ] ) ] ; + owl:onProperty nmdc:websites ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:orcid ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:has_raw_value ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:websites ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:email ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:email ], + nmdc:AttributeValue ; + skos:definition "An attribute value representing a person" ; + skos:inScheme nmdc:core . + +nmdc:biomaterial_purity a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "biomaterial_purity" ; + rdfs:range nmdc:QuantityValue ; + skos:inScheme nmdc:basic_slots . + +nmdc:insdc_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "insdc_identifiers" ; + rdfs:seeAlso , + ; + skos:altLabel "DDBJ identifiers", + "EBI identifiers", + "NCBI identifiers" ; + skos:definition "Any identifier covered by the International Nucleotide Sequence Database Collaboration" ; + skos:inScheme nmdc:external_identifiers ; + skos:note "note that we deliberately abstract over which of the partner databases accepted the initial submission", + "the first letter of the accession indicates which partner accepted the initial submission: E for ENA, D for DDBJ, or S or N for NCBI." . + +nmdc:ArchStrucEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + . + +nmdc:ControlledIdentifiedTermValue a owl:Class, + linkml:ClassDefinition ; + rdfs:label "ControlledIdentifiedTermValue" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:term ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:term ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:term ], + nmdc:ControlledTermValue ; + skos:definition "A controlled term or class from an ontology, requiring the presence of term with an id" ; + skos:editorialNote "To be used for slots like env_broad_scale" ; + skos:inScheme nmdc:core . + +nmdc:DoorDirectEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + . + +nmdc:DoorTypeEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + . + +nmdc:FurnitureEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + . + +nmdc:GeneProduct a owl:Class, + linkml:ClassDefinition ; + rdfs:label "GeneProduct" ; + rdfs:subClassOf nmdc:NamedThing ; + skos:definition "A molecule encoded by a gene that has an evolved function" ; + skos:editorialNote "we may include a more general gene product class in future to allow for ncRNA annotation" ; + skos:exactMatch ; + skos:inScheme nmdc:core . + +nmdc:InstrumentModelEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + . + +nmdc:JgiContTypeEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + . + +nmdc:OxyStatSampEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + . + +nmdc:RelSampLocEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + . + +nmdc:RoomLocEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + . + +nmdc:SolventEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( CHEBI:17790 CHEBI:35255 ) ; + linkml:permissible_values CHEBI:17790, + CHEBI:35255, + . + +nmdc:Study a owl:Class, + linkml:ClassDefinition ; + rdfs:label "Study" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gold_study_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:funding_sources ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ecosystem_type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ImageValue ; + owl:onProperty nmdc:study_image ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:alternative_names ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:study_image ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:study_category ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:ecosystem_type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:websites ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:notes ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:jgi_portal_study_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:alternative_descriptions ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:emsl_project_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:alternative_descriptions ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gold_study_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:objective ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_credit_associations ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^gnps\\.task:[a-f0-9]+$" ] ) ] ; + owl:onProperty nmdc:gnps_task_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:neon_study_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ecosystem_category ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ecosystem_subtype ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:ecosystem ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:insdc_bioproject_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ecosystem_subtype ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:alternative_titles ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^emsl\\.project:[0-9]{5}$" ] ) ] ; + owl:onProperty nmdc:emsl_project_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^jgi.proposal:\\d+$" ] ) ] ; + owl:onProperty nmdc:jgi_portal_study_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ecosystem_category ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:ecosystem_subtype ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Study ; + owl:onProperty nmdc:part_of ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:alternative_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:neon_study_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:relevant_protocols ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:relevant_protocols ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:alternative_titles ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:specific_ecosystem ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:specific_ecosystem ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:title ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^gold:Gs[0-9]+$" ] ) ] ; + owl:onProperty nmdc:gold_study_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:funding_sources ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:associated_dois ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:ecosystem_category ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:description ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ecosystem ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:websites ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ecosystem_type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gnps_task_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:mgnify_project_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:part_of ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ecosystem ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:title ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:description ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:PersonValue ; + owl:onProperty nmdc:principal_investigator ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gnps_task_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:notes ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:specific_ecosystem ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:description ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Doi ; + owl:onProperty nmdc:associated_dois ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:notes ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:insdc_bioproject_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:objective ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:jgi_portal_study_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:principal_investigator ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:study_category ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:principal_investigator ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:CreditAssociation ; + owl:onProperty nmdc:has_credit_associations ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:StudyCategoryEnum ; + owl:onProperty nmdc:study_category ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:alternative_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:related_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:objective ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:mgnify_project_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:insdc_bioproject_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:alternative_names ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^mgnify.proj:[A-Z]+[0-9]+$" ] ) ] ; + owl:onProperty nmdc:mgnify_project_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:related_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:neon_study_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:related_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:emsl_project_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:title ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:name ], + nmdc:NamedThing ; + skos:altLabel "investigation", + "project", + "proposal", + "research initiative", + "research proposal", + "research study", + "umbrella project" ; + skos:broadMatch prov:Activity ; + skos:definition "A study summarizes the overall goal of a research initiative and outlines the key objective of its underlying projects." ; + skos:editorialNote "GOLD, insdc.srs and mgnify are reasonable prefixes for alternative study identifiers, but no longer for the Study.id", + "sample GOLD link https://bioregistry.io/gold:Gs0110115", + "sample insdc.srs link https://www.ebi.ac.uk/ena/browser/view/PRJEB45055 ?", + "sample mgnify link https://www.ebi.ac.uk/metagenomics/studies/MGYS00005757" ; + skos:exactMatch ISA:Investigation, + NCIT:C41198, + OBI:0000066, + ; + skos:inScheme nmdc:nmdc ; + skos:note "The Study class can include both consortia and research studies." . + +nmdc:SubstructureTypeEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + . + +nmdc:TrainLineEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + . + +nmdc:TrainStopLocEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + . + +nmdc:WindowCoverEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + . + +nmdc:WindowHorizPosEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + . + +nmdc:WindowTypeEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + . + +nmdc:YesNoEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + . + +nmdc:dna_cont_well a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "dna_cont_well" ; + dcterms:title "DNA plate position" ; + rdfs:range [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^(?!A1|A12|H1|H12)(([A-H][1-9])|([A-H]1[0-2]))$" ] ) ] ; + skos:inScheme ; + skos:note "For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).", + "JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass validation.", + "Leave blank if the sample will be shipped in a tube.", + "Required when 'plate' is selected for container type." ; + sh:order 11 . + +nmdc:external_database_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "external_database_identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:intersectionOf ( nmdc:external_identifier [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$" ] ) ] ) ] ; + rdfs:subPropertyOf nmdc:alternative_identifiers ; + skos:closeMatch skos:closeMatch ; + skos:definition "Link to corresponding identifier in external database" ; + skos:editorialNote "had tried ranges of external identifier and string" ; + skos:inScheme nmdc:external_identifiers ; + skos:note "The value of this field is always a registered CURIE" . + +nmdc:has_numeric_value a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has_numeric_value" ; + rdfs:range linkml:Float ; + skos:definition "Links a quantity value to a number" ; + skos:inScheme nmdc:core ; + skos:mappingRelation , + . + +nmdc:study_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "study_identifiers" ; + rdfs:subPropertyOf nmdc:external_database_identifiers ; + skos:inScheme nmdc:external_identifiers . + +nmdc:alternative_identifiers a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "alternative_identifiers" ; + rdfs:range [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Uriorcurie [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$" ] ) ] ) ] ; + skos:definition "A list of alternative identifiers for the entity." ; + skos:inScheme nmdc:basic_slots . + +nmdc:container_size a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "container_size" ; + dcterms:contributor ORCID:0000-0002-8683-0050, + ORCID:0009-0001-1555-1601 ; + rdfs:range nmdc:QuantityValue ; + skos:definition "The volume of the container an analyte is stored in or an activity takes place in" ; + skos:inScheme nmdc:nmdc . + +nmdc:ecosystem a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ecosystem" ; + rdfs:seeAlso ; + rdfs:subPropertyOf nmdc:gold_path_field ; + skos:definition "An ecosystem is a combination of a physical environment (abiotic factors) and all the organisms (biotic factors) that interact with this environment. Ecosystem is in position 1/5 in a GOLD path." ; + skos:inScheme nmdc:nmdc ; + skos:note "The abiotic factors play a profound role on the type and composition of organisms in a given environment. The GOLD Ecosystem at the top of the five-level classification system is aimed at capturing the broader environment from which an organism or environmental sample is collected. The three broad groups under Ecosystem are Environmental, Host-associated, and Engineered. They represent samples collected from a natural environment or from another organism or from engineered environments like bioreactors respectively." . + +nmdc:ecosystem_category a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ecosystem_category" ; + rdfs:seeAlso ; + rdfs:subPropertyOf nmdc:gold_path_field ; + skos:definition "Ecosystem categories represent divisions within the ecosystem based on specific characteristics of the environment from where an organism or sample is isolated. Ecosystem category is in position 2/5 in a GOLD path." ; + skos:inScheme nmdc:nmdc ; + skos:note "The Environmental ecosystem (for example) is divided into Air, Aquatic and Terrestrial. Ecosystem categories for Host-associated samples can be individual hosts or phyla and for engineered samples it may be manipulated environments like bioreactors, solid waste etc." . + +nmdc:ecosystem_subtype a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ecosystem_subtype" ; + rdfs:seeAlso ; + rdfs:subPropertyOf nmdc:gold_path_field ; + skos:definition "Ecosystem subtypes represent further subdivision of Ecosystem types into more distinct subtypes. Ecosystem subtype is in position 4/5 in a GOLD path." ; + skos:inScheme nmdc:nmdc ; + skos:note "Ecosystem Type Marine (Environmental -> Aquatic -> Marine) is further divided (for example) into Intertidal zone, Coastal, Pelagic, Intertidal zone etc. in the Ecosystem subtype category." . + +nmdc:ecosystem_type a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "ecosystem_type" ; + rdfs:seeAlso ; + rdfs:subPropertyOf nmdc:gold_path_field ; + skos:definition "Ecosystem types represent things having common characteristics within the Ecosystem Category. These common characteristics based grouping is still broad but specific to the characteristics of a given environment. Ecosystem type is in position 3/5 in a GOLD path." ; + skos:inScheme nmdc:nmdc ; + skos:note "The Aquatic ecosystem category (for example) may have ecosystem types like Marine or Thermal springs etc. Ecosystem category Air may have Indoor air or Outdoor air as different Ecosystem Types. In the case of Host-associated samples, ecosystem type can represent Respiratory system, Digestive system, Roots etc." . + +nmdc:material_output a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "material_output" ; + dcterms:title "material output" ; + rdfs:range nmdc:MaterialSample ; + skos:inScheme nmdc:sample_prep . + +nmdc:processing_institution a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "processing_institution" ; + rdfs:range nmdc:ProcessingInstitutionEnum ; + skos:definition "The organization that processed the sample." ; + skos:inScheme nmdc:nmdc . + +nmdc:specific_ecosystem a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "specific_ecosystem" ; + rdfs:seeAlso ; + rdfs:subPropertyOf nmdc:gold_path_field ; + skos:definition "Specific ecosystems represent specific features of the environment like aphotic zone in an ocean or gastric mucosa within a host digestive system. Specific ecosystem is in position 5/5 in a GOLD path." ; + skos:inScheme nmdc:nmdc ; + skos:note "Specific ecosystems help to define samples based on very specific characteristics of an environment under the five-level classification system." . + +nmdc:url a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "url" ; + rdfs:range linkml:String ; + rdfs:subPropertyOf nmdc:attribute ; + skos:editorialNote "See issue 207 - this clashes with the mixs field" ; + skos:inScheme nmdc:core . + +nmdc:used a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "used" ; + rdfs:domain nmdc:Activity ; + skos:inScheme nmdc:prov ; + skos:mappingRelation prov:used . + +nmdc:was_generated_by a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "was_generated_by" ; + rdfs:range nmdc:Activity ; + skos:inScheme nmdc:prov ; + skos:mappingRelation prov:wasGeneratedBy . + +nmdc:BuildingSettingEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:DoiCategoryEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:DoorCompTypeEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:DoorLocEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:ExtractionTargetEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:GrowthHabitEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:HandidnessEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:HeatDelivLocEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:HostSexEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:OccupDocumentEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:PlannedProcess a owl:Class, + linkml:ClassDefinition ; + rdfs:label "PlannedProcess" ; + dcterms:title "Planned Process" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:designated_class ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:end_date ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:end_date ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:NamedThing ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:designated_class ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:start_date ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:NamedThing ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:designated_class ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:start_date ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:protocol_link ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:protocol_link ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:end_date ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Protocol ; + owl:onProperty nmdc:protocol_link ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:start_date ], + nmdc:NamedThing ; + skos:exactMatch OBI:0000011 ; + skos:inScheme nmdc:core . + +nmdc:QuadPosEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:SampFloorEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:SampMdEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + , + . + +nmdc:SeasonUseEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:SedimentTypeEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:TidalStageEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:WallLocEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:WindowLocEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + +nmdc:part_of a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "part_of" ; + rdfs:domain nmdc:NamedThing ; + rdfs:range nmdc:NamedThing ; + skos:altLabel "is part of" ; + skos:definition "Links a resource to another resource that either logically or physically includes it." ; + skos:inScheme nmdc:core . + +nmdc:AttributeValue a owl:Class, + linkml:ClassDefinition ; + rdfs:label "AttributeValue" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:has_raw_value ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_raw_value ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:was_generated_by ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Activity ; + owl:onProperty nmdc:was_generated_by ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:was_generated_by ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:has_raw_value ] ; + skos:definition "The value for any value of a attribute for a sample. This object can hold both the un-normalized atomic value and the structured value" ; + skos:inScheme nmdc:core . + +nmdc:Biosample a owl:Class, + linkml:ClassDefinition ; + rdfs:label "Biosample" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom nmdc:OccupDocumentEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:WindowCoverEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:collection_time_inc ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:dna_cont_well ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:nitrate_nitrogen ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:SurfMaterialEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TimestampValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:tot_org_carb ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:FloorStrucEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ControlledTermValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^img\\.taxon:[a-zA-Z0-9_][a-zA-Z0-9_\\/\\.]*$" ] ) ] ; + owl:onProperty nmdc:img_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:dna_sample_format ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:String [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^(cat|dog|rodent|snake|other);\\d+$" ] ) ] ) ] ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:emsl_biosample_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TimestampValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:manganese ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^(?!A1|A12|H1|H12)(([A-H][1-9])|([A-H]1[0-2]))$" ] ) ] ; + owl:onProperty nmdc:dna_cont_well ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:PlantSexEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ecosystem_category ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:dna_absorb1 ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:proposal_rna ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:specific_ecosystem ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:rna_container_id ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:tot_nitro_cont_meth ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:water_cont_soil_meth ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:sample_collection_site ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:GrowthHabitEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty nmdc:subsurface_depth ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ncbi_taxonomy_name ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:oxy_stat_samp ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:rna_organisms ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:collection_date_inc ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:proposal_dna ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ecosystem ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:dna_isolate_meth ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:zinc ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:SpecificEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:DoorLocEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:rna_sample_name ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:dna_sample_format ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:dna_collect_site ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ammonium_nitrogen ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^(?!A1|A12|H1|H12)(([A-H][1-9])|([A-H]1[0-2]))$" ] ) ] ; + owl:onProperty nmdc:dna_cont_well ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:collection_time ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:non_microb_biomass_method ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ecosystem_category ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:intersectionOf ( [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:maxInclusive 2000 ] ) ] ) ] ; + owl:onProperty nmdc:rna_sample_name ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:tot_nitro_cont_meth ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:rna_cont_well ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:zinc ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:bulk_elect_conductivity ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty nmdc:env_package ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:rna_volume ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:non_microb_biomass_method ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:host_name ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:dna_collect_site ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gold_biosample_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:dna_cont_well ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:org_nitro_method ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:gaseous_environment ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:LightTypeEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:community ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ControlledTermValue ; + owl:onProperty ], + [ a owl:Restriction ; 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+ owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ExtWallOrientEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:embargoed ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:igsn_biosample_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TimestampValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ecosystem ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:YesNoEnum ; + owl:onProperty nmdc:dnase_rna ], + [ a owl:Restriction ; 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+ owl:allValuesFrom nmdc:ControlledTermValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:WallLocEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:dna_container_id ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:watering_regm ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:BioticRelationshipEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:rna_seq_project_pi ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:gaseous_environment ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:experimental_factor_other ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:season_precpt ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:JgiContTypeEnum ; + owl:onProperty nmdc:dna_cont_type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:flooding ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty nmdc:lbc_thirty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:salinity_meth ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:neon_biosample_identifiers ], + [ a owl:Restriction ; 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+ owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:CeilTypeEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:nitrite_nitrogen ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:extreme_event ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:tot_org_c_meth ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Double ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ControlledTermValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:flooding ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:igsn_biosample_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:slope_gradient ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:SubstructureTypeEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:salinity_meth ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:LithologyEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:subsurface_depth ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:manganese ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:tot_nitro_content ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:soluble_iron_micromol ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TimestampValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:HcrEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:CeilTextureEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:climate_environment ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:dna_dnase ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:sample_type ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:neon_biosample_identifiers ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:rna_absorb2 ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:soluble_iron_micromol ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:BiosampleCategoryEnum ; + owl:onProperty nmdc:biosample_categories ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], + owl:onProperty nmdc:ecosystem_category ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:micro_biomass_c_meth ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:HostSexEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], + owl:onProperty ], [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ] ; - skos:definition "Something that occurs over a period of time and acts upon or with entities; it may include consuming, processing, transforming, modifying, relocating, using, or generating entities." ; - skos:editorialNote "removed was_associated_with because we are trying to avoid instantiating id-less Agents" ; - skos:inScheme nmdc:prov ; - skos:mappingRelation prov:Activity ; - skos:note "to be replaced with PlannedProcess in the monterey-schema" . - -nmdc:ArchStrucEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - . - -nmdc:Doi a owl:Class, - linkml:ClassDefinition ; - rdfs:label "Doi" ; - skos:altLabel "DOIs", - "digital object identifiers" ; - skos:definition "A centrally registered identifier symbol used to uniquely identify objects given by the International DOI Foundation. The DOI system is particularly used for electronic documents." ; - skos:exactMatch OBI:0002110 ; - skos:inScheme nmdc:nmdc . - -nmdc:DoorDirectEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - . - -nmdc:DoorTypeEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - . - -nmdc:FurnitureEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - . - -nmdc:GeneProduct a owl:Class, - linkml:ClassDefinition ; - rdfs:label "GeneProduct" ; - rdfs:subClassOf nmdc:NamedThing ; - skos:definition "A molecule encoded by a gene that has an evolved function" ; - skos:editorialNote "we may include a more general gene product class in future to allow for ncRNA annotation" ; - skos:exactMatch ; - skos:inScheme nmdc:core . - -nmdc:InstrumentModelEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - . - -nmdc:JgiContTypeEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - . - -nmdc:MaterialEntity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "MaterialEntity" ; - dcterms:title "Material Entity" ; - rdfs:subClassOf nmdc:NamedThing ; - skos:altLabel "Material", - "Physical entity" ; - skos:inScheme nmdc:core . - -nmdc:PersonValue a owl:Class, - linkml:ClassDefinition ; - rdfs:label "PersonValue" ; - rdfs:subClassOf [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:has_raw_value ], + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:env_medium ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:rna_concentration ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:RelSampLocEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:RoomSampPosEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty nmdc:zinc ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:subsurface_depth ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:ecosystem_type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:add_date ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:VisMediaEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:DoorMoveEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Integer ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:dna_isolate_meth ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:env_local_scale ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Float ; + owl:onProperty nmdc:rna_absorb1 ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:env_medium ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:neon_biosample_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:fire ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TrainStatLocEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:extreme_event ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:email ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:name ], + owl:maxCardinality 1 ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:email ], + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:name ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:orcid ], + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Double ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:orcid ], + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:SampFloorEnum ; + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:has_raw_value ], + owl:onProperty nmdc:dna_sample_name ], [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:email ], + owl:minCardinality 0 ; + owl:onProperty nmdc:flooding ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:has_raw_value ], + owl:onProperty nmdc:specific_ecosystem ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:name ], + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:HcrGeolAgeEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:WindowLocEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ControlledTermValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:orcid ], - nmdc:AttributeValue ; - skos:definition "An attribute value representing a person" ; - skos:inScheme nmdc:core . - -nmdc:RelSampLocEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - . - -nmdc:RoomLocEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - . - -nmdc:SolventEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( CHEBI:17790 CHEBI:35255 ) ; - linkml:permissible_values CHEBI:17790, - CHEBI:35255, - . - -nmdc:SubstructureTypeEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - . - -nmdc:TrainLineEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - . - -nmdc:TrainStopLocEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - . - -nmdc:WindowCoverEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - . - -nmdc:WindowHorizPosEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - . - -nmdc:WindowTypeEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - . - -nmdc:YesNoEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - . - -nmdc:biomaterial_purity a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "biomaterial_purity" ; - rdfs:range nmdc:QuantityValue ; - skos:inScheme nmdc:basic_slots . - -nmdc:gold_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gold_identifiers" ; - rdfs:seeAlso ; - skos:inScheme nmdc:external_identifiers . - -nmdc:instrument_used a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "instrument_used" ; - rdfs:range nmdc:AnonymousInstrument ; - skos:definition "The device or tool that performed or aided in performing a process." ; - skos:inScheme nmdc:basic_slots ; - skos:note "not to be confused with 'used' which currently has a string range" . - -nmdc:read_qc_analysis_statistic a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "read_qc_analysis_statistic" ; - skos:inScheme nmdc:workflow_execution_activity . - -nmdc:BioticRelationshipEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:BuildingSettingEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:ControlledIdentifiedTermValue a owl:Class, - linkml:ClassDefinition ; - rdfs:label "ControlledIdentifiedTermValue" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:term ], + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:manganese ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:term ], + owl:onProperty nmdc:al_sat ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:dna_isolate_meth ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:elev ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:term ], - nmdc:ControlledTermValue ; - skos:definition "A controlled term or class from an ontology, requiring the presence of term with an id" ; - skos:editorialNote "To be used for slots like env_broad_scale" ; - skos:inScheme nmdc:core . - -nmdc:DoiCategoryEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:DoorCompTypeEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:DoorLocEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:ExtractionTargetEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:GrowthHabitEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:HandidnessEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:HeatDelivLocEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:HostSexEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:OccupDocumentEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:OxyStatSampEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - . - -nmdc:ProcessedSample a owl:Class, - linkml:ClassDefinition ; - rdfs:label "ProcessedSample" ; - dcterms:title "Processed Sample" ; - rdfs:subClassOf [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:collection_date_inc ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], + owl:onProperty nmdc:salinity_category ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - nmdc:MaterialEntity ; - skos:inScheme nmdc:core . - -nmdc:QuadPosEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:SampFloorEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:SampMdEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - , - . - -nmdc:SeasonUseEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:SedimentTypeEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:TidalStageEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:WallLocEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:WindowLocEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - . - -nmdc:alternative_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "alternative_identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:intersectionOf ( linkml:Uriorcurie [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$" ] ) ] ) ] ; - skos:definition "A list of alternative identifiers for the entity." ; - skos:inScheme nmdc:basic_slots . - -nmdc:gold_path_field a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "gold_path_field" ; - rdfs:range linkml:String ; - rdfs:subPropertyOf nmdc:attribute ; - skos:definition "This is a grouping for any of the gold path fields" ; - skos:inScheme nmdc:nmdc . - -nmdc:has_numeric_value a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "has_numeric_value" ; - rdfs:range linkml:Float ; - skos:definition "Links a quantity value to a number" ; - skos:inScheme nmdc:core ; - skos:mappingRelation , - . - -nmdc:AnalysisTypeEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - , - . - -nmdc:Biosample a owl:Class, - linkml:ClassDefinition ; - rdfs:label "Biosample" ; - rdfs:subClassOf [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:slope_gradient ], + owl:onProperty nmdc:microbial_biomass_c ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:ammonium_nitrogen ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:lat_lon ], + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:dna_project_contact ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:rna_seq_project ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:habitat ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:DoorTypeWoodEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TidalStageEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:micro_biomass_n_meth ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:start_date_inc ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:proposal_dna ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:gold_biosample_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:specific_ecosystem ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ControlledTermValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty nmdc:climate_environment ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:oxy_stat_samp ], + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Float [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:minInclusive 0 ] ) ] [ a rdfs:Datatype ; + owl:onDatatype xsd:integer ; + owl:withRestrictions ( [ xsd:maxInclusive 1000 ] ) ] ) ] ; + owl:onProperty nmdc:rna_concentration ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:WaterFeatTypeEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:dna_seq_project ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:habitat ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:rna_samp_id ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:other_treatment ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:alternative_identifiers ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:part_of ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; owl:onProperty nmdc:ph_meth ], [ a owl:Restriction ; - owl:allValuesFrom linkml:Float ; - owl:onProperty nmdc:elev ], + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty nmdc:nitrate_nitrogen ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:zinc ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:gaseous_environment ], + owl:maxCardinality 1 ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:tot_org_c_meth ], + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:env_medium ], + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:elev ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:tot_carb ], + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:slope_gradient ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:tot_nitro_content ], + owl:minCardinality 0 ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:lat_lon ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:tot_nitro_cont_meth ], + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:al_sat ], + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:cur_vegetation_meth ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:annual_precpt ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:part_of ], + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:sieving ], + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:water_cont_soil_meth ], + owl:onProperty nmdc:ecosystem ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:sieving ], + owl:onProperty ], [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:flooding ], + owl:minCardinality 0 ; + owl:onProperty nmdc:rna_sample_name ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:ph_meth ], + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:flooding ], + owl:onProperty nmdc:type ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:gold_biosample_identifiers ], + owl:onProperty nmdc:ecosystem_type ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:cur_vegetation ], + owl:onProperty ], [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:salinity_meth ], + owl:allValuesFrom nmdc:ShadingDeviceCondEnum ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:tot_org_c_meth ], + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:slope_aspect ], + owl:onProperty ], [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:fire ], + owl:allValuesFrom nmdc:DrawingsEnum ; + owl:onProperty ], [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:heavy_metals ], + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:rna_project_contact ], [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:heavy_metals_meth ], + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:env_broad_scale ], [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:slope_aspect ], + owl:allValuesFrom nmdc:RoomTypeEnum ; + owl:onProperty ], [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:env_local_scale ], + owl:minCardinality 0 ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:OxyStatSampEnum ; - owl:onProperty nmdc:oxy_stat_samp ], + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty nmdc:lbceq ], [ a owl:Restriction ; - owl:allValuesFrom [ a rdfs:Datatype ; - owl:intersectionOf ( linkml:String [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^[12]\\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\\d|3[01]))?)?(\\s+to\\s+[12]\\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\\d|3[01]))?)?)?$" ] ) ] ) ] ; - owl:onProperty nmdc:fire ], + owl:maxCardinality 1 ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:tot_org_carb ], + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:tot_carb ], + owl:onProperty ], [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:env_broad_scale ], + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:sample_link ], [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:source_mat_id ], + owl:maxCardinality 1 ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:env_local_scale ], + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:ph_meth ], + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:heavy_metals_meth ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:extreme_event ], + owl:minCardinality 0 ; + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:elev ], + owl:onProperty nmdc:project_id ], [ a owl:Restriction ; - owl:maxCardinality 1 ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; owl:onProperty nmdc:water_cont_soil_meth ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:tot_nitro_cont_meth ], + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:season_precpt ], + owl:onProperty nmdc:other_treatment ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuadPosEnum ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:tot_nitro_content ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:al_sat_meth ], + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:flooding ], + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:gold_biosample_identifiers ], + owl:onProperty ], [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:extreme_event ], + owl:maxCardinality 1 ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:sieving ], + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:tot_nitro_cont_meth ], + owl:onProperty nmdc:tot_nitro_content ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:alternative_identifiers ], + owl:maxCardinality 1 ; + owl:onProperty nmdc:rna_project_contact ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:annual_precpt ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:heavy_metals ], + owl:onProperty ], [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:env_medium ], + owl:maxCardinality 1 ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:watering_regm ], + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:cur_vegetation ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:source_mat_id ], + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:alternative_identifiers ], + owl:allValuesFrom nmdc:BuildingSettingEnum ; + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], + owl:onProperty nmdc:dna_organisms ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:al_sat_meth ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom [ owl:intersectionOf ( nmdc:Study [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^nmdc:sty-[0-9][a-z]{0,6}[0-9]-[A-Za-z0-9]{1,}(\\.[A-Za-z0-9]{1,})*(_[A-Za-z0-9_\\.-]+)?$" ] ) ] ) ] ; - owl:onProperty nmdc:part_of ], + owl:minCardinality 0 ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:cur_vegetation_meth ], + owl:minCardinality 0 ; + owl:onProperty ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:cur_vegetation_meth ], + owl:onProperty nmdc:non_microb_biomass ], [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:water_cont_soil_meth ], + owl:allValuesFrom nmdc:MechStrucEnum ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:al_sat ], + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:gaseous_environment ], + owl:onProperty nmdc:dna_cont_type ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:water_content ], + owl:minCardinality 0 ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:slope_aspect ], + owl:minCardinality 0 ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:env_medium ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:tot_org_c_meth ], + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:source_mat_id ], + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:env_local_scale ], + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:rna_samp_id ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:watering_regm ], + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:extreme_event ], + owl:onProperty nmdc:filter_method ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:season_precpt ], + owl:onProperty nmdc:id ], [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:tot_nitro_content ], + owl:allValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^biosample:SAM[NED]([A-Z])?[0-9]+$" ] ) ] ; + owl:onProperty nmdc:insdc_biosample_identifiers ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:al_sat_meth ], + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:tot_org_carb ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:salinity_meth ], + owl:minCardinality 0 ; + owl:onProperty ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:lat_lon ], + owl:onProperty ], [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:annual_precpt ], + owl:minCardinality 0 ; + owl:onProperty nmdc:source_mat_id ], [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:env_broad_scale ], + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:Uriorcurie ; - owl:onProperty nmdc:gold_biosample_identifiers ], + owl:minCardinality 0 ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:fire ], + owl:onProperty ], [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], + owl:allValuesFrom nmdc:OxyStatSampEnum ; + owl:onProperty nmdc:oxy_stat_samp ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:slope_gradient ], + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:season_precpt ], - [ a owl:Restriction ; - owl:minCardinality 1 ; owl:onProperty nmdc:id ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:oxy_stat_samp ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:cur_vegetation ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:climate_environment ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:tot_carb ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:water_content ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:al_sat ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:salinity_meth ], + owl:maxCardinality 1 ; + owl:onProperty ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:tot_org_carb ], + owl:onProperty nmdc:ecosystem_subtype ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:env_broad_scale ], + owl:minCardinality 0 ; + owl:onProperty ], nmdc:MaterialEntity ; + owl:hasKey ( ) ; skos:altLabel "biospecimen", "material sample", "sample", @@ -14631,6 +23481,33 @@ nmdc:Biosample a owl:Class, OBI:0000747 ; skos:inScheme nmdc:nmdc . +nmdc:BioticRelationshipEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "nucleic acid sequence source field" ; + skos:inScheme . + + a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "sequencing field" ; + skos:inScheme . + +nmdc:AnalysisTypeEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + , + . + nmdc:BiosampleCategoryEnum a owl:Class, linkml:EnumDefinition ; owl:unionOf ( ) ; @@ -14716,29 +23593,11 @@ nmdc:IntWallCondEnum a owl:Class, nmdc:LightTypeEnum a owl:Class, linkml:EnumDefinition ; owl:unionOf ( ) ; - linkml:permissible_values , - , - , - , - . - -nmdc:OntologyClass a owl:Class, - linkml:ClassDefinition ; - rdfs:label "OntologyClass" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$" ] ) ] ; - owl:onProperty nmdc:id ], - nmdc:NamedThing ; - skos:editorialNote "The identifiers for terms from external ontologies can't have their ids constrained to the nmdc namespace" ; - skos:inScheme nmdc:core . + linkml:permissible_values , + , + , + , + . nmdc:ProfilePositionEnum a owl:Class, linkml:EnumDefinition ; @@ -14848,12 +23707,6 @@ nmdc:WindowVertPosEnum a owl:Class, , . -nmdc:biosample_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "biosample_identifiers" ; - rdfs:subPropertyOf nmdc:external_database_identifiers ; - skos:inScheme nmdc:external_identifiers . - nmdc:description a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "description" ; @@ -14861,51 +23714,19 @@ nmdc:description a owl:ObjectProperty, skos:definition "a human-readable description of a thing" ; skos:inScheme nmdc:basic_slots . -nmdc:external_database_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "external_database_identifiers" ; - rdfs:range [ a rdfs:Datatype ; - owl:intersectionOf ( nmdc:external_identifier [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$" ] ) ] ) ] ; - rdfs:subPropertyOf nmdc:alternative_identifiers ; - skos:closeMatch skos:closeMatch ; - skos:definition "Link to corresponding identifier in external database" ; - skos:editorialNote "had tried ranges of external identifier and string" ; - skos:inScheme nmdc:external_identifiers ; - skos:note "The value of this field is always a registered CURIE" . - -nmdc:material_output a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "material_output" ; - dcterms:title "material output" ; - rdfs:range nmdc:MaterialSample ; - skos:inScheme nmdc:sample_prep . - -nmdc:part_of a owl:ObjectProperty, +nmdc:has_raw_value a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "part_of" ; - rdfs:domain nmdc:NamedThing ; - rdfs:range nmdc:NamedThing ; - skos:altLabel "is part of" ; - skos:definition "Links a resource to another resource that either logically or physically includes it." ; + rdfs:label "has_raw_value" ; + rdfs:domain nmdc:AttributeValue ; + rdfs:range linkml:String ; + skos:definition "The value that was specified for an annotation in raw form, i.e. a string. E.g. \"2 cm\" or \"2-4 cm\"" ; skos:inScheme nmdc:core . -nmdc:used a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "used" ; - rdfs:domain nmdc:Activity ; - skos:inScheme nmdc:prov ; - skos:mappingRelation prov:used . - -nmdc:volume a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "volume" ; - dcterms:contributor ORCID:0000-0002-8683-0050, - ORCID:0009-0001-1555-1601 ; - rdfs:range nmdc:QuantityValue ; - skos:definition "The volume of a substance." ; - skos:inScheme nmdc:nmdc . + rdfs:label "environment field" ; + skos:definition "field describing environmental aspect of a sample" ; + skos:inScheme . nmdc:DeviceEnum a owl:Class, linkml:EnumDefinition ; @@ -14917,6 +23738,24 @@ nmdc:DeviceEnum a owl:Class, , . +nmdc:TimestampValue a owl:Class, + linkml:ClassDefinition ; + rdfs:label "TimestampValue" ; + rdfs:subClassOf nmdc:AttributeValue ; + skos:definition "A value that is a timestamp. The range should be ISO-8601" ; + skos:editorialNote "removed the following slots: year, month, day" ; + skos:inScheme nmdc:core . + +nmdc:designated_class a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "designated_class" ; + rdfs:range linkml:Uriorcurie ; + rdfs:seeAlso , + ; + skos:inScheme nmdc:nmdc ; + skos:note "MAM prefers to use this functionality in a `type` class and to eliminate '...type...' from the names of any NMDC-owned elements", + "this would be required on all instances in a polymorphic Database slot, like planned_process_set" . + nmdc:DoorMoveEnum a owl:Class, linkml:EnumDefinition ; owl:unionOf ( ) ; @@ -14948,183 +23787,54 @@ nmdc:FilterTypeEnum a owl:Class, . nmdc:GenderRestroomEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - , - , - . - -nmdc:HcProducedEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - , - , - . - -nmdc:PlannedProcess a owl:Class, - linkml:ClassDefinition ; - rdfs:label "PlannedProcess" ; - dcterms:title "Planned Process" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:designated_class ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:designated_class ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:designated_class ], - nmdc:NamedThing ; - skos:exactMatch OBI:0000011 ; - skos:inScheme nmdc:core . - -nmdc:ProcessingInstitutionEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - , - , - . - -nmdc:RoomCondtEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - , - , - . - -nmdc:SampDisStageEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - , - , - . - -nmdc:SpecificEnum a owl:Class, - linkml:EnumDefinition ; - owl:unionOf ( ) ; - linkml:permissible_values , - , - , - , - , - . - -nmdc:Study a owl:Class, - linkml:ClassDefinition ; - rdfs:label "Study" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:notes ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:Study ; - owl:onProperty nmdc:part_of ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:insdc_bioproject_identifiers ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:insdc_bioproject_identifiers ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:part_of ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:related_identifiers ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:alternative_identifiers ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:description ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:alternative_identifiers ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:description ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:insdc_bioproject_identifiers ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:name ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:related_identifiers ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:alternative_names ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:related_identifiers ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:websites ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:name ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:alternative_names ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:name ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:websites ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:description ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:notes ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:notes ], - nmdc:NamedThing ; - skos:altLabel "investigation", - "project", - "proposal", - "research initiative", - "research proposal", - "research study", - "umbrella project" ; - skos:broadMatch prov:Activity ; - skos:definition "A study summarizes the overall goal of a research initiative and outlines the key objective of its underlying projects." ; - skos:editorialNote "GOLD, insdc.srs and mgnify are reasonable prefixes for alternative study identifiers, but no longer for the Study.id", - "sample GOLD link https://bioregistry.io/gold:Gs0110115", - "sample insdc.srs link https://www.ebi.ac.uk/ena/browser/view/PRJEB45055 ?", - "sample mgnify link https://www.ebi.ac.uk/metagenomics/studies/MGYS00005757" ; - skos:exactMatch ISA:Investigation, - NCIT:C41198, - OBI:0000066, - ; - skos:inScheme nmdc:nmdc ; - skos:note "The Study class can include both consortia and research studies." . + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + , + , + . + +nmdc:HcProducedEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + , + , + . + +nmdc:RoomCondtEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + , + , + . + +nmdc:SampDisStageEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + , + , + . + +nmdc:SpecificEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + , + , + . nmdc:WallConstTypeEnum a owl:Class, linkml:EnumDefinition ; @@ -15146,19 +23856,6 @@ nmdc:WallSurfTreatmentEnum a owl:Class, , . -nmdc:insdc_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "insdc_identifiers" ; - rdfs:seeAlso , - ; - skos:altLabel "DDBJ identifiers", - "EBI identifiers", - "NCBI identifiers" ; - skos:definition "Any identifier covered by the International Nucleotide Sequence Database Collaboration" ; - skos:inScheme nmdc:external_identifiers ; - skos:note "note that we deliberately abstract over which of the partner databases accepted the initial submission", - "the first letter of the accession indicates which partner accepted the initial submission: E for ENA, D for DDBJ, or S or N for NCBI." . - nmdc:CeilTypeEnum a owl:Class, linkml:EnumDefinition ; owl:unionOf ( ) ; @@ -15181,6 +23878,16 @@ nmdc:FloorStrucEnum a owl:Class, , . +nmdc:ProcessingInstitutionEnum a owl:Class, + linkml:EnumDefinition ; + owl:unionOf ( ) ; + linkml:permissible_values , + , + , + , + , + . + nmdc:SampCollectPointEnum a owl:Class, linkml:EnumDefinition ; owl:unionOf ( ) ; @@ -15192,14 +23899,6 @@ nmdc:SampCollectPointEnum a owl:Class, , . -nmdc:TimestampValue a owl:Class, - linkml:ClassDefinition ; - rdfs:label "TimestampValue" ; - rdfs:subClassOf nmdc:AttributeValue ; - skos:definition "A value that is a timestamp. The range should be ISO-8601" ; - skos:editorialNote "removed the following slots: year, month, day" ; - skos:inScheme nmdc:core . - nmdc:VisMediaEnum a owl:Class, linkml:EnumDefinition ; owl:unionOf ( ) ; @@ -15222,21 +23921,106 @@ nmdc:WeekdayEnum a owl:Class, , . -nmdc:study_identifiers a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "study_identifiers" ; - rdfs:subPropertyOf nmdc:external_database_identifiers ; - skos:inScheme nmdc:external_identifiers . - - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "nucleic acid sequence source field" ; - skos:inScheme . +nmdc:WorkflowExecutionActivity a owl:Class, + linkml:ClassDefinition ; + rdfs:label "WorkflowExecutionActivity" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:started_at_time ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:version ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:git_url ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:execution_resource ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:version ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:execution_resource ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:part_of ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:ended_at_time ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:execution_resource ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:git_url ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:git_url ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:ended_at_time ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:NamedThing ; + owl:onProperty nmdc:part_of ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:ended_at_time ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:started_at_time ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:version ], + [ a owl:Restriction ; + owl:allValuesFrom owl:Thing ; + owl:onProperty nmdc:has_output ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:started_at_time ], + nmdc:Activity ; + skos:altLabel "analysis" ; + skos:definition "Represents an instance of an execution of a particular workflow" ; + skos:inScheme nmdc:workflow_execution_activity ; + skos:note "Each instance of this (and all other) activities is a distinct run with start and stop times, potentially with different inputs and outputs" . - a owl:ObjectProperty, +nmdc:attribute a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "sequencing field" ; - skos:inScheme . + rdfs:label "attribute" ; + skos:altLabel "characteristic", + "field", + "key", + "property", + "template field" ; + skos:definition "A attribute of a biosample. Examples: depth, habitat, material. For NMDC, attributes SHOULD be mapped to terms within a MIxS template" ; + skos:inScheme nmdc:core . nmdc:BiolStatEnum a owl:Class, linkml:EnumDefinition ; @@ -15359,20 +24143,15 @@ nmdc:SurfAirContEnum a owl:Class, , . -nmdc:has_raw_value a owl:ObjectProperty, +nmdc:has_output a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "has_raw_value" ; - rdfs:domain nmdc:AttributeValue ; - rdfs:range linkml:String ; - skos:definition "The value that was specified for an annotation in raw form, i.e. a string. E.g. \"2 cm\" or \"2-4 cm\"" ; + rdfs:label "has_output" ; + rdfs:domain nmdc:NamedThing ; + rdfs:range nmdc:NamedThing ; + skos:altLabel "output" ; + skos:definition "An output biosample to a processing step" ; skos:inScheme nmdc:core . - a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "environment field" ; - skos:definition "field describing environmental aspect of a sample" ; - skos:inScheme . - nmdc:DoiProviderEnum a owl:Class, linkml:EnumDefinition ; owl:unionOf ( ) ; @@ -15412,6 +24191,51 @@ nmdc:MechStrucEnum a owl:Class, , . +nmdc:NamedThing a owl:Class, + linkml:ClassDefinition ; + rdfs:label "NamedThing" ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:description ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:minCardinality 1 ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:description ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:alternative_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:description ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Uriorcurie [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$" ] ) ] ) ] ; + owl:onProperty nmdc:id ], + [ a owl:Restriction ; + owl:allValuesFrom [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Uriorcurie [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$" ] ) ] ) ] ; + owl:onProperty nmdc:alternative_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:name ] ; + skos:definition "a databased entity or concept/class" ; + skos:inScheme nmdc:core . + nmdc:RoomSampPosEnum a owl:Class, linkml:EnumDefinition ; owl:unionOf ( ) ; @@ -15451,19 +24275,13 @@ nmdc:TillageEnum a owl:Class, , . -nmdc:AttributeValue a owl:Class, - linkml:ClassDefinition ; - rdfs:label "AttributeValue" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 0 ; - owl:onProperty nmdc:type ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:type ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:type ] ; - skos:definition "The value for any value of a attribute for a sample. This object can hold both the un-normalized atomic value and the structured value" ; +nmdc:has_input a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "has_input" ; + rdfs:domain nmdc:NamedThing ; + rdfs:range nmdc:NamedThing ; + skos:altLabel "input" ; + skos:definition "An input to a process." ; skos:inScheme nmdc:core . nmdc:CeilFinishMatEnum a owl:Class, @@ -15511,7 +24329,16 @@ nmdc:DoorTypeWoodEnum a owl:Class, nmdc:ControlledTermValue a owl:Class, linkml:ClassDefinition ; rdfs:label "ControlledTermValue" ; - rdfs:subClassOf nmdc:AttributeValue ; + rdfs:subClassOf [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:term ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:term ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:OntologyClass ; + owl:onProperty nmdc:term ], + nmdc:AttributeValue ; skos:definition "A controlled term or class from an ontology" ; skos:inScheme nmdc:core . @@ -15552,13 +24379,12 @@ nmdc:name a owl:ObjectProperty, skos:definition "A human readable label for an entity" ; skos:inScheme nmdc:basic_slots . -nmdc:type a owl:ObjectProperty, +nmdc:object_set a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "type" ; - rdfs:range linkml:String ; - rdfs:seeAlso ; - skos:definition "An optional string that specifies the type object. This is used to allow for searches for different kinds of objects." ; - skos:inScheme nmdc:basic_slots . + rdfs:label "object_set" ; + rdfs:domain nmdc:Database ; + skos:definition "Applies to a property that links a database object to a set of objects. This is necessary in a json document to provide context for a list, and to allow for a single json object that combines multiple object types" ; + skos:inScheme nmdc:nmdc . nmdc:DnaSampleFormatEnum a owl:Class, linkml:EnumDefinition ; @@ -15608,6 +24434,11 @@ nmdc:ShadingDeviceTypeEnum a owl:Class, , . +nmdc:metagenome_assembly_parameter a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "metagenome_assembly_parameter" ; + skos:inScheme nmdc:workflow_execution_activity . + nmdc:BuildDocsEnum a owl:Class, linkml:EnumDefinition ; owl:unionOf ( ) ; @@ -15676,81 +24507,6 @@ nmdc:LithologyEnum a owl:Class, , . -nmdc:WorkflowExecutionActivity a owl:Class, - linkml:ClassDefinition ; - rdfs:label "WorkflowExecutionActivity" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:git_url ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:type ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:type ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:ended_at_time ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:execution_resource ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:type ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:ended_at_time ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:started_at_time ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:has_output ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:execution_resource ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:has_output ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:git_url ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:started_at_time ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:execution_resource ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:has_input ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:has_input ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:ended_at_time ], - [ a owl:Restriction ; - owl:minCardinality 1 ; - owl:onProperty nmdc:started_at_time ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty nmdc:git_url ], - nmdc:Activity ; - skos:altLabel "analysis" ; - skos:definition "Represents an instance of an execution of a particular workflow" ; - skos:inScheme nmdc:workflow_execution_activity ; - skos:note "Each instance of this (and all other) activities is a distinct run with start and stop times, potentially with different inputs and outputs" . - nmdc:WallTextureEnum a owl:Class, linkml:EnumDefinition ; owl:unionOf ( ) ; @@ -15769,12 +24525,6 @@ nmdc:WallTextureEnum a owl:Class, , . -nmdc:NamedThing a owl:Class, - linkml:ClassDefinition ; - rdfs:label "NamedThing" ; - skos:definition "a databased entity or concept/class" ; - skos:inScheme nmdc:core . - nmdc:SurfMaterialEnum a owl:Class, linkml:EnumDefinition ; owl:unionOf ( ) ; @@ -15794,26 +24544,6 @@ nmdc:SurfMaterialEnum a owl:Class, , . -nmdc:attribute a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "attribute" ; - skos:altLabel "characteristic", - "field", - "key", - "property", - "template field" ; - skos:definition "A attribute of a biosample. Examples: depth, habitat, material. For NMDC, attributes SHOULD be mapped to terms within a MIxS template" ; - skos:inScheme nmdc:core . - -nmdc:has_output a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "has_output" ; - rdfs:domain nmdc:NamedThing ; - rdfs:range nmdc:NamedThing ; - skos:altLabel "output" ; - skos:definition "An output biosample to a processing step" ; - skos:inScheme nmdc:core . - nmdc:CreditEnum a owl:Class, linkml:EnumDefinition ; owl:unionOf ( OBI:0000103 EFO:0001741 ) ; @@ -15854,15 +24584,6 @@ nmdc:DeposEnvEnum a owl:Class, , . -nmdc:has_input a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "has_input" ; - rdfs:domain nmdc:NamedThing ; - rdfs:range nmdc:NamedThing ; - skos:altLabel "input" ; - skos:definition "An input to a process." ; - skos:inScheme nmdc:core . - nmdc:FloorFinishMatEnum a owl:Class, linkml:EnumDefinition ; owl:unionOf ( ) ; @@ -15929,13 +24650,6 @@ nmdc:SrGeolAgeEnum a owl:Class, , . -nmdc:object_set a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "object_set" ; - rdfs:domain nmdc:Database ; - skos:definition "Applies to a property that links a database object to a set of objects. This is necessary in a json document to provide context for a list, and to allow for a single json object that combines multiple object types" ; - skos:inScheme nmdc:nmdc . - nmdc:RoomTypeEnum a owl:Class, linkml:EnumDefinition ; owl:unionOf ( ) ; @@ -15995,10 +24709,13 @@ nmdc:FaoClassEnum a owl:Class, , . -nmdc:metagenome_assembly_parameter a owl:ObjectProperty, +nmdc:type a owl:ObjectProperty, linkml:SlotDefinition ; - rdfs:label "metagenome_assembly_parameter" ; - skos:inScheme nmdc:workflow_execution_activity . + rdfs:label "type" ; + rdfs:range linkml:String ; + rdfs:seeAlso ; + skos:definition "An optional string that specifies the type object. This is used to allow for searches for different kinds of objects." ; + skos:inScheme nmdc:basic_slots . nmdc:PlantSexEnum a owl:Class, linkml:EnumDefinition ; @@ -16072,6 +24789,36 @@ nmdc:CurLandUseEnum a owl:Class, , . +nmdc:id a owl:ObjectProperty, + linkml:SlotDefinition ; + rdfs:label "id" ; + rdfs:range [ a rdfs:Datatype ; + owl:intersectionOf ( linkml:Uriorcurie [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$" ] ) ] ) ] ; + skos:definition "A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI" ; + skos:editorialNote "a minimum length of 3 characters is suggested for typecodes, but 1 or 2 characters will be accepted", + "abstracted pattern: prefix:typecode-authshoulder-blade(.version)?(_seqsuffix)?", + "minting authority shoulders should probably be enumerated and checked in the pattern", + "typecodes must correspond 1:1 to a class in the NMDC schema. this will be checked via per-class id slot usage assertions" ; + skos:inScheme nmdc:basic_slots . + +nmdc:nmdc a owl:Ontology ; + rdfs:label "NMDC" ; + dcterms:license "https://creativecommons.org/publicdomain/zero/1.0/" ; + dcterms:title "NMDC Schema" ; + pav:version "v9.2.0" ; + skos:definition """Schema for National Microbiome Data Collaborative (NMDC). +This schema is organized into multiple modules, such as: + + * a set of core types for representing data values + * a subset of the mixs schema + * an annotation schema + * the NMDC schema itself, into which the other modules are imported""" ; + skos:editorialNote "commented out insdc_biosample_identifiers insdc_secondary_sample_identifiers... need better understanding of id patterns (at least)", + "informal ## section delimiters should be replaced with subsets ?", + "not importing any MIxS terms where the relationship between the name (SCN) and the id isn't 1:1" . + nmdc:FileTypeEnum a owl:Class, linkml:EnumDefinition ; owl:unionOf ( ) ; @@ -16144,40 +24891,19 @@ nmdc:FileTypeEnum a owl:Class, , . -nmdc:id a owl:ObjectProperty, - linkml:SlotDefinition ; - rdfs:label "id" ; - rdfs:range [ a rdfs:Datatype ; - owl:intersectionOf ( linkml:Uriorcurie [ a rdfs:Datatype ; - owl:onDatatype xsd:string ; - owl:withRestrictions ( [ xsd:pattern "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$" ] ) ] ) ] ; - skos:definition "A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI" ; - skos:editorialNote "a minimum length of 3 characters is suggested for typecodes, but 1 or 2 characters will be accepted", - "abstracted pattern: prefix:typecode-authshoulder-blade(.version)?(_seqsuffix)?", - "minting authority shoulders should probably be enumerated and checked in the pattern", - "typecodes must correspond 1:1 to a class in the NMDC schema. this will be checked via per-class id slot usage assertions" ; - skos:inScheme nmdc:basic_slots . - -nmdc:nmdc a owl:Ontology ; - rdfs:label "NMDC" ; - dcterms:license "https://creativecommons.org/publicdomain/zero/1.0/" ; - dcterms:title "NMDC Schema" ; - pav:version "v9.1.0" ; - skos:definition """Schema for National Microbiome Data Collaborative (NMDC). -This schema is organized into multiple modules, such as: - - * a set of core types for representing data values - * a subset of the mixs schema - * an annotation schema - * the NMDC schema itself, into which the other modules are imported""" ; - skos:editorialNote "commented out insdc_biosample_identifiers insdc_secondary_sample_identifiers... need better understanding of id patterns (at least)", - "informal ## section delimiters should be replaced with subsets ?", - "not importing any MIxS terms where the relationship between the name (SCN) and the id isn't 1:1" . - nmdc:TextValue a owl:Class, linkml:ClassDefinition ; rdfs:label "TextValue" ; - rdfs:subClassOf nmdc:AttributeValue ; + rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom nmdc:language_code ; + owl:onProperty nmdc:language ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:language ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:language ], + nmdc:AttributeValue ; skos:definition "A basic string value" ; skos:inScheme nmdc:core . @@ -16186,31 +24912,49 @@ nmdc:QuantityValue a owl:Class, rdfs:label "QuantityValue" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxCardinality 1 ; + owl:onProperty nmdc:has_unit ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty nmdc:has_raw_value ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; owl:onProperty nmdc:has_raw_value ], [ a owl:Restriction ; owl:maxCardinality 1 ; + owl:onProperty nmdc:has_numeric_value ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:has_minimum_numeric_value ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:has_maximum_numeric_value ], + [ a owl:Restriction ; + owl:minCardinality 0 ; owl:onProperty nmdc:has_unit ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:has_maximum_numeric_value ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:has_raw_value ], + owl:onProperty nmdc:has_numeric_value ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:has_unit ], + owl:onProperty nmdc:has_minimum_numeric_value ], [ a owl:Restriction ; owl:allValuesFrom linkml:Double ; owl:onProperty nmdc:has_numeric_value ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty nmdc:has_numeric_value ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:has_raw_value ], + owl:onProperty nmdc:has_minimum_numeric_value ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; owl:onProperty nmdc:has_unit ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty nmdc:has_numeric_value ], + owl:onProperty nmdc:has_maximum_numeric_value ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty nmdc:has_raw_value ], nmdc:AttributeValue ; skos:definition "A simple quantity, e.g. 2cm" ; skos:inScheme nmdc:core ; @@ -16222,3 +24966,96 @@ nmdc:QuantityValue a owl:Class, skos:definition "basic fields" ; skos:inScheme . +[] a owl:Restriction ; + rdfs:subClassOf nmdc:Pooling ; + owl:onProperty nmdc:designated_class ; + owl:someValuesFrom nmdc:Pooling . + +[] a owl:Restriction ; + rdfs:subClassOf nmdc:BiosampleProcessing ; + owl:onProperty nmdc:designated_class ; + owl:someValuesFrom nmdc:BiosampleProcessing . + +[] a owl:Restriction ; + rdfs:subClassOf nmdc:Extraction ; + owl:onProperty nmdc:designated_class ; + owl:someValuesFrom nmdc:Extraction . + +[] rdfs:subClassOf [ a owl:Restriction ; + owl:onProperty nmdc:rna_cont_type ; + owl:someValuesFrom linkml:String ] ; + owl:intersectionOf ( [ a owl:Restriction ; + owl:onProperty nmdc:rna_cont_well ; + owl:someValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern ".+" ] ) ] ] nmdc:Biosample ) . + +[] a owl:Restriction ; + rdfs:subClassOf nmdc:FiltrationProcess ; + owl:onProperty nmdc:designated_class ; + owl:someValuesFrom nmdc:FiltrationProcess . + +[] rdfs:subClassOf [ a owl:Restriction ; + owl:onProperty nmdc:doi_provider ; + owl:someValuesFrom linkml:String ] ; + owl:intersectionOf ( [ a owl:Restriction ; + owl:onProperty nmdc:doi_category ; + owl:someValuesFrom linkml:String ] nmdc:Doi ) . + +[] a owl:Restriction ; + rdfs:subClassOf nmdc:MixingProcess ; + owl:onProperty nmdc:designated_class ; + owl:someValuesFrom nmdc:MixingProcess . + +[] a owl:Restriction ; + rdfs:subClassOf nmdc:CollectingBiosamplesFromSite ; + owl:onProperty nmdc:designated_class ; + owl:someValuesFrom nmdc:CollectingBiosamplesFromSite . + +[] rdfs:subClassOf [ a owl:Restriction ; + owl:onProperty nmdc:dna_cont_type ; + owl:someValuesFrom linkml:String ] ; + owl:intersectionOf ( [ a owl:Restriction ; + owl:onProperty nmdc:dna_cont_well ; + owl:someValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern ".+" ] ) ] ] nmdc:Biosample ) . + +[] a owl:Restriction ; + rdfs:subClassOf nmdc:OmicsProcessing ; + owl:onProperty nmdc:designated_class ; + owl:someValuesFrom nmdc:OmicsProcessing . + +[] rdfs:subClassOf [ a owl:Restriction ; + owl:onProperty nmdc:rna_cont_well ; + owl:someValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^(?!A1|A12|H1|H12)(([A-H][1-9])|([A-H]1[0-2]))$" ] ) ] ] ; + owl:intersectionOf ( [ a owl:Restriction ; + owl:onProperty nmdc:rna_cont_type ; + owl:someValuesFrom linkml:String ] nmdc:Biosample ) . + +[] a owl:Restriction ; + rdfs:subClassOf nmdc:LibraryPreparation ; + owl:onProperty nmdc:designated_class ; + owl:someValuesFrom nmdc:LibraryPreparation . + +[] rdfs:subClassOf [ a owl:Restriction ; + owl:onProperty nmdc:dna_cont_well ; + owl:someValuesFrom [ a rdfs:Datatype ; + owl:onDatatype xsd:string ; + owl:withRestrictions ( [ xsd:pattern "^(?!A1|A12|H1|H12)(([A-H][1-9])|([A-H]1[0-2]))$" ] ) ] ] ; + owl:intersectionOf ( [ a owl:Restriction ; + owl:onProperty nmdc:dna_cont_type ; + owl:someValuesFrom linkml:String ] nmdc:Biosample ) . + +[] a owl:Restriction ; + rdfs:subClassOf nmdc:SubSamplingProcess ; + owl:onProperty nmdc:designated_class ; + owl:someValuesFrom nmdc:SubSamplingProcess . + +[] a owl:Restriction ; + rdfs:subClassOf nmdc:PlannedProcess ; + owl:onProperty nmdc:designated_class ; + owl:someValuesFrom nmdc:PlannedProcess . + diff --git a/src/schema/mixs.yaml b/src/schema/mixs.yaml index c4fc721bb1..b5ca93480d 100644 --- a/src/schema/mixs.yaml +++ b/src/schema/mixs.yaml @@ -33,222 +33,101 @@ subsets: description: A combination of a checklist and a package from_schema: http://w3id.org/mixs/terms enums: - substructure_type_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - crawlspace: {} - slab on grade: {} - basement: {} - window_cover_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - blinds: {} - curtains: {} - none: {} - room_loc_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - corner room: {} - interior room: {} - exterior wall: {} - door_type_metal_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - collapsible: {} - corrugated steel: {} - hollow: {} - rolling shutters: {} - steel plate: {} - occup_document_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - automated count: {} - estimate: {} - manual count: {} - videos: {} - biol_stat_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - wild: {} - natural: {} - semi-natural: {} - inbred line: {} - breeder's line: {} - hybrid: {} - clonal selection: {} - mutant: {} - build_docs_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - building information model: {} - commissioning report: {} - complaint logs: {} - contract administration: {} - cost estimate: {} - janitorial schedules or logs: {} - maintenance plans: {} - schedule: {} - sections: {} - shop drawings: {} - submittals: {} - ventilation system: {} - windows: {} - drawings_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - operation: {} - as built: {} - construction: {} - bid: {} - design: {} - building navigation map: {} - diagram: {} - sketch: {} - ceil_texture_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - crows feet: {} - crows-foot stomp: {} - double skip: {} - hawk and trowel: {} - knockdown: {} - popcorn: {} - orange peel: {} - rosebud stomp: {} - Santa-Fe texture: {} - skip trowel: {} - smooth: {} - stomp knockdown: {} - swirl: {} - sr_dep_env_enum: + sr_kerog_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Lacustine: {} - Fluvioldeltaic: {} - Fluviomarine: {} - Marine: {} + Type I: {} + Type II: {} + Type III: {} + Type IV: {} other: {} - light_type_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - natural light: {} - electric light: {} - desk lamp: {} - flourescent lights: {} - none: {} - room_samp_pos_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - north corner: {} - south corner: {} - west corner: {} - east corner: {} - northeast corner: {} - northwest corner: {} - southeast corner: {} - southwest corner: {} - center: {} - rel_samp_loc_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - edge of car: {} - center of car: {} - under a seat: {} - shading_device_cond_enum: + mech_struc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - damaged: {} - needs repair: {} - new: {} - rupture: {} - visible wear: {} - drainage_class_enum: + subway: {} + coach: {} + carriage: {} + elevator: {} + escalator: {} + boat: {} + train: {} + car: {} + bus: {} + filter_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - very poorly: {} - poorly: {} - somewhat poorly: {} - moderately well: {} - well: {} - excessively drained: {} - samp_weather_enum: + particulate air filter: {} + chemical air filter: {} + low-MERV pleated media: {} + HEPA: {} + electrostatic: {} + gas-phase or ultraviolet air treatments: {} + oxy_stat_samp_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - clear sky: {} - cloudy: {} - foggy: {} - hail: {} - rain: {} - snow: {} - sleet: {} - sunny: {} - windy: {} - wall_const_type_enum: + aerobic: {} + anaerobic: {} + other: {} + window_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - frame construction: {} - joisted masonry: {} - light noncombustible: {} - masonry noncombustible: {} - modified fire resistive: {} - fire resistive: {} + single-hung sash window: {} + horizontal sash window: {} + fixed window: {} arch_struc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: building: {} shed: {} home: {} - window_vert_pos_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - bottom: {} - middle: {} - top: {} - low: {} - high: {} - window_mat_enum: + ceil_finish_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - clad: {} - fiberglass: {} + drywall: {} + mineral fibre: {} + tiles: {} + PVC: {} + plasterboard: {} metal: {} - vinyl: {} + fiberglass: {} + stucco: {} + mineral wool/calcium silicate: {} wood: {} - train_stop_loc_enum: + quad_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - end: {} - mid: {} - downtown: {} - samp_capt_status_enum: + North side: {} + West side: {} + South side: {} + East side: {} + hcr_geol_age_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - active surveillance in response to an outbreak: {} - active surveillance not initiated by an outbreak: {} - farm sample: {} - market sample: {} + Archean: {} + Cambrian: {} + Carboniferous: {} + Cenozoic: {} + Cretaceous: {} + Devonian: {} + Jurassic: {} + Mesozoic: {} + Neogene: {} + Ordovician: {} + Paleogene: {} + Paleozoic: {} + Permian: {} + Precambrian: {} + Proterozoic: {} + Silurian: {} + Triassic: {} other: {} - floor_finish_mat_enum: + occup_document_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - tile: {} - wood strip or parquet: {} - carpet: {} - rug: {} - laminate wood: {} - lineoleum: {} - vinyl composition tile: {} - sheet vinyl: {} - stone: {} - bamboo: {} - cork: {} - terrazo: {} - concrete: {} - none: {} - sealed: {} - clear finish: {} - paint: {} - none or unfinished: {} + automated count: {} + estimate: {} + manual count: {} + videos: {} plant_growth_med_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -261,26 +140,215 @@ enums: soil: {} vermiculite: {} water: {} - oxy_stat_samp_enum: + ceil_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - aerobic: {} - anaerobic: {} - other: {} - window_cond_enum: + new: {} + visible wear: {} + needs repair: {} + damaged: {} + rupture: {} + gender_restroom_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + all gender: {} + female: {} + gender neurtral: {} + male: {} + male and female: {} + unisex: {} + vis_media_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + photos: {} + videos: {} + commonly of the building: {} + site context (adjacent buildings, vegetation, terrain, streets): {} + interiors: {} + equipment: {} + 3D scans: {} + door_type_wood_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + bettened and ledged: {} + battened: {} + ledged and braced: {} + ledged and framed: {} + ledged, braced and frame: {} + framed and paneled: {} + glashed or sash: {} + flush: {} + louvered: {} + wire gauged: {} + fao_class_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + Acrisols: {} + Andosols: {} + Arenosols: {} + Cambisols: {} + Chernozems: {} + Ferralsols: {} + Fluvisols: {} + Gleysols: {} + Greyzems: {} + Gypsisols: {} + Histosols: {} + Kastanozems: {} + Lithosols: {} + Luvisols: {} + Nitosols: {} + Phaeozems: {} + Planosols: {} + Podzols: {} + Podzoluvisols: {} + Rankers: {} + Regosols: {} + Rendzinas: {} + Solonchaks: {} + Solonetz: {} + Vertisols: {} + Yermosols: {} + soil_horizon_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + O horizon: {} + A horizon: {} + E horizon: {} + B horizon: {} + C horizon: {} + R layer: {} + Permafrost: {} + M horizon: {} + specific_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + operation: {} + as built: {} + construction: {} + bid: {} + design: {} + photos: {} + tidal_stage_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + low tide: {} + ebb tide: {} + flood tide: {} + high tide: {} + int_wall_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - damaged: {} - needs repair: {} new: {} - rupture: {} visible wear: {} - wall_texture_enum: + needs repair: {} + damaged: {} + rupture: {} + heat_cool_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + radiant system: {} + heat pump: {} + forced air system: {} + steam forced heat: {} + wood stove: {} + drainage_class_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + very poorly: {} + poorly: {} + somewhat poorly: {} + moderately well: {} + well: {} + excessively drained: {} + wall_const_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + frame construction: {} + joisted masonry: {} + light noncombustible: {} + masonry noncombustible: {} + modified fire resistive: {} + fire resistive: {} + samp_weather_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + clear sky: {} + cloudy: {} + foggy: {} + hail: {} + rain: {} + snow: {} + sleet: {} + sunny: {} + windy: {} + train_line_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + red: {} + green: {} + orange: {} + ceil_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + cathedral: {} + dropped: {} + concave: {} + barrel-shaped: {} + coffered: {} + cove: {} + stretched: {} + samp_dis_stage_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + dissemination: {} + growth and reproduction: {} + infection: {} + inoculation: {} + penetration: {} + other: {} + samp_md_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + DF: {} + RT: {} + KB: {} + MSL: {} + other: {} + door_comp_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + metal covered: {} + revolving: {} + sliding: {} + telescopic: {} + window_loc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + north: {} + south: {} + east: {} + west: {} + door_loc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + north: {} + south: {} + east: {} + west: {} + water_feat_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + fountain: {} + pool: {} + standing feature: {} + stream: {} + waterfall: {} + ceil_texture_enum: from_schema: http://w3id.org/mixs/terms permissible_values: crows feet: {} crows-foot stomp: {} - '': {} double skip: {} hawk and trowel: {} knockdown: {} @@ -292,21 +360,28 @@ enums: smooth: {} stomp knockdown: {} swirl: {} - profile_position_enum: + growth_habit_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - summit: {} - shoulder: {} - backslope: {} - footslope: {} - toeslope: {} - wall_loc_enum: + erect: {} + semi-erect: {} + spreading: {} + prostrate: {} + shading_device_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} + bahama shutters: {} + exterior roll blind: {} + gambrel awning: {} + hood awning: {} + porchroller awning: {} + sarasota shutters: {} + slatted aluminum: {} + solid aluminum awning: {} + sun screen: {} + tree: {} + trellis: {} + venetian awning: {} room_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -335,215 +410,91 @@ enums: lockers: {} cafe: {} warehouse: {} - door_cond_enum: + light_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - damaged: {} - needs repair: {} - new: {} - rupture: {} - visible wear: {} - organism_count_enum: + natural light: {} + electric light: {} + desk lamp: {} + flourescent lights: {} + none: {} + build_docs_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - ATP: {} - MPN: {} - other: {} - host_sex_enum: - from_schema: http://w3id.org/mixs/terms + building information model: {} + commissioning report: {} + complaint logs: {} + contract administration: {} + cost estimate: {} + janitorial schedules or logs: {} + maintenance plans: {} + schedule: {} + sections: {} + shop drawings: {} + submittals: {} + ventilation system: {} + windows: {} + window_vert_pos_enum: + from_schema: http://w3id.org/mixs/terms permissible_values: - female: {} - hermaphrodite: {} - male: {} - neuter: {} - indoor_surf_enum: + bottom: {} + middle: {} + top: {} + low: {} + high: {} + samp_collect_point_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - cabinet: {} - ceiling: {} - counter top: {} - door: {} - shelving: {} - vent cover: {} - window: {} - wall: {} - soil_horizon_enum: + well: {} + test well: {} + drilling rig: {} + wellhead: {} + separator: {} + storage tank: {} + other: {} + train_stop_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - O horizon: {} - A horizon: {} - E horizon: {} - B horizon: {} - C horizon: {} - R layer: {} - Permafrost: {} - M horizon: {} - ext_window_orient_enum: + end: {} + mid: {} + downtown: {} + door_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} - northeast: {} - southeast: {} - southwest: {} - northwest: {} - cur_land_use_enum: + damaged: {} + needs repair: {} + new: {} + rupture: {} + visible wear: {} + room_condt_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - badlands: {} - cities: {} - conifers: - annotations: - originally: conifers (e.g. pine,spruce,fir,cypress) - examples: - - value: cypress - - value: fir - - value: pine - - value: spruce - crop trees: - annotations: - originally: crop trees (nuts,fruit,christmas trees,nursery trees) - examples: - - value: christmas trees - - value: fruit - - value: nursery trees - - value: nuts - farmstead: {} - gravel: {} - hardwoods: - annotations: - originally: hardwoods (e.g. oak,hickory,elm,aspen) - examples: - - value: aspen - - value: elm - - value: hickory - - value: oak - hayland: {} - horticultural plants: - annotations: - originally: horticultural plants (e.g. tulips) - examples: - - value: tulips - industrial areas: {} - intermixed hardwood and conifers: {} - marshlands: - annotations: - originally: marshlands (grass,sedges,rushes) - examples: - - value: grass - - value: rushes - - value: sedgees - meadows: - annotations: - originally: meadows (grasses,alfalfa,fescue,bromegrass,timothy) - examples: - - value: alfalfa - - value: bromegrass - - value: fescue - - value: grasses - - value: timothy - mines/quarries: {} - mudflats: {} - oil waste areas: {} - pastureland: - annotations: - originally: pastureland (grasslands used for livestock grazing) - comments: - - grasslands used for livestock grazing - permanent snow or ice: {} - rainforest: - annotations: - originally: rainforest (evergreen forest receiving greater than 406 cm annual rainfall) - comments: - - evergreen forest receiving greater than 406 cm annual rainfall - rangeland: {} - roads/railroads: {} - rock: {} - row crops: {} - saline seeps: {} - salt flats: {} - sand: {} - shrub crops: - annotations: - originally: shrub crops (blueberries,nursery ornamentals,filberts) - examples: - - value: blueberries - - value: filberts - - value: nursery ornamentals - shrub land: - annotations: - originally: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) - examples: - - value: creosote bush - - value: eucalyptus - - value: mesquite - - value: sage-brush - - value: shrub oak - small grains: {} - successional shrub land: - annotations: - originally: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries) - examples: - - value: blackberries - - value: chokecherry - - value: hazels - - value: shrub dogwoods - - value: sumacs - - value: tree saplings - swamp: - annotations: - originally: swamp (permanent or semi-permanent water body dominated by woody plants) - comments: - - permanent or semi-permanent water body dominated by woody plants - tropical: - annotations: - originally: tropical (e.g. mangrove,palms) - examples: - - value: mangrove - - value: palms - tundra: - annotations: - originally: tundra (mosses,lichens) - examples: - - value: lichens - - value: mosses - vegetable crops: {} - vine crops: - annotations: - originally: vine crops (grapes) - examples: - - value: grapes - fao_class_enum: + new: {} + visible wear: {} + needs repair: {} + damaged: {} + rupture: {} + visible signs of mold/mildew: {} + door_type_metal_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Acrisols: {} - Andosols: {} - Arenosols: {} - Cambisols: {} - Chernozems: {} - Ferralsols: {} - Fluvisols: {} - Gleysols: {} - Greyzems: {} - Gypsisols: {} - Histosols: {} - Kastanozems: {} - Lithosols: {} - Luvisols: {} - Nitosols: {} - Phaeozems: {} - Planosols: {} - Podzols: {} - Podzoluvisols: {} - Rankers: {} - Regosols: {} - Rendzinas: {} - Solonchaks: {} - Solonetz: {} - Vertisols: {} - Yermosols: {} + collapsible: {} + corrugated steel: {} + hollow: {} + rolling shutters: {} + steel plate: {} + tillage_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + drill: {} + cutting disc: {} + ridge till: {} + strip tillage: {} + zonal tillage: {} + chisel: {} + tined: {} + mouldboard: {} + disc plough: {} sr_lithology_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -552,160 +503,97 @@ enums: Coal: {} Biosilicieous: {} other: {} - door_mat_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - aluminum: {} - cellular PVC: {} - engineered plastic: {} - fiberboard: {} - fiberglass: {} - metal: {} - thermoplastic alloy: {} - vinyl: {} - wood: {} - wood/plastic composite: {} - ceil_finish_mat_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - drywall: {} - mineral fibre: {} - tiles: {} - PVC: {} - plasterboard: {} - metal: {} - fiberglass: {} - stucco: {} - mineral wool/calcium silicate: {} - wood: {} - furniture_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - cabinet: {} - chair: {} - desks: {} - growth_habit_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - erect: {} - semi-erect: {} - spreading: {} - prostrate: {} - door_type_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - composite: {} - metal: {} - wooden: {} - gender_restroom_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - all gender: {} - female: {} - gender neurtral: {} - male: {} - male and female: {} - unisex: {} - door_comp_type_enum: + door_move_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - metal covered: {} + collapsible: {} + folding: {} revolving: {} + rolling shutter: {} sliding: {} - telescopic: {} - freq_clean_enum: + swinging: {} + window_cover_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Daily: {} - Weekly: {} - Monthly: {} - Quarterly: {} - Annually: {} - other: {} - samp_collect_point_enum: + blinds: {} + curtains: {} + none: {} + lithology_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - well: {} - test well: {} - drilling rig: {} - wellhead: {} - separator: {} - storage tank: {} + Basement: {} + Chalk: {} + Chert: {} + Coal: {} + Conglomerate: {} + Diatomite: {} + Dolomite: {} + Limestone: {} + Sandstone: {} + Shale: {} + Siltstone: {} + Volcanic: {} other: {} - building_setting_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - urban: {} - suburban: {} - exurban: {} - rural: {} - handidness_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - ambidexterity: {} - left handedness: {} - mixed-handedness: {} - right handedness: {} - window_horiz_pos_enum: + samp_floor_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - left: {} - middle: {} - right: {} - door_loc_enum: + 1st floor: {} + 2nd floor: {} + basement: {} + lobby: {} + door_direct_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} - ext_wall_orient_enum: + inward: {} + outward: {} + sideways: {} + heat_deliv_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: north: {} south: {} east: {} west: {} - northeast: {} - southeast: {} - southwest: {} - northwest: {} - weekday_enum: + sr_dep_env_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Monday: {} - Tuesday: {} - Wednesday: {} - Thursday: {} - Friday: {} - Saturday: {} - Sunday: {} - lithology_enum: + Lacustine: {} + Fluvioldeltaic: {} + Fluviomarine: {} + Marine: {} + other: {} + sr_geol_age_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Basement: {} - Chalk: {} - Chert: {} - Coal: {} - Conglomerate: {} - Diatomite: {} - Dolomite: {} - Limestone: {} - Sandstone: {} - Shale: {} - Siltstone: {} - Volcanic: {} + Archean: {} + Cambrian: {} + Carboniferous: {} + Cenozoic: {} + Cretaceous: {} + Devonian: {} + Jurassic: {} + Mesozoic: {} + Neogene: {} + Ordovician: {} + Paleogene: {} + Paleozoic: {} + Permian: {} + Precambrian: {} + Proterozoic: {} + Silurian: {} + Triassic: {} other: {} - ceil_type_enum: + ext_wall_orient_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - cathedral: {} - dropped: {} - concave: {} - barrel-shaped: {} - coffered: {} - cove: {} - stretched: {} + north: {} + south: {} + east: {} + west: {} + northeast: {} + southeast: {} + southwest: {} + northwest: {} floor_water_mold_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -718,6 +606,42 @@ enums: peeling paint or wallpaper: {} bulging walls: {} condensation: {} + window_cond_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + damaged: {} + needs repair: {} + new: {} + rupture: {} + visible wear: {} + shading_device_cond_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + damaged: {} + needs repair: {} + new: {} + rupture: {} + visible wear: {} + wall_loc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + north: {} + south: {} + east: {} + west: {} + door_mat_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + aluminum: {} + cellular PVC: {} + engineered plastic: {} + fiberboard: {} + fiberglass: {} + metal: {} + thermoplastic alloy: {} + vinyl: {} + wood: {} + wood/plastic composite: {} plant_sex_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -750,14 +674,23 @@ enums: Trimonoecious: {} Trioecious: {} Unisexual: {} - int_wall_cond_enum: + wall_texture_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - new: {} - visible wear: {} - needs repair: {} - damaged: {} - rupture: {} + crows feet: {} + crows-foot stomp: {} + '': {} + double skip: {} + hawk and trowel: {} + knockdown: {} + popcorn: {} + orange peel: {} + rosebud stomp: {} + Santa-Fe texture: {} + skip trowel: {} + smooth: {} + stomp knockdown: {} + swirl: {} surf_material_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -776,50 +709,32 @@ enums: tile: {} vinyl: {} wood: {} - indoor_space_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - bedroom: {} - office: {} - bathroom: {} - foyer: {} - kitchen: {} - locker room: {} - hallway: {} - elevator: {} - season_use_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - Spring: {} - Summer: {} - Fall: {} - Winter: {} - tidal_stage_enum: + biotic_relationship_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - low tide: {} - ebb tide: {} - flood tide: {} - high tide: {} - specific_enum: + free living: {} + parasite: {} + commensal: {} + symbiont: {} + samp_subtype_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - operation: {} - as built: {} - construction: {} - bid: {} - design: {} - photos: {} - vis_media_enum: + oil phase: {} + water phase: {} + biofilm: {} + not applicable: {} + other: {} + hcr_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - photos: {} - videos: {} - commonly of the building: {} - site context (adjacent buildings, vegetation, terrain, streets): {} - interiors: {} - equipment: {} - 3D scans: {} + Oil Reservoir: {} + Gas Reservoir: {} + Oil Sand: {} + Coalbed: {} + Shale: {} + Tight Oil Reservoir: {} + Tight Gas Reservoir: {} + other: {} wall_finish_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -834,194 +749,121 @@ enums: wood: {} metal: {} masonry: {} - shading_device_type_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - bahama shutters: {} - exterior roll blind: {} - gambrel awning: {} - hood awning: {} - porchroller awning: {} - sarasota shutters: {} - slatted aluminum: {} - solid aluminum awning: {} - sun screen: {} - tree: {} - trellis: {} - venetian awning: {} - sediment_type_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - biogenous: {} - cosmogenous: {} - hydrogenous: {} - lithogenous: {} - window_loc_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - north: {} - south: {} - east: {} - west: {} - heat_deliv_loc_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - north: {} - south: {} - east: {} - west: {} - train_stat_loc_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - south station above ground: {} - south station underground: {} - south station amtrak: {} - forest hills: {} - riverside: {} - wall_surf_treatment_enum: + season_use_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - painted: {} - wall paper: {} - no treatment: {} - paneling: {} - stucco: {} - fabric: {} - quad_pos_enum: + Spring: {} + Summer: {} + Fall: {} + Winter: {} + floor_struc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - North side: {} - West side: {} - South side: {} - East side: {} - sr_kerog_type_enum: + balcony: {} + floating floor: {} + glass floor: {} + raised floor: {} + sprung floor: {} + wood-framed: {} + concrete: {} + depos_env_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Type I: {} - Type II: {} - Type III: {} - Type IV: {} + Continental - Alluvial: {} + Continental - Aeolian: {} + Continental - Fluvial: {} + Continental - Lacustrine: {} + Transitional - Deltaic: {} + Transitional - Tidal: {} + Transitional - Lagoonal: {} + Transitional - Beach: {} + Transitional - Lake: {} + Marine - Shallow: {} + Marine - Deep: {} + Marine - Reef: {} + Other - Evaporite: {} + Other - Glacial: {} + Other - Volcanic: {} other: {} - water_feat_type_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - fountain: {} - pool: {} - standing feature: {} - stream: {} - waterfall: {} - ceil_cond_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - new: {} - visible wear: {} - needs repair: {} - damaged: {} - rupture: {} - samp_md_enum: + room_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - DF: {} - RT: {} - KB: {} - MSL: {} - other: {} - train_line_enum: + corner room: {} + interior room: {} + exterior wall: {} + profile_position_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - red: {} - green: {} - orange: {} - samp_dis_stage_enum: + summit: {} + shoulder: {} + backslope: {} + footslope: {} + toeslope: {} + indoor_space_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - dissemination: {} - growth and reproduction: {} - infection: {} - inoculation: {} - penetration: {} - other: {} - depos_env_enum: + bedroom: {} + office: {} + bathroom: {} + foyer: {} + kitchen: {} + locker room: {} + hallway: {} + elevator: {} + samp_capt_status_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Continental - Alluvial: {} - Continental - Aeolian: {} - Continental - Fluvial: {} - Continental - Lacustrine: {} - Transitional - Deltaic: {} - Transitional - Tidal: {} - Transitional - Lagoonal: {} - Transitional - Beach: {} - Transitional - Lake: {} - Marine - Shallow: {} - Marine - Deep: {} - Marine - Reef: {} - Other - Evaporite: {} - Other - Glacial: {} - Other - Volcanic: {} + active surveillance in response to an outbreak: {} + active surveillance not initiated by an outbreak: {} + farm sample: {} + market sample: {} other: {} - mech_struc_enum: + furniture_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - subway: {} - coach: {} - carriage: {} - elevator: {} - escalator: {} - boat: {} - train: {} - car: {} - bus: {} - samp_floor_enum: + cabinet: {} + chair: {} + desks: {} + hc_produced_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - 1st floor: {} - 2nd floor: {} - basement: {} - lobby: {} - sr_geol_age_enum: + Oil: {} + Gas-Condensate: {} + Gas: {} + Bitumen: {} + Coalbed Methane: {} + other: {} + biol_stat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Archean: {} - Cambrian: {} - Carboniferous: {} - Cenozoic: {} - Cretaceous: {} - Devonian: {} - Jurassic: {} - Mesozoic: {} - Neogene: {} - Ordovician: {} - Paleogene: {} - Paleozoic: {} - Permian: {} - Precambrian: {} - Proterozoic: {} - Silurian: {} - Triassic: {} - other: {} - window_type_enum: + wild: {} + natural: {} + semi-natural: {} + inbred line: {} + breeder's line: {} + hybrid: {} + clonal selection: {} + mutant: {} + window_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - single-hung sash window: {} - horizontal sash window: {} - fixed window: {} - build_occup_type_enum: + clad: {} + fiberglass: {} + metal: {} + vinyl: {} + wood: {} + room_samp_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - office: {} - market: {} - restaurant: {} - residence: {} - school: {} - residential: {} - commercial: {} - low rise: {} - high rise: {} - wood framed: {} - health care: {} - airport: {} - sports complex: {} + north corner: {} + south corner: {} + west corner: {} + east corner: {} + northeast corner: {} + northwest corner: {} + southeast corner: {} + southwest corner: {} + center: {} surf_air_cont_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -1033,80 +875,229 @@ enums: radon: {} nutrients: {} biocides: {} - door_direct_enum: + door_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - inward: {} - outward: {} - sideways: {} - filter_type_enum: + composite: {} + metal: {} + wooden: {} + organism_count_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - particulate air filter: {} - chemical air filter: {} - low-MERV pleated media: {} - HEPA: {} - electrostatic: {} - gas-phase or ultraviolet air treatments: {} - floor_struc_enum: + ATP: {} + MPN: {} + other: {} + sediment_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - balcony: {} - floating floor: {} - glass floor: {} - raised floor: {} - sprung floor: {} - wood-framed: {} + biogenous: {} + cosmogenous: {} + hydrogenous: {} + lithogenous: {} + substructure_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + crawlspace: {} + slab on grade: {} + basement: {} + indoor_surf_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + cabinet: {} + ceiling: {} + counter top: {} + door: {} + shelving: {} + vent cover: {} + window: {} + wall: {} + wall_surf_treatment_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + painted: {} + wall paper: {} + no treatment: {} + paneling: {} + stucco: {} + fabric: {} + drawings_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + operation: {} + as built: {} + construction: {} + bid: {} + design: {} + building navigation map: {} + diagram: {} + sketch: {} + floor_finish_mat_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + tile: {} + wood strip or parquet: {} + carpet: {} + rug: {} + laminate wood: {} + lineoleum: {} + vinyl composition tile: {} + sheet vinyl: {} + stone: {} + bamboo: {} + cork: {} + terrazo: {} concrete: {} - heat_cool_type_enum: + none: {} + sealed: {} + clear finish: {} + paint: {} + none or unfinished: {} + floor_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - radiant system: {} - heat pump: {} - forced air system: {} - steam forced heat: {} - wood stove: {} - tillage_enum: + new: {} + visible wear: {} + needs repair: {} + damaged: {} + rupture: {} + cur_land_use_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - drill: {} - cutting disc: {} - ridge till: {} - strip tillage: {} - zonal tillage: {} - chisel: {} - tined: {} - mouldboard: {} - disc plough: {} - hcr_geol_age_enum: + badlands: {} + cities: {} + conifers: + annotations: + originally: conifers (e.g. pine,spruce,fir,cypress) + examples: + - value: cypress + - value: fir + - value: pine + - value: spruce + crop trees: + annotations: + originally: crop trees (nuts,fruit,christmas trees,nursery trees) + examples: + - value: christmas trees + - value: fruit + - value: nursery trees + - value: nuts + farmstead: {} + gravel: {} + hardwoods: + annotations: + originally: hardwoods (e.g. oak,hickory,elm,aspen) + examples: + - value: aspen + - value: elm + - value: hickory + - value: oak + hayland: {} + horticultural plants: + annotations: + originally: horticultural plants (e.g. tulips) + examples: + - value: tulips + industrial areas: {} + intermixed hardwood and conifers: {} + marshlands: + annotations: + originally: marshlands (grass,sedges,rushes) + examples: + - value: grass + - value: rushes + - value: sedgees + meadows: + annotations: + originally: meadows (grasses,alfalfa,fescue,bromegrass,timothy) + examples: + - value: alfalfa + - value: bromegrass + - value: fescue + - value: grasses + - value: timothy + mines/quarries: {} + mudflats: {} + oil waste areas: {} + pastureland: + annotations: + originally: pastureland (grasslands used for livestock grazing) + comments: + - grasslands used for livestock grazing + permanent snow or ice: {} + rainforest: + annotations: + originally: rainforest (evergreen forest receiving greater than 406 cm annual rainfall) + comments: + - evergreen forest receiving greater than 406 cm annual rainfall + rangeland: {} + roads/railroads: {} + rock: {} + row crops: {} + saline seeps: {} + salt flats: {} + sand: {} + shrub crops: + annotations: + originally: shrub crops (blueberries,nursery ornamentals,filberts) + examples: + - value: blueberries + - value: filberts + - value: nursery ornamentals + shrub land: + annotations: + originally: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) + examples: + - value: creosote bush + - value: eucalyptus + - value: mesquite + - value: sage-brush + - value: shrub oak + small grains: {} + successional shrub land: + annotations: + originally: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries) + examples: + - value: blackberries + - value: chokecherry + - value: hazels + - value: shrub dogwoods + - value: sumacs + - value: tree saplings + swamp: + annotations: + originally: swamp (permanent or semi-permanent water body dominated by woody plants) + comments: + - permanent or semi-permanent water body dominated by woody plants + tropical: + annotations: + originally: tropical (e.g. mangrove,palms) + examples: + - value: mangrove + - value: palms + tundra: + annotations: + originally: tundra (mosses,lichens) + examples: + - value: lichens + - value: mosses + vegetable crops: {} + vine crops: + annotations: + originally: vine crops (grapes) + examples: + - value: grapes + window_horiz_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Archean: {} - Cambrian: {} - Carboniferous: {} - Cenozoic: {} - Cretaceous: {} - Devonian: {} - Jurassic: {} - Mesozoic: {} - Neogene: {} - Ordovician: {} - Paleogene: {} - Paleozoic: {} - Permian: {} - Precambrian: {} - Proterozoic: {} - Silurian: {} - Triassic: {} - other: {} - samp_subtype_enum: + left: {} + middle: {} + right: {} + rel_samp_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - oil phase: {} - water phase: {} - biofilm: {} - not applicable: {} - other: {} + edge of car: {} + center of car: {} + under a seat: {} room_connected_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -1121,72 +1112,81 @@ enums: mail room: {} office: {} stairwell: {} - floor_cond_enum: + freq_clean_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - new: {} - visible wear: {} - needs repair: {} - damaged: {} - rupture: {} - hc_produced_enum: + Daily: {} + Weekly: {} + Monthly: {} + Quarterly: {} + Annually: {} + other: {} + building_setting_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Oil: {} - Gas-Condensate: {} - Gas: {} - Bitumen: {} - Coalbed Methane: {} - other: {} - door_type_wood_enum: + urban: {} + suburban: {} + exurban: {} + rural: {} + ext_window_orient_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - bettened and ledged: {} - battened: {} - ledged and braced: {} - ledged and framed: {} - ledged, braced and frame: {} - framed and paneled: {} - glashed or sash: {} - flush: {} - louvered: {} - wire gauged: {} - hcr_enum: + north: {} + south: {} + east: {} + west: {} + northeast: {} + southeast: {} + southwest: {} + northwest: {} + handidness_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Oil Reservoir: {} - Gas Reservoir: {} - Oil Sand: {} - Coalbed: {} - Shale: {} - Tight Oil Reservoir: {} - Tight Gas Reservoir: {} - other: {} - biotic_relationship_enum: + ambidexterity: {} + left handedness: {} + mixed-handedness: {} + right handedness: {} + host_sex_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - free living: {} - parasite: {} - commensal: {} - symbiont: {} - door_move_enum: + female: {} + hermaphrodite: {} + male: {} + neuter: {} + build_occup_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - collapsible: {} - folding: {} - revolving: {} - rolling shutter: {} - sliding: {} - swinging: {} - room_condt_enum: + office: {} + market: {} + restaurant: {} + residence: {} + school: {} + residential: {} + commercial: {} + low rise: {} + high rise: {} + wood framed: {} + health care: {} + airport: {} + sports complex: {} + weekday_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - new: {} - visible wear: {} - needs repair: {} - damaged: {} - rupture: {} - visible signs of mold/mildew: {} + Monday: {} + Tuesday: {} + Wednesday: {} + Thursday: {} + Friday: {} + Saturday: {} + Sunday: {} + train_stat_loc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + south station above ground: {} + south station underground: {} + south station amtrak: {} + forest hills: {} + riverside: {} slots: abs_air_humidity: annotations: @@ -11229,30 +11229,30 @@ slots: slot_uri: MIXS:0000156 multivalued: false range: QuantityValue - nucleic acid sequence source field: - from_schema: http://w3id.org/mixs/terms - abstract: true has raw value: from_schema: http://w3id.org/mixs/ranges string_serialization: '{has numeric value} {has unit}' owner: QuantityValue - environment field: - description: field describing environmental aspect of a sample + nucleic acid sequence source field: from_schema: http://w3id.org/mixs/terms abstract: true - core field: - description: basic fields + sequencing field: from_schema: http://w3id.org/mixs/terms abstract: true has numeric value: from_schema: http://w3id.org/mixs/ranges owner: QuantityValue range: double + core field: + description: basic fields + from_schema: http://w3id.org/mixs/terms + abstract: true has unit: description: Example "m" from_schema: http://w3id.org/mixs/ranges owner: QuantityValue - sequencing field: + environment field: + description: field describing environmental aspect of a sample from_schema: http://w3id.org/mixs/terms abstract: true investigation field: