From 5a577cab0c75767f396e3d3128877da21c4f89e0 Mon Sep 17 00:00:00 2001 From: "Mark A. Miller" Date: Sun, 5 Mar 2023 14:01:56 -0500 Subject: [PATCH] regen --- assets/mixs_regen/mixs_subset.yaml | 3036 +++---- .../slots_associated_with_biosample.tsv | 72 +- ...ciated_with_biosample_omics_processing.tsv | 72 +- nmdc_schema/nmdc.py | 2458 +++-- nmdc_schema/nmdc_materialized_patterns.yaml | 3012 ++++--- nmdc_schema/nmdc_schema_merged.yaml | 4122 +++++---- project/nmdc_materialized_patterns.yaml | 3012 ++++--- project/nmdc_schema_merged.yaml | 4122 +++++---- project/owl/nmdc.owl.ttl | 7958 ++++++++--------- .../Database-functional-annotations.ttl | 28 +- src/data/output/Database-mags-activities.ttl | 44 +- src/data/output/Database-multiple-paths.json | 81 + src/data/output/Database-multiple-paths.ttl | 58 + src/data/output/Database-multiple-paths.yaml | 52 + src/data/output/Database-nmdc-example.ttl | 8 +- .../output/Database-omics-processings.ttl | 8 +- src/data/output/OmicsProcessing-1.ttl | 4 +- src/data/output/README.md | 3061 +++---- src/data/output/Study-exhaustive.ttl | 12 +- src/schema/mixs.yaml | 1560 ++-- 20 files changed, 16473 insertions(+), 16307 deletions(-) create mode 100644 src/data/output/Database-multiple-paths.json create mode 100644 src/data/output/Database-multiple-paths.ttl create mode 100644 src/data/output/Database-multiple-paths.yaml diff --git a/assets/mixs_regen/mixs_subset.yaml b/assets/mixs_regen/mixs_subset.yaml index 0539a19f23..075ee34209 100644 --- a/assets/mixs_regen/mixs_subset.yaml +++ b/assets/mixs_regen/mixs_subset.yaml @@ -41,20 +41,120 @@ subsets: description: A combination of a checklist and a package from_schema: http://w3id.org/mixs/terms enums: - heat_cool_type_enum: - name: heat_cool_type_enum + occup_document_enum: + name: occup_document_enum from_schema: http://w3id.org/mixs/terms permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + sediment_type_enum: + name: sediment_type_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + biogenous: + text: biogenous + cosmogenous: + text: cosmogenous + hydrogenous: + text: hydrogenous + lithogenous: + text: lithogenous + ext_wall_orient_enum: + name: ext_wall_orient_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + train_line_enum: + name: train_line_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + red: + text: red + green: + text: green + orange: + text: orange + building_setting_enum: + name: building_setting_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + room_samp_pos_enum: + name: room_samp_pos_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + wall_loc_enum: + name: wall_loc_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + samp_md_enum: + name: samp_md_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL + other: + text: other cur_land_use_enum: name: cur_land_use_enum from_schema: http://w3id.org/mixs/terms @@ -130,28 +230,52 @@ enums: text: swamp (permanent or semi-permanent water body dominated by woody plants) crop trees (nuts,fruit,christmas trees,nursery trees): text: crop trees (nuts,fruit,christmas trees,nursery trees) - mech_struc_enum: - name: mech_struc_enum + train_stat_loc_enum: + name: train_stat_loc_enum from_schema: http://w3id.org/mixs/terms permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside + door_direct_enum: + name: door_direct_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + floor_water_mold_enum: + name: floor_water_mold_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation hcr_geol_age_enum: name: hcr_geol_age_enum from_schema: http://w3id.org/mixs/terms @@ -192,98 +316,48 @@ enums: text: Triassic other: text: other - ceil_finish_mat_enum: - name: ceil_finish_mat_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - host_sex_enum: - name: host_sex_enum + surf_air_cont_enum: + name: surf_air_cont_enum from_schema: http://w3id.org/mixs/terms permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - room_samp_pos_enum: - name: room_samp_pos_enum + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + drawings_enum: + name: drawings_enum from_schema: http://w3id.org/mixs/terms permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - biol_stat_enum: - name: biol_stat_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - season_use_enum: - name: season_use_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - ext_window_orient_enum: - name: ext_window_orient_enum + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + door_loc_enum: + name: door_loc_enum from_schema: http://w3id.org/mixs/terms permissible_values: north: @@ -294,84 +368,20 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - floor_finish_mat_enum: - name: floor_finish_mat_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - tile: - text: tile - wood strip or parquet: - text: wood strip or parquet - carpet: - text: carpet - rug: - text: rug - laminate wood: - text: laminate wood - lineoleum: - text: lineoleum - vinyl composition tile: - text: vinyl composition tile - sheet vinyl: - text: sheet vinyl - stone: - text: stone - bamboo: - text: bamboo - cork: - text: cork - terrazo: - text: terrazo - concrete: - text: concrete - none: - text: none - sealed: - text: sealed - clear finish: - text: clear finish - paint: - text: paint - none or unfinished: - text: none or unfinished - samp_capt_status_enum: - name: samp_capt_status_enum + sr_dep_env_enum: + name: sr_dep_env_enum from_schema: http://w3id.org/mixs/terms permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine other: text: other - filter_type_enum: - name: filter_type_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments room_condt_enum: name: room_condt_enum from_schema: http://w3id.org/mixs/terms @@ -388,6 +398,72 @@ enums: text: rupture visible signs of mold/mildew: text: visible signs of mold/mildew + samp_dis_stage_enum: + name: samp_dis_stage_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other + quad_pos_enum: + name: quad_pos_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + samp_floor_enum: + name: samp_floor_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + handidness_enum: + name: handidness_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + profile_position_enum: + name: profile_position_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope vis_media_enum: name: vis_media_enum from_schema: http://w3id.org/mixs/terms @@ -406,48 +482,176 @@ enums: text: equipment 3D scans: text: 3D scans - door_move_enum: - name: door_move_enum + substructure_type_enum: + name: substructure_type_enum from_schema: http://w3id.org/mixs/terms permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - plant_sex_enum: - name: plant_sex_enum + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + lithology_enum: + name: lithology_enum from_schema: http://w3id.org/mixs/terms permissible_values: - Androdioecious: - text: Androdioecious - Androecious: - text: Androecious - Androgynous: - text: Androgynous - Androgynomonoecious: - text: Androgynomonoecious - Andromonoecious: - text: Andromonoecious - Bisexual: - text: Bisexual - Dichogamous: - text: Dichogamous - Diclinous: - text: Diclinous - Dioecious: - text: Dioecious - Gynodioecious: - text: Gynodioecious - Gynoecious: - text: Gynoecious + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic + other: + text: other + arch_struc_enum: + name: arch_struc_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + door_type_enum: + name: door_type_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + sr_kerog_type_enum: + name: sr_kerog_type_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + ceil_cond_enum: + name: ceil_cond_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown + int_wall_cond_enum: + name: int_wall_cond_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + plant_sex_enum: + name: plant_sex_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + Androdioecious: + text: Androdioecious + Androecious: + text: Androecious + Androgynous: + text: Androgynous + Androgynomonoecious: + text: Androgynomonoecious + Andromonoecious: + text: Andromonoecious + Bisexual: + text: Bisexual + Dichogamous: + text: Dichogamous + Diclinous: + text: Diclinous + Dioecious: + text: Dioecious + Gynodioecious: + text: Gynodioecious + Gynoecious: + text: Gynoecious Gynomonoecious: text: Gynomonoecious Hermaphroditic: @@ -484,84 +688,164 @@ enums: text: Trioecious Unisexual: text: Unisexual - door_type_enum: - name: door_type_enum + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: http://w3id.org/mixs/terms permissible_values: - composite: - text: composite - metal: - text: metal - wooden: - text: wooden - surf_material_enum: - name: surf_material_enum + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat + tidal_stage_enum: + name: tidal_stage_enum from_schema: http://w3id.org/mixs/terms permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass - metal: - text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile - vinyl: - text: vinyl - wood: - text: wood - tillage_enum: - name: tillage_enum + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + samp_capt_status_enum: + name: samp_capt_status_enum from_schema: http://w3id.org/mixs/terms permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - window_cover_enum: - name: window_cover_enum + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample + other: + text: other + sr_lithology_enum: + name: sr_lithology_enum from_schema: http://w3id.org/mixs/terms permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - room_connected_enum: - name: room_connected_enum + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + depos_env_enum: + name: depos_env_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic + other: + text: other + sr_geol_age_enum: + name: sr_geol_age_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + hcr_enum: + name: hcr_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir + other: + text: other + room_loc_enum: + name: room_loc_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + room_type_enum: + name: room_type_enum from_schema: http://w3id.org/mixs/terms permissible_values: attic: @@ -582,160 +866,138 @@ enums: text: kitchen mail room: text: mail room - office: - text: office + private office: + text: private office + open office: + text: open office stairwell: text: stairwell - train_line_enum: - name: train_line_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - samp_dis_stage_enum: - name: samp_dis_stage_enum + ',restroom': + text: ',restroom' + lobby: + text: lobby + vestibule: + text: vestibule + mechanical or electrical room: + text: mechanical or electrical room + data center: + text: data center + laboratory_wet: + text: laboratory_wet + laboratory_dry: + text: laboratory_dry + gymnasium: + text: gymnasium + natatorium: + text: natatorium + auditorium: + text: auditorium + lockers: + text: lockers + cafe: + text: cafe + warehouse: + text: warehouse + growth_habit_enum: + name: growth_habit_enum from_schema: http://w3id.org/mixs/terms permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other - profile_position_enum: - name: profile_position_enum + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + door_comp_type_enum: + name: door_comp_type_enum from_schema: http://w3id.org/mixs/terms permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - build_docs_enum: - name: build_docs_enum + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic + floor_struc_enum: + name: floor_struc_enum from_schema: http://w3id.org/mixs/terms permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - sr_lithology_enum: - name: sr_lithology_enum + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + window_cover_enum: + name: window_cover_enum from_schema: http://w3id.org/mixs/terms permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous - other: - text: other - wall_const_type_enum: - name: wall_const_type_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - oxy_stat_samp_enum: - name: oxy_stat_samp_enum + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + freq_clean_enum: + name: freq_clean_enum from_schema: http://w3id.org/mixs/terms permissible_values: - aerobic: - text: aerobic - anaerobic: - text: anaerobic + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually other: text: other - plant_growth_med_enum: - name: plant_growth_med_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - other artificial liquid medium: - text: other artificial liquid medium - other artificial solid medium: - text: other artificial solid medium - peat moss: - text: peat moss - perlite: - text: perlite - pumice: - text: pumice - sand: - text: sand - soil: - text: soil - vermiculite: - text: vermiculite - water: - text: water - weekday_enum: - name: weekday_enum + wall_texture_enum: + name: wall_texture_enum from_schema: http://w3id.org/mixs/terms permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl window_mat_enum: name: window_mat_enum from_schema: http://w3id.org/mixs/terms @@ -750,152 +1012,66 @@ enums: text: vinyl wood: text: wood - furniture_enum: - name: furniture_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - ceil_cond_enum: - name: ceil_cond_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - room_type_enum: - name: room_type_enum + light_type_enum: + name: light_type_enum from_schema: http://w3id.org/mixs/terms permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - private office: - text: private office - open office: - text: open office - stairwell: - text: stairwell - ',restroom': - text: ',restroom' - lobby: - text: lobby - vestibule: - text: vestibule - mechanical or electrical room: - text: mechanical or electrical room - data center: - text: data center - laboratory_wet: - text: laboratory_wet - laboratory_dry: - text: laboratory_dry - gymnasium: - text: gymnasium - natatorium: - text: natatorium - auditorium: - text: auditorium - lockers: - text: lockers - cafe: - text: cafe - warehouse: - text: warehouse - floor_cond_enum: - name: floor_cond_enum + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + season_use_enum: + name: season_use_enum from_schema: http://w3id.org/mixs/terms permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - window_horiz_pos_enum: - name: window_horiz_pos_enum + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + soil_horizon_enum: + name: soil_horizon_enum from_schema: http://w3id.org/mixs/terms permissible_values: - left: - text: left - middle: - text: middle - right: - text: right - wall_loc_enum: - name: wall_loc_enum + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost + wall_const_type_enum: + name: wall_const_type_enum from_schema: http://w3id.org/mixs/terms permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - freq_clean_enum: - name: freq_clean_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually - other: - text: other - drainage_class_enum: - name: drainage_class_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - very poorly: - text: very poorly - poorly: - text: poorly - somewhat poorly: - text: somewhat poorly - moderately well: - text: moderately well - well: - text: well - excessively drained: - text: excessively drained + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive shading_device_type_enum: name: shading_device_type_enum from_schema: http://w3id.org/mixs/terms @@ -924,146 +1100,270 @@ enums: text: trellis venetian awning: text: venetian awning - sr_kerog_type_enum: - name: sr_kerog_type_enum + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: http://w3id.org/mixs/terms permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - shading_device_cond_enum: - name: shading_device_cond_enum + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + water_feat_type_enum: + name: water_feat_type_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall + filter_type_enum: + name: filter_type_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + tillage_enum: + name: tillage_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + wall_surf_treatment_enum: + name: wall_surf_treatment_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + painted: + text: painted + wall paper: + text: wall paper + no treatment: + text: no treatment + paneling: + text: paneling + stucco: + text: stucco + fabric: + text: fabric + floor_cond_enum: + name: floor_cond_enum from_schema: http://w3id.org/mixs/terms permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair new: text: new - rupture: - text: rupture visible wear: text: visible wear - hcr_enum: - name: hcr_enum + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + weekday_enum: + name: weekday_enum from_schema: http://w3id.org/mixs/terms permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - ceil_type_enum: - name: ceil_type_enum + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + window_horiz_pos_enum: + name: window_horiz_pos_enum from_schema: http://w3id.org/mixs/terms permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - samp_subtype_enum: - name: samp_subtype_enum + left: + text: left + middle: + text: middle + right: + text: right + window_type_enum: + name: window_type_enum from_schema: http://w3id.org/mixs/terms permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other - build_occup_type_enum: - name: build_occup_type_enum + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + mech_struc_enum: + name: mech_struc_enum from_schema: http://w3id.org/mixs/terms permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - drawings_enum: - name: drawings_enum + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + surf_material_enum: + name: surf_material_enum from_schema: http://w3id.org/mixs/terms permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - substructure_type_enum: - name: substructure_type_enum + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass + metal: + text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + door_cond_enum: + name: door_cond_enum from_schema: http://w3id.org/mixs/terms permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + biotic_relationship_enum: + name: biotic_relationship_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + door_move_enum: + name: door_move_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + indoor_space_enum: + name: indoor_space_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator indoor_surf_enum: name: indoor_surf_enum from_schema: http://w3id.org/mixs/terms @@ -1084,76 +1384,126 @@ enums: text: window wall: text: wall - door_loc_enum: - name: door_loc_enum + ceil_texture_enum: + name: ceil_texture_enum from_schema: http://w3id.org/mixs/terms permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - samp_md_enum: - name: samp_md_enum + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + biol_stat_enum: + name: biol_stat_enum from_schema: http://w3id.org/mixs/terms permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - biotic_relationship_enum: - name: biotic_relationship_enum + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_cond_enum: + name: window_cond_enum from_schema: http://w3id.org/mixs/terms permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - surf_air_cont_enum: - name: surf_air_cont_enum + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + hc_produced_enum: + name: hc_produced_enum from_schema: http://w3id.org/mixs/terms permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - samp_floor_enum: - name: samp_floor_enum + Oil: + text: Oil + Gas-Condensate: + text: Gas-Condensate + Gas: + text: Gas + Bitumen: + text: Bitumen + Coalbed Methane: + text: Coalbed Methane + other: + text: other + room_connected_enum: + name: room_connected_enum from_schema: http://w3id.org/mixs/terms permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell + door_type_metal_enum: + name: door_type_metal_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate door_type_wood_enum: name: door_type_wood_enum from_schema: http://w3id.org/mixs/terms @@ -1178,600 +1528,156 @@ enums: text: louvered wire gauged: text: wire gauged - door_direct_enum: - name: door_direct_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - door_cond_enum: - name: door_cond_enum + drainage_class_enum: + name: drainage_class_enum from_schema: http://w3id.org/mixs/terms permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - soil_horizon_enum: - name: soil_horizon_enum + very poorly: + text: very poorly + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + moderately well: + text: moderately well + well: + text: well + excessively drained: + text: excessively drained + rel_to_oxygen_enum: + name: rel_to_oxygen_enum from_schema: http://w3id.org/mixs/terms permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - growth_habit_enum: - name: growth_habit_enum + aerobe: + text: aerobe + anaerobe: + text: anaerobe + facultative: + text: facultative + microaerophilic: + text: microaerophilic + microanaerobe: + text: microanaerobe + obligate aerobe: + text: obligate aerobe + obligate anaerobe: + text: obligate anaerobe + host_sex_enum: + name: host_sex_enum from_schema: http://w3id.org/mixs/terms permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate - hc_produced_enum: - name: hc_produced_enum + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + fao_class_enum: + name: fao_class_enum from_schema: http://w3id.org/mixs/terms permissible_values: - Oil: - text: Oil - Gas-Condensate: - text: Gas-Condensate - Gas: - text: Gas - Bitumen: - text: Bitumen - Coalbed Methane: - text: Coalbed Methane - other: - text: other - train_stop_loc_enum: - name: train_stop_loc_enum + Acrisols: + text: Acrisols + Andosols: + text: Andosols + Arenosols: + text: Arenosols + Cambisols: + text: Cambisols + Chernozems: + text: Chernozems + Ferralsols: + text: Ferralsols + Fluvisols: + text: Fluvisols + Gleysols: + text: Gleysols + Greyzems: + text: Greyzems + Gypsisols: + text: Gypsisols + Histosols: + text: Histosols + Kastanozems: + text: Kastanozems + Lithosols: + text: Lithosols + Luvisols: + text: Luvisols + Nitosols: + text: Nitosols + Phaeozems: + text: Phaeozems + Planosols: + text: Planosols + Podzols: + text: Podzols + Podzoluvisols: + text: Podzoluvisols + Rankers: + text: Rankers + Regosols: + text: Regosols + Rendzinas: + text: Rendzinas + Solonchaks: + text: Solonchaks + Solonetz: + text: Solonetz + Vertisols: + text: Vertisols + Yermosols: + text: Yermosols + specific_enum: + name: specific_enum from_schema: http://w3id.org/mixs/terms permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - tidal_stage_enum: - name: tidal_stage_enum + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + photos: + text: photos + plant_growth_med_enum: + name: plant_growth_med_enum from_schema: http://w3id.org/mixs/terms permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - samp_weather_enum: - name: samp_weather_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - clear sky: - text: clear sky - cloudy: - text: cloudy - foggy: - text: foggy - hail: - text: hail - rain: - text: rain - snow: - text: snow - sleet: - text: sleet - sunny: - text: sunny - windy: - text: windy - floor_water_mold_enum: - name: floor_water_mold_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - train_stat_loc_enum: - name: train_stat_loc_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside - indoor_space_enum: - name: indoor_space_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator - int_wall_cond_enum: - name: int_wall_cond_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - building_setting_enum: - name: building_setting_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - fao_class_enum: - name: fao_class_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - Acrisols: - text: Acrisols - Andosols: - text: Andosols - Arenosols: - text: Arenosols - Cambisols: - text: Cambisols - Chernozems: - text: Chernozems - Ferralsols: - text: Ferralsols - Fluvisols: - text: Fluvisols - Gleysols: - text: Gleysols - Greyzems: - text: Greyzems - Gypsisols: - text: Gypsisols - Histosols: - text: Histosols - Kastanozems: - text: Kastanozems - Lithosols: - text: Lithosols - Luvisols: - text: Luvisols - Nitosols: - text: Nitosols - Phaeozems: - text: Phaeozems - Planosols: - text: Planosols - Podzols: - text: Podzols - Podzoluvisols: - text: Podzoluvisols - Rankers: - text: Rankers - Regosols: - text: Regosols - Rendzinas: - text: Rendzinas - Solonchaks: - text: Solonchaks - Solonetz: - text: Solonetz - Vertisols: - text: Vertisols - Yermosols: - text: Yermosols - quad_pos_enum: - name: quad_pos_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - door_mat_enum: - name: door_mat_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - aluminum: - text: aluminum - cellular PVC: - text: cellular PVC - engineered plastic: - text: engineered plastic - fiberboard: - text: fiberboard - fiberglass: - text: fiberglass - metal: - text: metal - thermoplastic alloy: - text: thermoplastic alloy - vinyl: - text: vinyl - wood: - text: wood - wood/plastic composite: - text: wood/plastic composite - wall_surf_treatment_enum: - name: wall_surf_treatment_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - painted: - text: painted - wall paper: - text: wall paper - no treatment: - text: no treatment - paneling: - text: paneling - stucco: - text: stucco - fabric: - text: fabric - sediment_type_enum: - name: sediment_type_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - biogenous: - text: biogenous - cosmogenous: - text: cosmogenous - hydrogenous: - text: hydrogenous - lithogenous: - text: lithogenous - sr_dep_env_enum: - name: sr_dep_env_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - window_cond_enum: - name: window_cond_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - room_loc_enum: - name: room_loc_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - handidness_enum: - name: handidness_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - heat_deliv_loc_enum: - name: heat_deliv_loc_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - samp_collect_point_enum: - name: samp_collect_point_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank - other: - text: other - depos_env_enum: - name: depos_env_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - wall_texture_enum: - name: wall_texture_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - ? '' - : text: '' - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - ext_wall_orient_enum: - name: ext_wall_orient_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - water_feat_type_enum: - name: water_feat_type_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - floor_struc_enum: - name: floor_struc_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed - concrete: - text: concrete - window_vert_pos_enum: - name: window_vert_pos_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - specific_enum: - name: specific_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - photos: - text: photos - lithology_enum: - name: lithology_enum + other artificial liquid medium: + text: other artificial liquid medium + other artificial solid medium: + text: other artificial solid medium + peat moss: + text: peat moss + perlite: + text: perlite + pumice: + text: pumice + sand: + text: sand + soil: + text: soil + vermiculite: + text: vermiculite + water: + text: water + oxy_stat_samp_enum: + name: oxy_stat_samp_enum from_schema: http://w3id.org/mixs/terms permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + aerobic: + text: aerobic + anaerobic: + text: anaerobic other: text: other - rel_to_oxygen_enum: - name: rel_to_oxygen_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - aerobe: - text: aerobe - anaerobe: - text: anaerobe - facultative: - text: facultative - microaerophilic: - text: microaerophilic - microanaerobe: - text: microanaerobe - obligate aerobe: - text: obligate aerobe - obligate anaerobe: - text: obligate anaerobe window_loc_enum: name: window_loc_enum from_schema: http://w3id.org/mixs/terms @@ -1784,6 +1690,20 @@ enums: text: east west: text: west + shading_device_cond_enum: + name: shading_device_cond_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear organism_count_enum: name: organism_count_enum from_schema: http://w3id.org/mixs/terms @@ -1794,16 +1714,88 @@ enums: text: MPN other: text: other - window_type_enum: - name: window_type_enum + build_docs_enum: + name: build_docs_enum from_schema: http://w3id.org/mixs/terms permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + samp_weather_enum: + name: samp_weather_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + clear sky: + text: clear sky + cloudy: + text: cloudy + foggy: + text: foggy + hail: + text: hail + rain: + text: rain + snow: + text: snow + sleet: + text: sleet + sunny: + text: sunny + windy: + text: windy + ext_window_orient_enum: + name: ext_window_orient_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + furniture_enum: + name: furniture_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks gender_restroom_enum: name: gender_restroom_enum from_schema: http://w3id.org/mixs/terms @@ -1820,174 +1812,182 @@ enums: text: male and female unisex: text: unisex - occup_document_enum: - name: occup_document_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - automated count: - text: automated count - estimate: - text: estimate - manual count: - text: manual count - videos: - text: videos - sr_geol_age_enum: - name: sr_geol_age_enum - from_schema: http://w3id.org/mixs/terms - permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - wall_finish_mat_enum: - name: wall_finish_mat_enum + build_occup_type_enum: + name: build_occup_type_enum from_schema: http://w3id.org/mixs/terms permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: http://w3id.org/mixs/terms + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard metal: text: metal - masonry: - text: masonry - arch_struc_enum: - name: arch_struc_enum + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: http://w3id.org/mixs/terms permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - light_type_enum: - name: light_type_enum + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + door_mat_enum: + name: door_mat_enum from_schema: http://w3id.org/mixs/terms permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - door_type_metal_enum: - name: door_type_metal_enum + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard + fiberglass: + text: fiberglass + metal: + text: metal + thermoplastic alloy: + text: thermoplastic alloy + vinyl: + text: vinyl + wood: + text: wood + wood/plastic composite: + text: wood/plastic composite + ceil_type_enum: + name: ceil_type_enum from_schema: http://w3id.org/mixs/terms permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate - ceil_texture_enum: - name: ceil_texture_enum + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + heat_deliv_loc_enum: + name: heat_deliv_loc_enum from_schema: http://w3id.org/mixs/terms permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - rel_samp_loc_enum: - name: rel_samp_loc_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + floor_finish_mat_enum: + name: floor_finish_mat_enum from_schema: http://w3id.org/mixs/terms permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - door_comp_type_enum: - name: door_comp_type_enum + tile: + text: tile + wood strip or parquet: + text: wood strip or parquet + carpet: + text: carpet + rug: + text: rug + laminate wood: + text: laminate wood + lineoleum: + text: lineoleum + vinyl composition tile: + text: vinyl composition tile + sheet vinyl: + text: sheet vinyl + stone: + text: stone + bamboo: + text: bamboo + cork: + text: cork + terrazo: + text: terrazo + concrete: + text: concrete + none: + text: none + sealed: + text: sealed + clear finish: + text: clear finish + paint: + text: paint + none or unfinished: + text: none or unfinished + samp_subtype_enum: + name: samp_subtype_enum from_schema: http://w3id.org/mixs/terms permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable + other: + text: other slots: abs_air_humidity: name: abs_air_humidity @@ -12990,45 +12990,45 @@ slots: slot_uri: MIXS:0000156 multivalued: false range: quantity value - has numeric value: - name: has numeric value + has raw value: + name: has raw value from_schema: http://w3id.org/mixs/ranges + string_serialization: '{has numeric value} {has unit}' owner: quantity value - range: double - core field: - name: core field - description: basic fields + investigation field: + name: investigation field + description: field describing aspect of the investigation/study to which the sample + belongs from_schema: http://w3id.org/mixs/terms abstract: true + has unit: + name: has unit + description: Example "m" + from_schema: http://w3id.org/mixs/ranges + owner: quantity value sequencing field: name: sequencing field from_schema: http://w3id.org/mixs/terms abstract: true + core field: + name: core field + description: basic fields + from_schema: http://w3id.org/mixs/terms + abstract: true + has numeric value: + name: has numeric value + from_schema: http://w3id.org/mixs/ranges + owner: quantity value + range: double environment field: name: environment field description: field describing environmental aspect of a sample from_schema: http://w3id.org/mixs/terms abstract: true - has raw value: - name: has raw value - from_schema: http://w3id.org/mixs/ranges - string_serialization: '{has numeric value} {has unit}' - owner: quantity value - has unit: - name: has unit - description: Example "m" - from_schema: http://w3id.org/mixs/ranges - owner: quantity value nucleic acid sequence source field: name: nucleic acid sequence source field from_schema: http://w3id.org/mixs/terms abstract: true - investigation field: - name: investigation field - description: field describing aspect of the investigation/study to which the sample - belongs - from_schema: http://w3id.org/mixs/terms - abstract: true classes: placeholder_class: name: placeholder_class diff --git a/assets/mixs_regen/slots_associated_with_biosample.tsv b/assets/mixs_regen/slots_associated_with_biosample.tsv index 87b7bf83ff..9d5ce4d89f 100644 --- a/assets/mixs_regen/slots_associated_with_biosample.tsv +++ b/assets/mixs_regen/slots_associated_with_biosample.tsv @@ -1,7 +1,7 @@ abs_air_humidity add_date -additional_info add_recov_method +additional_info address adj_room aero_struc @@ -10,11 +10,11 @@ air_PM_concen air_temp air_temp_regm air_temp_regm +al_sat +al_sat_meth alkalinity alkalinity_method alkyl_diethers -al_sat -al_sat_meth alt alternative_identifiers aminopept_act @@ -58,8 +58,8 @@ blood_press_diast blood_press_syst bromide build_docs -building_setting build_occup_type +building_setting built_struc_age built_struc_set built_struc_type @@ -78,8 +78,8 @@ ceil_water_mold chem_administration chem_mutagen chem_oxygen_dem -chem_treatment chem_treat_method +chem_treatment chimera_check chloride chlorophyll @@ -119,10 +119,10 @@ dna_absorb1 dna_absorb2 dna_collect_site dna_concentration -dna_container_id dna_cont_type dna_cont_well dna_cont_well +dna_container_id dna_dnase dna_isolate_meth dna_organisms @@ -133,8 +133,8 @@ dna_sample_name dna_seq_project dna_seq_project_name dna_seq_project_pi -dnase_rna dna_volume +dnase_rna door_comp_type door_cond door_direct @@ -164,21 +164,21 @@ embargoed emsl_biosample_identifiers emulsions env_broad_scale -environment field env_local_scale env_medium env_package +environment field escalator ethylbenzene exp_duct +exp_pipe experimental_factor experimental_factor experimental_factor_other -exp_pipe ext_door -extreme_event ext_wall_orient ext_window_orient +extreme_event fao_class fertilizer_regm field @@ -282,10 +282,10 @@ iw_bt_date_well iwf last_clean lat_lon -lbceq -lbceq lbc_thirty lbc_thirty +lbceq +lbceq light_intensity light_regm light_regm @@ -303,15 +303,15 @@ manganese max_occup mean_frict_vel mean_peak_frict_vel -mechanical_damage mech_struc +mechanical_damage methane -microbial_biomass -microbial_biomass_c -microbial_biomass_n micro_biomass_c_meth micro_biomass_meth micro_biomass_n_meth +microbial_biomass +microbial_biomass_c +microbial_biomass_n mineral_nutr_regm misc_param mod_date @@ -336,21 +336,21 @@ number_resident occup_density_samp occup_document occup_samp -organism_count org_carb org_count_qpcr_info org_matter org_nitro org_nitro_method org_particles +organism_count other_treatment owc_tvdss -oxygen oxy_stat_samp -particle_class +oxygen part_of part_org_carb part_org_nitro +particle_class pcr_cond pcr_primers permeability @@ -358,13 +358,13 @@ perturbation pesticide_regm petroleum_hydrocarb ph -phaeopigments ph_meth +ph_regm +phaeopigments phosphate phosphate phosplipid_fatt_acid photon_flux -ph_regm plant_growth_med plant_product plant_sex @@ -374,11 +374,11 @@ pool_dna_extracts porosity potassium pour_point +pre_treatment pres_animal_insect pressure -pre_treatment -previous_land_use prev_land_use_meth +previous_land_use primary_prod primary_treatment prod_rate @@ -404,9 +404,9 @@ rna_absorb1 rna_absorb2 rna_collect_site rna_concentration -rna_container_id rna_cont_type rna_cont_well +rna_container_id rna_isolate_meth rna_organisms rna_project_contact @@ -454,10 +454,6 @@ samp_collec_method samp_collect_point samp_dis_stage samp_floor -sample_collection_site -sample_link -sample_shipped -sample_type samp_loc_corr_rate samp_mat_process samp_md @@ -480,6 +476,10 @@ samp_type samp_vol_we_dna_ext samp_weather samp_well_name +sample_collection_site +sample_link +sample_shipped +sample_type saturates_pc season season_environment @@ -561,10 +561,10 @@ tot_diss_nitro tot_inorg_nitro tot_iron tot_nitro -tot_nitro_content tot_nitro_cont_meth -tot_org_carb +tot_nitro_content tot_org_c_meth +tot_org_carb tot_part_carb tot_phosp tot_phosphate @@ -575,15 +575,15 @@ train_stop_loc turbidity tvdss_of_hcr_press tvdss_of_hcr_temp +typ_occup_density type type -typ_occup_density ventilation_rate ventilation_type vfa vfa_fw -viscosity vis_media +viscosity volatile_org_comp wall_area wall_const_type @@ -595,19 +595,20 @@ wall_texture wall_thermal_mass wall_water_mold wastewater_type -water_content water_cont_soil_meth +water_content water_current water_cut water_feat_size water_feat_type -watering_regm -watering_regm water_prod_rate water_temp_regm +watering_regm +watering_regm weekday win wind_direction +wind_speed window_cond window_cover window_horiz_pos @@ -619,7 +620,6 @@ window_status window_type window_vert_pos window_water_mold -wind_speed xylene zinc zinc diff --git a/assets/mixs_regen/slots_associated_with_biosample_omics_processing.tsv b/assets/mixs_regen/slots_associated_with_biosample_omics_processing.tsv index 107b10c4c8..5349b14328 100644 --- a/assets/mixs_regen/slots_associated_with_biosample_omics_processing.tsv +++ b/assets/mixs_regen/slots_associated_with_biosample_omics_processing.tsv @@ -1,7 +1,7 @@ abs_air_humidity add_date -additional_info add_recov_method +additional_info address adj_room aero_struc @@ -10,11 +10,11 @@ air_PM_concen air_temp air_temp_regm air_temp_regm +al_sat +al_sat_meth alkalinity alkalinity_method alkyl_diethers -al_sat -al_sat_meth alt alternative_identifiers aminopept_act @@ -58,8 +58,8 @@ blood_press_diast blood_press_syst bromide build_docs -building_setting build_occup_type +building_setting built_struc_age built_struc_set built_struc_type @@ -78,8 +78,8 @@ ceil_water_mold chem_administration chem_mutagen chem_oxygen_dem -chem_treatment chem_treat_method +chem_treatment chimera_check chloride chlorophyll @@ -119,10 +119,10 @@ dna_absorb1 dna_absorb2 dna_collect_site dna_concentration -dna_container_id dna_cont_type dna_cont_well dna_cont_well +dna_container_id dna_dnase dna_isolate_meth dna_organisms @@ -133,8 +133,8 @@ dna_sample_name dna_seq_project dna_seq_project_name dna_seq_project_pi -dnase_rna dna_volume +dnase_rna door_comp_type door_cond door_direct @@ -164,21 +164,21 @@ embargoed emsl_biosample_identifiers emulsions env_broad_scale -environment field env_local_scale env_medium env_package +environment field escalator ethylbenzene exp_duct +exp_pipe experimental_factor experimental_factor experimental_factor_other -exp_pipe ext_door -extreme_event ext_wall_orient ext_window_orient +extreme_event fao_class fertilizer_regm field @@ -282,10 +282,10 @@ iw_bt_date_well iwf last_clean lat_lon -lbceq -lbceq lbc_thirty lbc_thirty +lbceq +lbceq light_intensity light_regm light_regm @@ -303,15 +303,15 @@ manganese max_occup mean_frict_vel mean_peak_frict_vel -mechanical_damage mech_struc +mechanical_damage methane -microbial_biomass -microbial_biomass_c -microbial_biomass_n micro_biomass_c_meth micro_biomass_meth micro_biomass_n_meth +microbial_biomass +microbial_biomass_c +microbial_biomass_n mineral_nutr_regm misc_param mod_date @@ -336,21 +336,21 @@ number_resident occup_density_samp occup_document occup_samp -organism_count org_carb org_count_qpcr_info org_matter org_nitro org_nitro_method org_particles +organism_count other_treatment owc_tvdss -oxygen oxy_stat_samp -particle_class +oxygen part_of part_org_carb part_org_nitro +particle_class pcr_cond pcr_primers permeability @@ -358,13 +358,13 @@ perturbation pesticide_regm petroleum_hydrocarb ph -phaeopigments ph_meth +ph_regm +phaeopigments phosphate phosphate phosplipid_fatt_acid photon_flux -ph_regm plant_growth_med plant_product plant_sex @@ -374,11 +374,11 @@ pool_dna_extracts porosity potassium pour_point +pre_treatment pres_animal_insect pressure -pre_treatment -previous_land_use prev_land_use_meth +previous_land_use primary_prod primary_treatment prod_rate @@ -404,9 +404,9 @@ rna_absorb1 rna_absorb2 rna_collect_site rna_concentration -rna_container_id rna_cont_type rna_cont_well +rna_container_id rna_isolate_meth rna_organisms rna_project_contact @@ -454,10 +454,6 @@ samp_collec_method samp_collect_point samp_dis_stage samp_floor -sample_collection_site -sample_link -sample_shipped -sample_type samp_loc_corr_rate samp_mat_process samp_md @@ -480,6 +476,10 @@ samp_type samp_vol_we_dna_ext samp_weather samp_well_name +sample_collection_site +sample_link +sample_shipped +sample_type saturates_pc season season_environment @@ -561,10 +561,10 @@ tot_diss_nitro tot_inorg_nitro tot_iron tot_nitro -tot_nitro_content tot_nitro_cont_meth -tot_org_carb +tot_nitro_content tot_org_c_meth +tot_org_carb tot_part_carb tot_phosp tot_phosphate @@ -575,15 +575,15 @@ train_stop_loc turbidity tvdss_of_hcr_press tvdss_of_hcr_temp +typ_occup_density type type -typ_occup_density ventilation_rate ventilation_type vfa vfa_fw -viscosity vis_media +viscosity volatile_org_comp wall_area wall_const_type @@ -595,19 +595,20 @@ wall_texture wall_thermal_mass wall_water_mold wastewater_type -water_content water_cont_soil_meth +water_content water_current water_cut water_feat_size water_feat_type -watering_regm -watering_regm water_prod_rate water_temp_regm +watering_regm +watering_regm weekday win wind_direction +wind_speed window_cond window_cover window_horiz_pos @@ -619,7 +620,6 @@ window_status window_type window_vert_pos window_water_mold -wind_speed xylene zinc zinc diff --git a/nmdc_schema/nmdc.py b/nmdc_schema/nmdc.py index 1a11c1b300..25ab4e40a2 100644 --- a/nmdc_schema/nmdc.py +++ b/nmdc_schema/nmdc.py @@ -1,5 +1,5 @@ # Auto generated from nmdc.yaml by pythongen.py version: 0.9.0 -# Generation date: 2023-03-02T23:48:33 +# Generation date: 2023-03-05T13:56:38 # Schema: NMDC # # id: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -46,9 +46,7 @@ EGGNOG = CurieNamespace('EGGNOG', 'http://identifiers.org/eggnog/') FBCV = CurieNamespace('FBcv', 'http://purl.obolibrary.org/obo/FBcv_') GO = CurieNamespace('GO', 'http://purl.obolibrary.org/obo/GO_') -GOLD = CurieNamespace('GOLD', 'http://identifiers.org/gold/') HMDB = CurieNamespace('HMDB', 'http://identifiers.org/hmdb/') -IMG_TAXON = CurieNamespace('IMG_TAXON', 'http://identifiers.org/img.taxon/') ISA = CurieNamespace('ISA', 'https://unknown.to.linter.org/') KEGG_COMPOUND = CurieNamespace('KEGG_COMPOUND', 'http://identifiers.org/kegg.compound/') KEGG_ORTHOLOGY = CurieNamespace('KEGG_ORTHOLOGY', 'http://identifiers.org/kegg.orthology/') @@ -56,7 +54,6 @@ KEGG_PATHWAY = CurieNamespace('KEGG_PATHWAY', 'http://identifiers.org/kegg.pathway/') MESH = CurieNamespace('MESH', 'http://identifiers.org/mesh/') MIXS = CurieNamespace('MIXS', 'https://w3id.org/mixs/') -MS = CurieNamespace('MS', 'http://purl.obolibrary.org/obo/MS_') METACYC = CurieNamespace('MetaCyc', 'https://identifiers.org/metacyc.reaction/') METANETX = CurieNamespace('MetaNetX', 'https://unknown.to.linter.org/') NCIT = CurieNamespace('NCIT', 'http://purl.obolibrary.org/obo/NCIT_') @@ -76,14 +73,11 @@ BARE = CurieNamespace('bare', 'https://unknown.to.linter.org/') BIOLINK = CurieNamespace('biolink', 'https://w3id.org/biolink/vocab/') DCTERMS = CurieNamespace('dcterms', 'http://purl.org/dc/terms/') -EMSL = CurieNamespace('emsl', 'https://unknown.to.linter.org/') GTPO = CurieNamespace('gtpo', 'https://unknown.to.linter.org/') -IGSN = CurieNamespace('igsn', 'https://app.geosamples.org/sample/igsn/') -INSDC_SRS = CurieNamespace('insdc_srs', 'https://unknown.to.linter.org/') JGI = CurieNamespace('jgi', 'https://unknown.to.linter.org/') LINKML = CurieNamespace('linkml', 'https://w3id.org/linkml/') -MGNIFY = CurieNamespace('mgnify', 'https://unknown.to.linter.org/') NMDC = CurieNamespace('nmdc', 'https://w3id.org/nmdc/') +NMDC_YAML = CurieNamespace('nmdc_yaml', 'https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/') PROV = CurieNamespace('prov', 'http://www.w3.org/ns/prov#') QUD = CurieNamespace('qud', 'http://qudt.org/1.1/schema/qudt#') RDF = CurieNamespace('rdf', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#') @@ -5774,24 +5768,118 @@ class ProcessingInstitutionEnum(EnumDefinitionImpl): name="ProcessingInstitutionEnum", ) -class HeatCoolTypeEnum(EnumDefinitionImpl): +class OccupDocumentEnum(EnumDefinitionImpl): + + estimate = PermissibleValue(text="estimate") + videos = PermissibleValue(text="videos") _defn = EnumDefinition( - name="HeatCoolTypeEnum", + name="OccupDocumentEnum", ) @classmethod def _addvals(cls): - setattr(cls, "radiant system", - PermissibleValue(text="radiant system") ) - setattr(cls, "heat pump", - PermissibleValue(text="heat pump") ) - setattr(cls, "forced air system", - PermissibleValue(text="forced air system") ) - setattr(cls, "steam forced heat", - PermissibleValue(text="steam forced heat") ) - setattr(cls, "wood stove", - PermissibleValue(text="wood stove") ) + setattr(cls, "automated count", + PermissibleValue(text="automated count") ) + setattr(cls, "manual count", + PermissibleValue(text="manual count") ) + +class SedimentTypeEnum(EnumDefinitionImpl): + + biogenous = PermissibleValue(text="biogenous") + cosmogenous = PermissibleValue(text="cosmogenous") + hydrogenous = PermissibleValue(text="hydrogenous") + lithogenous = PermissibleValue(text="lithogenous") + + _defn = EnumDefinition( + name="SedimentTypeEnum", + ) + +class ExtWallOrientEnum(EnumDefinitionImpl): + + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") + northeast = PermissibleValue(text="northeast") + southeast = PermissibleValue(text="southeast") + southwest = PermissibleValue(text="southwest") + northwest = PermissibleValue(text="northwest") + + _defn = EnumDefinition( + name="ExtWallOrientEnum", + ) + +class TrainLineEnum(EnumDefinitionImpl): + + red = PermissibleValue(text="red") + green = PermissibleValue(text="green") + orange = PermissibleValue(text="orange") + + _defn = EnumDefinition( + name="TrainLineEnum", + ) + +class BuildingSettingEnum(EnumDefinitionImpl): + + urban = PermissibleValue(text="urban") + suburban = PermissibleValue(text="suburban") + exurban = PermissibleValue(text="exurban") + rural = PermissibleValue(text="rural") + + _defn = EnumDefinition( + name="BuildingSettingEnum", + ) + +class RoomSampPosEnum(EnumDefinitionImpl): + + center = PermissibleValue(text="center") + + _defn = EnumDefinition( + name="RoomSampPosEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "north corner", + PermissibleValue(text="north corner") ) + setattr(cls, "south corner", + PermissibleValue(text="south corner") ) + setattr(cls, "west corner", + PermissibleValue(text="west corner") ) + setattr(cls, "east corner", + PermissibleValue(text="east corner") ) + setattr(cls, "northeast corner", + PermissibleValue(text="northeast corner") ) + setattr(cls, "northwest corner", + PermissibleValue(text="northwest corner") ) + setattr(cls, "southeast corner", + PermissibleValue(text="southeast corner") ) + setattr(cls, "southwest corner", + PermissibleValue(text="southwest corner") ) + +class WallLocEnum(EnumDefinitionImpl): + + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") + + _defn = EnumDefinition( + name="WallLocEnum", + ) + +class SampMdEnum(EnumDefinitionImpl): + + DF = PermissibleValue(text="DF") + RT = PermissibleValue(text="RT") + KB = PermissibleValue(text="KB") + MSL = PermissibleValue(text="MSL") + other = PermissibleValue(text="other") + + _defn = EnumDefinition( + name="SampMdEnum", + ) class CurLandUseEnum(EnumDefinitionImpl): @@ -5864,22 +5952,62 @@ def _addvals(cls): setattr(cls, "crop trees (nuts,fruit,christmas trees,nursery trees)", PermissibleValue(text="crop trees (nuts,fruit,christmas trees,nursery trees)") ) -class MechStrucEnum(EnumDefinitionImpl): +class TrainStatLocEnum(EnumDefinitionImpl): - subway = PermissibleValue(text="subway") - coach = PermissibleValue(text="coach") - carriage = PermissibleValue(text="carriage") - elevator = PermissibleValue(text="elevator") - escalator = PermissibleValue(text="escalator") - boat = PermissibleValue(text="boat") - train = PermissibleValue(text="train") - car = PermissibleValue(text="car") - bus = PermissibleValue(text="bus") + riverside = PermissibleValue(text="riverside") _defn = EnumDefinition( - name="MechStrucEnum", + name="TrainStatLocEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "south station above ground", + PermissibleValue(text="south station above ground") ) + setattr(cls, "south station underground", + PermissibleValue(text="south station underground") ) + setattr(cls, "south station amtrak", + PermissibleValue(text="south station amtrak") ) + setattr(cls, "forest hills", + PermissibleValue(text="forest hills") ) + +class DoorDirectEnum(EnumDefinitionImpl): + + inward = PermissibleValue(text="inward") + outward = PermissibleValue(text="outward") + sideways = PermissibleValue(text="sideways") + + _defn = EnumDefinition( + name="DoorDirectEnum", + ) + +class FloorWaterMoldEnum(EnumDefinitionImpl): + + condensation = PermissibleValue(text="condensation") + + _defn = EnumDefinition( + name="FloorWaterMoldEnum", ) + @classmethod + def _addvals(cls): + setattr(cls, "mold odor", + PermissibleValue(text="mold odor") ) + setattr(cls, "wet floor", + PermissibleValue(text="wet floor") ) + setattr(cls, "water stains", + PermissibleValue(text="water stains") ) + setattr(cls, "wall discoloration", + PermissibleValue(text="wall discoloration") ) + setattr(cls, "floor discoloration", + PermissibleValue(text="floor discoloration") ) + setattr(cls, "ceiling discoloration", + PermissibleValue(text="ceiling discoloration") ) + setattr(cls, "peeling paint or wallpaper", + PermissibleValue(text="peeling paint or wallpaper") ) + setattr(cls, "bulging walls", + PermissibleValue(text="bulging walls") ) + class HcrGeolAgeEnum(EnumDefinitionImpl): Archean = PermissibleValue(text="Archean") @@ -5905,206 +6033,169 @@ class HcrGeolAgeEnum(EnumDefinitionImpl): name="HcrGeolAgeEnum", ) -class CeilFinishMatEnum(EnumDefinitionImpl): +class SurfAirContEnum(EnumDefinitionImpl): - drywall = PermissibleValue(text="drywall") - tiles = PermissibleValue(text="tiles") - PVC = PermissibleValue(text="PVC") - plasterboard = PermissibleValue(text="plasterboard") - metal = PermissibleValue(text="metal") - fiberglass = PermissibleValue(text="fiberglass") - stucco = PermissibleValue(text="stucco") - wood = PermissibleValue(text="wood") + dust = PermissibleValue(text="dust") + radon = PermissibleValue(text="radon") + nutrients = PermissibleValue(text="nutrients") + biocides = PermissibleValue(text="biocides") _defn = EnumDefinition( - name="CeilFinishMatEnum", + name="SurfAirContEnum", ) @classmethod def _addvals(cls): - setattr(cls, "mineral fibre", - PermissibleValue(text="mineral fibre") ) - setattr(cls, "mineral wool/calcium silicate", - PermissibleValue(text="mineral wool/calcium silicate") ) + setattr(cls, "organic matter", + PermissibleValue(text="organic matter") ) + setattr(cls, "particulate matter", + PermissibleValue(text="particulate matter") ) + setattr(cls, "volatile organic compounds", + PermissibleValue(text="volatile organic compounds") ) + setattr(cls, "biological contaminants", + PermissibleValue(text="biological contaminants") ) -class HostSexEnum(EnumDefinitionImpl): +class DrawingsEnum(EnumDefinitionImpl): - female = PermissibleValue(text="female") - hermaphrodite = PermissibleValue(text="hermaphrodite") - male = PermissibleValue(text="male") - neuter = PermissibleValue(text="neuter") + operation = PermissibleValue(text="operation") + construction = PermissibleValue(text="construction") + bid = PermissibleValue(text="bid") + design = PermissibleValue(text="design") + diagram = PermissibleValue(text="diagram") + sketch = PermissibleValue(text="sketch") _defn = EnumDefinition( - name="HostSexEnum", + name="DrawingsEnum", ) -class RoomSampPosEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "as built", + PermissibleValue(text="as built") ) + setattr(cls, "building navigation map", + PermissibleValue(text="building navigation map") ) - center = PermissibleValue(text="center") +class DoorLocEnum(EnumDefinitionImpl): + + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") _defn = EnumDefinition( - name="RoomSampPosEnum", + name="DoorLocEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "north corner", - PermissibleValue(text="north corner") ) - setattr(cls, "south corner", - PermissibleValue(text="south corner") ) - setattr(cls, "west corner", - PermissibleValue(text="west corner") ) - setattr(cls, "east corner", - PermissibleValue(text="east corner") ) - setattr(cls, "northeast corner", - PermissibleValue(text="northeast corner") ) - setattr(cls, "northwest corner", - PermissibleValue(text="northwest corner") ) - setattr(cls, "southeast corner", - PermissibleValue(text="southeast corner") ) - setattr(cls, "southwest corner", - PermissibleValue(text="southwest corner") ) - -class BiolStatEnum(EnumDefinitionImpl): +class SrDepEnvEnum(EnumDefinitionImpl): - wild = PermissibleValue(text="wild") - natural = PermissibleValue(text="natural") - hybrid = PermissibleValue(text="hybrid") - mutant = PermissibleValue(text="mutant") + Lacustine = PermissibleValue(text="Lacustine") + Fluvioldeltaic = PermissibleValue(text="Fluvioldeltaic") + Fluviomarine = PermissibleValue(text="Fluviomarine") + Marine = PermissibleValue(text="Marine") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="BiolStatEnum", + name="SrDepEnvEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "semi-natural", - PermissibleValue(text="semi-natural") ) - setattr(cls, "inbred line", - PermissibleValue(text="inbred line") ) - setattr(cls, "breeder's line", - PermissibleValue(text="breeder's line") ) - setattr(cls, "clonal selection", - PermissibleValue(text="clonal selection") ) - -class SeasonUseEnum(EnumDefinitionImpl): +class RoomCondtEnum(EnumDefinitionImpl): - Spring = PermissibleValue(text="Spring") - Summer = PermissibleValue(text="Summer") - Fall = PermissibleValue(text="Fall") - Winter = PermissibleValue(text="Winter") + new = PermissibleValue(text="new") + damaged = PermissibleValue(text="damaged") + rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="SeasonUseEnum", + name="RoomCondtEnum", ) -class ExtWindowOrientEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "visible wear", + PermissibleValue(text="visible wear") ) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair") ) + setattr(cls, "visible signs of mold/mildew", + PermissibleValue(text="visible signs of mold/mildew") ) - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") - northeast = PermissibleValue(text="northeast") - southeast = PermissibleValue(text="southeast") - southwest = PermissibleValue(text="southwest") - northwest = PermissibleValue(text="northwest") +class SampDisStageEnum(EnumDefinitionImpl): + + dissemination = PermissibleValue(text="dissemination") + infection = PermissibleValue(text="infection") + inoculation = PermissibleValue(text="inoculation") + penetration = PermissibleValue(text="penetration") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="ExtWindowOrientEnum", + name="SampDisStageEnum", ) -class FloorFinishMatEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "growth and reproduction", + PermissibleValue(text="growth and reproduction") ) - tile = PermissibleValue(text="tile") - carpet = PermissibleValue(text="carpet") - rug = PermissibleValue(text="rug") - lineoleum = PermissibleValue(text="lineoleum") - stone = PermissibleValue(text="stone") - bamboo = PermissibleValue(text="bamboo") - cork = PermissibleValue(text="cork") - terrazo = PermissibleValue(text="terrazo") - concrete = PermissibleValue(text="concrete") - none = PermissibleValue(text="none") - sealed = PermissibleValue(text="sealed") - paint = PermissibleValue(text="paint") +class QuadPosEnum(EnumDefinitionImpl): _defn = EnumDefinition( - name="FloorFinishMatEnum", + name="QuadPosEnum", ) @classmethod def _addvals(cls): - setattr(cls, "wood strip or parquet", - PermissibleValue(text="wood strip or parquet") ) - setattr(cls, "laminate wood", - PermissibleValue(text="laminate wood") ) - setattr(cls, "vinyl composition tile", - PermissibleValue(text="vinyl composition tile") ) - setattr(cls, "sheet vinyl", - PermissibleValue(text="sheet vinyl") ) - setattr(cls, "clear finish", - PermissibleValue(text="clear finish") ) - setattr(cls, "none or unfinished", - PermissibleValue(text="none or unfinished") ) + setattr(cls, "North side", + PermissibleValue(text="North side") ) + setattr(cls, "West side", + PermissibleValue(text="West side") ) + setattr(cls, "South side", + PermissibleValue(text="South side") ) + setattr(cls, "East side", + PermissibleValue(text="East side") ) -class SampCaptStatusEnum(EnumDefinitionImpl): +class SampFloorEnum(EnumDefinitionImpl): - other = PermissibleValue(text="other") + basement = PermissibleValue(text="basement") + lobby = PermissibleValue(text="lobby") _defn = EnumDefinition( - name="SampCaptStatusEnum", + name="SampFloorEnum", ) @classmethod def _addvals(cls): - setattr(cls, "active surveillance in response to an outbreak", - PermissibleValue(text="active surveillance in response to an outbreak") ) - setattr(cls, "active surveillance not initiated by an outbreak", - PermissibleValue(text="active surveillance not initiated by an outbreak") ) - setattr(cls, "farm sample", - PermissibleValue(text="farm sample") ) - setattr(cls, "market sample", - PermissibleValue(text="market sample") ) + setattr(cls, "1st floor", + PermissibleValue(text="1st floor") ) + setattr(cls, "2nd floor", + PermissibleValue(text="2nd floor") ) -class FilterTypeEnum(EnumDefinitionImpl): +class HandidnessEnum(EnumDefinitionImpl): - HEPA = PermissibleValue(text="HEPA") - electrostatic = PermissibleValue(text="electrostatic") + ambidexterity = PermissibleValue(text="ambidexterity") _defn = EnumDefinition( - name="FilterTypeEnum", + name="HandidnessEnum", ) @classmethod def _addvals(cls): - setattr(cls, "particulate air filter", - PermissibleValue(text="particulate air filter") ) - setattr(cls, "chemical air filter", - PermissibleValue(text="chemical air filter") ) - setattr(cls, "low-MERV pleated media", - PermissibleValue(text="low-MERV pleated media") ) - setattr(cls, "gas-phase or ultraviolet air treatments", - PermissibleValue(text="gas-phase or ultraviolet air treatments") ) + setattr(cls, "left handedness", + PermissibleValue(text="left handedness") ) + setattr(cls, "mixed-handedness", + PermissibleValue(text="mixed-handedness") ) + setattr(cls, "right handedness", + PermissibleValue(text="right handedness") ) -class RoomCondtEnum(EnumDefinitionImpl): +class ProfilePositionEnum(EnumDefinitionImpl): - new = PermissibleValue(text="new") - damaged = PermissibleValue(text="damaged") - rupture = PermissibleValue(text="rupture") + summit = PermissibleValue(text="summit") + shoulder = PermissibleValue(text="shoulder") + backslope = PermissibleValue(text="backslope") + footslope = PermissibleValue(text="footslope") + toeslope = PermissibleValue(text="toeslope") _defn = EnumDefinition( - name="RoomCondtEnum", + name="ProfilePositionEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "visible wear", - PermissibleValue(text="visible wear") ) - setattr(cls, "needs repair", - PermissibleValue(text="needs repair") ) - setattr(cls, "visible signs of mold/mildew", - PermissibleValue(text="visible signs of mold/mildew") ) - class VisMediaEnum(EnumDefinitionImpl): photos = PermissibleValue(text="photos") @@ -6125,57 +6216,48 @@ def _addvals(cls): setattr(cls, "3D scans", PermissibleValue(text="3D scans") ) -class DoorMoveEnum(EnumDefinitionImpl): +class SubstructureTypeEnum(EnumDefinitionImpl): - collapsible = PermissibleValue(text="collapsible") - folding = PermissibleValue(text="folding") - revolving = PermissibleValue(text="revolving") - sliding = PermissibleValue(text="sliding") - swinging = PermissibleValue(text="swinging") + crawlspace = PermissibleValue(text="crawlspace") + basement = PermissibleValue(text="basement") _defn = EnumDefinition( - name="DoorMoveEnum", + name="SubstructureTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "rolling shutter", - PermissibleValue(text="rolling shutter") ) + setattr(cls, "slab on grade", + PermissibleValue(text="slab on grade") ) -class PlantSexEnum(EnumDefinitionImpl): +class LithologyEnum(EnumDefinitionImpl): - Androdioecious = PermissibleValue(text="Androdioecious") - Androecious = PermissibleValue(text="Androecious") - Androgynous = PermissibleValue(text="Androgynous") - Androgynomonoecious = PermissibleValue(text="Androgynomonoecious") - Andromonoecious = PermissibleValue(text="Andromonoecious") - Bisexual = PermissibleValue(text="Bisexual") - Dichogamous = PermissibleValue(text="Dichogamous") - Diclinous = PermissibleValue(text="Diclinous") - Dioecious = PermissibleValue(text="Dioecious") - Gynodioecious = PermissibleValue(text="Gynodioecious") - Gynoecious = PermissibleValue(text="Gynoecious") - Gynomonoecious = PermissibleValue(text="Gynomonoecious") - Hermaphroditic = PermissibleValue(text="Hermaphroditic") - Imperfect = PermissibleValue(text="Imperfect") - Monoclinous = PermissibleValue(text="Monoclinous") - Monoecious = PermissibleValue(text="Monoecious") - Perfect = PermissibleValue(text="Perfect") - Polygamodioecious = PermissibleValue(text="Polygamodioecious") - Polygamomonoecious = PermissibleValue(text="Polygamomonoecious") - Polygamous = PermissibleValue(text="Polygamous") - Protandrous = PermissibleValue(text="Protandrous") - Protogynous = PermissibleValue(text="Protogynous") - Subandroecious = PermissibleValue(text="Subandroecious") - Subdioecious = PermissibleValue(text="Subdioecious") - Subgynoecious = PermissibleValue(text="Subgynoecious") - Synoecious = PermissibleValue(text="Synoecious") - Trimonoecious = PermissibleValue(text="Trimonoecious") - Trioecious = PermissibleValue(text="Trioecious") - Unisexual = PermissibleValue(text="Unisexual") + Basement = PermissibleValue(text="Basement") + Chalk = PermissibleValue(text="Chalk") + Chert = PermissibleValue(text="Chert") + Coal = PermissibleValue(text="Coal") + Conglomerate = PermissibleValue(text="Conglomerate") + Diatomite = PermissibleValue(text="Diatomite") + Dolomite = PermissibleValue(text="Dolomite") + Limestone = PermissibleValue(text="Limestone") + Sandstone = PermissibleValue(text="Sandstone") + Shale = PermissibleValue(text="Shale") + Siltstone = PermissibleValue(text="Siltstone") + Volcanic = PermissibleValue(text="Volcanic") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="PlantSexEnum", + name="LithologyEnum", + ) + +class ArchStrucEnum(EnumDefinitionImpl): + + building = PermissibleValue(text="building") + shed = PermissibleValue(text="shed") + home = PermissibleValue(text="home") + + _defn = EnumDefinition( + name="ArchStrucEnum", ) class DoorTypeEnum(EnumDefinitionImpl): @@ -6188,280 +6270,303 @@ class DoorTypeEnum(EnumDefinitionImpl): name="DoorTypeEnum", ) -class SurfMaterialEnum(EnumDefinitionImpl): +class SrKerogTypeEnum(EnumDefinitionImpl): - adobe = PermissibleValue(text="adobe") - carpet = PermissibleValue(text="carpet") - concrete = PermissibleValue(text="concrete") - glass = PermissibleValue(text="glass") - metal = PermissibleValue(text="metal") - paint = PermissibleValue(text="paint") - plastic = PermissibleValue(text="plastic") - stone = PermissibleValue(text="stone") - stucco = PermissibleValue(text="stucco") - tile = PermissibleValue(text="tile") - vinyl = PermissibleValue(text="vinyl") - wood = PermissibleValue(text="wood") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="SurfMaterialEnum", + name="SrKerogTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "cinder blocks", - PermissibleValue(text="cinder blocks") ) - setattr(cls, "hay bales", - PermissibleValue(text="hay bales") ) - setattr(cls, "stainless steel", - PermissibleValue(text="stainless steel") ) + setattr(cls, "Type I", + PermissibleValue(text="Type I") ) + setattr(cls, "Type II", + PermissibleValue(text="Type II") ) + setattr(cls, "Type III", + PermissibleValue(text="Type III") ) + setattr(cls, "Type IV", + PermissibleValue(text="Type IV") ) -class TillageEnum(EnumDefinitionImpl): +class CeilCondEnum(EnumDefinitionImpl): - drill = PermissibleValue(text="drill") - chisel = PermissibleValue(text="chisel") - tined = PermissibleValue(text="tined") - mouldboard = PermissibleValue(text="mouldboard") + new = PermissibleValue(text="new") + damaged = PermissibleValue(text="damaged") + rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="TillageEnum", + name="CeilCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "cutting disc", - PermissibleValue(text="cutting disc") ) - setattr(cls, "ridge till", - PermissibleValue(text="ridge till") ) - setattr(cls, "strip tillage", - PermissibleValue(text="strip tillage") ) - setattr(cls, "zonal tillage", - PermissibleValue(text="zonal tillage") ) - setattr(cls, "disc plough", - PermissibleValue(text="disc plough") ) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear") ) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair") ) -class WindowCoverEnum(EnumDefinitionImpl): +class SampCollectPointEnum(EnumDefinitionImpl): - blinds = PermissibleValue(text="blinds") - curtains = PermissibleValue(text="curtains") - none = PermissibleValue(text="none") + well = PermissibleValue(text="well") + wellhead = PermissibleValue(text="wellhead") + separator = PermissibleValue(text="separator") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="WindowCoverEnum", + name="SampCollectPointEnum", ) -class RoomConnectedEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "test well", + PermissibleValue(text="test well") ) + setattr(cls, "drilling rig", + PermissibleValue(text="drilling rig") ) + setattr(cls, "storage tank", + PermissibleValue(text="storage tank") ) - attic = PermissibleValue(text="attic") - bathroom = PermissibleValue(text="bathroom") - closet = PermissibleValue(text="closet") - elevator = PermissibleValue(text="elevator") - hallway = PermissibleValue(text="hallway") - kitchen = PermissibleValue(text="kitchen") - office = PermissibleValue(text="office") - stairwell = PermissibleValue(text="stairwell") +class WindowVertPosEnum(EnumDefinitionImpl): + + bottom = PermissibleValue(text="bottom") + middle = PermissibleValue(text="middle") + top = PermissibleValue(text="top") + low = PermissibleValue(text="low") + high = PermissibleValue(text="high") _defn = EnumDefinition( - name="RoomConnectedEnum", + name="WindowVertPosEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "conference room", - PermissibleValue(text="conference room") ) - setattr(cls, "examining room", - PermissibleValue(text="examining room") ) - setattr(cls, "mail room", - PermissibleValue(text="mail room") ) - -class TrainLineEnum(EnumDefinitionImpl): +class TrainStopLocEnum(EnumDefinitionImpl): - red = PermissibleValue(text="red") - green = PermissibleValue(text="green") - orange = PermissibleValue(text="orange") + end = PermissibleValue(text="end") + mid = PermissibleValue(text="mid") + downtown = PermissibleValue(text="downtown") _defn = EnumDefinition( - name="TrainLineEnum", + name="TrainStopLocEnum", ) -class SampDisStageEnum(EnumDefinitionImpl): +class IntWallCondEnum(EnumDefinitionImpl): - dissemination = PermissibleValue(text="dissemination") - infection = PermissibleValue(text="infection") - inoculation = PermissibleValue(text="inoculation") - penetration = PermissibleValue(text="penetration") - other = PermissibleValue(text="other") + new = PermissibleValue(text="new") + damaged = PermissibleValue(text="damaged") + rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="SampDisStageEnum", + name="IntWallCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "growth and reproduction", - PermissibleValue(text="growth and reproduction") ) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear") ) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair") ) -class ProfilePositionEnum(EnumDefinitionImpl): +class PlantSexEnum(EnumDefinitionImpl): - summit = PermissibleValue(text="summit") - shoulder = PermissibleValue(text="shoulder") - backslope = PermissibleValue(text="backslope") - footslope = PermissibleValue(text="footslope") - toeslope = PermissibleValue(text="toeslope") + Androdioecious = PermissibleValue(text="Androdioecious") + Androecious = PermissibleValue(text="Androecious") + Androgynous = PermissibleValue(text="Androgynous") + Androgynomonoecious = PermissibleValue(text="Androgynomonoecious") + Andromonoecious = PermissibleValue(text="Andromonoecious") + Bisexual = PermissibleValue(text="Bisexual") + Dichogamous = PermissibleValue(text="Dichogamous") + Diclinous = PermissibleValue(text="Diclinous") + Dioecious = PermissibleValue(text="Dioecious") + Gynodioecious = PermissibleValue(text="Gynodioecious") + Gynoecious = PermissibleValue(text="Gynoecious") + Gynomonoecious = PermissibleValue(text="Gynomonoecious") + Hermaphroditic = PermissibleValue(text="Hermaphroditic") + Imperfect = PermissibleValue(text="Imperfect") + Monoclinous = PermissibleValue(text="Monoclinous") + Monoecious = PermissibleValue(text="Monoecious") + Perfect = PermissibleValue(text="Perfect") + Polygamodioecious = PermissibleValue(text="Polygamodioecious") + Polygamomonoecious = PermissibleValue(text="Polygamomonoecious") + Polygamous = PermissibleValue(text="Polygamous") + Protandrous = PermissibleValue(text="Protandrous") + Protogynous = PermissibleValue(text="Protogynous") + Subandroecious = PermissibleValue(text="Subandroecious") + Subdioecious = PermissibleValue(text="Subdioecious") + Subgynoecious = PermissibleValue(text="Subgynoecious") + Synoecious = PermissibleValue(text="Synoecious") + Trimonoecious = PermissibleValue(text="Trimonoecious") + Trioecious = PermissibleValue(text="Trioecious") + Unisexual = PermissibleValue(text="Unisexual") _defn = EnumDefinition( - name="ProfilePositionEnum", + name="PlantSexEnum", ) -class BuildDocsEnum(EnumDefinitionImpl): - - schedule = PermissibleValue(text="schedule") - sections = PermissibleValue(text="sections") - submittals = PermissibleValue(text="submittals") - windows = PermissibleValue(text="windows") +class RelSampLocEnum(EnumDefinitionImpl): _defn = EnumDefinition( - name="BuildDocsEnum", + name="RelSampLocEnum", ) @classmethod def _addvals(cls): - setattr(cls, "building information model", - PermissibleValue(text="building information model") ) - setattr(cls, "commissioning report", - PermissibleValue(text="commissioning report") ) - setattr(cls, "complaint logs", - PermissibleValue(text="complaint logs") ) - setattr(cls, "contract administration", - PermissibleValue(text="contract administration") ) - setattr(cls, "cost estimate", - PermissibleValue(text="cost estimate") ) - setattr(cls, "janitorial schedules or logs", - PermissibleValue(text="janitorial schedules or logs") ) - setattr(cls, "maintenance plans", - PermissibleValue(text="maintenance plans") ) - setattr(cls, "shop drawings", - PermissibleValue(text="shop drawings") ) - setattr(cls, "ventilation system", - PermissibleValue(text="ventilation system") ) - -class SrLithologyEnum(EnumDefinitionImpl): + setattr(cls, "edge of car", + PermissibleValue(text="edge of car") ) + setattr(cls, "center of car", + PermissibleValue(text="center of car") ) + setattr(cls, "under a seat", + PermissibleValue(text="under a seat") ) - Clastic = PermissibleValue(text="Clastic") - Carbonate = PermissibleValue(text="Carbonate") - Coal = PermissibleValue(text="Coal") - Biosilicieous = PermissibleValue(text="Biosilicieous") - other = PermissibleValue(text="other") +class TidalStageEnum(EnumDefinitionImpl): _defn = EnumDefinition( - name="SrLithologyEnum", + name="TidalStageEnum", ) -class WallConstTypeEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "low tide", + PermissibleValue(text="low tide") ) + setattr(cls, "ebb tide", + PermissibleValue(text="ebb tide") ) + setattr(cls, "flood tide", + PermissibleValue(text="flood tide") ) + setattr(cls, "high tide", + PermissibleValue(text="high tide") ) + +class SampCaptStatusEnum(EnumDefinitionImpl): + + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="WallConstTypeEnum", + name="SampCaptStatusEnum", ) @classmethod def _addvals(cls): - setattr(cls, "frame construction", - PermissibleValue(text="frame construction") ) - setattr(cls, "joisted masonry", - PermissibleValue(text="joisted masonry") ) - setattr(cls, "light noncombustible", - PermissibleValue(text="light noncombustible") ) - setattr(cls, "masonry noncombustible", - PermissibleValue(text="masonry noncombustible") ) - setattr(cls, "modified fire resistive", - PermissibleValue(text="modified fire resistive") ) - setattr(cls, "fire resistive", - PermissibleValue(text="fire resistive") ) + setattr(cls, "active surveillance in response to an outbreak", + PermissibleValue(text="active surveillance in response to an outbreak") ) + setattr(cls, "active surveillance not initiated by an outbreak", + PermissibleValue(text="active surveillance not initiated by an outbreak") ) + setattr(cls, "farm sample", + PermissibleValue(text="farm sample") ) + setattr(cls, "market sample", + PermissibleValue(text="market sample") ) -class OxyStatSampEnum(EnumDefinitionImpl): +class SrLithologyEnum(EnumDefinitionImpl): - aerobic = PermissibleValue(text="aerobic") - anaerobic = PermissibleValue(text="anaerobic") + Clastic = PermissibleValue(text="Clastic") + Carbonate = PermissibleValue(text="Carbonate") + Coal = PermissibleValue(text="Coal") + Biosilicieous = PermissibleValue(text="Biosilicieous") other = PermissibleValue(text="other") _defn = EnumDefinition( - name="OxyStatSampEnum", + name="SrLithologyEnum", ) -class PlantGrowthMedEnum(EnumDefinitionImpl): +class DeposEnvEnum(EnumDefinitionImpl): - perlite = PermissibleValue(text="perlite") - pumice = PermissibleValue(text="pumice") - sand = PermissibleValue(text="sand") - soil = PermissibleValue(text="soil") - vermiculite = PermissibleValue(text="vermiculite") - water = PermissibleValue(text="water") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="PlantGrowthMedEnum", + name="DeposEnvEnum", ) @classmethod def _addvals(cls): - setattr(cls, "other artificial liquid medium", - PermissibleValue(text="other artificial liquid medium") ) - setattr(cls, "other artificial solid medium", - PermissibleValue(text="other artificial solid medium") ) - setattr(cls, "peat moss", - PermissibleValue(text="peat moss") ) - -class WeekdayEnum(EnumDefinitionImpl): - - Monday = PermissibleValue(text="Monday") - Tuesday = PermissibleValue(text="Tuesday") - Wednesday = PermissibleValue(text="Wednesday") - Thursday = PermissibleValue(text="Thursday") - Friday = PermissibleValue(text="Friday") - Saturday = PermissibleValue(text="Saturday") - Sunday = PermissibleValue(text="Sunday") - - _defn = EnumDefinition( - name="WeekdayEnum", - ) + setattr(cls, "Continental - Alluvial", + PermissibleValue(text="Continental - Alluvial") ) + setattr(cls, "Continental - Aeolian", + PermissibleValue(text="Continental - Aeolian") ) + setattr(cls, "Continental - Fluvial", + PermissibleValue(text="Continental - Fluvial") ) + setattr(cls, "Continental - Lacustrine", + PermissibleValue(text="Continental - Lacustrine") ) + setattr(cls, "Transitional - Deltaic", + PermissibleValue(text="Transitional - Deltaic") ) + setattr(cls, "Transitional - Tidal", + PermissibleValue(text="Transitional - Tidal") ) + setattr(cls, "Transitional - Lagoonal", + PermissibleValue(text="Transitional - Lagoonal") ) + setattr(cls, "Transitional - Beach", + PermissibleValue(text="Transitional - Beach") ) + setattr(cls, "Transitional - Lake", + PermissibleValue(text="Transitional - Lake") ) + setattr(cls, "Marine - Shallow", + PermissibleValue(text="Marine - Shallow") ) + setattr(cls, "Marine - Deep", + PermissibleValue(text="Marine - Deep") ) + setattr(cls, "Marine - Reef", + PermissibleValue(text="Marine - Reef") ) + setattr(cls, "Other - Evaporite", + PermissibleValue(text="Other - Evaporite") ) + setattr(cls, "Other - Glacial", + PermissibleValue(text="Other - Glacial") ) + setattr(cls, "Other - Volcanic", + PermissibleValue(text="Other - Volcanic") ) -class WindowMatEnum(EnumDefinitionImpl): +class SrGeolAgeEnum(EnumDefinitionImpl): - clad = PermissibleValue(text="clad") - fiberglass = PermissibleValue(text="fiberglass") - metal = PermissibleValue(text="metal") - vinyl = PermissibleValue(text="vinyl") - wood = PermissibleValue(text="wood") + Archean = PermissibleValue(text="Archean") + Cambrian = PermissibleValue(text="Cambrian") + Carboniferous = PermissibleValue(text="Carboniferous") + Cenozoic = PermissibleValue(text="Cenozoic") + Cretaceous = PermissibleValue(text="Cretaceous") + Devonian = PermissibleValue(text="Devonian") + Jurassic = PermissibleValue(text="Jurassic") + Mesozoic = PermissibleValue(text="Mesozoic") + Neogene = PermissibleValue(text="Neogene") + Ordovician = PermissibleValue(text="Ordovician") + Paleogene = PermissibleValue(text="Paleogene") + Paleozoic = PermissibleValue(text="Paleozoic") + Permian = PermissibleValue(text="Permian") + Precambrian = PermissibleValue(text="Precambrian") + Proterozoic = PermissibleValue(text="Proterozoic") + Silurian = PermissibleValue(text="Silurian") + Triassic = PermissibleValue(text="Triassic") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="WindowMatEnum", + name="SrGeolAgeEnum", ) -class FurnitureEnum(EnumDefinitionImpl): +class HcrEnum(EnumDefinitionImpl): - cabinet = PermissibleValue(text="cabinet") - chair = PermissibleValue(text="chair") - desks = PermissibleValue(text="desks") + Coalbed = PermissibleValue(text="Coalbed") + Shale = PermissibleValue(text="Shale") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="FurnitureEnum", + name="HcrEnum", ) -class CeilCondEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "Oil Reservoir", + PermissibleValue(text="Oil Reservoir") ) + setattr(cls, "Gas Reservoir", + PermissibleValue(text="Gas Reservoir") ) + setattr(cls, "Oil Sand", + PermissibleValue(text="Oil Sand") ) + setattr(cls, "Tight Oil Reservoir", + PermissibleValue(text="Tight Oil Reservoir") ) + setattr(cls, "Tight Gas Reservoir", + PermissibleValue(text="Tight Gas Reservoir") ) - new = PermissibleValue(text="new") - damaged = PermissibleValue(text="damaged") - rupture = PermissibleValue(text="rupture") +class RoomLocEnum(EnumDefinitionImpl): _defn = EnumDefinition( - name="CeilCondEnum", + name="RoomLocEnum", ) @classmethod def _addvals(cls): - setattr(cls, "visible wear", - PermissibleValue(text="visible wear") ) - setattr(cls, "needs repair", - PermissibleValue(text="needs repair") ) + setattr(cls, "corner room", + PermissibleValue(text="corner room") ) + setattr(cls, "interior room", + PermissibleValue(text="interior room") ) + setattr(cls, "exterior wall", + PermissibleValue(text="exterior wall") ) class RoomTypeEnum(EnumDefinitionImpl): @@ -6506,415 +6611,156 @@ def _addvals(cls): setattr(cls, "data center", PermissibleValue(text="data center") ) -class FloorCondEnum(EnumDefinitionImpl): - - new = PermissibleValue(text="new") - damaged = PermissibleValue(text="damaged") - rupture = PermissibleValue(text="rupture") - - _defn = EnumDefinition( - name="FloorCondEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "visible wear", - PermissibleValue(text="visible wear") ) - setattr(cls, "needs repair", - PermissibleValue(text="needs repair") ) - -class WindowHorizPosEnum(EnumDefinitionImpl): - - left = PermissibleValue(text="left") - middle = PermissibleValue(text="middle") - right = PermissibleValue(text="right") - - _defn = EnumDefinition( - name="WindowHorizPosEnum", - ) - -class WallLocEnum(EnumDefinitionImpl): - - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") - - _defn = EnumDefinition( - name="WallLocEnum", - ) - -class FreqCleanEnum(EnumDefinitionImpl): - - Daily = PermissibleValue(text="Daily") - Weekly = PermissibleValue(text="Weekly") - Monthly = PermissibleValue(text="Monthly") - Quarterly = PermissibleValue(text="Quarterly") - Annually = PermissibleValue(text="Annually") - other = PermissibleValue(text="other") - - _defn = EnumDefinition( - name="FreqCleanEnum", - ) - -class DrainageClassEnum(EnumDefinitionImpl): - - poorly = PermissibleValue(text="poorly") - well = PermissibleValue(text="well") - - _defn = EnumDefinition( - name="DrainageClassEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "very poorly", - PermissibleValue(text="very poorly") ) - setattr(cls, "somewhat poorly", - PermissibleValue(text="somewhat poorly") ) - setattr(cls, "moderately well", - PermissibleValue(text="moderately well") ) - setattr(cls, "excessively drained", - PermissibleValue(text="excessively drained") ) - -class ShadingDeviceTypeEnum(EnumDefinitionImpl): - - tree = PermissibleValue(text="tree") - trellis = PermissibleValue(text="trellis") - - _defn = EnumDefinition( - name="ShadingDeviceTypeEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "bahama shutters", - PermissibleValue(text="bahama shutters") ) - setattr(cls, "exterior roll blind", - PermissibleValue(text="exterior roll blind") ) - setattr(cls, "gambrel awning", - PermissibleValue(text="gambrel awning") ) - setattr(cls, "hood awning", - PermissibleValue(text="hood awning") ) - setattr(cls, "porchroller awning", - PermissibleValue(text="porchroller awning") ) - setattr(cls, "sarasota shutters", - PermissibleValue(text="sarasota shutters") ) - setattr(cls, "slatted aluminum", - PermissibleValue(text="slatted aluminum") ) - setattr(cls, "solid aluminum awning", - PermissibleValue(text="solid aluminum awning") ) - setattr(cls, "sun screen", - PermissibleValue(text="sun screen") ) - setattr(cls, "venetian awning", - PermissibleValue(text="venetian awning") ) - -class SrKerogTypeEnum(EnumDefinitionImpl): - - other = PermissibleValue(text="other") - - _defn = EnumDefinition( - name="SrKerogTypeEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "Type I", - PermissibleValue(text="Type I") ) - setattr(cls, "Type II", - PermissibleValue(text="Type II") ) - setattr(cls, "Type III", - PermissibleValue(text="Type III") ) - setattr(cls, "Type IV", - PermissibleValue(text="Type IV") ) - -class ShadingDeviceCondEnum(EnumDefinitionImpl): - - damaged = PermissibleValue(text="damaged") - new = PermissibleValue(text="new") - rupture = PermissibleValue(text="rupture") - - _defn = EnumDefinition( - name="ShadingDeviceCondEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "needs repair", - PermissibleValue(text="needs repair") ) - setattr(cls, "visible wear", - PermissibleValue(text="visible wear") ) - -class HcrEnum(EnumDefinitionImpl): - - Coalbed = PermissibleValue(text="Coalbed") - Shale = PermissibleValue(text="Shale") - other = PermissibleValue(text="other") - - _defn = EnumDefinition( - name="HcrEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "Oil Reservoir", - PermissibleValue(text="Oil Reservoir") ) - setattr(cls, "Gas Reservoir", - PermissibleValue(text="Gas Reservoir") ) - setattr(cls, "Oil Sand", - PermissibleValue(text="Oil Sand") ) - setattr(cls, "Tight Oil Reservoir", - PermissibleValue(text="Tight Oil Reservoir") ) - setattr(cls, "Tight Gas Reservoir", - PermissibleValue(text="Tight Gas Reservoir") ) - -class CeilTypeEnum(EnumDefinitionImpl): - - cathedral = PermissibleValue(text="cathedral") - dropped = PermissibleValue(text="dropped") - concave = PermissibleValue(text="concave") - coffered = PermissibleValue(text="coffered") - cove = PermissibleValue(text="cove") - stretched = PermissibleValue(text="stretched") - - _defn = EnumDefinition( - name="CeilTypeEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "barrel-shaped", - PermissibleValue(text="barrel-shaped") ) - -class SampSubtypeEnum(EnumDefinitionImpl): - - biofilm = PermissibleValue(text="biofilm") - other = PermissibleValue(text="other") - - _defn = EnumDefinition( - name="SampSubtypeEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "oil phase", - PermissibleValue(text="oil phase") ) - setattr(cls, "water phase", - PermissibleValue(text="water phase") ) - setattr(cls, "not applicable", - PermissibleValue(text="not applicable") ) - -class BuildOccupTypeEnum(EnumDefinitionImpl): - - office = PermissibleValue(text="office") - market = PermissibleValue(text="market") - restaurant = PermissibleValue(text="restaurant") - residence = PermissibleValue(text="residence") - school = PermissibleValue(text="school") - residential = PermissibleValue(text="residential") - commercial = PermissibleValue(text="commercial") - airport = PermissibleValue(text="airport") - - _defn = EnumDefinition( - name="BuildOccupTypeEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "low rise", - PermissibleValue(text="low rise") ) - setattr(cls, "high rise", - PermissibleValue(text="high rise") ) - setattr(cls, "wood framed", - PermissibleValue(text="wood framed") ) - setattr(cls, "health care", - PermissibleValue(text="health care") ) - setattr(cls, "sports complex", - PermissibleValue(text="sports complex") ) - -class DrawingsEnum(EnumDefinitionImpl): - - operation = PermissibleValue(text="operation") - construction = PermissibleValue(text="construction") - bid = PermissibleValue(text="bid") - design = PermissibleValue(text="design") - diagram = PermissibleValue(text="diagram") - sketch = PermissibleValue(text="sketch") - - _defn = EnumDefinition( - name="DrawingsEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "as built", - PermissibleValue(text="as built") ) - setattr(cls, "building navigation map", - PermissibleValue(text="building navigation map") ) - -class SubstructureTypeEnum(EnumDefinitionImpl): - - crawlspace = PermissibleValue(text="crawlspace") - basement = PermissibleValue(text="basement") - - _defn = EnumDefinition( - name="SubstructureTypeEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "slab on grade", - PermissibleValue(text="slab on grade") ) - -class IndoorSurfEnum(EnumDefinitionImpl): - - cabinet = PermissibleValue(text="cabinet") - ceiling = PermissibleValue(text="ceiling") - door = PermissibleValue(text="door") - shelving = PermissibleValue(text="shelving") - window = PermissibleValue(text="window") - wall = PermissibleValue(text="wall") - - _defn = EnumDefinition( - name="IndoorSurfEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "counter top", - PermissibleValue(text="counter top") ) - setattr(cls, "vent cover", - PermissibleValue(text="vent cover") ) - -class DoorLocEnum(EnumDefinitionImpl): - - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") - - _defn = EnumDefinition( - name="DoorLocEnum", - ) - -class SampMdEnum(EnumDefinitionImpl): +class GrowthHabitEnum(EnumDefinitionImpl): - DF = PermissibleValue(text="DF") - RT = PermissibleValue(text="RT") - KB = PermissibleValue(text="KB") - MSL = PermissibleValue(text="MSL") - other = PermissibleValue(text="other") + erect = PermissibleValue(text="erect") + spreading = PermissibleValue(text="spreading") + prostrate = PermissibleValue(text="prostrate") _defn = EnumDefinition( - name="SampMdEnum", + name="GrowthHabitEnum", ) -class BioticRelationshipEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "semi-erect", + PermissibleValue(text="semi-erect") ) - parasite = PermissibleValue(text="parasite") - commensal = PermissibleValue(text="commensal") - symbiont = PermissibleValue(text="symbiont") +class DoorCompTypeEnum(EnumDefinitionImpl): + + revolving = PermissibleValue(text="revolving") + sliding = PermissibleValue(text="sliding") + telescopic = PermissibleValue(text="telescopic") _defn = EnumDefinition( - name="BioticRelationshipEnum", + name="DoorCompTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "free living", - PermissibleValue(text="free living") ) + setattr(cls, "metal covered", + PermissibleValue(text="metal covered") ) -class SurfAirContEnum(EnumDefinitionImpl): +class FloorStrucEnum(EnumDefinitionImpl): - dust = PermissibleValue(text="dust") - radon = PermissibleValue(text="radon") - nutrients = PermissibleValue(text="nutrients") - biocides = PermissibleValue(text="biocides") + balcony = PermissibleValue(text="balcony") + concrete = PermissibleValue(text="concrete") _defn = EnumDefinition( - name="SurfAirContEnum", + name="FloorStrucEnum", ) @classmethod def _addvals(cls): - setattr(cls, "organic matter", - PermissibleValue(text="organic matter") ) - setattr(cls, "particulate matter", - PermissibleValue(text="particulate matter") ) - setattr(cls, "volatile organic compounds", - PermissibleValue(text="volatile organic compounds") ) - setattr(cls, "biological contaminants", - PermissibleValue(text="biological contaminants") ) + setattr(cls, "floating floor", + PermissibleValue(text="floating floor") ) + setattr(cls, "glass floor", + PermissibleValue(text="glass floor") ) + setattr(cls, "raised floor", + PermissibleValue(text="raised floor") ) + setattr(cls, "sprung floor", + PermissibleValue(text="sprung floor") ) + setattr(cls, "wood-framed", + PermissibleValue(text="wood-framed") ) -class SampFloorEnum(EnumDefinitionImpl): +class WindowCoverEnum(EnumDefinitionImpl): - basement = PermissibleValue(text="basement") - lobby = PermissibleValue(text="lobby") + blinds = PermissibleValue(text="blinds") + curtains = PermissibleValue(text="curtains") + none = PermissibleValue(text="none") _defn = EnumDefinition( - name="SampFloorEnum", + name="WindowCoverEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "1st floor", - PermissibleValue(text="1st floor") ) - setattr(cls, "2nd floor", - PermissibleValue(text="2nd floor") ) +class FreqCleanEnum(EnumDefinitionImpl): -class DoorTypeWoodEnum(EnumDefinitionImpl): + Daily = PermissibleValue(text="Daily") + Weekly = PermissibleValue(text="Weekly") + Monthly = PermissibleValue(text="Monthly") + Quarterly = PermissibleValue(text="Quarterly") + Annually = PermissibleValue(text="Annually") + other = PermissibleValue(text="other") - battened = PermissibleValue(text="battened") - flush = PermissibleValue(text="flush") - louvered = PermissibleValue(text="louvered") + _defn = EnumDefinition( + name="FreqCleanEnum", + ) + +class WallTextureEnum(EnumDefinitionImpl): + + knockdown = PermissibleValue(text="knockdown") + popcorn = PermissibleValue(text="popcorn") + smooth = PermissibleValue(text="smooth") + swirl = PermissibleValue(text="swirl") _defn = EnumDefinition( - name="DoorTypeWoodEnum", + name="WallTextureEnum", ) @classmethod def _addvals(cls): - setattr(cls, "bettened and ledged", - PermissibleValue(text="bettened and ledged") ) - setattr(cls, "ledged and braced", - PermissibleValue(text="ledged and braced") ) - setattr(cls, "ledged and framed", - PermissibleValue(text="ledged and framed") ) - setattr(cls, "ledged, braced and frame", - PermissibleValue(text="ledged, braced and frame") ) - setattr(cls, "framed and paneled", - PermissibleValue(text="framed and paneled") ) - setattr(cls, "glashed or sash", - PermissibleValue(text="glashed or sash") ) - setattr(cls, "wire gauged", - PermissibleValue(text="wire gauged") ) + setattr(cls, "crows feet", + PermissibleValue(text="crows feet") ) + setattr(cls, "crows-foot stomp", + PermissibleValue(text="crows-foot stomp") ) + setattr(cls, "", + PermissibleValue(text="") ) + setattr(cls, "double skip", + PermissibleValue(text="double skip") ) + setattr(cls, "hawk and trowel", + PermissibleValue(text="hawk and trowel") ) + setattr(cls, "orange peel", + PermissibleValue(text="orange peel") ) + setattr(cls, "rosebud stomp", + PermissibleValue(text="rosebud stomp") ) + setattr(cls, "Santa-Fe texture", + PermissibleValue(text="Santa-Fe texture") ) + setattr(cls, "skip trowel", + PermissibleValue(text="skip trowel") ) + setattr(cls, "stomp knockdown", + PermissibleValue(text="stomp knockdown") ) -class DoorDirectEnum(EnumDefinitionImpl): +class WindowMatEnum(EnumDefinitionImpl): - inward = PermissibleValue(text="inward") - outward = PermissibleValue(text="outward") - sideways = PermissibleValue(text="sideways") + clad = PermissibleValue(text="clad") + fiberglass = PermissibleValue(text="fiberglass") + metal = PermissibleValue(text="metal") + vinyl = PermissibleValue(text="vinyl") + wood = PermissibleValue(text="wood") _defn = EnumDefinition( - name="DoorDirectEnum", + name="WindowMatEnum", ) -class DoorCondEnum(EnumDefinitionImpl): +class LightTypeEnum(EnumDefinitionImpl): - damaged = PermissibleValue(text="damaged") - new = PermissibleValue(text="new") - rupture = PermissibleValue(text="rupture") + none = PermissibleValue(text="none") _defn = EnumDefinition( - name="DoorCondEnum", + name="LightTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "needs repair", - PermissibleValue(text="needs repair") ) - setattr(cls, "visible wear", - PermissibleValue(text="visible wear") ) + setattr(cls, "natural light", + PermissibleValue(text="natural light") ) + setattr(cls, "electric light", + PermissibleValue(text="electric light") ) + setattr(cls, "desk lamp", + PermissibleValue(text="desk lamp") ) + setattr(cls, "flourescent lights", + PermissibleValue(text="flourescent lights") ) + +class SeasonUseEnum(EnumDefinitionImpl): + + Spring = PermissibleValue(text="Spring") + Summer = PermissibleValue(text="Summer") + Fall = PermissibleValue(text="Fall") + Winter = PermissibleValue(text="Winter") + + _defn = EnumDefinition( + name="SeasonUseEnum", + ) class SoilHorizonEnum(EnumDefinitionImpl): @@ -6939,159 +6785,171 @@ def _addvals(cls): setattr(cls, "R layer", PermissibleValue(text="R layer") ) -class GrowthHabitEnum(EnumDefinitionImpl): - - erect = PermissibleValue(text="erect") - spreading = PermissibleValue(text="spreading") - prostrate = PermissibleValue(text="prostrate") +class WallConstTypeEnum(EnumDefinitionImpl): _defn = EnumDefinition( - name="GrowthHabitEnum", + name="WallConstTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "semi-erect", - PermissibleValue(text="semi-erect") ) + setattr(cls, "frame construction", + PermissibleValue(text="frame construction") ) + setattr(cls, "joisted masonry", + PermissibleValue(text="joisted masonry") ) + setattr(cls, "light noncombustible", + PermissibleValue(text="light noncombustible") ) + setattr(cls, "masonry noncombustible", + PermissibleValue(text="masonry noncombustible") ) + setattr(cls, "modified fire resistive", + PermissibleValue(text="modified fire resistive") ) + setattr(cls, "fire resistive", + PermissibleValue(text="fire resistive") ) -class HcProducedEnum(EnumDefinitionImpl): +class ShadingDeviceTypeEnum(EnumDefinitionImpl): - Oil = PermissibleValue(text="Oil") - Gas = PermissibleValue(text="Gas") - Bitumen = PermissibleValue(text="Bitumen") - other = PermissibleValue(text="other") + tree = PermissibleValue(text="tree") + trellis = PermissibleValue(text="trellis") _defn = EnumDefinition( - name="HcProducedEnum", + name="ShadingDeviceTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "Gas-Condensate", - PermissibleValue(text="Gas-Condensate") ) - setattr(cls, "Coalbed Methane", - PermissibleValue(text="Coalbed Methane") ) - -class TrainStopLocEnum(EnumDefinitionImpl): - - end = PermissibleValue(text="end") - mid = PermissibleValue(text="mid") - downtown = PermissibleValue(text="downtown") + setattr(cls, "bahama shutters", + PermissibleValue(text="bahama shutters") ) + setattr(cls, "exterior roll blind", + PermissibleValue(text="exterior roll blind") ) + setattr(cls, "gambrel awning", + PermissibleValue(text="gambrel awning") ) + setattr(cls, "hood awning", + PermissibleValue(text="hood awning") ) + setattr(cls, "porchroller awning", + PermissibleValue(text="porchroller awning") ) + setattr(cls, "sarasota shutters", + PermissibleValue(text="sarasota shutters") ) + setattr(cls, "slatted aluminum", + PermissibleValue(text="slatted aluminum") ) + setattr(cls, "solid aluminum awning", + PermissibleValue(text="solid aluminum awning") ) + setattr(cls, "sun screen", + PermissibleValue(text="sun screen") ) + setattr(cls, "venetian awning", + PermissibleValue(text="venetian awning") ) - _defn = EnumDefinition( - name="TrainStopLocEnum", - ) +class WallFinishMatEnum(EnumDefinitionImpl): -class TidalStageEnum(EnumDefinitionImpl): + plaster = PermissibleValue(text="plaster") + tile = PermissibleValue(text="tile") + terrazzo = PermissibleValue(text="terrazzo") + wood = PermissibleValue(text="wood") + metal = PermissibleValue(text="metal") + masonry = PermissibleValue(text="masonry") _defn = EnumDefinition( - name="TidalStageEnum", + name="WallFinishMatEnum", ) @classmethod - def _addvals(cls): - setattr(cls, "low tide", - PermissibleValue(text="low tide") ) - setattr(cls, "ebb tide", - PermissibleValue(text="ebb tide") ) - setattr(cls, "flood tide", - PermissibleValue(text="flood tide") ) - setattr(cls, "high tide", - PermissibleValue(text="high tide") ) + def _addvals(cls): + setattr(cls, "gypsum plaster", + PermissibleValue(text="gypsum plaster") ) + setattr(cls, "veneer plaster", + PermissibleValue(text="veneer plaster") ) + setattr(cls, "gypsum board", + PermissibleValue(text="gypsum board") ) + setattr(cls, "stone facing", + PermissibleValue(text="stone facing") ) + setattr(cls, "acoustical treatment", + PermissibleValue(text="acoustical treatment") ) -class SampWeatherEnum(EnumDefinitionImpl): +class WaterFeatTypeEnum(EnumDefinitionImpl): - cloudy = PermissibleValue(text="cloudy") - foggy = PermissibleValue(text="foggy") - hail = PermissibleValue(text="hail") - rain = PermissibleValue(text="rain") - snow = PermissibleValue(text="snow") - sleet = PermissibleValue(text="sleet") - sunny = PermissibleValue(text="sunny") - windy = PermissibleValue(text="windy") + fountain = PermissibleValue(text="fountain") + pool = PermissibleValue(text="pool") + stream = PermissibleValue(text="stream") + waterfall = PermissibleValue(text="waterfall") _defn = EnumDefinition( - name="SampWeatherEnum", + name="WaterFeatTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "clear sky", - PermissibleValue(text="clear sky") ) + setattr(cls, "standing feature", + PermissibleValue(text="standing feature") ) -class FloorWaterMoldEnum(EnumDefinitionImpl): +class FilterTypeEnum(EnumDefinitionImpl): - condensation = PermissibleValue(text="condensation") + HEPA = PermissibleValue(text="HEPA") + electrostatic = PermissibleValue(text="electrostatic") _defn = EnumDefinition( - name="FloorWaterMoldEnum", + name="FilterTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "mold odor", - PermissibleValue(text="mold odor") ) - setattr(cls, "wet floor", - PermissibleValue(text="wet floor") ) - setattr(cls, "water stains", - PermissibleValue(text="water stains") ) - setattr(cls, "wall discoloration", - PermissibleValue(text="wall discoloration") ) - setattr(cls, "floor discoloration", - PermissibleValue(text="floor discoloration") ) - setattr(cls, "ceiling discoloration", - PermissibleValue(text="ceiling discoloration") ) - setattr(cls, "peeling paint or wallpaper", - PermissibleValue(text="peeling paint or wallpaper") ) - setattr(cls, "bulging walls", - PermissibleValue(text="bulging walls") ) + setattr(cls, "particulate air filter", + PermissibleValue(text="particulate air filter") ) + setattr(cls, "chemical air filter", + PermissibleValue(text="chemical air filter") ) + setattr(cls, "low-MERV pleated media", + PermissibleValue(text="low-MERV pleated media") ) + setattr(cls, "gas-phase or ultraviolet air treatments", + PermissibleValue(text="gas-phase or ultraviolet air treatments") ) -class TrainStatLocEnum(EnumDefinitionImpl): +class TillageEnum(EnumDefinitionImpl): - riverside = PermissibleValue(text="riverside") + drill = PermissibleValue(text="drill") + chisel = PermissibleValue(text="chisel") + tined = PermissibleValue(text="tined") + mouldboard = PermissibleValue(text="mouldboard") _defn = EnumDefinition( - name="TrainStatLocEnum", + name="TillageEnum", ) @classmethod def _addvals(cls): - setattr(cls, "south station above ground", - PermissibleValue(text="south station above ground") ) - setattr(cls, "south station underground", - PermissibleValue(text="south station underground") ) - setattr(cls, "south station amtrak", - PermissibleValue(text="south station amtrak") ) - setattr(cls, "forest hills", - PermissibleValue(text="forest hills") ) + setattr(cls, "cutting disc", + PermissibleValue(text="cutting disc") ) + setattr(cls, "ridge till", + PermissibleValue(text="ridge till") ) + setattr(cls, "strip tillage", + PermissibleValue(text="strip tillage") ) + setattr(cls, "zonal tillage", + PermissibleValue(text="zonal tillage") ) + setattr(cls, "disc plough", + PermissibleValue(text="disc plough") ) -class IndoorSpaceEnum(EnumDefinitionImpl): +class WallSurfTreatmentEnum(EnumDefinitionImpl): - bedroom = PermissibleValue(text="bedroom") - office = PermissibleValue(text="office") - bathroom = PermissibleValue(text="bathroom") - foyer = PermissibleValue(text="foyer") - kitchen = PermissibleValue(text="kitchen") - hallway = PermissibleValue(text="hallway") - elevator = PermissibleValue(text="elevator") + painted = PermissibleValue(text="painted") + paneling = PermissibleValue(text="paneling") + stucco = PermissibleValue(text="stucco") + fabric = PermissibleValue(text="fabric") _defn = EnumDefinition( - name="IndoorSpaceEnum", + name="WallSurfTreatmentEnum", ) @classmethod def _addvals(cls): - setattr(cls, "locker room", - PermissibleValue(text="locker room") ) + setattr(cls, "wall paper", + PermissibleValue(text="wall paper") ) + setattr(cls, "no treatment", + PermissibleValue(text="no treatment") ) -class IntWallCondEnum(EnumDefinitionImpl): +class FloorCondEnum(EnumDefinitionImpl): new = PermissibleValue(text="new") damaged = PermissibleValue(text="damaged") rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="IntWallCondEnum", + name="FloorCondEnum", ) @classmethod @@ -7101,140 +6959,97 @@ def _addvals(cls): setattr(cls, "needs repair", PermissibleValue(text="needs repair") ) -class BuildingSettingEnum(EnumDefinitionImpl): +class WeekdayEnum(EnumDefinitionImpl): - urban = PermissibleValue(text="urban") - suburban = PermissibleValue(text="suburban") - exurban = PermissibleValue(text="exurban") - rural = PermissibleValue(text="rural") + Monday = PermissibleValue(text="Monday") + Tuesday = PermissibleValue(text="Tuesday") + Wednesday = PermissibleValue(text="Wednesday") + Thursday = PermissibleValue(text="Thursday") + Friday = PermissibleValue(text="Friday") + Saturday = PermissibleValue(text="Saturday") + Sunday = PermissibleValue(text="Sunday") _defn = EnumDefinition( - name="BuildingSettingEnum", + name="WeekdayEnum", ) -class FaoClassEnum(EnumDefinitionImpl): +class WindowHorizPosEnum(EnumDefinitionImpl): - Acrisols = PermissibleValue(text="Acrisols") - Andosols = PermissibleValue(text="Andosols") - Arenosols = PermissibleValue(text="Arenosols") - Cambisols = PermissibleValue(text="Cambisols") - Chernozems = PermissibleValue(text="Chernozems") - Ferralsols = PermissibleValue(text="Ferralsols") - Fluvisols = PermissibleValue(text="Fluvisols") - Gleysols = PermissibleValue(text="Gleysols") - Greyzems = PermissibleValue(text="Greyzems") - Gypsisols = PermissibleValue(text="Gypsisols") - Histosols = PermissibleValue(text="Histosols") - Kastanozems = PermissibleValue(text="Kastanozems") - Lithosols = PermissibleValue(text="Lithosols") - Luvisols = PermissibleValue(text="Luvisols") - Nitosols = PermissibleValue(text="Nitosols") - Phaeozems = PermissibleValue(text="Phaeozems") - Planosols = PermissibleValue(text="Planosols") - Podzols = PermissibleValue(text="Podzols") - Podzoluvisols = PermissibleValue(text="Podzoluvisols") - Rankers = PermissibleValue(text="Rankers") - Regosols = PermissibleValue(text="Regosols") - Rendzinas = PermissibleValue(text="Rendzinas") - Solonchaks = PermissibleValue(text="Solonchaks") - Solonetz = PermissibleValue(text="Solonetz") - Vertisols = PermissibleValue(text="Vertisols") - Yermosols = PermissibleValue(text="Yermosols") + left = PermissibleValue(text="left") + middle = PermissibleValue(text="middle") + right = PermissibleValue(text="right") _defn = EnumDefinition( - name="FaoClassEnum", + name="WindowHorizPosEnum", ) -class QuadPosEnum(EnumDefinitionImpl): +class WindowTypeEnum(EnumDefinitionImpl): _defn = EnumDefinition( - name="QuadPosEnum", + name="WindowTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "North side", - PermissibleValue(text="North side") ) - setattr(cls, "West side", - PermissibleValue(text="West side") ) - setattr(cls, "South side", - PermissibleValue(text="South side") ) - setattr(cls, "East side", - PermissibleValue(text="East side") ) + setattr(cls, "single-hung sash window", + PermissibleValue(text="single-hung sash window") ) + setattr(cls, "horizontal sash window", + PermissibleValue(text="horizontal sash window") ) + setattr(cls, "fixed window", + PermissibleValue(text="fixed window") ) -class DoorMatEnum(EnumDefinitionImpl): +class MechStrucEnum(EnumDefinitionImpl): - aluminum = PermissibleValue(text="aluminum") - fiberboard = PermissibleValue(text="fiberboard") - fiberglass = PermissibleValue(text="fiberglass") - metal = PermissibleValue(text="metal") - vinyl = PermissibleValue(text="vinyl") - wood = PermissibleValue(text="wood") + subway = PermissibleValue(text="subway") + coach = PermissibleValue(text="coach") + carriage = PermissibleValue(text="carriage") + elevator = PermissibleValue(text="elevator") + escalator = PermissibleValue(text="escalator") + boat = PermissibleValue(text="boat") + train = PermissibleValue(text="train") + car = PermissibleValue(text="car") + bus = PermissibleValue(text="bus") _defn = EnumDefinition( - name="DoorMatEnum", + name="MechStrucEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "cellular PVC", - PermissibleValue(text="cellular PVC") ) - setattr(cls, "engineered plastic", - PermissibleValue(text="engineered plastic") ) - setattr(cls, "thermoplastic alloy", - PermissibleValue(text="thermoplastic alloy") ) - setattr(cls, "wood/plastic composite", - PermissibleValue(text="wood/plastic composite") ) - -class WallSurfTreatmentEnum(EnumDefinitionImpl): +class SurfMaterialEnum(EnumDefinitionImpl): - painted = PermissibleValue(text="painted") - paneling = PermissibleValue(text="paneling") + adobe = PermissibleValue(text="adobe") + carpet = PermissibleValue(text="carpet") + concrete = PermissibleValue(text="concrete") + glass = PermissibleValue(text="glass") + metal = PermissibleValue(text="metal") + paint = PermissibleValue(text="paint") + plastic = PermissibleValue(text="plastic") + stone = PermissibleValue(text="stone") stucco = PermissibleValue(text="stucco") - fabric = PermissibleValue(text="fabric") - - _defn = EnumDefinition( - name="WallSurfTreatmentEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "wall paper", - PermissibleValue(text="wall paper") ) - setattr(cls, "no treatment", - PermissibleValue(text="no treatment") ) - -class SedimentTypeEnum(EnumDefinitionImpl): - - biogenous = PermissibleValue(text="biogenous") - cosmogenous = PermissibleValue(text="cosmogenous") - hydrogenous = PermissibleValue(text="hydrogenous") - lithogenous = PermissibleValue(text="lithogenous") - - _defn = EnumDefinition( - name="SedimentTypeEnum", - ) - -class SrDepEnvEnum(EnumDefinitionImpl): - - Lacustine = PermissibleValue(text="Lacustine") - Fluvioldeltaic = PermissibleValue(text="Fluvioldeltaic") - Fluviomarine = PermissibleValue(text="Fluviomarine") - Marine = PermissibleValue(text="Marine") - other = PermissibleValue(text="other") + tile = PermissibleValue(text="tile") + vinyl = PermissibleValue(text="vinyl") + wood = PermissibleValue(text="wood") _defn = EnumDefinition( - name="SrDepEnvEnum", + name="SurfMaterialEnum", ) -class WindowCondEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "cinder blocks", + PermissibleValue(text="cinder blocks") ) + setattr(cls, "hay bales", + PermissibleValue(text="hay bales") ) + setattr(cls, "stainless steel", + PermissibleValue(text="stainless steel") ) + +class DoorCondEnum(EnumDefinitionImpl): damaged = PermissibleValue(text="damaged") new = PermissibleValue(text="new") rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="WindowCondEnum", + name="DoorCondEnum", ) @classmethod @@ -7244,111 +7059,78 @@ def _addvals(cls): setattr(cls, "visible wear", PermissibleValue(text="visible wear") ) -class RoomLocEnum(EnumDefinitionImpl): +class BioticRelationshipEnum(EnumDefinitionImpl): + + parasite = PermissibleValue(text="parasite") + commensal = PermissibleValue(text="commensal") + symbiont = PermissibleValue(text="symbiont") _defn = EnumDefinition( - name="RoomLocEnum", + name="BioticRelationshipEnum", ) @classmethod def _addvals(cls): - setattr(cls, "corner room", - PermissibleValue(text="corner room") ) - setattr(cls, "interior room", - PermissibleValue(text="interior room") ) - setattr(cls, "exterior wall", - PermissibleValue(text="exterior wall") ) + setattr(cls, "free living", + PermissibleValue(text="free living") ) -class HandidnessEnum(EnumDefinitionImpl): +class DoorMoveEnum(EnumDefinitionImpl): - ambidexterity = PermissibleValue(text="ambidexterity") + collapsible = PermissibleValue(text="collapsible") + folding = PermissibleValue(text="folding") + revolving = PermissibleValue(text="revolving") + sliding = PermissibleValue(text="sliding") + swinging = PermissibleValue(text="swinging") _defn = EnumDefinition( - name="HandidnessEnum", + name="DoorMoveEnum", ) @classmethod def _addvals(cls): - setattr(cls, "left handedness", - PermissibleValue(text="left handedness") ) - setattr(cls, "mixed-handedness", - PermissibleValue(text="mixed-handedness") ) - setattr(cls, "right handedness", - PermissibleValue(text="right handedness") ) - -class HeatDelivLocEnum(EnumDefinitionImpl): - - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") - - _defn = EnumDefinition( - name="HeatDelivLocEnum", - ) + setattr(cls, "rolling shutter", + PermissibleValue(text="rolling shutter") ) -class SampCollectPointEnum(EnumDefinitionImpl): +class IndoorSpaceEnum(EnumDefinitionImpl): - well = PermissibleValue(text="well") - wellhead = PermissibleValue(text="wellhead") - separator = PermissibleValue(text="separator") - other = PermissibleValue(text="other") + bedroom = PermissibleValue(text="bedroom") + office = PermissibleValue(text="office") + bathroom = PermissibleValue(text="bathroom") + foyer = PermissibleValue(text="foyer") + kitchen = PermissibleValue(text="kitchen") + hallway = PermissibleValue(text="hallway") + elevator = PermissibleValue(text="elevator") _defn = EnumDefinition( - name="SampCollectPointEnum", + name="IndoorSpaceEnum", ) @classmethod def _addvals(cls): - setattr(cls, "test well", - PermissibleValue(text="test well") ) - setattr(cls, "drilling rig", - PermissibleValue(text="drilling rig") ) - setattr(cls, "storage tank", - PermissibleValue(text="storage tank") ) + setattr(cls, "locker room", + PermissibleValue(text="locker room") ) -class DeposEnvEnum(EnumDefinitionImpl): +class IndoorSurfEnum(EnumDefinitionImpl): - other = PermissibleValue(text="other") + cabinet = PermissibleValue(text="cabinet") + ceiling = PermissibleValue(text="ceiling") + door = PermissibleValue(text="door") + shelving = PermissibleValue(text="shelving") + window = PermissibleValue(text="window") + wall = PermissibleValue(text="wall") _defn = EnumDefinition( - name="DeposEnvEnum", + name="IndoorSurfEnum", ) @classmethod def _addvals(cls): - setattr(cls, "Continental - Alluvial", - PermissibleValue(text="Continental - Alluvial") ) - setattr(cls, "Continental - Aeolian", - PermissibleValue(text="Continental - Aeolian") ) - setattr(cls, "Continental - Fluvial", - PermissibleValue(text="Continental - Fluvial") ) - setattr(cls, "Continental - Lacustrine", - PermissibleValue(text="Continental - Lacustrine") ) - setattr(cls, "Transitional - Deltaic", - PermissibleValue(text="Transitional - Deltaic") ) - setattr(cls, "Transitional - Tidal", - PermissibleValue(text="Transitional - Tidal") ) - setattr(cls, "Transitional - Lagoonal", - PermissibleValue(text="Transitional - Lagoonal") ) - setattr(cls, "Transitional - Beach", - PermissibleValue(text="Transitional - Beach") ) - setattr(cls, "Transitional - Lake", - PermissibleValue(text="Transitional - Lake") ) - setattr(cls, "Marine - Shallow", - PermissibleValue(text="Marine - Shallow") ) - setattr(cls, "Marine - Deep", - PermissibleValue(text="Marine - Deep") ) - setattr(cls, "Marine - Reef", - PermissibleValue(text="Marine - Reef") ) - setattr(cls, "Other - Evaporite", - PermissibleValue(text="Other - Evaporite") ) - setattr(cls, "Other - Glacial", - PermissibleValue(text="Other - Glacial") ) - setattr(cls, "Other - Volcanic", - PermissibleValue(text="Other - Volcanic") ) + setattr(cls, "counter top", + PermissibleValue(text="counter top") ) + setattr(cls, "vent cover", + PermissibleValue(text="vent cover") ) -class WallTextureEnum(EnumDefinitionImpl): +class CeilTextureEnum(EnumDefinitionImpl): knockdown = PermissibleValue(text="knockdown") popcorn = PermissibleValue(text="popcorn") @@ -7356,7 +7138,7 @@ class WallTextureEnum(EnumDefinitionImpl): swirl = PermissibleValue(text="swirl") _defn = EnumDefinition( - name="WallTextureEnum", + name="CeilTextureEnum", ) @classmethod @@ -7365,8 +7147,6 @@ def _addvals(cls): PermissibleValue(text="crows feet") ) setattr(cls, "crows-foot stomp", PermissibleValue(text="crows-foot stomp") ) - setattr(cls, "", - PermissibleValue(text="") ) setattr(cls, "double skip", PermissibleValue(text="double skip") ) setattr(cls, "hawk and trowel", @@ -7382,69 +7162,213 @@ def _addvals(cls): setattr(cls, "stomp knockdown", PermissibleValue(text="stomp knockdown") ) -class ExtWallOrientEnum(EnumDefinitionImpl): +class BiolStatEnum(EnumDefinitionImpl): + + wild = PermissibleValue(text="wild") + natural = PermissibleValue(text="natural") + hybrid = PermissibleValue(text="hybrid") + mutant = PermissibleValue(text="mutant") + + _defn = EnumDefinition( + name="BiolStatEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "semi-natural", + PermissibleValue(text="semi-natural") ) + setattr(cls, "inbred line", + PermissibleValue(text="inbred line") ) + setattr(cls, "breeder's line", + PermissibleValue(text="breeder's line") ) + setattr(cls, "clonal selection", + PermissibleValue(text="clonal selection") ) + +class WindowCondEnum(EnumDefinitionImpl): + + damaged = PermissibleValue(text="damaged") + new = PermissibleValue(text="new") + rupture = PermissibleValue(text="rupture") + + _defn = EnumDefinition( + name="WindowCondEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "needs repair", + PermissibleValue(text="needs repair") ) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear") ) + +class HcProducedEnum(EnumDefinitionImpl): + + Oil = PermissibleValue(text="Oil") + Gas = PermissibleValue(text="Gas") + Bitumen = PermissibleValue(text="Bitumen") + other = PermissibleValue(text="other") + + _defn = EnumDefinition( + name="HcProducedEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "Gas-Condensate", + PermissibleValue(text="Gas-Condensate") ) + setattr(cls, "Coalbed Methane", + PermissibleValue(text="Coalbed Methane") ) + +class RoomConnectedEnum(EnumDefinitionImpl): + + attic = PermissibleValue(text="attic") + bathroom = PermissibleValue(text="bathroom") + closet = PermissibleValue(text="closet") + elevator = PermissibleValue(text="elevator") + hallway = PermissibleValue(text="hallway") + kitchen = PermissibleValue(text="kitchen") + office = PermissibleValue(text="office") + stairwell = PermissibleValue(text="stairwell") + + _defn = EnumDefinition( + name="RoomConnectedEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "conference room", + PermissibleValue(text="conference room") ) + setattr(cls, "examining room", + PermissibleValue(text="examining room") ) + setattr(cls, "mail room", + PermissibleValue(text="mail room") ) + +class DoorTypeMetalEnum(EnumDefinitionImpl): + + collapsible = PermissibleValue(text="collapsible") + hollow = PermissibleValue(text="hollow") + + _defn = EnumDefinition( + name="DoorTypeMetalEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "corrugated steel", + PermissibleValue(text="corrugated steel") ) + setattr(cls, "rolling shutters", + PermissibleValue(text="rolling shutters") ) + setattr(cls, "steel plate", + PermissibleValue(text="steel plate") ) + +class DoorTypeWoodEnum(EnumDefinitionImpl): + + battened = PermissibleValue(text="battened") + flush = PermissibleValue(text="flush") + louvered = PermissibleValue(text="louvered") + + _defn = EnumDefinition( + name="DoorTypeWoodEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "bettened and ledged", + PermissibleValue(text="bettened and ledged") ) + setattr(cls, "ledged and braced", + PermissibleValue(text="ledged and braced") ) + setattr(cls, "ledged and framed", + PermissibleValue(text="ledged and framed") ) + setattr(cls, "ledged, braced and frame", + PermissibleValue(text="ledged, braced and frame") ) + setattr(cls, "framed and paneled", + PermissibleValue(text="framed and paneled") ) + setattr(cls, "glashed or sash", + PermissibleValue(text="glashed or sash") ) + setattr(cls, "wire gauged", + PermissibleValue(text="wire gauged") ) + +class DrainageClassEnum(EnumDefinitionImpl): - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") - northeast = PermissibleValue(text="northeast") - southeast = PermissibleValue(text="southeast") - southwest = PermissibleValue(text="southwest") - northwest = PermissibleValue(text="northwest") + poorly = PermissibleValue(text="poorly") + well = PermissibleValue(text="well") _defn = EnumDefinition( - name="ExtWallOrientEnum", + name="DrainageClassEnum", ) -class WaterFeatTypeEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "very poorly", + PermissibleValue(text="very poorly") ) + setattr(cls, "somewhat poorly", + PermissibleValue(text="somewhat poorly") ) + setattr(cls, "moderately well", + PermissibleValue(text="moderately well") ) + setattr(cls, "excessively drained", + PermissibleValue(text="excessively drained") ) - fountain = PermissibleValue(text="fountain") - pool = PermissibleValue(text="pool") - stream = PermissibleValue(text="stream") - waterfall = PermissibleValue(text="waterfall") +class RelToOxygenEnum(EnumDefinitionImpl): + + aerobe = PermissibleValue(text="aerobe") + anaerobe = PermissibleValue(text="anaerobe") + facultative = PermissibleValue(text="facultative") + microaerophilic = PermissibleValue(text="microaerophilic") + microanaerobe = PermissibleValue(text="microanaerobe") _defn = EnumDefinition( - name="WaterFeatTypeEnum", + name="RelToOxygenEnum", ) @classmethod def _addvals(cls): - setattr(cls, "standing feature", - PermissibleValue(text="standing feature") ) + setattr(cls, "obligate aerobe", + PermissibleValue(text="obligate aerobe") ) + setattr(cls, "obligate anaerobe", + PermissibleValue(text="obligate anaerobe") ) -class FloorStrucEnum(EnumDefinitionImpl): +class HostSexEnum(EnumDefinitionImpl): - balcony = PermissibleValue(text="balcony") - concrete = PermissibleValue(text="concrete") + female = PermissibleValue(text="female") + hermaphrodite = PermissibleValue(text="hermaphrodite") + male = PermissibleValue(text="male") + neuter = PermissibleValue(text="neuter") _defn = EnumDefinition( - name="FloorStrucEnum", + name="HostSexEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "floating floor", - PermissibleValue(text="floating floor") ) - setattr(cls, "glass floor", - PermissibleValue(text="glass floor") ) - setattr(cls, "raised floor", - PermissibleValue(text="raised floor") ) - setattr(cls, "sprung floor", - PermissibleValue(text="sprung floor") ) - setattr(cls, "wood-framed", - PermissibleValue(text="wood-framed") ) - -class WindowVertPosEnum(EnumDefinitionImpl): +class FaoClassEnum(EnumDefinitionImpl): - bottom = PermissibleValue(text="bottom") - middle = PermissibleValue(text="middle") - top = PermissibleValue(text="top") - low = PermissibleValue(text="low") - high = PermissibleValue(text="high") + Acrisols = PermissibleValue(text="Acrisols") + Andosols = PermissibleValue(text="Andosols") + Arenosols = PermissibleValue(text="Arenosols") + Cambisols = PermissibleValue(text="Cambisols") + Chernozems = PermissibleValue(text="Chernozems") + Ferralsols = PermissibleValue(text="Ferralsols") + Fluvisols = PermissibleValue(text="Fluvisols") + Gleysols = PermissibleValue(text="Gleysols") + Greyzems = PermissibleValue(text="Greyzems") + Gypsisols = PermissibleValue(text="Gypsisols") + Histosols = PermissibleValue(text="Histosols") + Kastanozems = PermissibleValue(text="Kastanozems") + Lithosols = PermissibleValue(text="Lithosols") + Luvisols = PermissibleValue(text="Luvisols") + Nitosols = PermissibleValue(text="Nitosols") + Phaeozems = PermissibleValue(text="Phaeozems") + Planosols = PermissibleValue(text="Planosols") + Podzols = PermissibleValue(text="Podzols") + Podzoluvisols = PermissibleValue(text="Podzoluvisols") + Rankers = PermissibleValue(text="Rankers") + Regosols = PermissibleValue(text="Regosols") + Rendzinas = PermissibleValue(text="Rendzinas") + Solonchaks = PermissibleValue(text="Solonchaks") + Solonetz = PermissibleValue(text="Solonetz") + Vertisols = PermissibleValue(text="Vertisols") + Yermosols = PermissibleValue(text="Yermosols") _defn = EnumDefinition( - name="WindowVertPosEnum", + name="FaoClassEnum", ) class SpecificEnum(EnumDefinitionImpl): @@ -7464,45 +7388,38 @@ def _addvals(cls): setattr(cls, "as built", PermissibleValue(text="as built") ) -class LithologyEnum(EnumDefinitionImpl): +class PlantGrowthMedEnum(EnumDefinitionImpl): - Basement = PermissibleValue(text="Basement") - Chalk = PermissibleValue(text="Chalk") - Chert = PermissibleValue(text="Chert") - Coal = PermissibleValue(text="Coal") - Conglomerate = PermissibleValue(text="Conglomerate") - Diatomite = PermissibleValue(text="Diatomite") - Dolomite = PermissibleValue(text="Dolomite") - Limestone = PermissibleValue(text="Limestone") - Sandstone = PermissibleValue(text="Sandstone") - Shale = PermissibleValue(text="Shale") - Siltstone = PermissibleValue(text="Siltstone") - Volcanic = PermissibleValue(text="Volcanic") - other = PermissibleValue(text="other") + perlite = PermissibleValue(text="perlite") + pumice = PermissibleValue(text="pumice") + sand = PermissibleValue(text="sand") + soil = PermissibleValue(text="soil") + vermiculite = PermissibleValue(text="vermiculite") + water = PermissibleValue(text="water") _defn = EnumDefinition( - name="LithologyEnum", + name="PlantGrowthMedEnum", ) -class RelToOxygenEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "other artificial liquid medium", + PermissibleValue(text="other artificial liquid medium") ) + setattr(cls, "other artificial solid medium", + PermissibleValue(text="other artificial solid medium") ) + setattr(cls, "peat moss", + PermissibleValue(text="peat moss") ) - aerobe = PermissibleValue(text="aerobe") - anaerobe = PermissibleValue(text="anaerobe") - facultative = PermissibleValue(text="facultative") - microaerophilic = PermissibleValue(text="microaerophilic") - microanaerobe = PermissibleValue(text="microanaerobe") +class OxyStatSampEnum(EnumDefinitionImpl): + + aerobic = PermissibleValue(text="aerobic") + anaerobic = PermissibleValue(text="anaerobic") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="RelToOxygenEnum", + name="OxyStatSampEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "obligate aerobe", - PermissibleValue(text="obligate aerobe") ) - setattr(cls, "obligate anaerobe", - PermissibleValue(text="obligate anaerobe") ) - class WindowLocEnum(EnumDefinitionImpl): north = PermissibleValue(text="north") @@ -7514,6 +7431,23 @@ class WindowLocEnum(EnumDefinitionImpl): name="WindowLocEnum", ) +class ShadingDeviceCondEnum(EnumDefinitionImpl): + + damaged = PermissibleValue(text="damaged") + new = PermissibleValue(text="new") + rupture = PermissibleValue(text="rupture") + + _defn = EnumDefinition( + name="ShadingDeviceCondEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "needs repair", + PermissibleValue(text="needs repair") ) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear") ) + class OrganismCountEnum(EnumDefinitionImpl): ATP = PermissibleValue(text="ATP") @@ -7524,20 +7458,82 @@ class OrganismCountEnum(EnumDefinitionImpl): name="OrganismCountEnum", ) -class WindowTypeEnum(EnumDefinitionImpl): +class BuildDocsEnum(EnumDefinitionImpl): + + schedule = PermissibleValue(text="schedule") + sections = PermissibleValue(text="sections") + submittals = PermissibleValue(text="submittals") + windows = PermissibleValue(text="windows") _defn = EnumDefinition( - name="WindowTypeEnum", + name="BuildDocsEnum", ) @classmethod def _addvals(cls): - setattr(cls, "single-hung sash window", - PermissibleValue(text="single-hung sash window") ) - setattr(cls, "horizontal sash window", - PermissibleValue(text="horizontal sash window") ) - setattr(cls, "fixed window", - PermissibleValue(text="fixed window") ) + setattr(cls, "building information model", + PermissibleValue(text="building information model") ) + setattr(cls, "commissioning report", + PermissibleValue(text="commissioning report") ) + setattr(cls, "complaint logs", + PermissibleValue(text="complaint logs") ) + setattr(cls, "contract administration", + PermissibleValue(text="contract administration") ) + setattr(cls, "cost estimate", + PermissibleValue(text="cost estimate") ) + setattr(cls, "janitorial schedules or logs", + PermissibleValue(text="janitorial schedules or logs") ) + setattr(cls, "maintenance plans", + PermissibleValue(text="maintenance plans") ) + setattr(cls, "shop drawings", + PermissibleValue(text="shop drawings") ) + setattr(cls, "ventilation system", + PermissibleValue(text="ventilation system") ) + +class SampWeatherEnum(EnumDefinitionImpl): + + cloudy = PermissibleValue(text="cloudy") + foggy = PermissibleValue(text="foggy") + hail = PermissibleValue(text="hail") + rain = PermissibleValue(text="rain") + snow = PermissibleValue(text="snow") + sleet = PermissibleValue(text="sleet") + sunny = PermissibleValue(text="sunny") + windy = PermissibleValue(text="windy") + + _defn = EnumDefinition( + name="SampWeatherEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "clear sky", + PermissibleValue(text="clear sky") ) + +class ExtWindowOrientEnum(EnumDefinitionImpl): + + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") + northeast = PermissibleValue(text="northeast") + southeast = PermissibleValue(text="southeast") + southwest = PermissibleValue(text="southwest") + northwest = PermissibleValue(text="northwest") + + _defn = EnumDefinition( + name="ExtWindowOrientEnum", + ) + +class FurnitureEnum(EnumDefinitionImpl): + + cabinet = PermissibleValue(text="cabinet") + chair = PermissibleValue(text="chair") + desks = PermissibleValue(text="desks") + + _defn = EnumDefinition( + name="FurnitureEnum", + ) class GenderRestroomEnum(EnumDefinitionImpl): @@ -7558,181 +7554,179 @@ def _addvals(cls): setattr(cls, "male and female", PermissibleValue(text="male and female") ) -class OccupDocumentEnum(EnumDefinitionImpl): +class BuildOccupTypeEnum(EnumDefinitionImpl): - estimate = PermissibleValue(text="estimate") - videos = PermissibleValue(text="videos") + office = PermissibleValue(text="office") + market = PermissibleValue(text="market") + restaurant = PermissibleValue(text="restaurant") + residence = PermissibleValue(text="residence") + school = PermissibleValue(text="school") + residential = PermissibleValue(text="residential") + commercial = PermissibleValue(text="commercial") + airport = PermissibleValue(text="airport") _defn = EnumDefinition( - name="OccupDocumentEnum", + name="BuildOccupTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "automated count", - PermissibleValue(text="automated count") ) - setattr(cls, "manual count", - PermissibleValue(text="manual count") ) - -class SrGeolAgeEnum(EnumDefinitionImpl): - - Archean = PermissibleValue(text="Archean") - Cambrian = PermissibleValue(text="Cambrian") - Carboniferous = PermissibleValue(text="Carboniferous") - Cenozoic = PermissibleValue(text="Cenozoic") - Cretaceous = PermissibleValue(text="Cretaceous") - Devonian = PermissibleValue(text="Devonian") - Jurassic = PermissibleValue(text="Jurassic") - Mesozoic = PermissibleValue(text="Mesozoic") - Neogene = PermissibleValue(text="Neogene") - Ordovician = PermissibleValue(text="Ordovician") - Paleogene = PermissibleValue(text="Paleogene") - Paleozoic = PermissibleValue(text="Paleozoic") - Permian = PermissibleValue(text="Permian") - Precambrian = PermissibleValue(text="Precambrian") - Proterozoic = PermissibleValue(text="Proterozoic") - Silurian = PermissibleValue(text="Silurian") - Triassic = PermissibleValue(text="Triassic") - other = PermissibleValue(text="other") - - _defn = EnumDefinition( - name="SrGeolAgeEnum", - ) + setattr(cls, "low rise", + PermissibleValue(text="low rise") ) + setattr(cls, "high rise", + PermissibleValue(text="high rise") ) + setattr(cls, "wood framed", + PermissibleValue(text="wood framed") ) + setattr(cls, "health care", + PermissibleValue(text="health care") ) + setattr(cls, "sports complex", + PermissibleValue(text="sports complex") ) -class WallFinishMatEnum(EnumDefinitionImpl): +class CeilFinishMatEnum(EnumDefinitionImpl): - plaster = PermissibleValue(text="plaster") - tile = PermissibleValue(text="tile") - terrazzo = PermissibleValue(text="terrazzo") - wood = PermissibleValue(text="wood") + drywall = PermissibleValue(text="drywall") + tiles = PermissibleValue(text="tiles") + PVC = PermissibleValue(text="PVC") + plasterboard = PermissibleValue(text="plasterboard") metal = PermissibleValue(text="metal") - masonry = PermissibleValue(text="masonry") + fiberglass = PermissibleValue(text="fiberglass") + stucco = PermissibleValue(text="stucco") + wood = PermissibleValue(text="wood") _defn = EnumDefinition( - name="WallFinishMatEnum", + name="CeilFinishMatEnum", ) @classmethod def _addvals(cls): - setattr(cls, "gypsum plaster", - PermissibleValue(text="gypsum plaster") ) - setattr(cls, "veneer plaster", - PermissibleValue(text="veneer plaster") ) - setattr(cls, "gypsum board", - PermissibleValue(text="gypsum board") ) - setattr(cls, "stone facing", - PermissibleValue(text="stone facing") ) - setattr(cls, "acoustical treatment", - PermissibleValue(text="acoustical treatment") ) - -class ArchStrucEnum(EnumDefinitionImpl): + setattr(cls, "mineral fibre", + PermissibleValue(text="mineral fibre") ) + setattr(cls, "mineral wool/calcium silicate", + PermissibleValue(text="mineral wool/calcium silicate") ) - building = PermissibleValue(text="building") - shed = PermissibleValue(text="shed") - home = PermissibleValue(text="home") +class HeatCoolTypeEnum(EnumDefinitionImpl): _defn = EnumDefinition( - name="ArchStrucEnum", + name="HeatCoolTypeEnum", ) -class LightTypeEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "radiant system", + PermissibleValue(text="radiant system") ) + setattr(cls, "heat pump", + PermissibleValue(text="heat pump") ) + setattr(cls, "forced air system", + PermissibleValue(text="forced air system") ) + setattr(cls, "steam forced heat", + PermissibleValue(text="steam forced heat") ) + setattr(cls, "wood stove", + PermissibleValue(text="wood stove") ) - none = PermissibleValue(text="none") +class DoorMatEnum(EnumDefinitionImpl): + + aluminum = PermissibleValue(text="aluminum") + fiberboard = PermissibleValue(text="fiberboard") + fiberglass = PermissibleValue(text="fiberglass") + metal = PermissibleValue(text="metal") + vinyl = PermissibleValue(text="vinyl") + wood = PermissibleValue(text="wood") _defn = EnumDefinition( - name="LightTypeEnum", + name="DoorMatEnum", ) @classmethod def _addvals(cls): - setattr(cls, "natural light", - PermissibleValue(text="natural light") ) - setattr(cls, "electric light", - PermissibleValue(text="electric light") ) - setattr(cls, "desk lamp", - PermissibleValue(text="desk lamp") ) - setattr(cls, "flourescent lights", - PermissibleValue(text="flourescent lights") ) + setattr(cls, "cellular PVC", + PermissibleValue(text="cellular PVC") ) + setattr(cls, "engineered plastic", + PermissibleValue(text="engineered plastic") ) + setattr(cls, "thermoplastic alloy", + PermissibleValue(text="thermoplastic alloy") ) + setattr(cls, "wood/plastic composite", + PermissibleValue(text="wood/plastic composite") ) -class DoorTypeMetalEnum(EnumDefinitionImpl): +class CeilTypeEnum(EnumDefinitionImpl): - collapsible = PermissibleValue(text="collapsible") - hollow = PermissibleValue(text="hollow") + cathedral = PermissibleValue(text="cathedral") + dropped = PermissibleValue(text="dropped") + concave = PermissibleValue(text="concave") + coffered = PermissibleValue(text="coffered") + cove = PermissibleValue(text="cove") + stretched = PermissibleValue(text="stretched") _defn = EnumDefinition( - name="DoorTypeMetalEnum", + name="CeilTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "corrugated steel", - PermissibleValue(text="corrugated steel") ) - setattr(cls, "rolling shutters", - PermissibleValue(text="rolling shutters") ) - setattr(cls, "steel plate", - PermissibleValue(text="steel plate") ) + setattr(cls, "barrel-shaped", + PermissibleValue(text="barrel-shaped") ) -class CeilTextureEnum(EnumDefinitionImpl): +class HeatDelivLocEnum(EnumDefinitionImpl): - knockdown = PermissibleValue(text="knockdown") - popcorn = PermissibleValue(text="popcorn") - smooth = PermissibleValue(text="smooth") - swirl = PermissibleValue(text="swirl") + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") _defn = EnumDefinition( - name="CeilTextureEnum", + name="HeatDelivLocEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "crows feet", - PermissibleValue(text="crows feet") ) - setattr(cls, "crows-foot stomp", - PermissibleValue(text="crows-foot stomp") ) - setattr(cls, "double skip", - PermissibleValue(text="double skip") ) - setattr(cls, "hawk and trowel", - PermissibleValue(text="hawk and trowel") ) - setattr(cls, "orange peel", - PermissibleValue(text="orange peel") ) - setattr(cls, "rosebud stomp", - PermissibleValue(text="rosebud stomp") ) - setattr(cls, "Santa-Fe texture", - PermissibleValue(text="Santa-Fe texture") ) - setattr(cls, "skip trowel", - PermissibleValue(text="skip trowel") ) - setattr(cls, "stomp knockdown", - PermissibleValue(text="stomp knockdown") ) +class FloorFinishMatEnum(EnumDefinitionImpl): -class RelSampLocEnum(EnumDefinitionImpl): + tile = PermissibleValue(text="tile") + carpet = PermissibleValue(text="carpet") + rug = PermissibleValue(text="rug") + lineoleum = PermissibleValue(text="lineoleum") + stone = PermissibleValue(text="stone") + bamboo = PermissibleValue(text="bamboo") + cork = PermissibleValue(text="cork") + terrazo = PermissibleValue(text="terrazo") + concrete = PermissibleValue(text="concrete") + none = PermissibleValue(text="none") + sealed = PermissibleValue(text="sealed") + paint = PermissibleValue(text="paint") _defn = EnumDefinition( - name="RelSampLocEnum", + name="FloorFinishMatEnum", ) @classmethod def _addvals(cls): - setattr(cls, "edge of car", - PermissibleValue(text="edge of car") ) - setattr(cls, "center of car", - PermissibleValue(text="center of car") ) - setattr(cls, "under a seat", - PermissibleValue(text="under a seat") ) + setattr(cls, "wood strip or parquet", + PermissibleValue(text="wood strip or parquet") ) + setattr(cls, "laminate wood", + PermissibleValue(text="laminate wood") ) + setattr(cls, "vinyl composition tile", + PermissibleValue(text="vinyl composition tile") ) + setattr(cls, "sheet vinyl", + PermissibleValue(text="sheet vinyl") ) + setattr(cls, "clear finish", + PermissibleValue(text="clear finish") ) + setattr(cls, "none or unfinished", + PermissibleValue(text="none or unfinished") ) -class DoorCompTypeEnum(EnumDefinitionImpl): +class SampSubtypeEnum(EnumDefinitionImpl): - revolving = PermissibleValue(text="revolving") - sliding = PermissibleValue(text="sliding") - telescopic = PermissibleValue(text="telescopic") + biofilm = PermissibleValue(text="biofilm") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="DoorCompTypeEnum", + name="SampSubtypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "metal covered", - PermissibleValue(text="metal covered") ) + setattr(cls, "oil phase", + PermissibleValue(text="oil phase") ) + setattr(cls, "water phase", + PermissibleValue(text="water phase") ) + setattr(cls, "not applicable", + PermissibleValue(text="not applicable") ) class SampleTypeEnum(EnumDefinitionImpl): @@ -9995,30 +9989,30 @@ class slots: slots.xylene = Slot(uri=MIXS['0000156'], name="xylene", curie=MIXS.curie('0000156'), model_uri=NMDC.xylene, domain=None, range=Optional[Union[dict, QuantityValue]]) -slots.has_numeric_value = Slot(uri=MIXS.has_numeric_value, name="has numeric value", curie=MIXS.curie('has_numeric_value'), - model_uri=NMDC.has_numeric_value, domain=None, range=Optional[float]) +slots.has_raw_value = Slot(uri=MIXS.has_raw_value, name="has raw value", curie=MIXS.curie('has_raw_value'), + model_uri=NMDC.has_raw_value, domain=None, range=Optional[str]) -slots.core_field = Slot(uri=MIXS.core_field, name="core field", curie=MIXS.curie('core_field'), - model_uri=NMDC.core_field, domain=None, range=Optional[str]) +slots.investigation_field = Slot(uri=MIXS.investigation_field, name="investigation field", curie=MIXS.curie('investigation_field'), + model_uri=NMDC.investigation_field, domain=None, range=Optional[str]) + +slots.has_unit = Slot(uri=MIXS.has_unit, name="has unit", curie=MIXS.curie('has_unit'), + model_uri=NMDC.has_unit, domain=None, range=Optional[str]) slots.sequencing_field = Slot(uri=MIXS.sequencing_field, name="sequencing field", curie=MIXS.curie('sequencing_field'), model_uri=NMDC.sequencing_field, domain=None, range=Optional[str]) -slots.environment_field = Slot(uri=MIXS.environment_field, name="environment field", curie=MIXS.curie('environment_field'), - model_uri=NMDC.environment_field, domain=None, range=Optional[str]) +slots.core_field = Slot(uri=MIXS.core_field, name="core field", curie=MIXS.curie('core_field'), + model_uri=NMDC.core_field, domain=None, range=Optional[str]) -slots.has_raw_value = Slot(uri=MIXS.has_raw_value, name="has raw value", curie=MIXS.curie('has_raw_value'), - model_uri=NMDC.has_raw_value, domain=None, range=Optional[str]) +slots.has_numeric_value = Slot(uri=MIXS.has_numeric_value, name="has numeric value", curie=MIXS.curie('has_numeric_value'), + model_uri=NMDC.has_numeric_value, domain=None, range=Optional[float]) -slots.has_unit = Slot(uri=MIXS.has_unit, name="has unit", curie=MIXS.curie('has_unit'), - model_uri=NMDC.has_unit, domain=None, range=Optional[str]) +slots.environment_field = Slot(uri=MIXS.environment_field, name="environment field", curie=MIXS.curie('environment_field'), + model_uri=NMDC.environment_field, domain=None, range=Optional[str]) slots.nucleic_acid_sequence_source_field = Slot(uri=MIXS.nucleic_acid_sequence_source_field, name="nucleic acid sequence source field", curie=MIXS.curie('nucleic_acid_sequence_source_field'), model_uri=NMDC.nucleic_acid_sequence_source_field, domain=None, range=Optional[str]) -slots.investigation_field = Slot(uri=MIXS.investigation_field, name="investigation field", curie=MIXS.curie('investigation_field'), - model_uri=NMDC.investigation_field, domain=None, range=Optional[str]) - slots.emsl_store_temp = Slot(uri=NMDC.emsl_store_temp, name="emsl_store_temp", curie=NMDC.curie('emsl_store_temp'), model_uri=NMDC.emsl_store_temp, domain=None, range=Optional[str]) diff --git a/nmdc_schema/nmdc_materialized_patterns.yaml b/nmdc_schema/nmdc_materialized_patterns.yaml index 8fa51fe8d4..43bf19c134 100644 --- a/nmdc_schema/nmdc_materialized_patterns.yaml +++ b/nmdc_schema/nmdc_materialized_patterns.yaml @@ -23,141 +23,123 @@ id: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema version: v7.4.13 license: https://creativecommons.org/publicdomain/zero/1.0/ prefixes: - COG: - prefix_prefix: COG - prefix_reference: https://unknown.to.linter.org/ - EC: - prefix_prefix: EC - prefix_reference: https://unknown.to.linter.org/ EFO: prefix_prefix: EFO prefix_reference: http://identifiers.org/efo/ - GOLD: - prefix_prefix: GOLD - prefix_reference: http://identifiers.org/gold/ - IMG.TAXON: - prefix_prefix: IMG.TAXON - prefix_reference: http://identifiers.org/img.taxon/ ISA: prefix_prefix: ISA prefix_reference: https://unknown.to.linter.org/ - MS: - prefix_prefix: MS - prefix_reference: http://purl.obolibrary.org/obo/MS_ - MetaCyc: - prefix_prefix: MetaCyc - prefix_reference: https://identifiers.org/metacyc.reaction/ - MetaNetX: - prefix_prefix: MetaNetX - prefix_reference: https://unknown.to.linter.org/ NCIT: prefix_prefix: NCIT prefix_reference: http://purl.obolibrary.org/obo/NCIT_ OBI: prefix_prefix: OBI prefix_reference: http://purl.obolibrary.org/obo/OBI_ - RetroRules: - prefix_prefix: RetroRules - prefix_reference: https://unknown.to.linter.org/ - UniProtKB: - prefix_prefix: UniProtKB - prefix_reference: https://identifiers.org/uniprot/ bare: prefix_prefix: bare prefix_reference: https://unknown.to.linter.org/ - biolink: - prefix_prefix: biolink - prefix_reference: https://w3id.org/biolink/vocab/ - dcterms: - prefix_prefix: dcterms - prefix_reference: http://purl.org/dc/terms/ - emsl: - prefix_prefix: emsl - prefix_reference: https://unknown.to.linter.org/ - gtpo: - prefix_prefix: gtpo - prefix_reference: https://unknown.to.linter.org/ - igsn: - prefix_prefix: igsn - prefix_reference: https://app.geosamples.org/sample/igsn/ - insdc.srs: - prefix_prefix: insdc.srs - prefix_reference: https://unknown.to.linter.org/ - jgi: - prefix_prefix: jgi - prefix_reference: https://unknown.to.linter.org/ linkml: prefix_prefix: linkml prefix_reference: https://w3id.org/linkml/ - mgnify: - prefix_prefix: mgnify - prefix_reference: https://unknown.to.linter.org/ - MIXS: - prefix_prefix: MIXS - prefix_reference: https://w3id.org/mixs/ nmdc: prefix_prefix: nmdc prefix_reference: https://w3id.org/nmdc/ + nmdc_yaml: + prefix_prefix: nmdc_yaml + prefix_reference: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/ prov: prefix_prefix: prov prefix_reference: http://www.w3.org/ns/prov# - qud: - prefix_prefix: qud - prefix_reference: http://qudt.org/1.1/schema/qudt# rdf: prefix_prefix: rdf prefix_reference: http://www.w3.org/1999/02/22-rdf-syntax-ns# rdfs: prefix_prefix: rdfs prefix_reference: http://www.w3.org/2000/01/rdf-schema# - schema: - prefix_prefix: schema - prefix_reference: http://schema.org/ skos: prefix_prefix: skos prefix_reference: http://www.w3.org/2004/02/skos/core# - wgs84: - prefix_prefix: wgs84 - prefix_reference: http://www.w3.org/2003/01/geo/wgs84_pos# xsd: prefix_prefix: xsd prefix_reference: http://www.w3.org/2001/XMLSchema# + jgi: + prefix_prefix: jgi + prefix_reference: https://unknown.to.linter.org/ + dcterms: + prefix_prefix: dcterms + prefix_reference: http://purl.org/dc/terms/ KEGG.COMPOUND: prefix_prefix: KEGG.COMPOUND prefix_reference: http://identifiers.org/kegg.compound/ - igsnvoc: - prefix_prefix: igsnvoc - prefix_reference: https://igsn.org/voc/v1/ + UniProtKB: + prefix_prefix: UniProtKB + prefix_reference: https://identifiers.org/uniprot/ + biolink: + prefix_prefix: biolink + prefix_reference: https://w3id.org/biolink/vocab/ + gtpo: + prefix_prefix: gtpo + prefix_reference: https://unknown.to.linter.org/ + qud: + prefix_prefix: qud + prefix_reference: http://qudt.org/1.1/schema/qudt# + schema: + prefix_prefix: schema + prefix_reference: http://schema.org/ sio: prefix_prefix: sio prefix_reference: http://semanticscience.org/resource/SIO_ + wgs84: + prefix_prefix: wgs84 + prefix_reference: http://www.w3.org/2003/01/geo/wgs84_pos# shex: prefix_prefix: shex prefix_reference: http://www.w3.org/ns/shex# + GOLD: + prefix_prefix: GOLD + prefix_reference: http://identifiers.org/gold/ CHEBI: prefix_prefix: CHEBI prefix_reference: http://purl.obolibrary.org/obo/CHEBI_ CHMO: prefix_prefix: CHMO prefix_reference: http://purl.obolibrary.org/obo/CHMO_ + MIXS: + prefix_prefix: MIXS + prefix_reference: https://w3id.org/mixs/ + COG: + prefix_prefix: COG + prefix_reference: https://unknown.to.linter.org/ + EC: + prefix_prefix: EC + prefix_reference: https://unknown.to.linter.org/ GO: prefix_prefix: GO prefix_reference: http://purl.obolibrary.org/obo/GO_ - KEGG_PATHWAY: - prefix_prefix: KEGG_PATHWAY - prefix_reference: http://identifiers.org/kegg.pathway/ + KEGG.ORTHOLOGY: + prefix_prefix: KEGG.ORTHOLOGY + prefix_reference: http://identifiers.org/kegg.orthology/ KEGG.REACTION: prefix_prefix: KEGG.REACTION prefix_reference: http://identifiers.org/kegg.reaction/ + KEGG_PATHWAY: + prefix_prefix: KEGG_PATHWAY + prefix_reference: http://identifiers.org/kegg.pathway/ + MetaCyc: + prefix_prefix: MetaCyc + prefix_reference: https://identifiers.org/metacyc.reaction/ + MetaNetX: + prefix_prefix: MetaNetX + prefix_reference: https://unknown.to.linter.org/ RHEA: prefix_prefix: RHEA prefix_reference: http://identifiers.org/rhea/ + RetroRules: + prefix_prefix: RetroRules + prefix_reference: https://unknown.to.linter.org/ SEED: prefix_prefix: SEED prefix_reference: http://identifiers.org/seed/ - KEGG.ORTHOLOGY: - prefix_prefix: KEGG.ORTHOLOGY - prefix_reference: http://identifiers.org/kegg.orthology/ emit_prefixes: - rdf - rdfs @@ -993,20 +975,120 @@ enums: text: soil water_extract_soil: text: water_extract_soil - heat_cool_type_enum: - name: heat_cool_type_enum + occup_document_enum: + name: occup_document_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + sediment_type_enum: + name: sediment_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + biogenous: + text: biogenous + cosmogenous: + text: cosmogenous + hydrogenous: + text: hydrogenous + lithogenous: + text: lithogenous + ext_wall_orient_enum: + name: ext_wall_orient_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + train_line_enum: + name: train_line_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + red: + text: red + green: + text: green + orange: + text: orange + building_setting_enum: + name: building_setting_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + room_samp_pos_enum: + name: room_samp_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + wall_loc_enum: + name: wall_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + samp_md_enum: + name: samp_md_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL + other: + text: other cur_land_use_enum: name: cur_land_use_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -1082,33 +1164,57 @@ enums: text: swamp (permanent or semi-permanent water body dominated by woody plants) crop trees (nuts,fruit,christmas trees,nursery trees): text: crop trees (nuts,fruit,christmas trees,nursery trees) - mech_struc_enum: - name: mech_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus - hcr_geol_age_enum: - name: hcr_geol_age_enum + train_stat_loc_enum: + name: train_stat_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Archean: + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside + door_direct_enum: + name: door_direct_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + floor_water_mold_enum: + name: floor_water_mold_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + hcr_geol_age_enum: + name: hcr_geol_age_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + Archean: text: Archean Cambrian: text: Cambrian @@ -1144,98 +1250,48 @@ enums: text: Triassic other: text: other - ceil_finish_mat_enum: - name: ceil_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - host_sex_enum: - name: host_sex_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - biol_stat_enum: - name: biol_stat_enum + surf_air_cont_enum: + name: surf_air_cont_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - season_use_enum: - name: season_use_enum + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + drawings_enum: + name: drawings_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - ext_window_orient_enum: - name: ext_window_orient_enum + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + door_loc_enum: + name: door_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: north: @@ -1246,86 +1302,22 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - floor_finish_mat_enum: - name: floor_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - tile: - text: tile - wood strip or parquet: - text: wood strip or parquet - carpet: - text: carpet - rug: - text: rug - laminate wood: - text: laminate wood - lineoleum: - text: lineoleum - vinyl composition tile: - text: vinyl composition tile - sheet vinyl: - text: sheet vinyl - stone: - text: stone - bamboo: - text: bamboo - cork: - text: cork - terrazo: - text: terrazo - concrete: - text: concrete - none: - text: none - sealed: - text: sealed - clear finish: - text: clear finish - paint: - text: paint - none or unfinished: - text: none or unfinished - samp_capt_status_enum: - name: samp_capt_status_enum + sr_dep_env_enum: + name: sr_dep_env_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine other: text: other - filter_type_enum: - name: filter_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - room_condt_enum: - name: room_condt_enum + room_condt_enum: + name: room_condt_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: new: @@ -1340,6 +1332,72 @@ enums: text: rupture visible signs of mold/mildew: text: visible signs of mold/mildew + samp_dis_stage_enum: + name: samp_dis_stage_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other + quad_pos_enum: + name: quad_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + samp_floor_enum: + name: samp_floor_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + handidness_enum: + name: handidness_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + profile_position_enum: + name: profile_position_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope vis_media_enum: name: vis_media_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -1358,22 +1416,150 @@ enums: text: equipment 3D scans: text: 3D scans - door_move_enum: - name: door_move_enum + substructure_type_enum: + name: substructure_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + lithology_enum: + name: lithology_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic + other: + text: other + arch_struc_enum: + name: arch_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + door_type_enum: + name: door_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + sr_kerog_type_enum: + name: sr_kerog_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + ceil_cond_enum: + name: ceil_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown + int_wall_cond_enum: + name: int_wall_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture plant_sex_enum: name: plant_sex_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -1436,84 +1622,164 @@ enums: text: Trioecious Unisexual: text: Unisexual - door_type_enum: - name: door_type_enum + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - composite: - text: composite - metal: - text: metal - wooden: - text: wooden - surf_material_enum: - name: surf_material_enum + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat + tidal_stage_enum: + name: tidal_stage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass - metal: - text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile - vinyl: - text: vinyl - wood: - text: wood - tillage_enum: - name: tillage_enum + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + samp_capt_status_enum: + name: samp_capt_status_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - window_cover_enum: - name: window_cover_enum + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample + other: + text: other + sr_lithology_enum: + name: sr_lithology_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - room_connected_enum: - name: room_connected_enum + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + depos_env_enum: + name: depos_env_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic + other: + text: other + sr_geol_age_enum: + name: sr_geol_age_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + hcr_enum: + name: hcr_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir + other: + text: other + room_loc_enum: + name: room_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + room_type_enum: + name: room_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: attic: @@ -1534,160 +1800,138 @@ enums: text: kitchen mail room: text: mail room - office: - text: office + private office: + text: private office + open office: + text: open office stairwell: text: stairwell - train_line_enum: - name: train_line_enum + ',restroom': + text: ',restroom' + lobby: + text: lobby + vestibule: + text: vestibule + mechanical or electrical room: + text: mechanical or electrical room + data center: + text: data center + laboratory_wet: + text: laboratory_wet + laboratory_dry: + text: laboratory_dry + gymnasium: + text: gymnasium + natatorium: + text: natatorium + auditorium: + text: auditorium + lockers: + text: lockers + cafe: + text: cafe + warehouse: + text: warehouse + growth_habit_enum: + name: growth_habit_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - samp_dis_stage_enum: - name: samp_dis_stage_enum + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + door_comp_type_enum: + name: door_comp_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other - profile_position_enum: - name: profile_position_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - build_docs_enum: - name: build_docs_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - sr_lithology_enum: - name: sr_lithology_enum + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic + floor_struc_enum: + name: floor_struc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous - other: - text: other - wall_const_type_enum: - name: wall_const_type_enum + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + window_cover_enum: + name: window_cover_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - oxy_stat_samp_enum: - name: oxy_stat_samp_enum + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + freq_clean_enum: + name: freq_clean_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - aerobic: - text: aerobic - anaerobic: - text: anaerobic + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually other: text: other - plant_growth_med_enum: - name: plant_growth_med_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - other artificial liquid medium: - text: other artificial liquid medium - other artificial solid medium: - text: other artificial solid medium - peat moss: - text: peat moss - perlite: - text: perlite - pumice: - text: pumice - sand: - text: sand - soil: - text: soil - vermiculite: - text: vermiculite - water: - text: water - weekday_enum: - name: weekday_enum + wall_texture_enum: + name: wall_texture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl window_mat_enum: name: window_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -1702,152 +1946,66 @@ enums: text: vinyl wood: text: wood - furniture_enum: - name: furniture_enum + light_type_enum: + name: light_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - ceil_cond_enum: - name: ceil_cond_enum + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + season_use_enum: + name: season_use_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - room_type_enum: - name: room_type_enum + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + soil_horizon_enum: + name: soil_horizon_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - private office: - text: private office - open office: - text: open office - stairwell: - text: stairwell - ',restroom': - text: ',restroom' - lobby: - text: lobby - vestibule: - text: vestibule - mechanical or electrical room: - text: mechanical or electrical room - data center: - text: data center - laboratory_wet: - text: laboratory_wet - laboratory_dry: - text: laboratory_dry - gymnasium: - text: gymnasium - natatorium: - text: natatorium - auditorium: - text: auditorium - lockers: - text: lockers - cafe: - text: cafe - warehouse: - text: warehouse - floor_cond_enum: - name: floor_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - window_horiz_pos_enum: - name: window_horiz_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - left: - text: left - middle: - text: middle - right: - text: right - wall_loc_enum: - name: wall_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - freq_clean_enum: - name: freq_clean_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually - other: - text: other - drainage_class_enum: - name: drainage_class_enum + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost + wall_const_type_enum: + name: wall_const_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - very poorly: - text: very poorly - poorly: - text: poorly - somewhat poorly: - text: somewhat poorly - moderately well: - text: moderately well - well: - text: well - excessively drained: - text: excessively drained + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive shading_device_type_enum: name: shading_device_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -1876,146 +2034,270 @@ enums: text: trellis venetian awning: text: venetian awning - sr_kerog_type_enum: - name: sr_kerog_type_enum + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - shading_device_cond_enum: - name: shading_device_cond_enum + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + water_feat_type_enum: + name: water_feat_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - hcr_enum: - name: hcr_enum + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall + filter_type_enum: + name: filter_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - ceil_type_enum: - name: ceil_type_enum + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + tillage_enum: + name: tillage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - samp_subtype_enum: - name: samp_subtype_enum + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + wall_surf_treatment_enum: + name: wall_surf_treatment_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other - build_occup_type_enum: - name: build_occup_type_enum + painted: + text: painted + wall paper: + text: wall paper + no treatment: + text: no treatment + paneling: + text: paneling + stucco: + text: stucco + fabric: + text: fabric + floor_cond_enum: + name: floor_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - drawings_enum: - name: drawings_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + weekday_enum: + name: weekday_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - substructure_type_enum: - name: substructure_type_enum + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + window_horiz_pos_enum: + name: window_horiz_pos_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement + left: + text: left + middle: + text: middle + right: + text: right + window_type_enum: + name: window_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + mech_struc_enum: + name: mech_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + surf_material_enum: + name: surf_material_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass + metal: + text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + door_cond_enum: + name: door_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + biotic_relationship_enum: + name: biotic_relationship_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + door_move_enum: + name: door_move_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + indoor_space_enum: + name: indoor_space_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator indoor_surf_enum: name: indoor_surf_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2036,76 +2318,126 @@ enums: text: window wall: text: wall - door_loc_enum: - name: door_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - samp_md_enum: - name: samp_md_enum + ceil_texture_enum: + name: ceil_texture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - biotic_relationship_enum: - name: biotic_relationship_enum + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + biol_stat_enum: + name: biol_stat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - surf_air_cont_enum: - name: surf_air_cont_enum + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_cond_enum: + name: window_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - samp_floor_enum: - name: samp_floor_enum + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + hc_produced_enum: + name: hc_produced_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby + Oil: + text: Oil + Gas-Condensate: + text: Gas-Condensate + Gas: + text: Gas + Bitumen: + text: Bitumen + Coalbed Methane: + text: Coalbed Methane + other: + text: other + room_connected_enum: + name: room_connected_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell + door_type_metal_enum: + name: door_type_metal_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate door_type_wood_enum: name: door_type_wood_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2130,204 +2462,54 @@ enums: text: louvered wire gauged: text: wire gauged - door_direct_enum: - name: door_direct_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - door_cond_enum: - name: door_cond_enum + drainage_class_enum: + name: drainage_class_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - soil_horizon_enum: - name: soil_horizon_enum + very poorly: + text: very poorly + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + moderately well: + text: moderately well + well: + text: well + excessively drained: + text: excessively drained + rel_to_oxygen_enum: + name: rel_to_oxygen_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - growth_habit_enum: - name: growth_habit_enum + aerobe: + text: aerobe + anaerobe: + text: anaerobe + facultative: + text: facultative + microaerophilic: + text: microaerophilic + microanaerobe: + text: microanaerobe + obligate aerobe: + text: obligate aerobe + obligate anaerobe: + text: obligate anaerobe + host_sex_enum: + name: host_sex_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate - hc_produced_enum: - name: hc_produced_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Oil: - text: Oil - Gas-Condensate: - text: Gas-Condensate - Gas: - text: Gas - Bitumen: - text: Bitumen - Coalbed Methane: - text: Coalbed Methane - other: - text: other - train_stop_loc_enum: - name: train_stop_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - tidal_stage_enum: - name: tidal_stage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - samp_weather_enum: - name: samp_weather_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - clear sky: - text: clear sky - cloudy: - text: cloudy - foggy: - text: foggy - hail: - text: hail - rain: - text: rain - snow: - text: snow - sleet: - text: sleet - sunny: - text: sunny - windy: - text: windy - floor_water_mold_enum: - name: floor_water_mold_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - train_stat_loc_enum: - name: train_stat_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside - indoor_space_enum: - name: indoor_space_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator - int_wall_cond_enum: - name: int_wall_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - building_setting_enum: - name: building_setting_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - fao_class_enum: - name: fao_class_enum + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + fao_class_enum: + name: fao_class_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: Acrisols: @@ -2382,284 +2564,6 @@ enums: text: Vertisols Yermosols: text: Yermosols - quad_pos_enum: - name: quad_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - door_mat_enum: - name: door_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - aluminum: - text: aluminum - cellular PVC: - text: cellular PVC - engineered plastic: - text: engineered plastic - fiberboard: - text: fiberboard - fiberglass: - text: fiberglass - metal: - text: metal - thermoplastic alloy: - text: thermoplastic alloy - vinyl: - text: vinyl - wood: - text: wood - wood/plastic composite: - text: wood/plastic composite - wall_surf_treatment_enum: - name: wall_surf_treatment_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - painted: - text: painted - wall paper: - text: wall paper - no treatment: - text: no treatment - paneling: - text: paneling - stucco: - text: stucco - fabric: - text: fabric - sediment_type_enum: - name: sediment_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - biogenous: - text: biogenous - cosmogenous: - text: cosmogenous - hydrogenous: - text: hydrogenous - lithogenous: - text: lithogenous - sr_dep_env_enum: - name: sr_dep_env_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - window_cond_enum: - name: window_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - room_loc_enum: - name: room_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - handidness_enum: - name: handidness_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - heat_deliv_loc_enum: - name: heat_deliv_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - samp_collect_point_enum: - name: samp_collect_point_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank - other: - text: other - depos_env_enum: - name: depos_env_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - wall_texture_enum: - name: wall_texture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - ? '' - : text: '' - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - ext_wall_orient_enum: - name: ext_wall_orient_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - water_feat_type_enum: - name: water_feat_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - floor_struc_enum: - name: floor_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed - concrete: - text: concrete - window_vert_pos_enum: - name: window_vert_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high specific_enum: name: specific_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2676,54 +2580,38 @@ enums: text: design photos: text: photos - lithology_enum: - name: lithology_enum + plant_growth_med_enum: + name: plant_growth_med_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + other artificial liquid medium: + text: other artificial liquid medium + other artificial solid medium: + text: other artificial solid medium + peat moss: + text: peat moss + perlite: + text: perlite + pumice: + text: pumice + sand: + text: sand + soil: + text: soil + vermiculite: + text: vermiculite + water: + text: water + oxy_stat_samp_enum: + name: oxy_stat_samp_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + aerobic: + text: aerobic + anaerobic: + text: anaerobic other: text: other - rel_to_oxygen_enum: - name: rel_to_oxygen_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - aerobe: - text: aerobe - anaerobe: - text: anaerobe - facultative: - text: facultative - microaerophilic: - text: microaerophilic - microanaerobe: - text: microanaerobe - obligate aerobe: - text: obligate aerobe - obligate anaerobe: - text: obligate anaerobe window_loc_enum: name: window_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2736,6 +2624,20 @@ enums: text: east west: text: west + shading_device_cond_enum: + name: shading_device_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear organism_count_enum: name: organism_count_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2746,16 +2648,88 @@ enums: text: MPN other: text: other - window_type_enum: - name: window_type_enum + build_docs_enum: + name: build_docs_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + samp_weather_enum: + name: samp_weather_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + clear sky: + text: clear sky + cloudy: + text: cloudy + foggy: + text: foggy + hail: + text: hail + rain: + text: rain + snow: + text: snow + sleet: + text: sleet + sunny: + text: sunny + windy: + text: windy + ext_window_orient_enum: + name: ext_window_orient_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + furniture_enum: + name: furniture_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks gender_restroom_enum: name: gender_restroom_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2772,174 +2746,182 @@ enums: text: male and female unisex: text: unisex - occup_document_enum: - name: occup_document_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - automated count: - text: automated count - estimate: - text: estimate - manual count: - text: manual count - videos: - text: videos - sr_geol_age_enum: - name: sr_geol_age_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - wall_finish_mat_enum: - name: wall_finish_mat_enum + build_occup_type_enum: + name: build_occup_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard metal: text: metal - masonry: - text: masonry - arch_struc_enum: - name: arch_struc_enum + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - light_type_enum: - name: light_type_enum + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + door_mat_enum: + name: door_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - door_type_metal_enum: - name: door_type_metal_enum + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard + fiberglass: + text: fiberglass + metal: + text: metal + thermoplastic alloy: + text: thermoplastic alloy + vinyl: + text: vinyl + wood: + text: wood + wood/plastic composite: + text: wood/plastic composite + ceil_type_enum: + name: ceil_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate - ceil_texture_enum: - name: ceil_texture_enum + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + heat_deliv_loc_enum: + name: heat_deliv_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - rel_samp_loc_enum: - name: rel_samp_loc_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + floor_finish_mat_enum: + name: floor_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - door_comp_type_enum: - name: door_comp_type_enum + tile: + text: tile + wood strip or parquet: + text: wood strip or parquet + carpet: + text: carpet + rug: + text: rug + laminate wood: + text: laminate wood + lineoleum: + text: lineoleum + vinyl composition tile: + text: vinyl composition tile + sheet vinyl: + text: sheet vinyl + stone: + text: stone + bamboo: + text: bamboo + cork: + text: cork + terrazo: + text: terrazo + concrete: + text: concrete + none: + text: none + sealed: + text: sealed + clear finish: + text: clear finish + paint: + text: paint + none or unfinished: + text: none or unfinished + samp_subtype_enum: + name: samp_subtype_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable + other: + text: other slots: zinc: name: zinc @@ -16784,45 +16766,45 @@ slots: slot_uri: MIXS:0000156 multivalued: false range: QuantityValue - has numeric value: - name: has numeric value + has raw value: + name: has raw value from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + string_serialization: '{has numeric value} {has unit}' owner: QuantityValue - range: double - core field: - name: core field - description: basic fields + investigation field: + name: investigation field + description: field describing aspect of the investigation/study to which the sample + belongs from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc abstract: true + has unit: + name: has unit + description: Example "m" + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + owner: QuantityValue sequencing field: name: sequencing field from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc abstract: true - environment field: - name: environment field - description: field describing environmental aspect of a sample + core field: + name: core field + description: basic fields from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc abstract: true - has raw value: - name: has raw value + has numeric value: + name: has numeric value from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - string_serialization: '{has numeric value} {has unit}' owner: QuantityValue - has unit: - name: has unit - description: Example "m" + range: double + environment field: + name: environment field + description: field describing environmental aspect of a sample from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - owner: QuantityValue + abstract: true nucleic acid sequence source field: name: nucleic acid sequence source field from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc abstract: true - investigation field: - name: investigation field - description: field describing aspect of the investigation/study to which the sample - belongs - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - abstract: true has_part: name: has_part from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc diff --git a/nmdc_schema/nmdc_schema_merged.yaml b/nmdc_schema/nmdc_schema_merged.yaml index 0c7abe5ad0..2ab4a1241d 100644 --- a/nmdc_schema/nmdc_schema_merged.yaml +++ b/nmdc_schema/nmdc_schema_merged.yaml @@ -23,141 +23,123 @@ id: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema version: v7.4.13 license: https://creativecommons.org/publicdomain/zero/1.0/ prefixes: - COG: - prefix_prefix: COG - prefix_reference: https://unknown.to.linter.org/ - EC: - prefix_prefix: EC - prefix_reference: https://unknown.to.linter.org/ EFO: prefix_prefix: EFO prefix_reference: http://identifiers.org/efo/ - GOLD: - prefix_prefix: GOLD - prefix_reference: http://identifiers.org/gold/ - IMG.TAXON: - prefix_prefix: IMG.TAXON - prefix_reference: http://identifiers.org/img.taxon/ ISA: prefix_prefix: ISA prefix_reference: https://unknown.to.linter.org/ - MS: - prefix_prefix: MS - prefix_reference: http://purl.obolibrary.org/obo/MS_ - MetaCyc: - prefix_prefix: MetaCyc - prefix_reference: https://identifiers.org/metacyc.reaction/ - MetaNetX: - prefix_prefix: MetaNetX - prefix_reference: https://unknown.to.linter.org/ NCIT: prefix_prefix: NCIT prefix_reference: http://purl.obolibrary.org/obo/NCIT_ OBI: prefix_prefix: OBI prefix_reference: http://purl.obolibrary.org/obo/OBI_ - RetroRules: - prefix_prefix: RetroRules - prefix_reference: https://unknown.to.linter.org/ - UniProtKB: - prefix_prefix: UniProtKB - prefix_reference: https://identifiers.org/uniprot/ bare: prefix_prefix: bare prefix_reference: https://unknown.to.linter.org/ - biolink: - prefix_prefix: biolink - prefix_reference: https://w3id.org/biolink/vocab/ - dcterms: - prefix_prefix: dcterms - prefix_reference: http://purl.org/dc/terms/ - emsl: - prefix_prefix: emsl - prefix_reference: https://unknown.to.linter.org/ - gtpo: - prefix_prefix: gtpo - prefix_reference: https://unknown.to.linter.org/ - igsn: - prefix_prefix: igsn - prefix_reference: https://app.geosamples.org/sample/igsn/ - insdc.srs: - prefix_prefix: insdc.srs - prefix_reference: https://unknown.to.linter.org/ - jgi: - prefix_prefix: jgi - prefix_reference: https://unknown.to.linter.org/ linkml: prefix_prefix: linkml prefix_reference: https://w3id.org/linkml/ - mgnify: - prefix_prefix: mgnify - prefix_reference: https://unknown.to.linter.org/ - MIXS: - prefix_prefix: MIXS - prefix_reference: https://w3id.org/mixs/ nmdc: prefix_prefix: nmdc prefix_reference: https://w3id.org/nmdc/ + nmdc_yaml: + prefix_prefix: nmdc_yaml + prefix_reference: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/ prov: prefix_prefix: prov prefix_reference: http://www.w3.org/ns/prov# - qud: - prefix_prefix: qud - prefix_reference: http://qudt.org/1.1/schema/qudt# rdf: prefix_prefix: rdf prefix_reference: http://www.w3.org/1999/02/22-rdf-syntax-ns# rdfs: prefix_prefix: rdfs prefix_reference: http://www.w3.org/2000/01/rdf-schema# - schema: - prefix_prefix: schema - prefix_reference: http://schema.org/ skos: prefix_prefix: skos prefix_reference: http://www.w3.org/2004/02/skos/core# - wgs84: - prefix_prefix: wgs84 - prefix_reference: http://www.w3.org/2003/01/geo/wgs84_pos# xsd: prefix_prefix: xsd prefix_reference: http://www.w3.org/2001/XMLSchema# + jgi: + prefix_prefix: jgi + prefix_reference: https://unknown.to.linter.org/ + dcterms: + prefix_prefix: dcterms + prefix_reference: http://purl.org/dc/terms/ KEGG.COMPOUND: prefix_prefix: KEGG.COMPOUND prefix_reference: http://identifiers.org/kegg.compound/ - igsnvoc: - prefix_prefix: igsnvoc - prefix_reference: https://igsn.org/voc/v1/ + UniProtKB: + prefix_prefix: UniProtKB + prefix_reference: https://identifiers.org/uniprot/ + biolink: + prefix_prefix: biolink + prefix_reference: https://w3id.org/biolink/vocab/ + gtpo: + prefix_prefix: gtpo + prefix_reference: https://unknown.to.linter.org/ + qud: + prefix_prefix: qud + prefix_reference: http://qudt.org/1.1/schema/qudt# + schema: + prefix_prefix: schema + prefix_reference: http://schema.org/ sio: prefix_prefix: sio prefix_reference: http://semanticscience.org/resource/SIO_ + wgs84: + prefix_prefix: wgs84 + prefix_reference: http://www.w3.org/2003/01/geo/wgs84_pos# shex: prefix_prefix: shex prefix_reference: http://www.w3.org/ns/shex# + GOLD: + prefix_prefix: GOLD + prefix_reference: http://identifiers.org/gold/ CHEBI: prefix_prefix: CHEBI prefix_reference: http://purl.obolibrary.org/obo/CHEBI_ CHMO: prefix_prefix: CHMO prefix_reference: http://purl.obolibrary.org/obo/CHMO_ + MIXS: + prefix_prefix: MIXS + prefix_reference: https://w3id.org/mixs/ + COG: + prefix_prefix: COG + prefix_reference: https://unknown.to.linter.org/ + EC: + prefix_prefix: EC + prefix_reference: https://unknown.to.linter.org/ GO: prefix_prefix: GO prefix_reference: http://purl.obolibrary.org/obo/GO_ - KEGG_PATHWAY: - prefix_prefix: KEGG_PATHWAY - prefix_reference: http://identifiers.org/kegg.pathway/ + KEGG.ORTHOLOGY: + prefix_prefix: KEGG.ORTHOLOGY + prefix_reference: http://identifiers.org/kegg.orthology/ KEGG.REACTION: prefix_prefix: KEGG.REACTION prefix_reference: http://identifiers.org/kegg.reaction/ + KEGG_PATHWAY: + prefix_prefix: KEGG_PATHWAY + prefix_reference: http://identifiers.org/kegg.pathway/ + MetaCyc: + prefix_prefix: MetaCyc + prefix_reference: https://identifiers.org/metacyc.reaction/ + MetaNetX: + prefix_prefix: MetaNetX + prefix_reference: https://unknown.to.linter.org/ RHEA: prefix_prefix: RHEA prefix_reference: http://identifiers.org/rhea/ + RetroRules: + prefix_prefix: RetroRules + prefix_reference: https://unknown.to.linter.org/ SEED: prefix_prefix: SEED prefix_reference: http://identifiers.org/seed/ - KEGG.ORTHOLOGY: - prefix_prefix: KEGG.ORTHOLOGY - prefix_reference: http://identifiers.org/kegg.orthology/ emit_prefixes: - rdf - rdfs @@ -198,22 +180,22 @@ subsets: mixs_environmental_triad: name: mixs_environmental_triad title: MIxS Environmental Triad - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml mixs extension: name: mixs extension - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml checklist: name: checklist description: A MIxS checklist. These can be combined with packages - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml package: name: package description: A MIxS package. These can be combined with checklists - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml checklist_package_combination: name: checklist_package_combination description: A combination of a checklist and a package - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml types: bytes: name: bytes @@ -993,23 +975,123 @@ enums: text: soil water_extract_soil: text: water_extract_soil - heat_cool_type_enum: - name: heat_cool_type_enum - from_schema: https://microbiomedata/schema/mixs + occup_document_enum: + name: occup_document_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + sediment_type_enum: + name: sediment_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + biogenous: + text: biogenous + cosmogenous: + text: cosmogenous + hydrogenous: + text: hydrogenous + lithogenous: + text: lithogenous + ext_wall_orient_enum: + name: ext_wall_orient_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + train_line_enum: + name: train_line_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + red: + text: red + green: + text: green + orange: + text: orange + building_setting_enum: + name: building_setting_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + room_samp_pos_enum: + name: room_samp_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + wall_loc_enum: + name: wall_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + samp_md_enum: + name: samp_md_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL + other: + text: other cur_land_use_enum: name: cur_land_use_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: cities: text: cities @@ -1082,41 +1164,65 @@ enums: text: swamp (permanent or semi-permanent water body dominated by woody plants) crop trees (nuts,fruit,christmas trees,nursery trees): text: crop trees (nuts,fruit,christmas trees,nursery trees) - mech_struc_enum: - name: mech_struc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus - hcr_geol_age_enum: - name: hcr_geol_age_enum - from_schema: https://microbiomedata/schema/mixs + train_stat_loc_enum: + name: train_stat_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside + door_direct_enum: + name: door_direct_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + floor_water_mold_enum: + name: floor_water_mold_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + hcr_geol_age_enum: + name: hcr_geol_age_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: text: Cretaceous Devonian: text: Devonian @@ -1144,99 +1250,49 @@ enums: text: Triassic other: text: other - ceil_finish_mat_enum: - name: ceil_finish_mat_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - host_sex_enum: - name: host_sex_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - biol_stat_enum: - name: biol_stat_enum - from_schema: https://microbiomedata/schema/mixs + surf_air_cont_enum: + name: surf_air_cont_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - season_use_enum: - name: season_use_enum - from_schema: https://microbiomedata/schema/mixs + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + drawings_enum: + name: drawings_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - ext_window_orient_enum: - name: ext_window_orient_enum - from_schema: https://microbiomedata/schema/mixs + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + door_loc_enum: + name: door_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: north: text: north @@ -1246,87 +1302,23 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - floor_finish_mat_enum: - name: floor_finish_mat_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - tile: - text: tile - wood strip or parquet: - text: wood strip or parquet - carpet: - text: carpet - rug: - text: rug - laminate wood: - text: laminate wood - lineoleum: - text: lineoleum - vinyl composition tile: - text: vinyl composition tile - sheet vinyl: - text: sheet vinyl - stone: - text: stone - bamboo: - text: bamboo - cork: - text: cork - terrazo: - text: terrazo - concrete: - text: concrete - none: - text: none - sealed: - text: sealed - clear finish: - text: clear finish - paint: - text: paint - none or unfinished: - text: none or unfinished - samp_capt_status_enum: - name: samp_capt_status_enum - from_schema: https://microbiomedata/schema/mixs + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine other: text: other - filter_type_enum: - name: filter_type_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - room_condt_enum: - name: room_condt_enum - from_schema: https://microbiomedata/schema/mixs + room_condt_enum: + name: room_condt_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: new: text: new @@ -1340,9 +1332,75 @@ enums: text: rupture visible signs of mold/mildew: text: visible signs of mold/mildew + samp_dis_stage_enum: + name: samp_dis_stage_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other + quad_pos_enum: + name: quad_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + samp_floor_enum: + name: samp_floor_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + handidness_enum: + name: handidness_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + profile_position_enum: + name: profile_position_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope vis_media_enum: name: vis_media_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: photos: text: photos @@ -1358,25 +1416,153 @@ enums: text: equipment 3D scans: text: 3D scans - door_move_enum: - name: door_move_enum - from_schema: https://microbiomedata/schema/mixs + substructure_type_enum: + name: substructure_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + lithology_enum: + name: lithology_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic + other: + text: other + arch_struc_enum: + name: arch_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + door_type_enum: + name: door_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + sr_kerog_type_enum: + name: sr_kerog_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + ceil_cond_enum: + name: ceil_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown + int_wall_cond_enum: + name: int_wall_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture plant_sex_enum: name: plant_sex_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: Androdioecious: text: Androdioecious @@ -1436,85 +1622,165 @@ enums: text: Trioecious Unisexual: text: Unisexual - door_type_enum: - name: door_type_enum - from_schema: https://microbiomedata/schema/mixs + rel_samp_loc_enum: + name: rel_samp_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - composite: - text: composite - metal: - text: metal - wooden: - text: wooden - surf_material_enum: - name: surf_material_enum - from_schema: https://microbiomedata/schema/mixs + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat + tidal_stage_enum: + name: tidal_stage_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass - metal: - text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile - vinyl: - text: vinyl - wood: - text: wood - tillage_enum: - name: tillage_enum - from_schema: https://microbiomedata/schema/mixs + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - window_cover_enum: - name: window_cover_enum - from_schema: https://microbiomedata/schema/mixs + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample + other: + text: other + sr_lithology_enum: + name: sr_lithology_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - room_connected_enum: - name: room_connected_enum - from_schema: https://microbiomedata/schema/mixs + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + depos_env_enum: + name: depos_env_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic + other: + text: other + sr_geol_age_enum: + name: sr_geol_age_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + hcr_enum: + name: hcr_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir + other: + text: other + room_loc_enum: + name: room_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + room_type_enum: + name: room_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: attic: text: attic @@ -1534,97 +1800,199 @@ enums: text: kitchen mail room: text: mail room - office: - text: office + private office: + text: private office + open office: + text: open office stairwell: text: stairwell - train_line_enum: - name: train_line_enum - from_schema: https://microbiomedata/schema/mixs + ',restroom': + text: ',restroom' + lobby: + text: lobby + vestibule: + text: vestibule + mechanical or electrical room: + text: mechanical or electrical room + data center: + text: data center + laboratory_wet: + text: laboratory_wet + laboratory_dry: + text: laboratory_dry + gymnasium: + text: gymnasium + natatorium: + text: natatorium + auditorium: + text: auditorium + lockers: + text: lockers + cafe: + text: cafe + warehouse: + text: warehouse + growth_habit_enum: + name: growth_habit_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - samp_dis_stage_enum: - name: samp_dis_stage_enum - from_schema: https://microbiomedata/schema/mixs + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + door_comp_type_enum: + name: door_comp_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other - profile_position_enum: - name: profile_position_enum - from_schema: https://microbiomedata/schema/mixs + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic + floor_struc_enum: + name: floor_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - build_docs_enum: - name: build_docs_enum - from_schema: https://microbiomedata/schema/mixs + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + window_cover_enum: + name: window_cover_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - sr_lithology_enum: - name: sr_lithology_enum - from_schema: https://microbiomedata/schema/mixs + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + freq_clean_enum: + name: freq_clean_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually other: text: other + wall_texture_enum: + name: wall_texture_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + window_mat_enum: + name: window_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + clad: + text: clad + fiberglass: + text: fiberglass + metal: + text: metal + vinyl: + text: vinyl + wood: + text: wood + light_type_enum: + name: light_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + season_use_enum: + name: season_use_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + soil_horizon_enum: + name: soil_horizon_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost wall_const_type_enum: name: wall_const_type_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: frame construction: text: frame construction @@ -1638,151 +2006,131 @@ enums: text: modified fire resistive fire resistive: text: fire resistive - oxy_stat_samp_enum: - name: oxy_stat_samp_enum - from_schema: https://microbiomedata/schema/mixs + shading_device_type_enum: + name: shading_device_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - aerobic: - text: aerobic - anaerobic: - text: anaerobic - other: - text: other - plant_growth_med_enum: - name: plant_growth_med_enum - from_schema: https://microbiomedata/schema/mixs + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning + wall_finish_mat_enum: + name: wall_finish_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - other artificial liquid medium: - text: other artificial liquid medium - other artificial solid medium: - text: other artificial solid medium - peat moss: - text: peat moss - perlite: - text: perlite - pumice: - text: pumice - sand: - text: sand - soil: - text: soil - vermiculite: - text: vermiculite - water: - text: water - weekday_enum: - name: weekday_enum - from_schema: https://microbiomedata/schema/mixs + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + water_feat_type_enum: + name: water_feat_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - window_mat_enum: - name: window_mat_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - clad: - text: clad - fiberglass: - text: fiberglass - metal: - text: metal - vinyl: - text: vinyl - wood: - text: wood - furniture_enum: - name: furniture_enum - from_schema: https://microbiomedata/schema/mixs + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall + filter_type_enum: + name: filter_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - ceil_cond_enum: - name: ceil_cond_enum - from_schema: https://microbiomedata/schema/mixs + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + tillage_enum: + name: tillage_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - room_type_enum: - name: room_type_enum - from_schema: https://microbiomedata/schema/mixs + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + wall_surf_treatment_enum: + name: wall_surf_treatment_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - private office: - text: private office - open office: - text: open office - stairwell: - text: stairwell - ',restroom': - text: ',restroom' - lobby: - text: lobby - vestibule: - text: vestibule - mechanical or electrical room: - text: mechanical or electrical room - data center: - text: data center - laboratory_wet: - text: laboratory_wet - laboratory_dry: - text: laboratory_dry - gymnasium: - text: gymnasium - natatorium: - text: natatorium - auditorium: - text: auditorium - lockers: - text: lockers - cafe: - text: cafe - warehouse: - text: warehouse + painted: + text: painted + wall paper: + text: wall paper + no treatment: + text: no treatment + paneling: + text: paneling + stucco: + text: stucco + fabric: + text: fabric floor_cond_enum: name: floor_cond_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: new: text: new @@ -1794,9 +2142,27 @@ enums: text: damaged rupture: text: rupture + weekday_enum: + name: weekday_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday window_horiz_pos_enum: name: window_horiz_pos_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: left: text: left @@ -1804,95 +2170,75 @@ enums: text: middle right: text: right - wall_loc_enum: - name: wall_loc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - freq_clean_enum: - name: freq_clean_enum - from_schema: https://microbiomedata/schema/mixs + window_type_enum: + name: window_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually - other: - text: other - drainage_class_enum: - name: drainage_class_enum - from_schema: https://microbiomedata/schema/mixs + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + mech_struc_enum: + name: mech_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - very poorly: - text: very poorly - poorly: - text: poorly - somewhat poorly: - text: somewhat poorly - moderately well: - text: moderately well - well: - text: well - excessively drained: - text: excessively drained - shading_device_type_enum: - name: shading_device_type_enum - from_schema: https://microbiomedata/schema/mixs + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + surf_material_enum: + name: surf_material_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning - sr_kerog_type_enum: - name: sr_kerog_type_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://microbiomedata/schema/mixs + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass + metal: + text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + door_cond_enum: + name: door_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: damaged: text: damaged @@ -1904,121 +2250,57 @@ enums: text: rupture visible wear: text: visible wear - hcr_enum: - name: hcr_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - ceil_type_enum: - name: ceil_type_enum - from_schema: https://microbiomedata/schema/mixs + biotic_relationship_enum: + name: biotic_relationship_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - samp_subtype_enum: - name: samp_subtype_enum - from_schema: https://microbiomedata/schema/mixs + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + door_move_enum: + name: door_move_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other - build_occup_type_enum: - name: build_occup_type_enum - from_schema: https://microbiomedata/schema/mixs + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + indoor_space_enum: + name: indoor_space_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: + bedroom: + text: bedroom office: text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - drawings_enum: - name: drawings_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - substructure_type_enum: - name: substructure_type_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator indoor_surf_enum: name: indoor_surf_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: cabinet: text: cabinet @@ -2036,113 +2318,59 @@ enums: text: window wall: text: wall - door_loc_enum: - name: door_loc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - samp_md_enum: - name: samp_md_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - biotic_relationship_enum: - name: biotic_relationship_enum - from_schema: https://microbiomedata/schema/mixs + ceil_texture_enum: + name: ceil_texture_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - surf_air_cont_enum: - name: surf_air_cont_enum - from_schema: https://microbiomedata/schema/mixs + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + biol_stat_enum: + name: biol_stat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - samp_floor_enum: - name: samp_floor_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby - door_type_wood_enum: - name: door_type_wood_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - door_direct_enum: - name: door_direct_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - door_cond_enum: - name: door_cond_enum - from_schema: https://microbiomedata/schema/mixs + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_cond_enum: + name: window_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: damaged: text: damaged @@ -2154,39 +2382,9 @@ enums: text: rupture visible wear: text: visible wear - soil_horizon_enum: - name: soil_horizon_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - growth_habit_enum: - name: growth_habit_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate hc_produced_enum: name: hc_produced_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: Oil: text: Oil @@ -2200,138 +2398,122 @@ enums: text: Coalbed Methane other: text: other - train_stop_loc_enum: - name: train_stop_loc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - tidal_stage_enum: - name: tidal_stage_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - samp_weather_enum: - name: samp_weather_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - clear sky: - text: clear sky - cloudy: - text: cloudy - foggy: - text: foggy - hail: - text: hail - rain: - text: rain - snow: - text: snow - sleet: - text: sleet - sunny: - text: sunny - windy: - text: windy - floor_water_mold_enum: - name: floor_water_mold_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - train_stat_loc_enum: - name: train_stat_loc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside - indoor_space_enum: - name: indoor_space_enum - from_schema: https://microbiomedata/schema/mixs + room_connected_enum: + name: room_connected_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bedroom: - text: bedroom - office: - text: office + attic: + text: attic bathroom: text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway + closet: + text: closet + conference room: + text: conference room elevator: text: elevator - int_wall_cond_enum: - name: int_wall_cond_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - building_setting_enum: - name: building_setting_enum - from_schema: https://microbiomedata/schema/mixs + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell + door_type_metal_enum: + name: door_type_metal_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - fao_class_enum: - name: fao_class_enum - from_schema: https://microbiomedata/schema/mixs + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate + door_type_wood_enum: + name: door_type_wood_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Acrisols: - text: Acrisols + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + drainage_class_enum: + name: drainage_class_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + very poorly: + text: very poorly + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + moderately well: + text: moderately well + well: + text: well + excessively drained: + text: excessively drained + rel_to_oxygen_enum: + name: rel_to_oxygen_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + aerobe: + text: aerobe + anaerobe: + text: anaerobe + facultative: + text: facultative + microaerophilic: + text: microaerophilic + microanaerobe: + text: microanaerobe + obligate aerobe: + text: obligate aerobe + obligate anaerobe: + text: obligate anaerobe + host_sex_enum: + name: host_sex_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + fao_class_enum: + name: fao_class_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Acrisols: + text: Acrisols Andosols: text: Andosols Arenosols: @@ -2382,287 +2564,9 @@ enums: text: Vertisols Yermosols: text: Yermosols - quad_pos_enum: - name: quad_pos_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - door_mat_enum: - name: door_mat_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - aluminum: - text: aluminum - cellular PVC: - text: cellular PVC - engineered plastic: - text: engineered plastic - fiberboard: - text: fiberboard - fiberglass: - text: fiberglass - metal: - text: metal - thermoplastic alloy: - text: thermoplastic alloy - vinyl: - text: vinyl - wood: - text: wood - wood/plastic composite: - text: wood/plastic composite - wall_surf_treatment_enum: - name: wall_surf_treatment_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - painted: - text: painted - wall paper: - text: wall paper - no treatment: - text: no treatment - paneling: - text: paneling - stucco: - text: stucco - fabric: - text: fabric - sediment_type_enum: - name: sediment_type_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - biogenous: - text: biogenous - cosmogenous: - text: cosmogenous - hydrogenous: - text: hydrogenous - lithogenous: - text: lithogenous - sr_dep_env_enum: - name: sr_dep_env_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - window_cond_enum: - name: window_cond_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - room_loc_enum: - name: room_loc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - handidness_enum: - name: handidness_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - heat_deliv_loc_enum: - name: heat_deliv_loc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - samp_collect_point_enum: - name: samp_collect_point_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank - other: - text: other - depos_env_enum: - name: depos_env_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - wall_texture_enum: - name: wall_texture_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - ? '' - : text: '' - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - ext_wall_orient_enum: - name: ext_wall_orient_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - water_feat_type_enum: - name: water_feat_type_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - floor_struc_enum: - name: floor_struc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed - concrete: - text: concrete - window_vert_pos_enum: - name: window_vert_pos_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high specific_enum: name: specific_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: operation: text: operation @@ -2675,58 +2579,42 @@ enums: design: text: design photos: - text: photos - lithology_enum: - name: lithology_enum - from_schema: https://microbiomedata/schema/mixs + text: photos + plant_growth_med_enum: + name: plant_growth_med_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + other artificial liquid medium: + text: other artificial liquid medium + other artificial solid medium: + text: other artificial solid medium + peat moss: + text: peat moss + perlite: + text: perlite + pumice: + text: pumice + sand: + text: sand + soil: + text: soil + vermiculite: + text: vermiculite + water: + text: water + oxy_stat_samp_enum: + name: oxy_stat_samp_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + aerobic: + text: aerobic + anaerobic: + text: anaerobic other: text: other - rel_to_oxygen_enum: - name: rel_to_oxygen_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - aerobe: - text: aerobe - anaerobe: - text: anaerobe - facultative: - text: facultative - microaerophilic: - text: microaerophilic - microanaerobe: - text: microanaerobe - obligate aerobe: - text: obligate aerobe - obligate anaerobe: - text: obligate anaerobe window_loc_enum: name: window_loc_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: north: text: north @@ -2736,9 +2624,23 @@ enums: text: east west: text: west + shading_device_cond_enum: + name: shading_device_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear organism_count_enum: name: organism_count_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: ATP: text: ATP @@ -2746,19 +2648,91 @@ enums: text: MPN other: text: other - window_type_enum: - name: window_type_enum - from_schema: https://microbiomedata/schema/mixs + build_docs_enum: + name: build_docs_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + samp_weather_enum: + name: samp_weather_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + clear sky: + text: clear sky + cloudy: + text: cloudy + foggy: + text: foggy + hail: + text: hail + rain: + text: rain + snow: + text: snow + sleet: + text: sleet + sunny: + text: sunny + windy: + text: windy + ext_window_orient_enum: + name: ext_window_orient_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + furniture_enum: + name: furniture_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks gender_restroom_enum: name: gender_restroom_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: all gender: text: all gender @@ -2772,174 +2746,182 @@ enums: text: male and female unisex: text: unisex - occup_document_enum: - name: occup_document_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - automated count: - text: automated count - estimate: - text: estimate - manual count: - text: manual count - videos: - text: videos - sr_geol_age_enum: - name: sr_geol_age_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://microbiomedata/schema/mixs + build_occup_type_enum: + name: build_occup_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate wood: text: wood + heat_cool_type_enum: + name: heat_cool_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + door_mat_enum: + name: door_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard + fiberglass: + text: fiberglass metal: text: metal - masonry: - text: masonry - arch_struc_enum: - name: arch_struc_enum - from_schema: https://microbiomedata/schema/mixs + thermoplastic alloy: + text: thermoplastic alloy + vinyl: + text: vinyl + wood: + text: wood + wood/plastic composite: + text: wood/plastic composite + ceil_type_enum: + name: ceil_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - light_type_enum: - name: light_type_enum - from_schema: https://microbiomedata/schema/mixs + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + heat_deliv_loc_enum: + name: heat_deliv_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights + north: + text: north + south: + text: south + east: + text: east + west: + text: west + floor_finish_mat_enum: + name: floor_finish_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + tile: + text: tile + wood strip or parquet: + text: wood strip or parquet + carpet: + text: carpet + rug: + text: rug + laminate wood: + text: laminate wood + lineoleum: + text: lineoleum + vinyl composition tile: + text: vinyl composition tile + sheet vinyl: + text: sheet vinyl + stone: + text: stone + bamboo: + text: bamboo + cork: + text: cork + terrazo: + text: terrazo + concrete: + text: concrete none: text: none - door_type_metal_enum: - name: door_type_metal_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate - ceil_texture_enum: - name: ceil_texture_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - rel_samp_loc_enum: - name: rel_samp_loc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - door_comp_type_enum: - name: door_comp_type_enum - from_schema: https://microbiomedata/schema/mixs + sealed: + text: sealed + clear finish: + text: clear finish + paint: + text: paint + none or unfinished: + text: none or unfinished + samp_subtype_enum: + name: samp_subtype_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable + other: + text: other slots: zinc: name: zinc @@ -5802,7 +5784,7 @@ slots: title: absolute air humidity examples: - value: 9 gram per gram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - absolute air humidity is_a: core field @@ -5825,7 +5807,7 @@ slots: title: secondary and tertiary recovery methods and start date examples: - value: Polymer Addition;2018-06-21T14:30Z - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - secondary and tertiary recovery methods and start date is_a: core field @@ -5846,7 +5828,7 @@ slots: title: additional info examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - additional info is_a: core field @@ -5867,7 +5849,7 @@ slots: title: address examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - address is_a: core field @@ -5889,7 +5871,7 @@ slots: title: adjacent rooms examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - adjacent rooms is_a: core field @@ -5912,7 +5894,7 @@ slots: title: aerospace structure examples: - value: plane - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - aerospace structure is_a: core field @@ -5936,7 +5918,7 @@ slots: title: history/agrochemical additions examples: - value: roundup;5 milligram per liter;2018-06-21 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/agrochemical additions is_a: core field @@ -5962,7 +5944,7 @@ slots: title: air particulate matter concentration examples: - value: PM2.5;10 microgram per cubic meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - air particulate matter concentration is_a: core field @@ -5986,7 +5968,7 @@ slots: title: air temperature examples: - value: 20 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - air temperature is_a: core field @@ -6012,7 +5994,7 @@ slots: title: air temperature regimen examples: - value: 25 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - air temperature regimen is_a: core field @@ -6036,7 +6018,7 @@ slots: title: extreme_unusual_properties/Al saturation examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - extreme_unusual_properties/Al saturation is_a: core field @@ -6056,7 +6038,7 @@ slots: title: extreme_unusual_properties/Al saturation method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - extreme_unusual_properties/Al saturation method is_a: core field @@ -6081,7 +6063,7 @@ slots: title: alkalinity examples: - value: 50 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - alkalinity is_a: core field @@ -6101,7 +6083,7 @@ slots: title: alkalinity method examples: - value: titration - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - alkalinity method is_a: core field @@ -6125,7 +6107,7 @@ slots: title: alkyl diethers examples: - value: 0.005 mole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - alkyl diethers is_a: core field @@ -6147,7 +6129,7 @@ slots: title: altitude examples: - value: 100 meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - altitude is_a: environment field @@ -6170,7 +6152,7 @@ slots: title: aminopeptidase activity examples: - value: 0.269 mole per liter per hour - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - aminopeptidase activity is_a: core field @@ -6193,7 +6175,7 @@ slots: title: ammonium examples: - value: 1.5 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ammonium is_a: core field @@ -6217,7 +6199,7 @@ slots: title: amount of light examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - amount of light is_a: core field @@ -6239,7 +6221,7 @@ slots: title: ancestral data examples: - value: A/3*B - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ancestral data is_a: core field @@ -6264,7 +6246,7 @@ slots: title: mean annual precipitation examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mean annual precipitation is_a: core field @@ -6287,7 +6269,7 @@ slots: title: mean annual temperature examples: - value: 12.5 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mean annual temperature is_a: core field @@ -6314,7 +6296,7 @@ slots: title: antibiotic regimen examples: - value: penicillin;5 milligram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - antibiotic regimen is_a: core field @@ -6340,7 +6322,7 @@ slots: title: API gravity examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - API gravity is_a: core field @@ -6361,7 +6343,7 @@ slots: title: architectural structure examples: - value: shed - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - architectural structure is_a: core field @@ -6388,7 +6370,7 @@ slots: title: aromatics wt% examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - aromatics wt% is_a: core field @@ -6416,7 +6398,7 @@ slots: title: asphaltenes wt% examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - asphaltenes wt% is_a: core field @@ -6437,7 +6419,7 @@ slots: title: atmospheric data examples: - value: wind speed;9 knots - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - atmospheric data is_a: core field @@ -6462,7 +6444,7 @@ slots: title: average dew point examples: - value: 25.5 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - average dew point is_a: core field @@ -6483,7 +6465,7 @@ slots: title: average daily occupancy examples: - value: '2' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - average daily occupancy is_a: core field @@ -6507,7 +6489,7 @@ slots: title: average temperature examples: - value: 12.5 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - average temperature is_a: core field @@ -6530,7 +6512,7 @@ slots: title: bacterial production examples: - value: 5 milligram per cubic meter per day - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - bacterial production is_a: core field @@ -6553,7 +6535,7 @@ slots: title: bacterial respiration examples: - value: 300 micromole oxygen per liter per hour - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - bacterial respiration is_a: core field @@ -6576,7 +6558,7 @@ slots: title: bacterial carbon production examples: - value: 2.53 microgram per liter per hour - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - bacterial carbon production is_a: core field @@ -6600,7 +6582,7 @@ slots: title: barometric pressure examples: - value: 5 millibar - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - barometric pressure is_a: core field @@ -6620,7 +6602,7 @@ slots: title: basin name examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - basin name is_a: core field @@ -6641,7 +6623,7 @@ slots: title: bathroom count examples: - value: '1' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - bathroom count is_a: core field @@ -6661,7 +6643,7 @@ slots: title: bedroom count examples: - value: '2' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - bedroom count is_a: core field @@ -6684,7 +6666,7 @@ slots: title: benzene examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - benzene is_a: core field @@ -6709,7 +6691,7 @@ slots: title: biochemical oxygen demand examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - biochemical oxygen demand is_a: core field @@ -6730,7 +6712,7 @@ slots: title: biocide administration examples: - value: ALPHA 1427;Baker Hughes;2008-01-23 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - biocide administration is_a: core field @@ -6756,7 +6738,7 @@ slots: title: biocide administration method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - biocide administration method is_a: core field @@ -6777,7 +6759,7 @@ slots: title: biological status examples: - value: natural - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - biological status is_a: core field @@ -6801,7 +6783,7 @@ slots: title: biomass examples: - value: total;20 gram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - biomass is_a: core field @@ -6823,7 +6805,7 @@ slots: title: biotic regimen examples: - value: sample inoculated with Rhizobium spp. Culture - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - biotic regimen is_a: core field @@ -6844,7 +6826,7 @@ slots: title: observed biotic relationship examples: - value: free living - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - observed biotic relationship is_a: nucleic acid sequence source field @@ -6867,7 +6849,7 @@ slots: title: bishomohopanol examples: - value: 14 microgram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - bishomohopanol is_a: core field @@ -6890,7 +6872,7 @@ slots: title: host blood pressure diastolic examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host blood pressure diastolic is_a: core field @@ -6913,7 +6895,7 @@ slots: title: host blood pressure systolic examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host blood pressure systolic is_a: core field @@ -6936,7 +6918,7 @@ slots: title: bromide examples: - value: 0.05 parts per million - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - bromide is_a: core field @@ -6956,7 +6938,7 @@ slots: title: design, construction, and operation documents examples: - value: maintenance plans - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - design, construction, and operation documents is_a: core field @@ -6977,7 +6959,7 @@ slots: title: building occupancy type examples: - value: market - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - building occupancy type is_a: core field @@ -6997,7 +6979,7 @@ slots: title: building setting examples: - value: rural - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - building setting is_a: core field @@ -7020,7 +7002,7 @@ slots: title: built structure age examples: - value: '15' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - built structure age is_a: core field @@ -7041,7 +7023,7 @@ slots: title: built structure setting examples: - value: rural - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - built structure setting is_a: core field @@ -7063,7 +7045,7 @@ slots: title: built structure type examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - built structure type is_a: core field @@ -7087,7 +7069,7 @@ slots: title: calcium examples: - value: 0.2 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - calcium is_a: core field @@ -7110,7 +7092,7 @@ slots: title: carbon dioxide examples: - value: 410 parts per million - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - carbon dioxide is_a: core field @@ -7133,7 +7115,7 @@ slots: title: carbon monoxide examples: - value: 0.1 parts per million - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - carbon monoxide is_a: core field @@ -7153,7 +7135,7 @@ slots: title: carbon/nitrogen ratio examples: - value: '0.417361111' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - carbon/nitrogen ratio is_a: core field @@ -7176,7 +7158,7 @@ slots: title: ceiling area examples: - value: 25 square meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling area is_a: core field @@ -7197,7 +7179,7 @@ slots: title: ceiling condition examples: - value: damaged - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling condition is_a: core field @@ -7217,7 +7199,7 @@ slots: title: ceiling finish material examples: - value: stucco - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling finish material is_a: core field @@ -7237,7 +7219,7 @@ slots: title: ceiling structure examples: - value: concrete - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling structure is_a: core field @@ -7258,7 +7240,7 @@ slots: title: ceiling texture examples: - value: popcorn - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling texture is_a: core field @@ -7284,7 +7266,7 @@ slots: title: ceiling thermal mass examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling thermal mass is_a: core field @@ -7304,7 +7286,7 @@ slots: title: ceiling type examples: - value: coffered - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling type is_a: core field @@ -7324,7 +7306,7 @@ slots: title: ceiling signs of water/mold examples: - value: presence of mold visible - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling signs of water/mold is_a: core field @@ -7348,7 +7330,7 @@ slots: title: chemical administration examples: - value: agar [CHEBI:2509];2018-05-11T20:00Z - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chemical administration is_a: core field @@ -7375,7 +7357,7 @@ slots: title: chemical mutagen examples: - value: nitrous acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chemical mutagen is_a: core field @@ -7401,7 +7383,7 @@ slots: title: chemical oxygen demand examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chemical oxygen demand is_a: core field @@ -7426,7 +7408,7 @@ slots: title: chemical treatment method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chemical treatment method is_a: core field @@ -7451,7 +7433,7 @@ slots: title: chemical treatment examples: - value: ACCENT 1125;DOW;2010-11-17 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chemical treatment is_a: core field @@ -7471,7 +7453,7 @@ slots: title: chimera check software examples: - value: uchime;v4.1;default parameters - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chimera check software is_a: sequencing field @@ -7495,7 +7477,7 @@ slots: title: chloride examples: - value: 5000 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chloride is_a: core field @@ -7518,7 +7500,7 @@ slots: title: chlorophyll examples: - value: 5 milligram per cubic meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chlorophyll is_a: core field @@ -7541,7 +7523,7 @@ slots: title: climate environment examples: - value: tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - climate environment is_a: core field @@ -7562,7 +7544,7 @@ slots: title: collection date examples: - value: 2018-05-11T10:00:00+01:00; 2018-05-11 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - collection date is_a: environment field @@ -7585,7 +7567,7 @@ slots: title: conductivity examples: - value: 10 milliSiemens per centimeter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - conductivity is_a: core field @@ -7605,7 +7587,7 @@ slots: title: cooling system identifier examples: - value: '12345' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - cooling system identifier is_a: core field @@ -7625,7 +7607,7 @@ slots: title: history/crop rotation examples: - value: yes;R2/2017-01-01/2018-12-31/P6M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/crop rotation is_a: core field @@ -7649,7 +7631,7 @@ slots: title: culture rooting medium examples: - value: http://himedialabs.com/TD/PT158.pdf - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - culture rooting medium is_a: core field @@ -7670,7 +7652,7 @@ slots: title: current land use examples: - value: conifers - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - current land use is_a: core field @@ -7691,7 +7673,7 @@ slots: title: current vegetation examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - current vegetation is_a: core field @@ -7712,7 +7694,7 @@ slots: title: current vegetation method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - current vegetation method is_a: core field @@ -7733,7 +7715,7 @@ slots: title: date last rain examples: - value: 2018-05-11:T14:30Z - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - date last rain is_a: core field @@ -7757,7 +7739,7 @@ slots: title: density examples: - value: 1000 kilogram per cubic meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - density is_a: core field @@ -7778,7 +7760,7 @@ slots: title: depositional environment examples: - value: Continental - Alluvial - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - depositional environment is_a: core field @@ -7797,7 +7779,7 @@ slots: title: depth examples: - value: 10 meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - depth is_a: environment field @@ -7821,7 +7803,7 @@ slots: title: dew point examples: - value: 22 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dew point is_a: core field @@ -7845,7 +7827,7 @@ slots: title: diether lipids examples: - value: 0.2 nanogram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - diether lipids is_a: core field @@ -7870,7 +7852,7 @@ slots: title: dissolved carbon dioxide examples: - value: 5 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved carbon dioxide is_a: core field @@ -7893,7 +7875,7 @@ slots: title: dissolved hydrogen examples: - value: 0.3 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved hydrogen is_a: core field @@ -7917,7 +7899,7 @@ slots: title: dissolved inorganic carbon examples: - value: 2059 micromole per kilogram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved inorganic carbon is_a: core field @@ -7940,7 +7922,7 @@ slots: title: dissolved inorganic nitrogen examples: - value: 761 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved inorganic nitrogen is_a: core field @@ -7963,7 +7945,7 @@ slots: title: dissolved inorganic phosphorus examples: - value: 56.5 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved inorganic phosphorus is_a: core field @@ -7986,7 +7968,7 @@ slots: title: dissolved iron examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved iron is_a: core field @@ -8010,7 +7992,7 @@ slots: title: dissolved organic carbon examples: - value: 197 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved organic carbon is_a: core field @@ -8034,7 +8016,7 @@ slots: title: dissolved organic nitrogen examples: - value: 0.05 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved organic nitrogen is_a: core field @@ -8057,7 +8039,7 @@ slots: title: dissolved oxygen examples: - value: 175 micromole per kilogram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved oxygen is_a: core field @@ -8081,7 +8063,7 @@ slots: title: dissolved oxygen in fluids examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved oxygen in fluids is_a: core field @@ -8101,7 +8083,7 @@ slots: title: door type, composite examples: - value: revolving - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door type, composite is_a: core field @@ -8121,7 +8103,7 @@ slots: title: door condition examples: - value: new - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door condition is_a: core field @@ -8141,7 +8123,7 @@ slots: title: door direction of opening examples: - value: inward - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door direction of opening is_a: core field @@ -8161,7 +8143,7 @@ slots: title: door location examples: - value: north - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door location is_a: core field @@ -8181,7 +8163,7 @@ slots: title: door material examples: - value: wood - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door material is_a: core field @@ -8201,7 +8183,7 @@ slots: title: door movement examples: - value: swinging - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door movement is_a: core field @@ -8224,7 +8206,7 @@ slots: title: door area or size examples: - value: 2.5 square meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door area or size is_a: core field @@ -8244,7 +8226,7 @@ slots: title: door type examples: - value: wooden - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door type is_a: core field @@ -8264,7 +8246,7 @@ slots: title: door type, metal examples: - value: hollow - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door type, metal is_a: core field @@ -8284,7 +8266,7 @@ slots: title: door type, wood examples: - value: battened - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door type, wood is_a: core field @@ -8304,7 +8286,7 @@ slots: title: door signs of water/mold examples: - value: presence of mold visible - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door signs of water/mold is_a: core field @@ -8330,7 +8312,7 @@ slots: title: downward PAR examples: - value: 28.71 microEinstein per square meter per second - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - downward PAR is_a: core field @@ -8350,7 +8332,7 @@ slots: title: drainage classification examples: - value: well - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - drainage classification is_a: core field @@ -8371,7 +8353,7 @@ slots: title: drawings examples: - value: sketch - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - drawings is_a: core field @@ -8394,7 +8376,7 @@ slots: title: efficiency percent examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - efficiency percent is_a: core field @@ -8414,7 +8396,7 @@ slots: title: elevation examples: - value: 100 meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - elevation is_a: environment field @@ -8434,7 +8416,7 @@ slots: title: elevator count examples: - value: '2' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - elevator count is_a: core field @@ -8459,7 +8441,7 @@ slots: title: emulsions examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - emulsions is_a: core field @@ -8484,7 +8466,7 @@ slots: examples: - value: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water sample from the photic zone in middle of the Atlantic Ocean - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - broad-scale environmental context is_a: environment field @@ -8511,7 +8493,7 @@ slots: various vegetation layers in a forest consider: canopy [ENVO:00000047]|herb and fern layer [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub layer [ENVO:01000336].' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - local environmental context is_a: environment field @@ -8538,7 +8520,7 @@ slots: - value: 'soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating a duck on a pond consider: pond water [ENVO:00002228]|air [ENVO_00002005]' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - environmental medium is_a: environment field @@ -8559,7 +8541,7 @@ slots: title: escalator count examples: - value: '4' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - escalator count is_a: core field @@ -8582,7 +8564,7 @@ slots: title: ethylbenzene examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ethylbenzene is_a: core field @@ -8605,7 +8587,7 @@ slots: title: exposed ductwork examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - exposed ductwork is_a: core field @@ -8625,7 +8607,7 @@ slots: title: exposed pipes examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - exposed pipes is_a: core field @@ -8647,7 +8629,7 @@ slots: title: experimental factor examples: - value: time series design [EFO:EFO_0001779] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - experimental factor is_a: investigation field @@ -8668,7 +8650,7 @@ slots: title: exterior door count examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - exterior door count is_a: core field @@ -8688,7 +8670,7 @@ slots: title: orientations of exterior wall examples: - value: northwest - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - orientations of exterior wall is_a: core field @@ -8708,7 +8690,7 @@ slots: title: orientations of exterior window examples: - value: southwest - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - orientations of exterior window is_a: core field @@ -8728,7 +8710,7 @@ slots: title: history/extreme events examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/extreme events is_a: core field @@ -8749,7 +8731,7 @@ slots: title: soil_taxonomic/FAO classification examples: - value: Luvisols - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil_taxonomic/FAO classification is_a: core field @@ -8776,7 +8758,7 @@ slots: title: fertilizer regimen examples: - value: urea;0.6 milligram per liter;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - fertilizer regimen is_a: core field @@ -8797,7 +8779,7 @@ slots: title: field name examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - field name is_a: core field @@ -8818,7 +8800,7 @@ slots: title: filter type examples: - value: HEPA - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - filter type is_a: core field @@ -8838,7 +8820,7 @@ slots: title: history/fire examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/fire is_a: core field @@ -8858,7 +8840,7 @@ slots: title: fireplace type examples: - value: wood burning - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - fireplace type is_a: core field @@ -8879,7 +8861,7 @@ slots: title: history/flooding examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/flooding is_a: core field @@ -8902,7 +8884,7 @@ slots: title: floor age examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor age is_a: core field @@ -8925,7 +8907,7 @@ slots: title: floor area examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor area is_a: core field @@ -8946,7 +8928,7 @@ slots: title: floor condition examples: - value: new - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor condition is_a: core field @@ -8967,7 +8949,7 @@ slots: title: floor count examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor count is_a: core field @@ -8987,7 +8969,7 @@ slots: title: floor finish material examples: - value: carpet - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor finish material is_a: core field @@ -9008,7 +8990,7 @@ slots: title: floor structure examples: - value: concrete - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor structure is_a: core field @@ -9031,7 +9013,7 @@ slots: title: floor thermal mass examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor thermal mass is_a: core field @@ -9051,7 +9033,7 @@ slots: title: floor signs of water/mold examples: - value: ceiling discoloration - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor signs of water/mold is_a: core field @@ -9074,7 +9056,7 @@ slots: title: fluorescence examples: - value: 2.5 volts - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - fluorescence is_a: core field @@ -9095,7 +9077,7 @@ slots: title: frequency of cleaning examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - frequency of cleaning is_a: core field @@ -9115,7 +9097,7 @@ slots: title: frequency of cooking examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - frequency of cooking is_a: core field @@ -9141,7 +9123,7 @@ slots: title: fungicide regimen examples: - value: bifonazole;1 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - fungicide regimen is_a: core field @@ -9162,7 +9144,7 @@ slots: title: furniture examples: - value: chair - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - furniture is_a: core field @@ -9188,7 +9170,7 @@ slots: title: gaseous environment examples: - value: nitric oxide;0.5 micromole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - gaseous environment is_a: core field @@ -9213,7 +9195,7 @@ slots: title: gaseous substances examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - gaseous substances is_a: core field @@ -9234,7 +9216,7 @@ slots: title: gender of restroom examples: - value: male - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - gender of restroom is_a: core field @@ -9257,7 +9239,7 @@ slots: title: genetic modification examples: - value: aox1A transgenic - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - genetic modification is_a: core field @@ -9279,7 +9261,7 @@ slots: title: geographic location (country and/or sea,region) examples: - value: 'USA: Maryland, Bethesda' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - geographic location (country and/or sea,region) is_a: environment field @@ -9303,7 +9285,7 @@ slots: title: glucosidase activity examples: - value: 5 mol per liter per hour - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - glucosidase activity is_a: core field @@ -9324,7 +9306,7 @@ slots: title: gravidity examples: - value: yes;due date:2018-05-11 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - gravidity is_a: core field @@ -9352,7 +9334,7 @@ slots: title: gravity examples: - value: 12 g;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - gravity is_a: core field @@ -9375,7 +9357,7 @@ slots: title: growth facility examples: - value: Growth chamber [CO_715:0000189] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - growth facility is_a: core field @@ -9396,7 +9378,7 @@ slots: title: growth habit examples: - value: spreading - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - growth habit is_a: core field @@ -9423,7 +9405,7 @@ slots: title: growth hormone regimen examples: - value: abscisic acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - growth hormone regimen is_a: core field @@ -9444,7 +9426,7 @@ slots: title: hallway/corridor count examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - hallway/corridor count is_a: core field @@ -9464,7 +9446,7 @@ slots: title: handidness examples: - value: right handedness - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - handidness is_a: core field @@ -9485,7 +9467,7 @@ slots: title: hydrocarbon type produced examples: - value: Gas - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - hydrocarbon type produced is_a: core field @@ -9511,7 +9493,7 @@ slots: title: hydrocarbon resource type examples: - value: Oil Sand - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - hydrocarbon resource type is_a: core field @@ -9535,7 +9517,7 @@ slots: title: formation water salinity examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - formation water salinity is_a: core field @@ -9556,7 +9538,7 @@ slots: title: hydrocarbon resource geological age examples: - value: Silurian - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - hydrocarbon resource geological age is_a: core field @@ -9579,7 +9561,7 @@ slots: title: hydrocarbon resource original pressure examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - hydrocarbon resource original pressure is_a: core field @@ -9603,7 +9585,7 @@ slots: title: hydrocarbon resource original temperature examples: - value: 150-295 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - hydrocarbon resource original temperature is_a: core field @@ -9624,7 +9606,7 @@ slots: title: heating and cooling system type examples: - value: heat pump - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - heating and cooling system type is_a: core field @@ -9644,7 +9626,7 @@ slots: title: heating delivery locations examples: - value: north - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - heating delivery locations is_a: core field @@ -9664,7 +9646,7 @@ slots: title: heating system delivery method examples: - value: radiant - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - heating system delivery method is_a: core field @@ -9685,7 +9667,7 @@ slots: title: heating system identifier examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - heating system identifier is_a: core field @@ -9709,7 +9691,7 @@ slots: title: extreme_unusual_properties/heavy metals examples: - value: mercury;0.09 micrograms per gram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - extreme_unusual_properties/heavy metals is_a: core field @@ -9730,7 +9712,7 @@ slots: title: extreme_unusual_properties/heavy metals method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - extreme_unusual_properties/heavy metals method is_a: core field @@ -9754,7 +9736,7 @@ slots: title: height carpet fiber mat examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - height carpet fiber mat is_a: core field @@ -9781,7 +9763,7 @@ slots: title: herbicide regimen examples: - value: atrazine;10 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - herbicide regimen is_a: core field @@ -9802,7 +9784,7 @@ slots: title: soil horizon method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil horizon method is_a: core field @@ -9827,7 +9809,7 @@ slots: title: host age examples: - value: 10 days - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host age is_a: core field @@ -9847,7 +9829,7 @@ slots: title: host body habitat examples: - value: nasopharynx - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host body habitat is_a: core field @@ -9871,7 +9853,7 @@ slots: title: host body product examples: - value: Portion of mucus [fma66938] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host body product is_a: core field @@ -9895,7 +9877,7 @@ slots: title: host body site examples: - value: gill [UBERON:0002535] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host body site is_a: core field @@ -9919,7 +9901,7 @@ slots: title: host body temperature examples: - value: 15 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host body temperature is_a: core field @@ -9939,7 +9921,7 @@ slots: title: host color examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host color is_a: core field @@ -9960,7 +9942,7 @@ slots: title: host common name examples: - value: human - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host common name is_a: core field @@ -9982,7 +9964,7 @@ slots: title: host diet examples: - value: herbivore - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host diet is_a: core field @@ -10006,7 +9988,7 @@ slots: title: host dry mass examples: - value: 500 gram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host dry mass is_a: core field @@ -10027,7 +10009,7 @@ slots: title: host family relationship examples: - value: offspring;Mussel25 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host family relationship is_a: core field @@ -10048,7 +10030,7 @@ slots: title: host genotype examples: - value: C57BL/6 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host genotype is_a: core field @@ -10069,7 +10051,7 @@ slots: title: host growth conditions examples: - value: https://academic.oup.com/icesjms/article/68/2/349/617247 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host growth conditions is_a: core field @@ -10093,7 +10075,7 @@ slots: title: host height examples: - value: 0.1 meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host height is_a: core field @@ -10114,7 +10096,7 @@ slots: title: host last meal examples: - value: corn feed;P2H - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host last meal is_a: core field @@ -10138,7 +10120,7 @@ slots: title: host length examples: - value: 1 meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host length is_a: core field @@ -10158,7 +10140,7 @@ slots: title: host life stage examples: - value: adult - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host life stage is_a: core field @@ -10181,7 +10163,7 @@ slots: title: host phenotype examples: - value: elongated [PATO:0001154] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host phenotype is_a: core field @@ -10202,7 +10184,7 @@ slots: title: host sex examples: - value: non-binary - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host sex is_a: core field @@ -10222,7 +10204,7 @@ slots: title: host shape examples: - value: round - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host shape is_a: core field @@ -10243,7 +10225,7 @@ slots: title: host subject id examples: - value: MPI123 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host subject id is_a: core field @@ -10269,7 +10251,7 @@ slots: title: host subspecific genetic lineage examples: - value: 'serovar:Newport, variety:glabrum, cultivar: Red Delicious' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host subspecific genetic lineage is_a: core field @@ -10290,7 +10272,7 @@ slots: title: host substrate examples: - value: rock - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host substrate is_a: core field @@ -10312,7 +10294,7 @@ slots: title: observed host symbionts examples: - value: flukeworms - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - observed host symbionts is_a: core field @@ -10333,7 +10315,7 @@ slots: title: host taxid examples: - value: '7955' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host taxid is_a: core field @@ -10357,7 +10339,7 @@ slots: title: host total mass examples: - value: 2500 gram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host total mass is_a: core field @@ -10380,7 +10362,7 @@ slots: title: host wet mass examples: - value: 1500 gram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host wet mass is_a: core field @@ -10403,7 +10385,7 @@ slots: title: humidity examples: - value: 25 gram per cubic meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - humidity is_a: core field @@ -10430,7 +10412,7 @@ slots: title: humidity regimen examples: - value: 25 gram per cubic meter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - humidity regimen is_a: core field @@ -10452,7 +10434,7 @@ slots: title: indoor space examples: - value: foyer - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - indoor space is_a: core field @@ -10472,7 +10454,7 @@ slots: title: indoor surface examples: - value: wall - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - indoor surface is_a: core field @@ -10496,7 +10478,7 @@ slots: title: industrial effluent percent examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - industrial effluent percent is_a: core field @@ -10520,7 +10502,7 @@ slots: title: inorganic particles examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - inorganic particles is_a: core field @@ -10544,7 +10526,7 @@ slots: title: inside lux light examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - inside lux light is_a: core field @@ -10565,7 +10547,7 @@ slots: title: interior wall condition examples: - value: damaged - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - interior wall condition is_a: core field @@ -10586,7 +10568,7 @@ slots: title: injection water breakthrough date of specific well examples: - value: '2018-05-11' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - injection water breakthrough date of specific well is_a: core field @@ -10610,7 +10592,7 @@ slots: title: injection water fraction examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - injection water fraction is_a: core field @@ -10630,7 +10612,7 @@ slots: title: last time swept/mopped/vacuumed examples: - value: 2018-05-11:T14:30Z - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - last time swept/mopped/vacuumed is_a: core field @@ -10648,7 +10630,7 @@ slots: title: geographic location (latitude and longitude) examples: - value: 50.586825 6.408977 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - geographic location (latitude and longitude) is_a: environment field @@ -10672,7 +10654,7 @@ slots: title: light intensity examples: - value: 0.3 lux - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - light intensity is_a: core field @@ -10696,7 +10678,7 @@ slots: title: light regimen examples: - value: incandescant light;10 lux;450 nanometer - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - light regimen is_a: core field @@ -10720,7 +10702,7 @@ slots: title: light type examples: - value: desk lamp - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - light type is_a: core field @@ -10740,7 +10722,7 @@ slots: title: links to additional analysis examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - links to additional analysis is_a: core field @@ -10761,7 +10743,7 @@ slots: title: link to classification information examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - link to classification information is_a: core field @@ -10782,7 +10764,7 @@ slots: title: link to climate information examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - link to climate information is_a: core field @@ -10804,7 +10786,7 @@ slots: title: lithology examples: - value: Volcanic - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - lithology is_a: core field @@ -10824,7 +10806,7 @@ slots: title: soil_taxonomic/local classification examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil_taxonomic/local classification is_a: core field @@ -10845,7 +10827,7 @@ slots: title: soil_taxonomic/local classification method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil_taxonomic/local classification method is_a: core field @@ -10870,7 +10852,7 @@ slots: title: magnesium examples: - value: 52.8 micromole per kilogram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - magnesium is_a: core field @@ -10890,7 +10872,7 @@ slots: title: maximum occupancy examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - maximum occupancy is_a: core field @@ -10913,7 +10895,7 @@ slots: title: mean friction velocity examples: - value: 0.5 meter per second - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mean friction velocity is_a: core field @@ -10936,7 +10918,7 @@ slots: title: mean peak friction velocity examples: - value: 1 meter per second - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mean peak friction velocity is_a: core field @@ -10956,7 +10938,7 @@ slots: title: mechanical structure examples: - value: elevator - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mechanical structure is_a: core field @@ -10977,7 +10959,7 @@ slots: title: mechanical damage examples: - value: pruning;bark - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mechanical damage is_a: core field @@ -11001,7 +10983,7 @@ slots: title: methane examples: - value: 1800 parts per billion - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - methane is_a: core field @@ -11021,7 +11003,7 @@ slots: title: microbial biomass method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - microbial biomass method is_a: core field @@ -11047,7 +11029,7 @@ slots: title: microbial biomass examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - microbial biomass is_a: core field @@ -11075,7 +11057,7 @@ slots: title: mineral nutrient regimen examples: - value: potassium;15 gram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mineral nutrient regimen is_a: core field @@ -11097,7 +11079,7 @@ slots: title: miscellaneous parameter examples: - value: Bicarbonate ion concentration;2075 micromole per kilogram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - miscellaneous parameter is_a: core field @@ -11121,7 +11103,7 @@ slots: title: n-alkanes examples: - value: n-hexadecane;100 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - n-alkanes is_a: core field @@ -11145,7 +11127,7 @@ slots: title: nitrate examples: - value: 65 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - nitrate is_a: core field @@ -11168,7 +11150,7 @@ slots: title: nitrite examples: - value: 0.5 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - nitrite is_a: core field @@ -11191,7 +11173,7 @@ slots: title: nitrogen examples: - value: 4.2 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - nitrogen is_a: core field @@ -11219,7 +11201,7 @@ slots: title: non-mineral nutrient regimen examples: - value: carbon dioxide;10 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - non-mineral nutrient regimen is_a: core field @@ -11239,7 +11221,7 @@ slots: title: nucleic acid amplification examples: - value: https://phylogenomics.me/protocols/16s-pcr-protocol/ - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - nucleic acid amplification is_a: sequencing field @@ -11259,7 +11241,7 @@ slots: title: nucleic acid extraction examples: - value: https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - nucleic acid extraction is_a: sequencing field @@ -11280,7 +11262,7 @@ slots: title: number of pets examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - number of pets is_a: core field @@ -11300,7 +11282,7 @@ slots: title: number of houseplants examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - number of houseplants is_a: core field @@ -11320,7 +11302,7 @@ slots: title: number of residents examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - number of residents is_a: core field @@ -11340,7 +11322,7 @@ slots: title: occupant density at sampling examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - occupant density at sampling is_a: core field @@ -11360,7 +11342,7 @@ slots: title: occupancy documentation examples: - value: estimate - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - occupancy documentation is_a: core field @@ -11380,7 +11362,7 @@ slots: title: occupancy at sampling examples: - value: '10' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - occupancy at sampling is_a: core field @@ -11403,7 +11385,7 @@ slots: title: organic carbon examples: - value: 1.5 microgram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - organic carbon is_a: core field @@ -11432,7 +11414,7 @@ slots: title: organism count qPCR information examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - organism count qPCR information is_a: core field @@ -11457,7 +11439,7 @@ slots: title: organic matter examples: - value: 1.75 milligram per cubic meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - organic matter is_a: core field @@ -11480,7 +11462,7 @@ slots: title: organic nitrogen examples: - value: 4 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - organic nitrogen is_a: core field @@ -11504,7 +11486,7 @@ slots: title: organic particles examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - organic particles is_a: core field @@ -11532,7 +11514,7 @@ slots: title: organism count examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - organism count is_a: core field @@ -11555,7 +11537,7 @@ slots: title: oil water contact depth examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - oil water contact depth is_a: core field @@ -11575,7 +11557,7 @@ slots: title: oxygenation status of sample examples: - value: aerobic - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - oxygenation status of sample is_a: core field @@ -11598,7 +11580,7 @@ slots: title: oxygen examples: - value: 600 parts per million - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - oxygen is_a: core field @@ -11621,7 +11603,7 @@ slots: title: particulate organic carbon examples: - value: 1.92 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - particulate organic carbon is_a: core field @@ -11644,7 +11626,7 @@ slots: title: particulate organic nitrogen examples: - value: 0.3 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - particulate organic nitrogen is_a: core field @@ -11669,7 +11651,7 @@ slots: title: particle classification examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - particle classification is_a: core field @@ -11689,7 +11671,7 @@ slots: title: pcr conditions examples: - value: initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pcr conditions is_a: sequencing field @@ -11711,7 +11693,7 @@ slots: title: pcr primers examples: - value: FWD:GTGCCAGCMGCCGCGGTAA;REV:GGACTACHVGGGTWTCTAAT - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pcr primers is_a: sequencing field @@ -11736,7 +11718,7 @@ slots: title: permeability examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - permeability is_a: core field @@ -11760,7 +11742,7 @@ slots: title: perturbation examples: - value: antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - perturbation is_a: core field @@ -11788,7 +11770,7 @@ slots: title: pesticide regimen examples: - value: pyrethrum;0.6 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pesticide regimen is_a: core field @@ -11812,7 +11794,7 @@ slots: title: petroleum hydrocarbon examples: - value: 0.05 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - petroleum hydrocarbon is_a: core field @@ -11833,7 +11815,7 @@ slots: title: pH examples: - value: '7.2' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pH is_a: core field @@ -11853,7 +11835,7 @@ slots: title: pH method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pH method is_a: core field @@ -11877,7 +11859,7 @@ slots: title: pH regimen examples: - value: 7.6;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pH regimen is_a: core field @@ -11901,7 +11883,7 @@ slots: title: phaeopigments examples: - value: 2.5 milligram per cubic meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - phaeopigments is_a: core field @@ -11925,7 +11907,7 @@ slots: title: phosphate examples: - value: 0.7 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - phosphate is_a: core field @@ -11948,7 +11930,7 @@ slots: title: phospholipid fatty acid examples: - value: 2.98 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - phospholipid fatty acid is_a: core field @@ -11972,7 +11954,7 @@ slots: title: photon flux examples: - value: 3.926 micromole photons per second per square meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - photon flux is_a: core field @@ -11996,7 +11978,7 @@ slots: title: plant growth medium examples: - value: hydroponic plant culture media [EO:0007067] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - plant growth medium is_a: core field @@ -12016,7 +11998,7 @@ slots: title: plant product examples: - value: xylem sap [PO:0025539] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - plant product is_a: core field @@ -12038,7 +12020,7 @@ slots: title: plant sex examples: - value: Hermaphroditic - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - plant sex is_a: core field @@ -12061,7 +12043,7 @@ slots: title: plant structure examples: - value: epidermis [PO:0005679] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - plant structure is_a: core field @@ -12087,7 +12069,7 @@ slots: title: pollutants examples: - value: lead;0.15 microgram per cubic meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pollutants is_a: core field @@ -12109,7 +12091,7 @@ slots: title: pooling of DNA extracts (if done) examples: - value: yes;5 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pooling of DNA extracts (if done) is_a: core field @@ -12134,7 +12116,7 @@ slots: title: porosity examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - porosity is_a: core field @@ -12158,7 +12140,7 @@ slots: title: potassium examples: - value: 463 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - potassium is_a: core field @@ -12184,7 +12166,7 @@ slots: title: pour point examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pour point is_a: core field @@ -12205,7 +12187,7 @@ slots: title: pre-treatment examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pre-treatment is_a: core field @@ -12227,7 +12209,7 @@ slots: title: presence of pets, animals, or insects examples: - value: cat;5 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - presence of pets, animals, or insects is_a: core field @@ -12251,7 +12233,7 @@ slots: title: pressure examples: - value: 50 atmosphere - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pressure is_a: core field @@ -12271,7 +12253,7 @@ slots: title: history/previous land use method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/previous land use method is_a: core field @@ -12292,7 +12274,7 @@ slots: title: history/previous land use examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/previous land use is_a: core field @@ -12317,7 +12299,7 @@ slots: title: primary production examples: - value: 100 milligram per cubic meter per day - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - primary production is_a: core field @@ -12339,7 +12321,7 @@ slots: title: primary treatment examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - primary treatment is_a: core field @@ -12363,7 +12345,7 @@ slots: title: production rate examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - production rate is_a: core field @@ -12383,7 +12365,7 @@ slots: title: production start date examples: - value: '2018-05-11' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - production start date is_a: core field @@ -12404,7 +12386,7 @@ slots: title: profile position examples: - value: summit - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - profile position is_a: core field @@ -12424,7 +12406,7 @@ slots: title: quadrant position examples: - value: West side - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - quadrant position is_a: core field @@ -12451,7 +12433,7 @@ slots: title: radiation regimen examples: - value: gamma radiation;60 gray;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - radiation regimen is_a: core field @@ -12478,7 +12460,7 @@ slots: title: rainfall regimen examples: - value: 15 millimeter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rainfall regimen is_a: core field @@ -12501,7 +12483,7 @@ slots: title: reactor type examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - reactor type is_a: core field @@ -12526,7 +12508,7 @@ slots: title: redox potential examples: - value: 300 millivolt - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - redox potential is_a: core field @@ -12550,7 +12532,7 @@ slots: title: relative air humidity examples: - value: 80% - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - relative air humidity is_a: core field @@ -12573,7 +12555,7 @@ slots: title: outside relative humidity examples: - value: 12 per kilogram of air - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - outside relative humidity is_a: core field @@ -12593,7 +12575,7 @@ slots: title: relative sampling location examples: - value: center of car - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - relative sampling location is_a: core field @@ -12611,7 +12593,7 @@ slots: title: relationship to oxygen examples: - value: aerobe - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - relationship to oxygen is_a: nucleic acid sequence source field @@ -12631,7 +12613,7 @@ slots: title: reservoir name examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - reservoir name is_a: core field @@ -12659,7 +12641,7 @@ slots: title: resins wt% examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - resins wt% is_a: core field @@ -12683,7 +12665,7 @@ slots: title: room air exchange rate examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room air exchange rate is_a: core field @@ -12704,7 +12686,7 @@ slots: title: room architectural elements examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room architectural elements is_a: core field @@ -12725,7 +12707,7 @@ slots: title: room condition examples: - value: new - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room condition is_a: core field @@ -12745,7 +12727,7 @@ slots: title: rooms connected by a doorway examples: - value: office - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooms connected by a doorway is_a: core field @@ -12766,7 +12748,7 @@ slots: title: room count examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room count is_a: core field @@ -12789,7 +12771,7 @@ slots: title: room dimensions examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room dimensions is_a: core field @@ -12814,7 +12796,7 @@ slots: title: room door distance examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room door distance is_a: core field @@ -12836,7 +12818,7 @@ slots: title: rooms that share a door with sampling room examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooms that share a door with sampling room is_a: core field @@ -12858,7 +12840,7 @@ slots: title: rooms that are on the same hallway examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooms that are on the same hallway is_a: core field @@ -12879,7 +12861,7 @@ slots: title: room location in building examples: - value: interior room - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room location in building is_a: core field @@ -12900,7 +12882,7 @@ slots: title: room moisture damage or mold history examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room moisture damage or mold history is_a: core field @@ -12923,7 +12905,7 @@ slots: title: room net area examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room net area is_a: core field @@ -12944,7 +12926,7 @@ slots: title: room occupancy examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room occupancy is_a: core field @@ -12965,7 +12947,7 @@ slots: title: room sampling position examples: - value: south corner - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room sampling position is_a: core field @@ -12986,7 +12968,7 @@ slots: title: room type examples: - value: bathroom - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room type is_a: core field @@ -13009,7 +12991,7 @@ slots: title: room volume examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room volume is_a: core field @@ -13031,7 +13013,7 @@ slots: title: rooms that share a wall with sampling room examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooms that share a wall with sampling room is_a: core field @@ -13052,7 +13034,7 @@ slots: title: room window count examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room window count is_a: core field @@ -13073,7 +13055,7 @@ slots: title: rooting conditions examples: - value: http://himedialabs.com/TD/PT158.pdf - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting conditions is_a: core field @@ -13097,7 +13079,7 @@ slots: title: rooting medium carbon examples: - value: sucrose - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting medium carbon is_a: core field @@ -13122,7 +13104,7 @@ slots: title: rooting medium macronutrients examples: - value: KH2PO4;170¬†milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting medium macronutrients is_a: core field @@ -13147,7 +13129,7 @@ slots: title: rooting medium micronutrients examples: - value: H3BO3;6.2¬†milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting medium micronutrients is_a: core field @@ -13168,7 +13150,7 @@ slots: title: rooting medium pH examples: - value: '7.5' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting medium pH is_a: core field @@ -13192,7 +13174,7 @@ slots: title: rooting medium regulators examples: - value: abscisic acid;0.75 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting medium regulators is_a: core field @@ -13214,7 +13196,7 @@ slots: title: rooting medium solidifier examples: - value: agar - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting medium solidifier is_a: core field @@ -13240,7 +13222,7 @@ slots: title: rooting medium organic supplements examples: - value: nicotinic acid;0.5 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting medium organic supplements is_a: core field @@ -13269,7 +13251,7 @@ slots: title: salinity examples: - value: 25 practical salinity unit - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - salinity is_a: core field @@ -13289,7 +13271,7 @@ slots: title: salinity method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - salinity method is_a: core field @@ -13317,7 +13299,7 @@ slots: title: salt regimen examples: - value: NaCl;5 gram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - salt regimen is_a: core field @@ -13338,7 +13320,7 @@ slots: title: sample capture status examples: - value: farm sample - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample capture status is_a: core field @@ -13357,7 +13339,7 @@ slots: title: sample collection device examples: - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample collection device is_a: nucleic acid sequence source field @@ -13375,7 +13357,7 @@ slots: title: sample collection method examples: - value: swabbing - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample collection method is_a: nucleic acid sequence source field @@ -13398,7 +13380,7 @@ slots: title: sample collection point examples: - value: well - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample collection point is_a: core field @@ -13419,7 +13401,7 @@ slots: title: sample disease stage examples: - value: infection - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample disease stage is_a: core field @@ -13439,7 +13421,7 @@ slots: title: sampling floor examples: - value: 4th floor - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sampling floor is_a: core field @@ -13468,7 +13450,7 @@ slots: title: corrosion rate at sample location examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - corrosion rate at sample location is_a: core field @@ -13488,7 +13470,7 @@ slots: title: sample material processing examples: - value: filtering of seawater, storing samples in ethanol - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample material processing is_a: nucleic acid sequence source field @@ -13517,7 +13499,7 @@ slots: title: sample measured depth examples: - value: 1534 meter;MSL - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample measured depth is_a: core field @@ -13540,7 +13522,7 @@ slots: title: sample name examples: - value: ISDsoil1 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample name is_a: investigation field @@ -13565,7 +13547,7 @@ slots: title: preservative added to sample examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - preservative added to sample is_a: core field @@ -13587,7 +13569,7 @@ slots: title: sampling room ID or name examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sampling room ID or name is_a: core field @@ -13608,7 +13590,7 @@ slots: title: amount or size of sample collected examples: - value: 5 liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - amount or size of sample collected is_a: nucleic acid sequence source field @@ -13631,7 +13613,7 @@ slots: title: sample size sorting method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample size sorting method is_a: core field @@ -13652,7 +13634,7 @@ slots: title: sample storage duration examples: - value: P1Y6M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample storage duration is_a: core field @@ -13673,7 +13655,7 @@ slots: title: sample storage location examples: - value: Freezer no:5 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample storage location is_a: core field @@ -13697,7 +13679,7 @@ slots: title: sample storage temperature examples: - value: -80 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample storage temperature is_a: core field @@ -13719,7 +13701,7 @@ slots: title: sample subtype examples: - value: biofilm - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample subtype is_a: core field @@ -13738,7 +13720,7 @@ slots: title: Taxonomy ID of DNA sample examples: - value: Gut Metagenome [NCBI:txid749906] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - Taxonomy ID of DNA sample is_a: investigation field @@ -13762,7 +13744,7 @@ slots: title: sampling time outside examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sampling time outside is_a: core field @@ -13786,7 +13768,7 @@ slots: title: sample transport conditions examples: - value: 5 days;-20 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample transport conditions is_a: core field @@ -13812,7 +13794,7 @@ slots: title: sample true vertical depth subsea examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample true vertical depth subsea is_a: core field @@ -13838,7 +13820,7 @@ slots: title: sample type examples: - value: built environment sample [GENEPIO:0001248] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample type is_a: core field @@ -13861,7 +13843,7 @@ slots: title: sample volume or weight for DNA extraction examples: - value: 1500 milliliter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample volume or weight for DNA extraction is_a: nucleic acid sequence source field @@ -13881,7 +13863,7 @@ slots: title: sampling day weather examples: - value: foggy - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sampling day weather is_a: core field @@ -13901,7 +13883,7 @@ slots: title: sample well name examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample well name is_a: core field @@ -13929,7 +13911,7 @@ slots: title: saturates wt% examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - saturates wt% is_a: core field @@ -13952,7 +13934,7 @@ slots: title: season examples: - value: autumn [NCIT:C94733] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - season is_a: core field @@ -13976,7 +13958,7 @@ slots: title: seasonal environment examples: - value: rainy;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - seasonal environment is_a: core field @@ -14001,7 +13983,7 @@ slots: title: mean seasonal precipitation examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mean seasonal precipitation is_a: core field @@ -14024,7 +14006,7 @@ slots: title: mean seasonal temperature examples: - value: 18 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mean seasonal temperature is_a: core field @@ -14044,7 +14026,7 @@ slots: title: seasonal use examples: - value: Winter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - seasonal use is_a: core field @@ -14065,7 +14047,7 @@ slots: title: secondary treatment examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - secondary treatment is_a: core field @@ -14086,7 +14068,7 @@ slots: title: sediment type examples: - value: biogenous - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sediment type is_a: core field @@ -14104,7 +14086,7 @@ slots: title: sequencing method examples: - value: 454 Genome Sequencer FLX [OBI:0000702] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sequencing method is_a: sequencing field @@ -14125,7 +14107,7 @@ slots: title: sequence quality check examples: - value: none - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sequence quality check is_a: sequencing field @@ -14146,7 +14128,7 @@ slots: title: sewage type examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sewage type is_a: core field @@ -14167,7 +14149,7 @@ slots: title: shading device signs of water/mold examples: - value: no presence of mold visible - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - shading device signs of water/mold is_a: core field @@ -14188,7 +14170,7 @@ slots: title: shading device condition examples: - value: new - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - shading device condition is_a: core field @@ -14208,7 +14190,7 @@ slots: title: shading device location examples: - value: exterior - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - shading device location is_a: core field @@ -14229,7 +14211,7 @@ slots: title: shading device material examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - shading device material is_a: core field @@ -14250,7 +14232,7 @@ slots: title: shading device type examples: - value: slatted aluminum awning - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - shading device type is_a: core field @@ -14271,7 +14253,7 @@ slots: title: composite design/sieving examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - composite design/sieving is_a: core field @@ -14295,7 +14277,7 @@ slots: title: silicate examples: - value: 0.05 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - silicate is_a: core field @@ -14312,7 +14294,7 @@ slots: title: size fraction selected examples: - value: 0-0.22 micrometer - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - size fraction selected is_a: nucleic acid sequence source field @@ -14337,7 +14319,7 @@ slots: title: size-fraction lower threshold examples: - value: 0.2 micrometer - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - size-fraction lower threshold is_a: core field @@ -14361,7 +14343,7 @@ slots: title: size-fraction upper threshold examples: - value: 20 micrometer - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - size-fraction upper threshold is_a: core field @@ -14387,7 +14369,7 @@ slots: title: slope aspect examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - slope aspect is_a: core field @@ -14412,7 +14394,7 @@ slots: title: slope gradient examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - slope gradient is_a: core field @@ -14435,7 +14417,7 @@ slots: title: sludge retention time examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sludge retention time is_a: core field @@ -14458,7 +14440,7 @@ slots: title: sodium examples: - value: 10.5 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sodium is_a: core field @@ -14480,7 +14462,7 @@ slots: title: soil horizon examples: - value: A horizon - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil horizon is_a: core field @@ -14503,7 +14485,7 @@ slots: title: soil texture measurement examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil texture measurement is_a: core field @@ -14523,7 +14505,7 @@ slots: title: soil texture method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil texture method is_a: core field @@ -14546,7 +14528,7 @@ slots: title: soil type examples: - value: plinthosol [ENVO:00002250] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil type is_a: core field @@ -14568,7 +14550,7 @@ slots: title: soil type method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil type method is_a: core field @@ -14594,7 +14576,7 @@ slots: title: solar irradiance examples: - value: 1.36 kilowatts per square meter per day - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - solar irradiance is_a: core field @@ -14618,7 +14600,7 @@ slots: title: soluble inorganic material examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soluble inorganic material is_a: core field @@ -14643,7 +14625,7 @@ slots: title: soluble organic material examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soluble organic material is_a: core field @@ -14667,7 +14649,7 @@ slots: title: soluble reactive phosphorus examples: - value: 0.1 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soluble reactive phosphorus is_a: core field @@ -14696,7 +14678,7 @@ slots: title: source material identifiers examples: - value: MPI012345 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - source material identifiers is_a: nucleic acid sequence source field @@ -14717,7 +14699,7 @@ slots: title: space typical state examples: - value: typically occupied - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - space typical state is_a: core field @@ -14739,7 +14721,7 @@ slots: title: specifications examples: - value: construction - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - specifications is_a: core field @@ -14764,7 +14746,7 @@ slots: title: specific humidity examples: - value: 15 per kilogram of air - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - specific humidity is_a: core field @@ -14785,7 +14767,7 @@ slots: title: source rock depositional environment examples: - value: Marine - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - source rock depositional environment is_a: core field @@ -14806,7 +14788,7 @@ slots: title: source rock geological age examples: - value: Silurian - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - source rock geological age is_a: core field @@ -14830,7 +14812,7 @@ slots: title: source rock kerogen type examples: - value: Type IV - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - source rock kerogen type is_a: core field @@ -14851,7 +14833,7 @@ slots: title: source rock lithology examples: - value: Coal - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - source rock lithology is_a: core field @@ -14874,7 +14856,7 @@ slots: title: standing water regimen examples: - value: standing water;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - standing water regimen is_a: core field @@ -14896,7 +14878,7 @@ slots: title: storage conditions examples: - value: -20 degree Celsius freezer;P2Y10D - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - storage conditions is_a: core field @@ -14918,7 +14900,7 @@ slots: title: substructure type examples: - value: basement - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - substructure type is_a: core field @@ -14941,7 +14923,7 @@ slots: title: sulfate examples: - value: 5 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sulfate is_a: core field @@ -14964,7 +14946,7 @@ slots: title: sulfate in formation water examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sulfate in formation water is_a: core field @@ -14987,7 +14969,7 @@ slots: title: sulfide examples: - value: 2 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sulfide is_a: core field @@ -15007,7 +14989,7 @@ slots: title: surface-air contaminant examples: - value: radon - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - surface-air contaminant is_a: core field @@ -15030,7 +15012,7 @@ slots: title: surface humidity examples: - value: 10% - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - surface humidity is_a: core field @@ -15050,7 +15032,7 @@ slots: title: surface material examples: - value: wood - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - surface material is_a: core field @@ -15073,7 +15055,7 @@ slots: title: surface moisture examples: - value: 0.01 gram per square meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - surface moisture is_a: core field @@ -15093,7 +15075,7 @@ slots: title: surface moisture pH examples: - value: '7' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - surface moisture pH is_a: core field @@ -15116,7 +15098,7 @@ slots: title: surface temperature examples: - value: 15 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - surface temperature is_a: core field @@ -15139,7 +15121,7 @@ slots: title: suspended particulate matter examples: - value: 0.5 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - suspended particulate matter is_a: core field @@ -15164,7 +15146,7 @@ slots: title: suspended solids examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - suspended solids is_a: core field @@ -15191,7 +15173,7 @@ slots: title: total acid number examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total acid number is_a: core field @@ -15208,7 +15190,7 @@ slots: title: target gene examples: - value: 16S rRNA, 18S rRNA, nif, amoA, rpo - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - target gene is_a: sequencing field @@ -15227,7 +15209,7 @@ slots: title: target subfragment examples: - value: V6, V9, ITS - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - target subfragment is_a: sequencing field @@ -15248,7 +15230,7 @@ slots: title: temperature examples: - value: 25 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - temperature is_a: environment field @@ -15271,7 +15253,7 @@ slots: title: temperature outside house examples: - value: 5 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - temperature outside house is_a: core field @@ -15292,7 +15274,7 @@ slots: title: tertiary treatment examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - tertiary treatment is_a: core field @@ -15313,7 +15295,7 @@ slots: title: tidal stage examples: - value: high tide - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - tidal stage is_a: core field @@ -15333,7 +15315,7 @@ slots: title: history/tillage examples: - value: chisel - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/tillage is_a: core field @@ -15353,7 +15335,7 @@ slots: title: tissue culture growth media examples: - value: https://link.springer.com/content/pdf/10.1007/BF02796489.pdf - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - tissue culture growth media is_a: core field @@ -15377,7 +15359,7 @@ slots: title: toluene examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - toluene is_a: core field @@ -15400,7 +15382,7 @@ slots: title: total carbon examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total carbon is_a: core field @@ -15423,7 +15405,7 @@ slots: title: total depth of water column examples: - value: 500 meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total depth of water column is_a: core field @@ -15447,7 +15429,7 @@ slots: title: total dissolved nitrogen examples: - value: 40 microgram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total dissolved nitrogen is_a: core field @@ -15470,7 +15452,7 @@ slots: title: total inorganic nitrogen examples: - value: 40 microgram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total inorganic nitrogen is_a: core field @@ -15493,7 +15475,7 @@ slots: title: total iron examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total iron is_a: core field @@ -15518,7 +15500,7 @@ slots: title: total nitrogen concentration examples: - value: 50 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total nitrogen concentration is_a: core field @@ -15538,7 +15520,7 @@ slots: title: total nitrogen content method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total nitrogen content method is_a: core field @@ -15562,7 +15544,7 @@ slots: title: total nitrogen content examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total nitrogen content is_a: core field @@ -15582,7 +15564,7 @@ slots: title: total organic carbon method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total organic carbon method is_a: core field @@ -15607,7 +15589,7 @@ slots: title: total organic carbon examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total organic carbon is_a: core field @@ -15630,7 +15612,7 @@ slots: title: total particulate carbon examples: - value: 35 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total particulate carbon is_a: core field @@ -15654,7 +15636,7 @@ slots: title: total phosphorus examples: - value: 0.03 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total phosphorus is_a: core field @@ -15677,7 +15659,7 @@ slots: title: total phosphate examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total phosphate is_a: core field @@ -15700,7 +15682,7 @@ slots: title: total sulfur examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total sulfur is_a: core field @@ -15720,7 +15702,7 @@ slots: title: train line examples: - value: red - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - train line is_a: core field @@ -15740,7 +15722,7 @@ slots: title: train station collection location examples: - value: forest hills - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - train station collection location is_a: core field @@ -15760,7 +15742,7 @@ slots: title: train stop collection location examples: - value: end - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - train stop collection location is_a: core field @@ -15784,7 +15766,7 @@ slots: title: turbidity examples: - value: 0.3 nephelometric turbidity units - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - turbidity is_a: core field @@ -15808,7 +15790,7 @@ slots: title: depth (TVDSS) of hydrocarbon resource pressure examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - depth (TVDSS) of hydrocarbon resource pressure is_a: core field @@ -15832,7 +15814,7 @@ slots: title: depth (TVDSS) of hydrocarbon resource temperature examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - depth (TVDSS) of hydrocarbon resource temperature is_a: core field @@ -15852,7 +15834,7 @@ slots: title: typical occupant density examples: - value: '25' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - typical occupant density is_a: core field @@ -15875,7 +15857,7 @@ slots: title: ventilation rate examples: - value: 750 cubic meter per minute - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ventilation rate is_a: core field @@ -15895,7 +15877,7 @@ slots: title: ventilation type examples: - value: Operable windows - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ventilation type is_a: core field @@ -15919,7 +15901,7 @@ slots: title: volatile fatty acids examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - volatile fatty acids is_a: core field @@ -15942,7 +15924,7 @@ slots: title: vfa in formation water examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - vfa in formation water is_a: core field @@ -15962,7 +15944,7 @@ slots: title: visual media examples: - value: 3D scans - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - visual media is_a: core field @@ -15986,7 +15968,7 @@ slots: title: viscosity examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - viscosity is_a: core field @@ -16012,7 +15994,7 @@ slots: title: volatile organic compounds examples: - value: formaldehyde;500 nanogram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - volatile organic compounds is_a: core field @@ -16036,7 +16018,7 @@ slots: title: wall area examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall area is_a: core field @@ -16057,7 +16039,7 @@ slots: title: wall construction type examples: - value: fire resistive - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall construction type is_a: core field @@ -16077,7 +16059,7 @@ slots: title: wall finish material examples: - value: wood - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall finish material is_a: core field @@ -16100,7 +16082,7 @@ slots: title: wall height examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall height is_a: core field @@ -16120,7 +16102,7 @@ slots: title: wall location examples: - value: north - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall location is_a: core field @@ -16140,7 +16122,7 @@ slots: title: wall surface treatment examples: - value: paneling - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall surface treatment is_a: core field @@ -16160,7 +16142,7 @@ slots: title: wall texture examples: - value: popcorn - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall texture is_a: core field @@ -16185,7 +16167,7 @@ slots: title: wall thermal mass examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall thermal mass is_a: core field @@ -16205,7 +16187,7 @@ slots: title: wall signs of water/mold examples: - value: no presence of mold visible - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall signs of water/mold is_a: core field @@ -16227,7 +16209,7 @@ slots: title: wastewater type examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wastewater type is_a: core field @@ -16248,7 +16230,7 @@ slots: title: water content method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water content method is_a: core field @@ -16272,7 +16254,7 @@ slots: title: water content examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water content is_a: core field @@ -16295,7 +16277,7 @@ slots: title: water current examples: - value: 10 cubic meter per second - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water current is_a: core field @@ -16319,7 +16301,7 @@ slots: title: water cut examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water cut is_a: core field @@ -16342,7 +16324,7 @@ slots: title: water feature size examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water feature size is_a: core field @@ -16362,7 +16344,7 @@ slots: title: water feature type examples: - value: stream - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water feature type is_a: core field @@ -16385,7 +16367,7 @@ slots: title: water production rate examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water production rate is_a: core field @@ -16411,7 +16393,7 @@ slots: title: water temperature regimen examples: - value: 15 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water temperature regimen is_a: core field @@ -16438,7 +16420,7 @@ slots: title: watering regimen examples: - value: 1 liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - watering regimen is_a: core field @@ -16459,7 +16441,7 @@ slots: title: weekday examples: - value: Sunday - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - weekday is_a: core field @@ -16482,7 +16464,7 @@ slots: title: well identification number examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - well identification number is_a: core field @@ -16503,7 +16485,7 @@ slots: title: wind direction examples: - value: Northwest - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wind direction is_a: core field @@ -16527,7 +16509,7 @@ slots: title: wind speed examples: - value: 21 kilometer per hour - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wind speed is_a: core field @@ -16547,7 +16529,7 @@ slots: title: window condition examples: - value: rupture - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window condition is_a: core field @@ -16567,7 +16549,7 @@ slots: title: window covering examples: - value: curtains - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window covering is_a: core field @@ -16587,7 +16569,7 @@ slots: title: window horizontal position examples: - value: middle - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window horizontal position is_a: core field @@ -16607,7 +16589,7 @@ slots: title: window location examples: - value: west - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window location is_a: core field @@ -16627,7 +16609,7 @@ slots: title: window material examples: - value: wood - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window material is_a: core field @@ -16647,7 +16629,7 @@ slots: title: window open frequency examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window open frequency is_a: core field @@ -16670,7 +16652,7 @@ slots: title: window area/size examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window area/size is_a: core field @@ -16692,7 +16674,7 @@ slots: title: window status examples: - value: open - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window status is_a: core field @@ -16713,7 +16695,7 @@ slots: title: window type examples: - value: fixed window - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window type is_a: core field @@ -16733,7 +16715,7 @@ slots: title: window vertical position examples: - value: middle - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window vertical position is_a: core field @@ -16753,7 +16735,7 @@ slots: title: window signs of water/mold examples: - value: no presence of mold visible - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window signs of water/mold is_a: core field @@ -16777,51 +16759,51 @@ slots: title: xylene examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - xylene is_a: core field slot_uri: MIXS:0000156 multivalued: false range: QuantityValue - has numeric value: - name: has numeric value - from_schema: https://microbiomedata/schema/mixs + has raw value: + name: has raw value + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + string_serialization: '{has numeric value} {has unit}' owner: QuantityValue - range: double - core field: - name: core field - description: basic fields - from_schema: https://microbiomedata/schema/mixs + investigation field: + name: investigation field + description: field describing aspect of the investigation/study to which the sample + belongs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true + has unit: + name: has unit + description: Example "m" + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + owner: QuantityValue sequencing field: name: sequencing field - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + abstract: true + core field: + name: core field + description: basic fields + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true + has numeric value: + name: has numeric value + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + owner: QuantityValue + range: double environment field: name: environment field description: field describing environmental aspect of a sample - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true - has raw value: - name: has raw value - from_schema: https://microbiomedata/schema/mixs - string_serialization: '{has numeric value} {has unit}' - owner: QuantityValue - has unit: - name: has unit - description: Example "m" - from_schema: https://microbiomedata/schema/mixs - owner: QuantityValue nucleic acid sequence source field: name: nucleic acid sequence source field - from_schema: https://microbiomedata/schema/mixs - abstract: true - investigation field: - name: investigation field - description: field describing aspect of the investigation/study to which the sample - belongs - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true has_part: name: has_part diff --git a/project/nmdc_materialized_patterns.yaml b/project/nmdc_materialized_patterns.yaml index 8fa51fe8d4..43bf19c134 100644 --- a/project/nmdc_materialized_patterns.yaml +++ b/project/nmdc_materialized_patterns.yaml @@ -23,141 +23,123 @@ id: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema version: v7.4.13 license: https://creativecommons.org/publicdomain/zero/1.0/ prefixes: - COG: - prefix_prefix: COG - prefix_reference: https://unknown.to.linter.org/ - EC: - prefix_prefix: EC - prefix_reference: https://unknown.to.linter.org/ EFO: prefix_prefix: EFO prefix_reference: http://identifiers.org/efo/ - GOLD: - prefix_prefix: GOLD - prefix_reference: http://identifiers.org/gold/ - IMG.TAXON: - prefix_prefix: IMG.TAXON - prefix_reference: http://identifiers.org/img.taxon/ ISA: prefix_prefix: ISA prefix_reference: https://unknown.to.linter.org/ - MS: - prefix_prefix: MS - prefix_reference: http://purl.obolibrary.org/obo/MS_ - MetaCyc: - prefix_prefix: MetaCyc - prefix_reference: https://identifiers.org/metacyc.reaction/ - MetaNetX: - prefix_prefix: MetaNetX - prefix_reference: https://unknown.to.linter.org/ NCIT: prefix_prefix: NCIT prefix_reference: http://purl.obolibrary.org/obo/NCIT_ OBI: prefix_prefix: OBI prefix_reference: http://purl.obolibrary.org/obo/OBI_ - RetroRules: - prefix_prefix: RetroRules - prefix_reference: https://unknown.to.linter.org/ - UniProtKB: - prefix_prefix: UniProtKB - prefix_reference: https://identifiers.org/uniprot/ bare: prefix_prefix: bare prefix_reference: https://unknown.to.linter.org/ - biolink: - prefix_prefix: biolink - prefix_reference: https://w3id.org/biolink/vocab/ - dcterms: - prefix_prefix: dcterms - prefix_reference: http://purl.org/dc/terms/ - emsl: - prefix_prefix: emsl - prefix_reference: https://unknown.to.linter.org/ - gtpo: - prefix_prefix: gtpo - prefix_reference: https://unknown.to.linter.org/ - igsn: - prefix_prefix: igsn - prefix_reference: https://app.geosamples.org/sample/igsn/ - insdc.srs: - prefix_prefix: insdc.srs - prefix_reference: https://unknown.to.linter.org/ - jgi: - prefix_prefix: jgi - prefix_reference: https://unknown.to.linter.org/ linkml: prefix_prefix: linkml prefix_reference: https://w3id.org/linkml/ - mgnify: - prefix_prefix: mgnify - prefix_reference: https://unknown.to.linter.org/ - MIXS: - prefix_prefix: MIXS - prefix_reference: https://w3id.org/mixs/ nmdc: prefix_prefix: nmdc prefix_reference: https://w3id.org/nmdc/ + nmdc_yaml: + prefix_prefix: nmdc_yaml + prefix_reference: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/ prov: prefix_prefix: prov prefix_reference: http://www.w3.org/ns/prov# - qud: - prefix_prefix: qud - prefix_reference: http://qudt.org/1.1/schema/qudt# rdf: prefix_prefix: rdf prefix_reference: http://www.w3.org/1999/02/22-rdf-syntax-ns# rdfs: prefix_prefix: rdfs prefix_reference: http://www.w3.org/2000/01/rdf-schema# - schema: - prefix_prefix: schema - prefix_reference: http://schema.org/ skos: prefix_prefix: skos prefix_reference: http://www.w3.org/2004/02/skos/core# - wgs84: - prefix_prefix: wgs84 - prefix_reference: http://www.w3.org/2003/01/geo/wgs84_pos# xsd: prefix_prefix: xsd prefix_reference: http://www.w3.org/2001/XMLSchema# + jgi: + prefix_prefix: jgi + prefix_reference: https://unknown.to.linter.org/ + dcterms: + prefix_prefix: dcterms + prefix_reference: http://purl.org/dc/terms/ KEGG.COMPOUND: prefix_prefix: KEGG.COMPOUND prefix_reference: http://identifiers.org/kegg.compound/ - igsnvoc: - prefix_prefix: igsnvoc - prefix_reference: https://igsn.org/voc/v1/ + UniProtKB: + prefix_prefix: UniProtKB + prefix_reference: https://identifiers.org/uniprot/ + biolink: + prefix_prefix: biolink + prefix_reference: https://w3id.org/biolink/vocab/ + gtpo: + prefix_prefix: gtpo + prefix_reference: https://unknown.to.linter.org/ + qud: + prefix_prefix: qud + prefix_reference: http://qudt.org/1.1/schema/qudt# + schema: + prefix_prefix: schema + prefix_reference: http://schema.org/ sio: prefix_prefix: sio prefix_reference: http://semanticscience.org/resource/SIO_ + wgs84: + prefix_prefix: wgs84 + prefix_reference: http://www.w3.org/2003/01/geo/wgs84_pos# shex: prefix_prefix: shex prefix_reference: http://www.w3.org/ns/shex# + GOLD: + prefix_prefix: GOLD + prefix_reference: http://identifiers.org/gold/ CHEBI: prefix_prefix: CHEBI prefix_reference: http://purl.obolibrary.org/obo/CHEBI_ CHMO: prefix_prefix: CHMO prefix_reference: http://purl.obolibrary.org/obo/CHMO_ + MIXS: + prefix_prefix: MIXS + prefix_reference: https://w3id.org/mixs/ + COG: + prefix_prefix: COG + prefix_reference: https://unknown.to.linter.org/ + EC: + prefix_prefix: EC + prefix_reference: https://unknown.to.linter.org/ GO: prefix_prefix: GO prefix_reference: http://purl.obolibrary.org/obo/GO_ - KEGG_PATHWAY: - prefix_prefix: KEGG_PATHWAY - prefix_reference: http://identifiers.org/kegg.pathway/ + KEGG.ORTHOLOGY: + prefix_prefix: KEGG.ORTHOLOGY + prefix_reference: http://identifiers.org/kegg.orthology/ KEGG.REACTION: prefix_prefix: KEGG.REACTION prefix_reference: http://identifiers.org/kegg.reaction/ + KEGG_PATHWAY: + prefix_prefix: KEGG_PATHWAY + prefix_reference: http://identifiers.org/kegg.pathway/ + MetaCyc: + prefix_prefix: MetaCyc + prefix_reference: https://identifiers.org/metacyc.reaction/ + MetaNetX: + prefix_prefix: MetaNetX + prefix_reference: https://unknown.to.linter.org/ RHEA: prefix_prefix: RHEA prefix_reference: http://identifiers.org/rhea/ + RetroRules: + prefix_prefix: RetroRules + prefix_reference: https://unknown.to.linter.org/ SEED: prefix_prefix: SEED prefix_reference: http://identifiers.org/seed/ - KEGG.ORTHOLOGY: - prefix_prefix: KEGG.ORTHOLOGY - prefix_reference: http://identifiers.org/kegg.orthology/ emit_prefixes: - rdf - rdfs @@ -993,20 +975,120 @@ enums: text: soil water_extract_soil: text: water_extract_soil - heat_cool_type_enum: - name: heat_cool_type_enum + occup_document_enum: + name: occup_document_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + sediment_type_enum: + name: sediment_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + biogenous: + text: biogenous + cosmogenous: + text: cosmogenous + hydrogenous: + text: hydrogenous + lithogenous: + text: lithogenous + ext_wall_orient_enum: + name: ext_wall_orient_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + train_line_enum: + name: train_line_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + red: + text: red + green: + text: green + orange: + text: orange + building_setting_enum: + name: building_setting_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + room_samp_pos_enum: + name: room_samp_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + wall_loc_enum: + name: wall_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + samp_md_enum: + name: samp_md_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL + other: + text: other cur_land_use_enum: name: cur_land_use_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -1082,33 +1164,57 @@ enums: text: swamp (permanent or semi-permanent water body dominated by woody plants) crop trees (nuts,fruit,christmas trees,nursery trees): text: crop trees (nuts,fruit,christmas trees,nursery trees) - mech_struc_enum: - name: mech_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus - hcr_geol_age_enum: - name: hcr_geol_age_enum + train_stat_loc_enum: + name: train_stat_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Archean: + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside + door_direct_enum: + name: door_direct_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + floor_water_mold_enum: + name: floor_water_mold_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + hcr_geol_age_enum: + name: hcr_geol_age_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + Archean: text: Archean Cambrian: text: Cambrian @@ -1144,98 +1250,48 @@ enums: text: Triassic other: text: other - ceil_finish_mat_enum: - name: ceil_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - host_sex_enum: - name: host_sex_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - biol_stat_enum: - name: biol_stat_enum + surf_air_cont_enum: + name: surf_air_cont_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - season_use_enum: - name: season_use_enum + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + drawings_enum: + name: drawings_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - ext_window_orient_enum: - name: ext_window_orient_enum + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + door_loc_enum: + name: door_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: north: @@ -1246,86 +1302,22 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - floor_finish_mat_enum: - name: floor_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - tile: - text: tile - wood strip or parquet: - text: wood strip or parquet - carpet: - text: carpet - rug: - text: rug - laminate wood: - text: laminate wood - lineoleum: - text: lineoleum - vinyl composition tile: - text: vinyl composition tile - sheet vinyl: - text: sheet vinyl - stone: - text: stone - bamboo: - text: bamboo - cork: - text: cork - terrazo: - text: terrazo - concrete: - text: concrete - none: - text: none - sealed: - text: sealed - clear finish: - text: clear finish - paint: - text: paint - none or unfinished: - text: none or unfinished - samp_capt_status_enum: - name: samp_capt_status_enum + sr_dep_env_enum: + name: sr_dep_env_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine other: text: other - filter_type_enum: - name: filter_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - room_condt_enum: - name: room_condt_enum + room_condt_enum: + name: room_condt_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: new: @@ -1340,6 +1332,72 @@ enums: text: rupture visible signs of mold/mildew: text: visible signs of mold/mildew + samp_dis_stage_enum: + name: samp_dis_stage_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other + quad_pos_enum: + name: quad_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + samp_floor_enum: + name: samp_floor_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + handidness_enum: + name: handidness_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + profile_position_enum: + name: profile_position_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope vis_media_enum: name: vis_media_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -1358,22 +1416,150 @@ enums: text: equipment 3D scans: text: 3D scans - door_move_enum: - name: door_move_enum + substructure_type_enum: + name: substructure_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + lithology_enum: + name: lithology_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic + other: + text: other + arch_struc_enum: + name: arch_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + door_type_enum: + name: door_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + sr_kerog_type_enum: + name: sr_kerog_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + ceil_cond_enum: + name: ceil_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown + int_wall_cond_enum: + name: int_wall_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture plant_sex_enum: name: plant_sex_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -1436,84 +1622,164 @@ enums: text: Trioecious Unisexual: text: Unisexual - door_type_enum: - name: door_type_enum + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - composite: - text: composite - metal: - text: metal - wooden: - text: wooden - surf_material_enum: - name: surf_material_enum + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat + tidal_stage_enum: + name: tidal_stage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass - metal: - text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile - vinyl: - text: vinyl - wood: - text: wood - tillage_enum: - name: tillage_enum + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + samp_capt_status_enum: + name: samp_capt_status_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - window_cover_enum: - name: window_cover_enum + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample + other: + text: other + sr_lithology_enum: + name: sr_lithology_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - room_connected_enum: - name: room_connected_enum + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + depos_env_enum: + name: depos_env_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic + other: + text: other + sr_geol_age_enum: + name: sr_geol_age_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + hcr_enum: + name: hcr_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir + other: + text: other + room_loc_enum: + name: room_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + room_type_enum: + name: room_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: attic: @@ -1534,160 +1800,138 @@ enums: text: kitchen mail room: text: mail room - office: - text: office + private office: + text: private office + open office: + text: open office stairwell: text: stairwell - train_line_enum: - name: train_line_enum + ',restroom': + text: ',restroom' + lobby: + text: lobby + vestibule: + text: vestibule + mechanical or electrical room: + text: mechanical or electrical room + data center: + text: data center + laboratory_wet: + text: laboratory_wet + laboratory_dry: + text: laboratory_dry + gymnasium: + text: gymnasium + natatorium: + text: natatorium + auditorium: + text: auditorium + lockers: + text: lockers + cafe: + text: cafe + warehouse: + text: warehouse + growth_habit_enum: + name: growth_habit_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - samp_dis_stage_enum: - name: samp_dis_stage_enum + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + door_comp_type_enum: + name: door_comp_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other - profile_position_enum: - name: profile_position_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - build_docs_enum: - name: build_docs_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - sr_lithology_enum: - name: sr_lithology_enum + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic + floor_struc_enum: + name: floor_struc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous - other: - text: other - wall_const_type_enum: - name: wall_const_type_enum + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + window_cover_enum: + name: window_cover_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - oxy_stat_samp_enum: - name: oxy_stat_samp_enum + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + freq_clean_enum: + name: freq_clean_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - aerobic: - text: aerobic - anaerobic: - text: anaerobic + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually other: text: other - plant_growth_med_enum: - name: plant_growth_med_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - other artificial liquid medium: - text: other artificial liquid medium - other artificial solid medium: - text: other artificial solid medium - peat moss: - text: peat moss - perlite: - text: perlite - pumice: - text: pumice - sand: - text: sand - soil: - text: soil - vermiculite: - text: vermiculite - water: - text: water - weekday_enum: - name: weekday_enum + wall_texture_enum: + name: wall_texture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl window_mat_enum: name: window_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -1702,152 +1946,66 @@ enums: text: vinyl wood: text: wood - furniture_enum: - name: furniture_enum + light_type_enum: + name: light_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - ceil_cond_enum: - name: ceil_cond_enum + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + season_use_enum: + name: season_use_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - room_type_enum: - name: room_type_enum + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + soil_horizon_enum: + name: soil_horizon_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - private office: - text: private office - open office: - text: open office - stairwell: - text: stairwell - ',restroom': - text: ',restroom' - lobby: - text: lobby - vestibule: - text: vestibule - mechanical or electrical room: - text: mechanical or electrical room - data center: - text: data center - laboratory_wet: - text: laboratory_wet - laboratory_dry: - text: laboratory_dry - gymnasium: - text: gymnasium - natatorium: - text: natatorium - auditorium: - text: auditorium - lockers: - text: lockers - cafe: - text: cafe - warehouse: - text: warehouse - floor_cond_enum: - name: floor_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - window_horiz_pos_enum: - name: window_horiz_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - left: - text: left - middle: - text: middle - right: - text: right - wall_loc_enum: - name: wall_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - freq_clean_enum: - name: freq_clean_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually - other: - text: other - drainage_class_enum: - name: drainage_class_enum + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost + wall_const_type_enum: + name: wall_const_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - very poorly: - text: very poorly - poorly: - text: poorly - somewhat poorly: - text: somewhat poorly - moderately well: - text: moderately well - well: - text: well - excessively drained: - text: excessively drained + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive shading_device_type_enum: name: shading_device_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -1876,146 +2034,270 @@ enums: text: trellis venetian awning: text: venetian awning - sr_kerog_type_enum: - name: sr_kerog_type_enum + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - shading_device_cond_enum: - name: shading_device_cond_enum + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + water_feat_type_enum: + name: water_feat_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - hcr_enum: - name: hcr_enum + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall + filter_type_enum: + name: filter_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - ceil_type_enum: - name: ceil_type_enum + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + tillage_enum: + name: tillage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - samp_subtype_enum: - name: samp_subtype_enum + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + wall_surf_treatment_enum: + name: wall_surf_treatment_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other - build_occup_type_enum: - name: build_occup_type_enum + painted: + text: painted + wall paper: + text: wall paper + no treatment: + text: no treatment + paneling: + text: paneling + stucco: + text: stucco + fabric: + text: fabric + floor_cond_enum: + name: floor_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - drawings_enum: - name: drawings_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + weekday_enum: + name: weekday_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - substructure_type_enum: - name: substructure_type_enum + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + window_horiz_pos_enum: + name: window_horiz_pos_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement + left: + text: left + middle: + text: middle + right: + text: right + window_type_enum: + name: window_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + mech_struc_enum: + name: mech_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + surf_material_enum: + name: surf_material_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass + metal: + text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + door_cond_enum: + name: door_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + biotic_relationship_enum: + name: biotic_relationship_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + door_move_enum: + name: door_move_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + indoor_space_enum: + name: indoor_space_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator indoor_surf_enum: name: indoor_surf_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2036,76 +2318,126 @@ enums: text: window wall: text: wall - door_loc_enum: - name: door_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - samp_md_enum: - name: samp_md_enum + ceil_texture_enum: + name: ceil_texture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - biotic_relationship_enum: - name: biotic_relationship_enum + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + biol_stat_enum: + name: biol_stat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - surf_air_cont_enum: - name: surf_air_cont_enum + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_cond_enum: + name: window_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - samp_floor_enum: - name: samp_floor_enum + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + hc_produced_enum: + name: hc_produced_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby + Oil: + text: Oil + Gas-Condensate: + text: Gas-Condensate + Gas: + text: Gas + Bitumen: + text: Bitumen + Coalbed Methane: + text: Coalbed Methane + other: + text: other + room_connected_enum: + name: room_connected_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell + door_type_metal_enum: + name: door_type_metal_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate door_type_wood_enum: name: door_type_wood_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2130,204 +2462,54 @@ enums: text: louvered wire gauged: text: wire gauged - door_direct_enum: - name: door_direct_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - door_cond_enum: - name: door_cond_enum + drainage_class_enum: + name: drainage_class_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - soil_horizon_enum: - name: soil_horizon_enum + very poorly: + text: very poorly + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + moderately well: + text: moderately well + well: + text: well + excessively drained: + text: excessively drained + rel_to_oxygen_enum: + name: rel_to_oxygen_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - growth_habit_enum: - name: growth_habit_enum + aerobe: + text: aerobe + anaerobe: + text: anaerobe + facultative: + text: facultative + microaerophilic: + text: microaerophilic + microanaerobe: + text: microanaerobe + obligate aerobe: + text: obligate aerobe + obligate anaerobe: + text: obligate anaerobe + host_sex_enum: + name: host_sex_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate - hc_produced_enum: - name: hc_produced_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Oil: - text: Oil - Gas-Condensate: - text: Gas-Condensate - Gas: - text: Gas - Bitumen: - text: Bitumen - Coalbed Methane: - text: Coalbed Methane - other: - text: other - train_stop_loc_enum: - name: train_stop_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - tidal_stage_enum: - name: tidal_stage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - samp_weather_enum: - name: samp_weather_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - clear sky: - text: clear sky - cloudy: - text: cloudy - foggy: - text: foggy - hail: - text: hail - rain: - text: rain - snow: - text: snow - sleet: - text: sleet - sunny: - text: sunny - windy: - text: windy - floor_water_mold_enum: - name: floor_water_mold_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - train_stat_loc_enum: - name: train_stat_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside - indoor_space_enum: - name: indoor_space_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator - int_wall_cond_enum: - name: int_wall_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - building_setting_enum: - name: building_setting_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - fao_class_enum: - name: fao_class_enum + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + fao_class_enum: + name: fao_class_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: Acrisols: @@ -2382,284 +2564,6 @@ enums: text: Vertisols Yermosols: text: Yermosols - quad_pos_enum: - name: quad_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - door_mat_enum: - name: door_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - aluminum: - text: aluminum - cellular PVC: - text: cellular PVC - engineered plastic: - text: engineered plastic - fiberboard: - text: fiberboard - fiberglass: - text: fiberglass - metal: - text: metal - thermoplastic alloy: - text: thermoplastic alloy - vinyl: - text: vinyl - wood: - text: wood - wood/plastic composite: - text: wood/plastic composite - wall_surf_treatment_enum: - name: wall_surf_treatment_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - painted: - text: painted - wall paper: - text: wall paper - no treatment: - text: no treatment - paneling: - text: paneling - stucco: - text: stucco - fabric: - text: fabric - sediment_type_enum: - name: sediment_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - biogenous: - text: biogenous - cosmogenous: - text: cosmogenous - hydrogenous: - text: hydrogenous - lithogenous: - text: lithogenous - sr_dep_env_enum: - name: sr_dep_env_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - window_cond_enum: - name: window_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - room_loc_enum: - name: room_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - handidness_enum: - name: handidness_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - heat_deliv_loc_enum: - name: heat_deliv_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - samp_collect_point_enum: - name: samp_collect_point_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank - other: - text: other - depos_env_enum: - name: depos_env_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - wall_texture_enum: - name: wall_texture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - ? '' - : text: '' - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - ext_wall_orient_enum: - name: ext_wall_orient_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - water_feat_type_enum: - name: water_feat_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - floor_struc_enum: - name: floor_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed - concrete: - text: concrete - window_vert_pos_enum: - name: window_vert_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high specific_enum: name: specific_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2676,54 +2580,38 @@ enums: text: design photos: text: photos - lithology_enum: - name: lithology_enum + plant_growth_med_enum: + name: plant_growth_med_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + other artificial liquid medium: + text: other artificial liquid medium + other artificial solid medium: + text: other artificial solid medium + peat moss: + text: peat moss + perlite: + text: perlite + pumice: + text: pumice + sand: + text: sand + soil: + text: soil + vermiculite: + text: vermiculite + water: + text: water + oxy_stat_samp_enum: + name: oxy_stat_samp_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + aerobic: + text: aerobic + anaerobic: + text: anaerobic other: text: other - rel_to_oxygen_enum: - name: rel_to_oxygen_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - aerobe: - text: aerobe - anaerobe: - text: anaerobe - facultative: - text: facultative - microaerophilic: - text: microaerophilic - microanaerobe: - text: microanaerobe - obligate aerobe: - text: obligate aerobe - obligate anaerobe: - text: obligate anaerobe window_loc_enum: name: window_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2736,6 +2624,20 @@ enums: text: east west: text: west + shading_device_cond_enum: + name: shading_device_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear organism_count_enum: name: organism_count_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2746,16 +2648,88 @@ enums: text: MPN other: text: other - window_type_enum: - name: window_type_enum + build_docs_enum: + name: build_docs_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + samp_weather_enum: + name: samp_weather_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + clear sky: + text: clear sky + cloudy: + text: cloudy + foggy: + text: foggy + hail: + text: hail + rain: + text: rain + snow: + text: snow + sleet: + text: sleet + sunny: + text: sunny + windy: + text: windy + ext_window_orient_enum: + name: ext_window_orient_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + furniture_enum: + name: furniture_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks gender_restroom_enum: name: gender_restroom_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2772,174 +2746,182 @@ enums: text: male and female unisex: text: unisex - occup_document_enum: - name: occup_document_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - automated count: - text: automated count - estimate: - text: estimate - manual count: - text: manual count - videos: - text: videos - sr_geol_age_enum: - name: sr_geol_age_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - wall_finish_mat_enum: - name: wall_finish_mat_enum + build_occup_type_enum: + name: build_occup_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard metal: text: metal - masonry: - text: masonry - arch_struc_enum: - name: arch_struc_enum + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - light_type_enum: - name: light_type_enum + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + door_mat_enum: + name: door_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - door_type_metal_enum: - name: door_type_metal_enum + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard + fiberglass: + text: fiberglass + metal: + text: metal + thermoplastic alloy: + text: thermoplastic alloy + vinyl: + text: vinyl + wood: + text: wood + wood/plastic composite: + text: wood/plastic composite + ceil_type_enum: + name: ceil_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate - ceil_texture_enum: - name: ceil_texture_enum + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + heat_deliv_loc_enum: + name: heat_deliv_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - rel_samp_loc_enum: - name: rel_samp_loc_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + floor_finish_mat_enum: + name: floor_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - door_comp_type_enum: - name: door_comp_type_enum + tile: + text: tile + wood strip or parquet: + text: wood strip or parquet + carpet: + text: carpet + rug: + text: rug + laminate wood: + text: laminate wood + lineoleum: + text: lineoleum + vinyl composition tile: + text: vinyl composition tile + sheet vinyl: + text: sheet vinyl + stone: + text: stone + bamboo: + text: bamboo + cork: + text: cork + terrazo: + text: terrazo + concrete: + text: concrete + none: + text: none + sealed: + text: sealed + clear finish: + text: clear finish + paint: + text: paint + none or unfinished: + text: none or unfinished + samp_subtype_enum: + name: samp_subtype_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable + other: + text: other slots: zinc: name: zinc @@ -16784,45 +16766,45 @@ slots: slot_uri: MIXS:0000156 multivalued: false range: QuantityValue - has numeric value: - name: has numeric value + has raw value: + name: has raw value from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + string_serialization: '{has numeric value} {has unit}' owner: QuantityValue - range: double - core field: - name: core field - description: basic fields + investigation field: + name: investigation field + description: field describing aspect of the investigation/study to which the sample + belongs from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc abstract: true + has unit: + name: has unit + description: Example "m" + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + owner: QuantityValue sequencing field: name: sequencing field from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc abstract: true - environment field: - name: environment field - description: field describing environmental aspect of a sample + core field: + name: core field + description: basic fields from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc abstract: true - has raw value: - name: has raw value + has numeric value: + name: has numeric value from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - string_serialization: '{has numeric value} {has unit}' owner: QuantityValue - has unit: - name: has unit - description: Example "m" + range: double + environment field: + name: environment field + description: field describing environmental aspect of a sample from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - owner: QuantityValue + abstract: true nucleic acid sequence source field: name: nucleic acid sequence source field from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc abstract: true - investigation field: - name: investigation field - description: field describing aspect of the investigation/study to which the sample - belongs - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - abstract: true has_part: name: has_part from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc diff --git a/project/nmdc_schema_merged.yaml b/project/nmdc_schema_merged.yaml index 0c7abe5ad0..2ab4a1241d 100644 --- a/project/nmdc_schema_merged.yaml +++ b/project/nmdc_schema_merged.yaml @@ -23,141 +23,123 @@ id: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema version: v7.4.13 license: https://creativecommons.org/publicdomain/zero/1.0/ prefixes: - COG: - prefix_prefix: COG - prefix_reference: https://unknown.to.linter.org/ - EC: - prefix_prefix: EC - prefix_reference: https://unknown.to.linter.org/ EFO: prefix_prefix: EFO prefix_reference: http://identifiers.org/efo/ - GOLD: - prefix_prefix: GOLD - prefix_reference: http://identifiers.org/gold/ - IMG.TAXON: - prefix_prefix: IMG.TAXON - prefix_reference: http://identifiers.org/img.taxon/ ISA: prefix_prefix: ISA prefix_reference: https://unknown.to.linter.org/ - MS: - prefix_prefix: MS - prefix_reference: http://purl.obolibrary.org/obo/MS_ - MetaCyc: - prefix_prefix: MetaCyc - prefix_reference: https://identifiers.org/metacyc.reaction/ - MetaNetX: - prefix_prefix: MetaNetX - prefix_reference: https://unknown.to.linter.org/ NCIT: prefix_prefix: NCIT prefix_reference: http://purl.obolibrary.org/obo/NCIT_ OBI: prefix_prefix: OBI prefix_reference: http://purl.obolibrary.org/obo/OBI_ - RetroRules: - prefix_prefix: RetroRules - prefix_reference: https://unknown.to.linter.org/ - UniProtKB: - prefix_prefix: UniProtKB - prefix_reference: https://identifiers.org/uniprot/ bare: prefix_prefix: bare prefix_reference: https://unknown.to.linter.org/ - biolink: - prefix_prefix: biolink - prefix_reference: https://w3id.org/biolink/vocab/ - dcterms: - prefix_prefix: dcterms - prefix_reference: http://purl.org/dc/terms/ - emsl: - prefix_prefix: emsl - prefix_reference: https://unknown.to.linter.org/ - gtpo: - prefix_prefix: gtpo - prefix_reference: https://unknown.to.linter.org/ - igsn: - prefix_prefix: igsn - prefix_reference: https://app.geosamples.org/sample/igsn/ - insdc.srs: - prefix_prefix: insdc.srs - prefix_reference: https://unknown.to.linter.org/ - jgi: - prefix_prefix: jgi - prefix_reference: https://unknown.to.linter.org/ linkml: prefix_prefix: linkml prefix_reference: https://w3id.org/linkml/ - mgnify: - prefix_prefix: mgnify - prefix_reference: https://unknown.to.linter.org/ - MIXS: - prefix_prefix: MIXS - prefix_reference: https://w3id.org/mixs/ nmdc: prefix_prefix: nmdc prefix_reference: https://w3id.org/nmdc/ + nmdc_yaml: + prefix_prefix: nmdc_yaml + prefix_reference: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/ prov: prefix_prefix: prov prefix_reference: http://www.w3.org/ns/prov# - qud: - prefix_prefix: qud - prefix_reference: http://qudt.org/1.1/schema/qudt# rdf: prefix_prefix: rdf prefix_reference: http://www.w3.org/1999/02/22-rdf-syntax-ns# rdfs: prefix_prefix: rdfs prefix_reference: http://www.w3.org/2000/01/rdf-schema# - schema: - prefix_prefix: schema - prefix_reference: http://schema.org/ skos: prefix_prefix: skos prefix_reference: http://www.w3.org/2004/02/skos/core# - wgs84: - prefix_prefix: wgs84 - prefix_reference: http://www.w3.org/2003/01/geo/wgs84_pos# xsd: prefix_prefix: xsd prefix_reference: http://www.w3.org/2001/XMLSchema# + jgi: + prefix_prefix: jgi + prefix_reference: https://unknown.to.linter.org/ + dcterms: + prefix_prefix: dcterms + prefix_reference: http://purl.org/dc/terms/ KEGG.COMPOUND: prefix_prefix: KEGG.COMPOUND prefix_reference: http://identifiers.org/kegg.compound/ - igsnvoc: - prefix_prefix: igsnvoc - prefix_reference: https://igsn.org/voc/v1/ + UniProtKB: + prefix_prefix: UniProtKB + prefix_reference: https://identifiers.org/uniprot/ + biolink: + prefix_prefix: biolink + prefix_reference: https://w3id.org/biolink/vocab/ + gtpo: + prefix_prefix: gtpo + prefix_reference: https://unknown.to.linter.org/ + qud: + prefix_prefix: qud + prefix_reference: http://qudt.org/1.1/schema/qudt# + schema: + prefix_prefix: schema + prefix_reference: http://schema.org/ sio: prefix_prefix: sio prefix_reference: http://semanticscience.org/resource/SIO_ + wgs84: + prefix_prefix: wgs84 + prefix_reference: http://www.w3.org/2003/01/geo/wgs84_pos# shex: prefix_prefix: shex prefix_reference: http://www.w3.org/ns/shex# + GOLD: + prefix_prefix: GOLD + prefix_reference: http://identifiers.org/gold/ CHEBI: prefix_prefix: CHEBI prefix_reference: http://purl.obolibrary.org/obo/CHEBI_ CHMO: prefix_prefix: CHMO prefix_reference: http://purl.obolibrary.org/obo/CHMO_ + MIXS: + prefix_prefix: MIXS + prefix_reference: https://w3id.org/mixs/ + COG: + prefix_prefix: COG + prefix_reference: https://unknown.to.linter.org/ + EC: + prefix_prefix: EC + prefix_reference: https://unknown.to.linter.org/ GO: prefix_prefix: GO prefix_reference: http://purl.obolibrary.org/obo/GO_ - KEGG_PATHWAY: - prefix_prefix: KEGG_PATHWAY - prefix_reference: http://identifiers.org/kegg.pathway/ + KEGG.ORTHOLOGY: + prefix_prefix: KEGG.ORTHOLOGY + prefix_reference: http://identifiers.org/kegg.orthology/ KEGG.REACTION: prefix_prefix: KEGG.REACTION prefix_reference: http://identifiers.org/kegg.reaction/ + KEGG_PATHWAY: + prefix_prefix: KEGG_PATHWAY + prefix_reference: http://identifiers.org/kegg.pathway/ + MetaCyc: + prefix_prefix: MetaCyc + prefix_reference: https://identifiers.org/metacyc.reaction/ + MetaNetX: + prefix_prefix: MetaNetX + prefix_reference: https://unknown.to.linter.org/ RHEA: prefix_prefix: RHEA prefix_reference: http://identifiers.org/rhea/ + RetroRules: + prefix_prefix: RetroRules + prefix_reference: https://unknown.to.linter.org/ SEED: prefix_prefix: SEED prefix_reference: http://identifiers.org/seed/ - KEGG.ORTHOLOGY: - prefix_prefix: KEGG.ORTHOLOGY - prefix_reference: http://identifiers.org/kegg.orthology/ emit_prefixes: - rdf - rdfs @@ -198,22 +180,22 @@ subsets: mixs_environmental_triad: name: mixs_environmental_triad title: MIxS Environmental Triad - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml mixs extension: name: mixs extension - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml checklist: name: checklist description: A MIxS checklist. These can be combined with packages - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml package: name: package description: A MIxS package. These can be combined with checklists - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml checklist_package_combination: name: checklist_package_combination description: A combination of a checklist and a package - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml types: bytes: name: bytes @@ -993,23 +975,123 @@ enums: text: soil water_extract_soil: text: water_extract_soil - heat_cool_type_enum: - name: heat_cool_type_enum - from_schema: https://microbiomedata/schema/mixs + occup_document_enum: + name: occup_document_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + sediment_type_enum: + name: sediment_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + biogenous: + text: biogenous + cosmogenous: + text: cosmogenous + hydrogenous: + text: hydrogenous + lithogenous: + text: lithogenous + ext_wall_orient_enum: + name: ext_wall_orient_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + train_line_enum: + name: train_line_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + red: + text: red + green: + text: green + orange: + text: orange + building_setting_enum: + name: building_setting_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + room_samp_pos_enum: + name: room_samp_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + wall_loc_enum: + name: wall_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + samp_md_enum: + name: samp_md_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL + other: + text: other cur_land_use_enum: name: cur_land_use_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: cities: text: cities @@ -1082,41 +1164,65 @@ enums: text: swamp (permanent or semi-permanent water body dominated by woody plants) crop trees (nuts,fruit,christmas trees,nursery trees): text: crop trees (nuts,fruit,christmas trees,nursery trees) - mech_struc_enum: - name: mech_struc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus - hcr_geol_age_enum: - name: hcr_geol_age_enum - from_schema: https://microbiomedata/schema/mixs + train_stat_loc_enum: + name: train_stat_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside + door_direct_enum: + name: door_direct_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + floor_water_mold_enum: + name: floor_water_mold_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + hcr_geol_age_enum: + name: hcr_geol_age_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: text: Cretaceous Devonian: text: Devonian @@ -1144,99 +1250,49 @@ enums: text: Triassic other: text: other - ceil_finish_mat_enum: - name: ceil_finish_mat_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - host_sex_enum: - name: host_sex_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - biol_stat_enum: - name: biol_stat_enum - from_schema: https://microbiomedata/schema/mixs + surf_air_cont_enum: + name: surf_air_cont_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - season_use_enum: - name: season_use_enum - from_schema: https://microbiomedata/schema/mixs + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + drawings_enum: + name: drawings_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - ext_window_orient_enum: - name: ext_window_orient_enum - from_schema: https://microbiomedata/schema/mixs + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + door_loc_enum: + name: door_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: north: text: north @@ -1246,87 +1302,23 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - floor_finish_mat_enum: - name: floor_finish_mat_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - tile: - text: tile - wood strip or parquet: - text: wood strip or parquet - carpet: - text: carpet - rug: - text: rug - laminate wood: - text: laminate wood - lineoleum: - text: lineoleum - vinyl composition tile: - text: vinyl composition tile - sheet vinyl: - text: sheet vinyl - stone: - text: stone - bamboo: - text: bamboo - cork: - text: cork - terrazo: - text: terrazo - concrete: - text: concrete - none: - text: none - sealed: - text: sealed - clear finish: - text: clear finish - paint: - text: paint - none or unfinished: - text: none or unfinished - samp_capt_status_enum: - name: samp_capt_status_enum - from_schema: https://microbiomedata/schema/mixs + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine other: text: other - filter_type_enum: - name: filter_type_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - room_condt_enum: - name: room_condt_enum - from_schema: https://microbiomedata/schema/mixs + room_condt_enum: + name: room_condt_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: new: text: new @@ -1340,9 +1332,75 @@ enums: text: rupture visible signs of mold/mildew: text: visible signs of mold/mildew + samp_dis_stage_enum: + name: samp_dis_stage_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other + quad_pos_enum: + name: quad_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + samp_floor_enum: + name: samp_floor_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + handidness_enum: + name: handidness_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + profile_position_enum: + name: profile_position_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope vis_media_enum: name: vis_media_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: photos: text: photos @@ -1358,25 +1416,153 @@ enums: text: equipment 3D scans: text: 3D scans - door_move_enum: - name: door_move_enum - from_schema: https://microbiomedata/schema/mixs + substructure_type_enum: + name: substructure_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + lithology_enum: + name: lithology_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic + other: + text: other + arch_struc_enum: + name: arch_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + door_type_enum: + name: door_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + sr_kerog_type_enum: + name: sr_kerog_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + ceil_cond_enum: + name: ceil_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown + int_wall_cond_enum: + name: int_wall_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture plant_sex_enum: name: plant_sex_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: Androdioecious: text: Androdioecious @@ -1436,85 +1622,165 @@ enums: text: Trioecious Unisexual: text: Unisexual - door_type_enum: - name: door_type_enum - from_schema: https://microbiomedata/schema/mixs + rel_samp_loc_enum: + name: rel_samp_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - composite: - text: composite - metal: - text: metal - wooden: - text: wooden - surf_material_enum: - name: surf_material_enum - from_schema: https://microbiomedata/schema/mixs + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat + tidal_stage_enum: + name: tidal_stage_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass - metal: - text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile - vinyl: - text: vinyl - wood: - text: wood - tillage_enum: - name: tillage_enum - from_schema: https://microbiomedata/schema/mixs + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - window_cover_enum: - name: window_cover_enum - from_schema: https://microbiomedata/schema/mixs + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample + other: + text: other + sr_lithology_enum: + name: sr_lithology_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - room_connected_enum: - name: room_connected_enum - from_schema: https://microbiomedata/schema/mixs + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + depos_env_enum: + name: depos_env_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic + other: + text: other + sr_geol_age_enum: + name: sr_geol_age_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + hcr_enum: + name: hcr_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir + other: + text: other + room_loc_enum: + name: room_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + room_type_enum: + name: room_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: attic: text: attic @@ -1534,97 +1800,199 @@ enums: text: kitchen mail room: text: mail room - office: - text: office + private office: + text: private office + open office: + text: open office stairwell: text: stairwell - train_line_enum: - name: train_line_enum - from_schema: https://microbiomedata/schema/mixs + ',restroom': + text: ',restroom' + lobby: + text: lobby + vestibule: + text: vestibule + mechanical or electrical room: + text: mechanical or electrical room + data center: + text: data center + laboratory_wet: + text: laboratory_wet + laboratory_dry: + text: laboratory_dry + gymnasium: + text: gymnasium + natatorium: + text: natatorium + auditorium: + text: auditorium + lockers: + text: lockers + cafe: + text: cafe + warehouse: + text: warehouse + growth_habit_enum: + name: growth_habit_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - samp_dis_stage_enum: - name: samp_dis_stage_enum - from_schema: https://microbiomedata/schema/mixs + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + door_comp_type_enum: + name: door_comp_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other - profile_position_enum: - name: profile_position_enum - from_schema: https://microbiomedata/schema/mixs + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic + floor_struc_enum: + name: floor_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - build_docs_enum: - name: build_docs_enum - from_schema: https://microbiomedata/schema/mixs + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + window_cover_enum: + name: window_cover_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - sr_lithology_enum: - name: sr_lithology_enum - from_schema: https://microbiomedata/schema/mixs + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + freq_clean_enum: + name: freq_clean_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually other: text: other + wall_texture_enum: + name: wall_texture_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + window_mat_enum: + name: window_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + clad: + text: clad + fiberglass: + text: fiberglass + metal: + text: metal + vinyl: + text: vinyl + wood: + text: wood + light_type_enum: + name: light_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + season_use_enum: + name: season_use_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + soil_horizon_enum: + name: soil_horizon_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost wall_const_type_enum: name: wall_const_type_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: frame construction: text: frame construction @@ -1638,151 +2006,131 @@ enums: text: modified fire resistive fire resistive: text: fire resistive - oxy_stat_samp_enum: - name: oxy_stat_samp_enum - from_schema: https://microbiomedata/schema/mixs + shading_device_type_enum: + name: shading_device_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - aerobic: - text: aerobic - anaerobic: - text: anaerobic - other: - text: other - plant_growth_med_enum: - name: plant_growth_med_enum - from_schema: https://microbiomedata/schema/mixs + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning + wall_finish_mat_enum: + name: wall_finish_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - other artificial liquid medium: - text: other artificial liquid medium - other artificial solid medium: - text: other artificial solid medium - peat moss: - text: peat moss - perlite: - text: perlite - pumice: - text: pumice - sand: - text: sand - soil: - text: soil - vermiculite: - text: vermiculite - water: - text: water - weekday_enum: - name: weekday_enum - from_schema: https://microbiomedata/schema/mixs + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + water_feat_type_enum: + name: water_feat_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - window_mat_enum: - name: window_mat_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - clad: - text: clad - fiberglass: - text: fiberglass - metal: - text: metal - vinyl: - text: vinyl - wood: - text: wood - furniture_enum: - name: furniture_enum - from_schema: https://microbiomedata/schema/mixs + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall + filter_type_enum: + name: filter_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - ceil_cond_enum: - name: ceil_cond_enum - from_schema: https://microbiomedata/schema/mixs + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + tillage_enum: + name: tillage_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - room_type_enum: - name: room_type_enum - from_schema: https://microbiomedata/schema/mixs + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + wall_surf_treatment_enum: + name: wall_surf_treatment_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - private office: - text: private office - open office: - text: open office - stairwell: - text: stairwell - ',restroom': - text: ',restroom' - lobby: - text: lobby - vestibule: - text: vestibule - mechanical or electrical room: - text: mechanical or electrical room - data center: - text: data center - laboratory_wet: - text: laboratory_wet - laboratory_dry: - text: laboratory_dry - gymnasium: - text: gymnasium - natatorium: - text: natatorium - auditorium: - text: auditorium - lockers: - text: lockers - cafe: - text: cafe - warehouse: - text: warehouse + painted: + text: painted + wall paper: + text: wall paper + no treatment: + text: no treatment + paneling: + text: paneling + stucco: + text: stucco + fabric: + text: fabric floor_cond_enum: name: floor_cond_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: new: text: new @@ -1794,9 +2142,27 @@ enums: text: damaged rupture: text: rupture + weekday_enum: + name: weekday_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday window_horiz_pos_enum: name: window_horiz_pos_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: left: text: left @@ -1804,95 +2170,75 @@ enums: text: middle right: text: right - wall_loc_enum: - name: wall_loc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - freq_clean_enum: - name: freq_clean_enum - from_schema: https://microbiomedata/schema/mixs + window_type_enum: + name: window_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually - other: - text: other - drainage_class_enum: - name: drainage_class_enum - from_schema: https://microbiomedata/schema/mixs + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + mech_struc_enum: + name: mech_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - very poorly: - text: very poorly - poorly: - text: poorly - somewhat poorly: - text: somewhat poorly - moderately well: - text: moderately well - well: - text: well - excessively drained: - text: excessively drained - shading_device_type_enum: - name: shading_device_type_enum - from_schema: https://microbiomedata/schema/mixs + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + surf_material_enum: + name: surf_material_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning - sr_kerog_type_enum: - name: sr_kerog_type_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://microbiomedata/schema/mixs + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass + metal: + text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + door_cond_enum: + name: door_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: damaged: text: damaged @@ -1904,121 +2250,57 @@ enums: text: rupture visible wear: text: visible wear - hcr_enum: - name: hcr_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - ceil_type_enum: - name: ceil_type_enum - from_schema: https://microbiomedata/schema/mixs + biotic_relationship_enum: + name: biotic_relationship_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - samp_subtype_enum: - name: samp_subtype_enum - from_schema: https://microbiomedata/schema/mixs + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + door_move_enum: + name: door_move_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other - build_occup_type_enum: - name: build_occup_type_enum - from_schema: https://microbiomedata/schema/mixs + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + indoor_space_enum: + name: indoor_space_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: + bedroom: + text: bedroom office: text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - drawings_enum: - name: drawings_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - substructure_type_enum: - name: substructure_type_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator indoor_surf_enum: name: indoor_surf_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: cabinet: text: cabinet @@ -2036,113 +2318,59 @@ enums: text: window wall: text: wall - door_loc_enum: - name: door_loc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - samp_md_enum: - name: samp_md_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - biotic_relationship_enum: - name: biotic_relationship_enum - from_schema: https://microbiomedata/schema/mixs + ceil_texture_enum: + name: ceil_texture_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - surf_air_cont_enum: - name: surf_air_cont_enum - from_schema: https://microbiomedata/schema/mixs + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + biol_stat_enum: + name: biol_stat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - samp_floor_enum: - name: samp_floor_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby - door_type_wood_enum: - name: door_type_wood_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - door_direct_enum: - name: door_direct_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - door_cond_enum: - name: door_cond_enum - from_schema: https://microbiomedata/schema/mixs + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_cond_enum: + name: window_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: damaged: text: damaged @@ -2154,39 +2382,9 @@ enums: text: rupture visible wear: text: visible wear - soil_horizon_enum: - name: soil_horizon_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - growth_habit_enum: - name: growth_habit_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate hc_produced_enum: name: hc_produced_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: Oil: text: Oil @@ -2200,138 +2398,122 @@ enums: text: Coalbed Methane other: text: other - train_stop_loc_enum: - name: train_stop_loc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - tidal_stage_enum: - name: tidal_stage_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - samp_weather_enum: - name: samp_weather_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - clear sky: - text: clear sky - cloudy: - text: cloudy - foggy: - text: foggy - hail: - text: hail - rain: - text: rain - snow: - text: snow - sleet: - text: sleet - sunny: - text: sunny - windy: - text: windy - floor_water_mold_enum: - name: floor_water_mold_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - train_stat_loc_enum: - name: train_stat_loc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside - indoor_space_enum: - name: indoor_space_enum - from_schema: https://microbiomedata/schema/mixs + room_connected_enum: + name: room_connected_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bedroom: - text: bedroom - office: - text: office + attic: + text: attic bathroom: text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway + closet: + text: closet + conference room: + text: conference room elevator: text: elevator - int_wall_cond_enum: - name: int_wall_cond_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - building_setting_enum: - name: building_setting_enum - from_schema: https://microbiomedata/schema/mixs + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell + door_type_metal_enum: + name: door_type_metal_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - fao_class_enum: - name: fao_class_enum - from_schema: https://microbiomedata/schema/mixs + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate + door_type_wood_enum: + name: door_type_wood_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Acrisols: - text: Acrisols + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + drainage_class_enum: + name: drainage_class_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + very poorly: + text: very poorly + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + moderately well: + text: moderately well + well: + text: well + excessively drained: + text: excessively drained + rel_to_oxygen_enum: + name: rel_to_oxygen_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + aerobe: + text: aerobe + anaerobe: + text: anaerobe + facultative: + text: facultative + microaerophilic: + text: microaerophilic + microanaerobe: + text: microanaerobe + obligate aerobe: + text: obligate aerobe + obligate anaerobe: + text: obligate anaerobe + host_sex_enum: + name: host_sex_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + fao_class_enum: + name: fao_class_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Acrisols: + text: Acrisols Andosols: text: Andosols Arenosols: @@ -2382,287 +2564,9 @@ enums: text: Vertisols Yermosols: text: Yermosols - quad_pos_enum: - name: quad_pos_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - door_mat_enum: - name: door_mat_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - aluminum: - text: aluminum - cellular PVC: - text: cellular PVC - engineered plastic: - text: engineered plastic - fiberboard: - text: fiberboard - fiberglass: - text: fiberglass - metal: - text: metal - thermoplastic alloy: - text: thermoplastic alloy - vinyl: - text: vinyl - wood: - text: wood - wood/plastic composite: - text: wood/plastic composite - wall_surf_treatment_enum: - name: wall_surf_treatment_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - painted: - text: painted - wall paper: - text: wall paper - no treatment: - text: no treatment - paneling: - text: paneling - stucco: - text: stucco - fabric: - text: fabric - sediment_type_enum: - name: sediment_type_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - biogenous: - text: biogenous - cosmogenous: - text: cosmogenous - hydrogenous: - text: hydrogenous - lithogenous: - text: lithogenous - sr_dep_env_enum: - name: sr_dep_env_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - window_cond_enum: - name: window_cond_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - room_loc_enum: - name: room_loc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - handidness_enum: - name: handidness_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - heat_deliv_loc_enum: - name: heat_deliv_loc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - samp_collect_point_enum: - name: samp_collect_point_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank - other: - text: other - depos_env_enum: - name: depos_env_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - wall_texture_enum: - name: wall_texture_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - ? '' - : text: '' - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - ext_wall_orient_enum: - name: ext_wall_orient_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - water_feat_type_enum: - name: water_feat_type_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - floor_struc_enum: - name: floor_struc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed - concrete: - text: concrete - window_vert_pos_enum: - name: window_vert_pos_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high specific_enum: name: specific_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: operation: text: operation @@ -2675,58 +2579,42 @@ enums: design: text: design photos: - text: photos - lithology_enum: - name: lithology_enum - from_schema: https://microbiomedata/schema/mixs + text: photos + plant_growth_med_enum: + name: plant_growth_med_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + other artificial liquid medium: + text: other artificial liquid medium + other artificial solid medium: + text: other artificial solid medium + peat moss: + text: peat moss + perlite: + text: perlite + pumice: + text: pumice + sand: + text: sand + soil: + text: soil + vermiculite: + text: vermiculite + water: + text: water + oxy_stat_samp_enum: + name: oxy_stat_samp_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + aerobic: + text: aerobic + anaerobic: + text: anaerobic other: text: other - rel_to_oxygen_enum: - name: rel_to_oxygen_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - aerobe: - text: aerobe - anaerobe: - text: anaerobe - facultative: - text: facultative - microaerophilic: - text: microaerophilic - microanaerobe: - text: microanaerobe - obligate aerobe: - text: obligate aerobe - obligate anaerobe: - text: obligate anaerobe window_loc_enum: name: window_loc_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: north: text: north @@ -2736,9 +2624,23 @@ enums: text: east west: text: west + shading_device_cond_enum: + name: shading_device_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear organism_count_enum: name: organism_count_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: ATP: text: ATP @@ -2746,19 +2648,91 @@ enums: text: MPN other: text: other - window_type_enum: - name: window_type_enum - from_schema: https://microbiomedata/schema/mixs + build_docs_enum: + name: build_docs_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + samp_weather_enum: + name: samp_weather_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + clear sky: + text: clear sky + cloudy: + text: cloudy + foggy: + text: foggy + hail: + text: hail + rain: + text: rain + snow: + text: snow + sleet: + text: sleet + sunny: + text: sunny + windy: + text: windy + ext_window_orient_enum: + name: ext_window_orient_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + furniture_enum: + name: furniture_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks gender_restroom_enum: name: gender_restroom_enum - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: all gender: text: all gender @@ -2772,174 +2746,182 @@ enums: text: male and female unisex: text: unisex - occup_document_enum: - name: occup_document_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - automated count: - text: automated count - estimate: - text: estimate - manual count: - text: manual count - videos: - text: videos - sr_geol_age_enum: - name: sr_geol_age_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://microbiomedata/schema/mixs + build_occup_type_enum: + name: build_occup_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate wood: text: wood + heat_cool_type_enum: + name: heat_cool_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + door_mat_enum: + name: door_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard + fiberglass: + text: fiberglass metal: text: metal - masonry: - text: masonry - arch_struc_enum: - name: arch_struc_enum - from_schema: https://microbiomedata/schema/mixs + thermoplastic alloy: + text: thermoplastic alloy + vinyl: + text: vinyl + wood: + text: wood + wood/plastic composite: + text: wood/plastic composite + ceil_type_enum: + name: ceil_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - light_type_enum: - name: light_type_enum - from_schema: https://microbiomedata/schema/mixs + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + heat_deliv_loc_enum: + name: heat_deliv_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights + north: + text: north + south: + text: south + east: + text: east + west: + text: west + floor_finish_mat_enum: + name: floor_finish_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + tile: + text: tile + wood strip or parquet: + text: wood strip or parquet + carpet: + text: carpet + rug: + text: rug + laminate wood: + text: laminate wood + lineoleum: + text: lineoleum + vinyl composition tile: + text: vinyl composition tile + sheet vinyl: + text: sheet vinyl + stone: + text: stone + bamboo: + text: bamboo + cork: + text: cork + terrazo: + text: terrazo + concrete: + text: concrete none: text: none - door_type_metal_enum: - name: door_type_metal_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate - ceil_texture_enum: - name: ceil_texture_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - rel_samp_loc_enum: - name: rel_samp_loc_enum - from_schema: https://microbiomedata/schema/mixs - permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - door_comp_type_enum: - name: door_comp_type_enum - from_schema: https://microbiomedata/schema/mixs + sealed: + text: sealed + clear finish: + text: clear finish + paint: + text: paint + none or unfinished: + text: none or unfinished + samp_subtype_enum: + name: samp_subtype_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable + other: + text: other slots: zinc: name: zinc @@ -5802,7 +5784,7 @@ slots: title: absolute air humidity examples: - value: 9 gram per gram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - absolute air humidity is_a: core field @@ -5825,7 +5807,7 @@ slots: title: secondary and tertiary recovery methods and start date examples: - value: Polymer Addition;2018-06-21T14:30Z - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - secondary and tertiary recovery methods and start date is_a: core field @@ -5846,7 +5828,7 @@ slots: title: additional info examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - additional info is_a: core field @@ -5867,7 +5849,7 @@ slots: title: address examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - address is_a: core field @@ -5889,7 +5871,7 @@ slots: title: adjacent rooms examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - adjacent rooms is_a: core field @@ -5912,7 +5894,7 @@ slots: title: aerospace structure examples: - value: plane - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - aerospace structure is_a: core field @@ -5936,7 +5918,7 @@ slots: title: history/agrochemical additions examples: - value: roundup;5 milligram per liter;2018-06-21 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/agrochemical additions is_a: core field @@ -5962,7 +5944,7 @@ slots: title: air particulate matter concentration examples: - value: PM2.5;10 microgram per cubic meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - air particulate matter concentration is_a: core field @@ -5986,7 +5968,7 @@ slots: title: air temperature examples: - value: 20 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - air temperature is_a: core field @@ -6012,7 +5994,7 @@ slots: title: air temperature regimen examples: - value: 25 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - air temperature regimen is_a: core field @@ -6036,7 +6018,7 @@ slots: title: extreme_unusual_properties/Al saturation examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - extreme_unusual_properties/Al saturation is_a: core field @@ -6056,7 +6038,7 @@ slots: title: extreme_unusual_properties/Al saturation method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - extreme_unusual_properties/Al saturation method is_a: core field @@ -6081,7 +6063,7 @@ slots: title: alkalinity examples: - value: 50 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - alkalinity is_a: core field @@ -6101,7 +6083,7 @@ slots: title: alkalinity method examples: - value: titration - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - alkalinity method is_a: core field @@ -6125,7 +6107,7 @@ slots: title: alkyl diethers examples: - value: 0.005 mole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - alkyl diethers is_a: core field @@ -6147,7 +6129,7 @@ slots: title: altitude examples: - value: 100 meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - altitude is_a: environment field @@ -6170,7 +6152,7 @@ slots: title: aminopeptidase activity examples: - value: 0.269 mole per liter per hour - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - aminopeptidase activity is_a: core field @@ -6193,7 +6175,7 @@ slots: title: ammonium examples: - value: 1.5 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ammonium is_a: core field @@ -6217,7 +6199,7 @@ slots: title: amount of light examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - amount of light is_a: core field @@ -6239,7 +6221,7 @@ slots: title: ancestral data examples: - value: A/3*B - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ancestral data is_a: core field @@ -6264,7 +6246,7 @@ slots: title: mean annual precipitation examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mean annual precipitation is_a: core field @@ -6287,7 +6269,7 @@ slots: title: mean annual temperature examples: - value: 12.5 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mean annual temperature is_a: core field @@ -6314,7 +6296,7 @@ slots: title: antibiotic regimen examples: - value: penicillin;5 milligram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - antibiotic regimen is_a: core field @@ -6340,7 +6322,7 @@ slots: title: API gravity examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - API gravity is_a: core field @@ -6361,7 +6343,7 @@ slots: title: architectural structure examples: - value: shed - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - architectural structure is_a: core field @@ -6388,7 +6370,7 @@ slots: title: aromatics wt% examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - aromatics wt% is_a: core field @@ -6416,7 +6398,7 @@ slots: title: asphaltenes wt% examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - asphaltenes wt% is_a: core field @@ -6437,7 +6419,7 @@ slots: title: atmospheric data examples: - value: wind speed;9 knots - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - atmospheric data is_a: core field @@ -6462,7 +6444,7 @@ slots: title: average dew point examples: - value: 25.5 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - average dew point is_a: core field @@ -6483,7 +6465,7 @@ slots: title: average daily occupancy examples: - value: '2' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - average daily occupancy is_a: core field @@ -6507,7 +6489,7 @@ slots: title: average temperature examples: - value: 12.5 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - average temperature is_a: core field @@ -6530,7 +6512,7 @@ slots: title: bacterial production examples: - value: 5 milligram per cubic meter per day - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - bacterial production is_a: core field @@ -6553,7 +6535,7 @@ slots: title: bacterial respiration examples: - value: 300 micromole oxygen per liter per hour - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - bacterial respiration is_a: core field @@ -6576,7 +6558,7 @@ slots: title: bacterial carbon production examples: - value: 2.53 microgram per liter per hour - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - bacterial carbon production is_a: core field @@ -6600,7 +6582,7 @@ slots: title: barometric pressure examples: - value: 5 millibar - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - barometric pressure is_a: core field @@ -6620,7 +6602,7 @@ slots: title: basin name examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - basin name is_a: core field @@ -6641,7 +6623,7 @@ slots: title: bathroom count examples: - value: '1' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - bathroom count is_a: core field @@ -6661,7 +6643,7 @@ slots: title: bedroom count examples: - value: '2' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - bedroom count is_a: core field @@ -6684,7 +6666,7 @@ slots: title: benzene examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - benzene is_a: core field @@ -6709,7 +6691,7 @@ slots: title: biochemical oxygen demand examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - biochemical oxygen demand is_a: core field @@ -6730,7 +6712,7 @@ slots: title: biocide administration examples: - value: ALPHA 1427;Baker Hughes;2008-01-23 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - biocide administration is_a: core field @@ -6756,7 +6738,7 @@ slots: title: biocide administration method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - biocide administration method is_a: core field @@ -6777,7 +6759,7 @@ slots: title: biological status examples: - value: natural - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - biological status is_a: core field @@ -6801,7 +6783,7 @@ slots: title: biomass examples: - value: total;20 gram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - biomass is_a: core field @@ -6823,7 +6805,7 @@ slots: title: biotic regimen examples: - value: sample inoculated with Rhizobium spp. Culture - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - biotic regimen is_a: core field @@ -6844,7 +6826,7 @@ slots: title: observed biotic relationship examples: - value: free living - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - observed biotic relationship is_a: nucleic acid sequence source field @@ -6867,7 +6849,7 @@ slots: title: bishomohopanol examples: - value: 14 microgram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - bishomohopanol is_a: core field @@ -6890,7 +6872,7 @@ slots: title: host blood pressure diastolic examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host blood pressure diastolic is_a: core field @@ -6913,7 +6895,7 @@ slots: title: host blood pressure systolic examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host blood pressure systolic is_a: core field @@ -6936,7 +6918,7 @@ slots: title: bromide examples: - value: 0.05 parts per million - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - bromide is_a: core field @@ -6956,7 +6938,7 @@ slots: title: design, construction, and operation documents examples: - value: maintenance plans - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - design, construction, and operation documents is_a: core field @@ -6977,7 +6959,7 @@ slots: title: building occupancy type examples: - value: market - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - building occupancy type is_a: core field @@ -6997,7 +6979,7 @@ slots: title: building setting examples: - value: rural - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - building setting is_a: core field @@ -7020,7 +7002,7 @@ slots: title: built structure age examples: - value: '15' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - built structure age is_a: core field @@ -7041,7 +7023,7 @@ slots: title: built structure setting examples: - value: rural - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - built structure setting is_a: core field @@ -7063,7 +7045,7 @@ slots: title: built structure type examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - built structure type is_a: core field @@ -7087,7 +7069,7 @@ slots: title: calcium examples: - value: 0.2 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - calcium is_a: core field @@ -7110,7 +7092,7 @@ slots: title: carbon dioxide examples: - value: 410 parts per million - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - carbon dioxide is_a: core field @@ -7133,7 +7115,7 @@ slots: title: carbon monoxide examples: - value: 0.1 parts per million - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - carbon monoxide is_a: core field @@ -7153,7 +7135,7 @@ slots: title: carbon/nitrogen ratio examples: - value: '0.417361111' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - carbon/nitrogen ratio is_a: core field @@ -7176,7 +7158,7 @@ slots: title: ceiling area examples: - value: 25 square meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling area is_a: core field @@ -7197,7 +7179,7 @@ slots: title: ceiling condition examples: - value: damaged - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling condition is_a: core field @@ -7217,7 +7199,7 @@ slots: title: ceiling finish material examples: - value: stucco - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling finish material is_a: core field @@ -7237,7 +7219,7 @@ slots: title: ceiling structure examples: - value: concrete - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling structure is_a: core field @@ -7258,7 +7240,7 @@ slots: title: ceiling texture examples: - value: popcorn - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling texture is_a: core field @@ -7284,7 +7266,7 @@ slots: title: ceiling thermal mass examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling thermal mass is_a: core field @@ -7304,7 +7286,7 @@ slots: title: ceiling type examples: - value: coffered - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling type is_a: core field @@ -7324,7 +7306,7 @@ slots: title: ceiling signs of water/mold examples: - value: presence of mold visible - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ceiling signs of water/mold is_a: core field @@ -7348,7 +7330,7 @@ slots: title: chemical administration examples: - value: agar [CHEBI:2509];2018-05-11T20:00Z - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chemical administration is_a: core field @@ -7375,7 +7357,7 @@ slots: title: chemical mutagen examples: - value: nitrous acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chemical mutagen is_a: core field @@ -7401,7 +7383,7 @@ slots: title: chemical oxygen demand examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chemical oxygen demand is_a: core field @@ -7426,7 +7408,7 @@ slots: title: chemical treatment method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chemical treatment method is_a: core field @@ -7451,7 +7433,7 @@ slots: title: chemical treatment examples: - value: ACCENT 1125;DOW;2010-11-17 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chemical treatment is_a: core field @@ -7471,7 +7453,7 @@ slots: title: chimera check software examples: - value: uchime;v4.1;default parameters - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chimera check software is_a: sequencing field @@ -7495,7 +7477,7 @@ slots: title: chloride examples: - value: 5000 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chloride is_a: core field @@ -7518,7 +7500,7 @@ slots: title: chlorophyll examples: - value: 5 milligram per cubic meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - chlorophyll is_a: core field @@ -7541,7 +7523,7 @@ slots: title: climate environment examples: - value: tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - climate environment is_a: core field @@ -7562,7 +7544,7 @@ slots: title: collection date examples: - value: 2018-05-11T10:00:00+01:00; 2018-05-11 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - collection date is_a: environment field @@ -7585,7 +7567,7 @@ slots: title: conductivity examples: - value: 10 milliSiemens per centimeter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - conductivity is_a: core field @@ -7605,7 +7587,7 @@ slots: title: cooling system identifier examples: - value: '12345' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - cooling system identifier is_a: core field @@ -7625,7 +7607,7 @@ slots: title: history/crop rotation examples: - value: yes;R2/2017-01-01/2018-12-31/P6M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/crop rotation is_a: core field @@ -7649,7 +7631,7 @@ slots: title: culture rooting medium examples: - value: http://himedialabs.com/TD/PT158.pdf - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - culture rooting medium is_a: core field @@ -7670,7 +7652,7 @@ slots: title: current land use examples: - value: conifers - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - current land use is_a: core field @@ -7691,7 +7673,7 @@ slots: title: current vegetation examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - current vegetation is_a: core field @@ -7712,7 +7694,7 @@ slots: title: current vegetation method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - current vegetation method is_a: core field @@ -7733,7 +7715,7 @@ slots: title: date last rain examples: - value: 2018-05-11:T14:30Z - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - date last rain is_a: core field @@ -7757,7 +7739,7 @@ slots: title: density examples: - value: 1000 kilogram per cubic meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - density is_a: core field @@ -7778,7 +7760,7 @@ slots: title: depositional environment examples: - value: Continental - Alluvial - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - depositional environment is_a: core field @@ -7797,7 +7779,7 @@ slots: title: depth examples: - value: 10 meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - depth is_a: environment field @@ -7821,7 +7803,7 @@ slots: title: dew point examples: - value: 22 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dew point is_a: core field @@ -7845,7 +7827,7 @@ slots: title: diether lipids examples: - value: 0.2 nanogram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - diether lipids is_a: core field @@ -7870,7 +7852,7 @@ slots: title: dissolved carbon dioxide examples: - value: 5 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved carbon dioxide is_a: core field @@ -7893,7 +7875,7 @@ slots: title: dissolved hydrogen examples: - value: 0.3 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved hydrogen is_a: core field @@ -7917,7 +7899,7 @@ slots: title: dissolved inorganic carbon examples: - value: 2059 micromole per kilogram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved inorganic carbon is_a: core field @@ -7940,7 +7922,7 @@ slots: title: dissolved inorganic nitrogen examples: - value: 761 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved inorganic nitrogen is_a: core field @@ -7963,7 +7945,7 @@ slots: title: dissolved inorganic phosphorus examples: - value: 56.5 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved inorganic phosphorus is_a: core field @@ -7986,7 +7968,7 @@ slots: title: dissolved iron examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved iron is_a: core field @@ -8010,7 +7992,7 @@ slots: title: dissolved organic carbon examples: - value: 197 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved organic carbon is_a: core field @@ -8034,7 +8016,7 @@ slots: title: dissolved organic nitrogen examples: - value: 0.05 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved organic nitrogen is_a: core field @@ -8057,7 +8039,7 @@ slots: title: dissolved oxygen examples: - value: 175 micromole per kilogram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved oxygen is_a: core field @@ -8081,7 +8063,7 @@ slots: title: dissolved oxygen in fluids examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - dissolved oxygen in fluids is_a: core field @@ -8101,7 +8083,7 @@ slots: title: door type, composite examples: - value: revolving - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door type, composite is_a: core field @@ -8121,7 +8103,7 @@ slots: title: door condition examples: - value: new - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door condition is_a: core field @@ -8141,7 +8123,7 @@ slots: title: door direction of opening examples: - value: inward - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door direction of opening is_a: core field @@ -8161,7 +8143,7 @@ slots: title: door location examples: - value: north - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door location is_a: core field @@ -8181,7 +8163,7 @@ slots: title: door material examples: - value: wood - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door material is_a: core field @@ -8201,7 +8183,7 @@ slots: title: door movement examples: - value: swinging - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door movement is_a: core field @@ -8224,7 +8206,7 @@ slots: title: door area or size examples: - value: 2.5 square meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door area or size is_a: core field @@ -8244,7 +8226,7 @@ slots: title: door type examples: - value: wooden - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door type is_a: core field @@ -8264,7 +8246,7 @@ slots: title: door type, metal examples: - value: hollow - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door type, metal is_a: core field @@ -8284,7 +8266,7 @@ slots: title: door type, wood examples: - value: battened - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door type, wood is_a: core field @@ -8304,7 +8286,7 @@ slots: title: door signs of water/mold examples: - value: presence of mold visible - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - door signs of water/mold is_a: core field @@ -8330,7 +8312,7 @@ slots: title: downward PAR examples: - value: 28.71 microEinstein per square meter per second - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - downward PAR is_a: core field @@ -8350,7 +8332,7 @@ slots: title: drainage classification examples: - value: well - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - drainage classification is_a: core field @@ -8371,7 +8353,7 @@ slots: title: drawings examples: - value: sketch - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - drawings is_a: core field @@ -8394,7 +8376,7 @@ slots: title: efficiency percent examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - efficiency percent is_a: core field @@ -8414,7 +8396,7 @@ slots: title: elevation examples: - value: 100 meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - elevation is_a: environment field @@ -8434,7 +8416,7 @@ slots: title: elevator count examples: - value: '2' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - elevator count is_a: core field @@ -8459,7 +8441,7 @@ slots: title: emulsions examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - emulsions is_a: core field @@ -8484,7 +8466,7 @@ slots: examples: - value: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water sample from the photic zone in middle of the Atlantic Ocean - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - broad-scale environmental context is_a: environment field @@ -8511,7 +8493,7 @@ slots: various vegetation layers in a forest consider: canopy [ENVO:00000047]|herb and fern layer [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub layer [ENVO:01000336].' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - local environmental context is_a: environment field @@ -8538,7 +8520,7 @@ slots: - value: 'soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating a duck on a pond consider: pond water [ENVO:00002228]|air [ENVO_00002005]' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - environmental medium is_a: environment field @@ -8559,7 +8541,7 @@ slots: title: escalator count examples: - value: '4' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - escalator count is_a: core field @@ -8582,7 +8564,7 @@ slots: title: ethylbenzene examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ethylbenzene is_a: core field @@ -8605,7 +8587,7 @@ slots: title: exposed ductwork examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - exposed ductwork is_a: core field @@ -8625,7 +8607,7 @@ slots: title: exposed pipes examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - exposed pipes is_a: core field @@ -8647,7 +8629,7 @@ slots: title: experimental factor examples: - value: time series design [EFO:EFO_0001779] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - experimental factor is_a: investigation field @@ -8668,7 +8650,7 @@ slots: title: exterior door count examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - exterior door count is_a: core field @@ -8688,7 +8670,7 @@ slots: title: orientations of exterior wall examples: - value: northwest - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - orientations of exterior wall is_a: core field @@ -8708,7 +8690,7 @@ slots: title: orientations of exterior window examples: - value: southwest - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - orientations of exterior window is_a: core field @@ -8728,7 +8710,7 @@ slots: title: history/extreme events examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/extreme events is_a: core field @@ -8749,7 +8731,7 @@ slots: title: soil_taxonomic/FAO classification examples: - value: Luvisols - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil_taxonomic/FAO classification is_a: core field @@ -8776,7 +8758,7 @@ slots: title: fertilizer regimen examples: - value: urea;0.6 milligram per liter;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - fertilizer regimen is_a: core field @@ -8797,7 +8779,7 @@ slots: title: field name examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - field name is_a: core field @@ -8818,7 +8800,7 @@ slots: title: filter type examples: - value: HEPA - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - filter type is_a: core field @@ -8838,7 +8820,7 @@ slots: title: history/fire examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/fire is_a: core field @@ -8858,7 +8840,7 @@ slots: title: fireplace type examples: - value: wood burning - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - fireplace type is_a: core field @@ -8879,7 +8861,7 @@ slots: title: history/flooding examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/flooding is_a: core field @@ -8902,7 +8884,7 @@ slots: title: floor age examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor age is_a: core field @@ -8925,7 +8907,7 @@ slots: title: floor area examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor area is_a: core field @@ -8946,7 +8928,7 @@ slots: title: floor condition examples: - value: new - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor condition is_a: core field @@ -8967,7 +8949,7 @@ slots: title: floor count examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor count is_a: core field @@ -8987,7 +8969,7 @@ slots: title: floor finish material examples: - value: carpet - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor finish material is_a: core field @@ -9008,7 +8990,7 @@ slots: title: floor structure examples: - value: concrete - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor structure is_a: core field @@ -9031,7 +9013,7 @@ slots: title: floor thermal mass examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor thermal mass is_a: core field @@ -9051,7 +9033,7 @@ slots: title: floor signs of water/mold examples: - value: ceiling discoloration - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - floor signs of water/mold is_a: core field @@ -9074,7 +9056,7 @@ slots: title: fluorescence examples: - value: 2.5 volts - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - fluorescence is_a: core field @@ -9095,7 +9077,7 @@ slots: title: frequency of cleaning examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - frequency of cleaning is_a: core field @@ -9115,7 +9097,7 @@ slots: title: frequency of cooking examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - frequency of cooking is_a: core field @@ -9141,7 +9123,7 @@ slots: title: fungicide regimen examples: - value: bifonazole;1 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - fungicide regimen is_a: core field @@ -9162,7 +9144,7 @@ slots: title: furniture examples: - value: chair - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - furniture is_a: core field @@ -9188,7 +9170,7 @@ slots: title: gaseous environment examples: - value: nitric oxide;0.5 micromole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - gaseous environment is_a: core field @@ -9213,7 +9195,7 @@ slots: title: gaseous substances examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - gaseous substances is_a: core field @@ -9234,7 +9216,7 @@ slots: title: gender of restroom examples: - value: male - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - gender of restroom is_a: core field @@ -9257,7 +9239,7 @@ slots: title: genetic modification examples: - value: aox1A transgenic - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - genetic modification is_a: core field @@ -9279,7 +9261,7 @@ slots: title: geographic location (country and/or sea,region) examples: - value: 'USA: Maryland, Bethesda' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - geographic location (country and/or sea,region) is_a: environment field @@ -9303,7 +9285,7 @@ slots: title: glucosidase activity examples: - value: 5 mol per liter per hour - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - glucosidase activity is_a: core field @@ -9324,7 +9306,7 @@ slots: title: gravidity examples: - value: yes;due date:2018-05-11 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - gravidity is_a: core field @@ -9352,7 +9334,7 @@ slots: title: gravity examples: - value: 12 g;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - gravity is_a: core field @@ -9375,7 +9357,7 @@ slots: title: growth facility examples: - value: Growth chamber [CO_715:0000189] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - growth facility is_a: core field @@ -9396,7 +9378,7 @@ slots: title: growth habit examples: - value: spreading - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - growth habit is_a: core field @@ -9423,7 +9405,7 @@ slots: title: growth hormone regimen examples: - value: abscisic acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - growth hormone regimen is_a: core field @@ -9444,7 +9426,7 @@ slots: title: hallway/corridor count examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - hallway/corridor count is_a: core field @@ -9464,7 +9446,7 @@ slots: title: handidness examples: - value: right handedness - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - handidness is_a: core field @@ -9485,7 +9467,7 @@ slots: title: hydrocarbon type produced examples: - value: Gas - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - hydrocarbon type produced is_a: core field @@ -9511,7 +9493,7 @@ slots: title: hydrocarbon resource type examples: - value: Oil Sand - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - hydrocarbon resource type is_a: core field @@ -9535,7 +9517,7 @@ slots: title: formation water salinity examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - formation water salinity is_a: core field @@ -9556,7 +9538,7 @@ slots: title: hydrocarbon resource geological age examples: - value: Silurian - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - hydrocarbon resource geological age is_a: core field @@ -9579,7 +9561,7 @@ slots: title: hydrocarbon resource original pressure examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - hydrocarbon resource original pressure is_a: core field @@ -9603,7 +9585,7 @@ slots: title: hydrocarbon resource original temperature examples: - value: 150-295 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - hydrocarbon resource original temperature is_a: core field @@ -9624,7 +9606,7 @@ slots: title: heating and cooling system type examples: - value: heat pump - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - heating and cooling system type is_a: core field @@ -9644,7 +9626,7 @@ slots: title: heating delivery locations examples: - value: north - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - heating delivery locations is_a: core field @@ -9664,7 +9646,7 @@ slots: title: heating system delivery method examples: - value: radiant - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - heating system delivery method is_a: core field @@ -9685,7 +9667,7 @@ slots: title: heating system identifier examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - heating system identifier is_a: core field @@ -9709,7 +9691,7 @@ slots: title: extreme_unusual_properties/heavy metals examples: - value: mercury;0.09 micrograms per gram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - extreme_unusual_properties/heavy metals is_a: core field @@ -9730,7 +9712,7 @@ slots: title: extreme_unusual_properties/heavy metals method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - extreme_unusual_properties/heavy metals method is_a: core field @@ -9754,7 +9736,7 @@ slots: title: height carpet fiber mat examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - height carpet fiber mat is_a: core field @@ -9781,7 +9763,7 @@ slots: title: herbicide regimen examples: - value: atrazine;10 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - herbicide regimen is_a: core field @@ -9802,7 +9784,7 @@ slots: title: soil horizon method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil horizon method is_a: core field @@ -9827,7 +9809,7 @@ slots: title: host age examples: - value: 10 days - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host age is_a: core field @@ -9847,7 +9829,7 @@ slots: title: host body habitat examples: - value: nasopharynx - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host body habitat is_a: core field @@ -9871,7 +9853,7 @@ slots: title: host body product examples: - value: Portion of mucus [fma66938] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host body product is_a: core field @@ -9895,7 +9877,7 @@ slots: title: host body site examples: - value: gill [UBERON:0002535] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host body site is_a: core field @@ -9919,7 +9901,7 @@ slots: title: host body temperature examples: - value: 15 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host body temperature is_a: core field @@ -9939,7 +9921,7 @@ slots: title: host color examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host color is_a: core field @@ -9960,7 +9942,7 @@ slots: title: host common name examples: - value: human - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host common name is_a: core field @@ -9982,7 +9964,7 @@ slots: title: host diet examples: - value: herbivore - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host diet is_a: core field @@ -10006,7 +9988,7 @@ slots: title: host dry mass examples: - value: 500 gram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host dry mass is_a: core field @@ -10027,7 +10009,7 @@ slots: title: host family relationship examples: - value: offspring;Mussel25 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host family relationship is_a: core field @@ -10048,7 +10030,7 @@ slots: title: host genotype examples: - value: C57BL/6 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host genotype is_a: core field @@ -10069,7 +10051,7 @@ slots: title: host growth conditions examples: - value: https://academic.oup.com/icesjms/article/68/2/349/617247 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host growth conditions is_a: core field @@ -10093,7 +10075,7 @@ slots: title: host height examples: - value: 0.1 meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host height is_a: core field @@ -10114,7 +10096,7 @@ slots: title: host last meal examples: - value: corn feed;P2H - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host last meal is_a: core field @@ -10138,7 +10120,7 @@ slots: title: host length examples: - value: 1 meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host length is_a: core field @@ -10158,7 +10140,7 @@ slots: title: host life stage examples: - value: adult - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host life stage is_a: core field @@ -10181,7 +10163,7 @@ slots: title: host phenotype examples: - value: elongated [PATO:0001154] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host phenotype is_a: core field @@ -10202,7 +10184,7 @@ slots: title: host sex examples: - value: non-binary - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host sex is_a: core field @@ -10222,7 +10204,7 @@ slots: title: host shape examples: - value: round - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host shape is_a: core field @@ -10243,7 +10225,7 @@ slots: title: host subject id examples: - value: MPI123 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host subject id is_a: core field @@ -10269,7 +10251,7 @@ slots: title: host subspecific genetic lineage examples: - value: 'serovar:Newport, variety:glabrum, cultivar: Red Delicious' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host subspecific genetic lineage is_a: core field @@ -10290,7 +10272,7 @@ slots: title: host substrate examples: - value: rock - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host substrate is_a: core field @@ -10312,7 +10294,7 @@ slots: title: observed host symbionts examples: - value: flukeworms - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - observed host symbionts is_a: core field @@ -10333,7 +10315,7 @@ slots: title: host taxid examples: - value: '7955' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host taxid is_a: core field @@ -10357,7 +10339,7 @@ slots: title: host total mass examples: - value: 2500 gram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host total mass is_a: core field @@ -10380,7 +10362,7 @@ slots: title: host wet mass examples: - value: 1500 gram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - host wet mass is_a: core field @@ -10403,7 +10385,7 @@ slots: title: humidity examples: - value: 25 gram per cubic meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - humidity is_a: core field @@ -10430,7 +10412,7 @@ slots: title: humidity regimen examples: - value: 25 gram per cubic meter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - humidity regimen is_a: core field @@ -10452,7 +10434,7 @@ slots: title: indoor space examples: - value: foyer - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - indoor space is_a: core field @@ -10472,7 +10454,7 @@ slots: title: indoor surface examples: - value: wall - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - indoor surface is_a: core field @@ -10496,7 +10478,7 @@ slots: title: industrial effluent percent examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - industrial effluent percent is_a: core field @@ -10520,7 +10502,7 @@ slots: title: inorganic particles examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - inorganic particles is_a: core field @@ -10544,7 +10526,7 @@ slots: title: inside lux light examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - inside lux light is_a: core field @@ -10565,7 +10547,7 @@ slots: title: interior wall condition examples: - value: damaged - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - interior wall condition is_a: core field @@ -10586,7 +10568,7 @@ slots: title: injection water breakthrough date of specific well examples: - value: '2018-05-11' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - injection water breakthrough date of specific well is_a: core field @@ -10610,7 +10592,7 @@ slots: title: injection water fraction examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - injection water fraction is_a: core field @@ -10630,7 +10612,7 @@ slots: title: last time swept/mopped/vacuumed examples: - value: 2018-05-11:T14:30Z - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - last time swept/mopped/vacuumed is_a: core field @@ -10648,7 +10630,7 @@ slots: title: geographic location (latitude and longitude) examples: - value: 50.586825 6.408977 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - geographic location (latitude and longitude) is_a: environment field @@ -10672,7 +10654,7 @@ slots: title: light intensity examples: - value: 0.3 lux - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - light intensity is_a: core field @@ -10696,7 +10678,7 @@ slots: title: light regimen examples: - value: incandescant light;10 lux;450 nanometer - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - light regimen is_a: core field @@ -10720,7 +10702,7 @@ slots: title: light type examples: - value: desk lamp - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - light type is_a: core field @@ -10740,7 +10722,7 @@ slots: title: links to additional analysis examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - links to additional analysis is_a: core field @@ -10761,7 +10743,7 @@ slots: title: link to classification information examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - link to classification information is_a: core field @@ -10782,7 +10764,7 @@ slots: title: link to climate information examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - link to climate information is_a: core field @@ -10804,7 +10786,7 @@ slots: title: lithology examples: - value: Volcanic - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - lithology is_a: core field @@ -10824,7 +10806,7 @@ slots: title: soil_taxonomic/local classification examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil_taxonomic/local classification is_a: core field @@ -10845,7 +10827,7 @@ slots: title: soil_taxonomic/local classification method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil_taxonomic/local classification method is_a: core field @@ -10870,7 +10852,7 @@ slots: title: magnesium examples: - value: 52.8 micromole per kilogram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - magnesium is_a: core field @@ -10890,7 +10872,7 @@ slots: title: maximum occupancy examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - maximum occupancy is_a: core field @@ -10913,7 +10895,7 @@ slots: title: mean friction velocity examples: - value: 0.5 meter per second - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mean friction velocity is_a: core field @@ -10936,7 +10918,7 @@ slots: title: mean peak friction velocity examples: - value: 1 meter per second - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mean peak friction velocity is_a: core field @@ -10956,7 +10938,7 @@ slots: title: mechanical structure examples: - value: elevator - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mechanical structure is_a: core field @@ -10977,7 +10959,7 @@ slots: title: mechanical damage examples: - value: pruning;bark - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mechanical damage is_a: core field @@ -11001,7 +10983,7 @@ slots: title: methane examples: - value: 1800 parts per billion - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - methane is_a: core field @@ -11021,7 +11003,7 @@ slots: title: microbial biomass method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - microbial biomass method is_a: core field @@ -11047,7 +11029,7 @@ slots: title: microbial biomass examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - microbial biomass is_a: core field @@ -11075,7 +11057,7 @@ slots: title: mineral nutrient regimen examples: - value: potassium;15 gram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mineral nutrient regimen is_a: core field @@ -11097,7 +11079,7 @@ slots: title: miscellaneous parameter examples: - value: Bicarbonate ion concentration;2075 micromole per kilogram - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - miscellaneous parameter is_a: core field @@ -11121,7 +11103,7 @@ slots: title: n-alkanes examples: - value: n-hexadecane;100 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - n-alkanes is_a: core field @@ -11145,7 +11127,7 @@ slots: title: nitrate examples: - value: 65 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - nitrate is_a: core field @@ -11168,7 +11150,7 @@ slots: title: nitrite examples: - value: 0.5 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - nitrite is_a: core field @@ -11191,7 +11173,7 @@ slots: title: nitrogen examples: - value: 4.2 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - nitrogen is_a: core field @@ -11219,7 +11201,7 @@ slots: title: non-mineral nutrient regimen examples: - value: carbon dioxide;10 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - non-mineral nutrient regimen is_a: core field @@ -11239,7 +11221,7 @@ slots: title: nucleic acid amplification examples: - value: https://phylogenomics.me/protocols/16s-pcr-protocol/ - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - nucleic acid amplification is_a: sequencing field @@ -11259,7 +11241,7 @@ slots: title: nucleic acid extraction examples: - value: https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - nucleic acid extraction is_a: sequencing field @@ -11280,7 +11262,7 @@ slots: title: number of pets examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - number of pets is_a: core field @@ -11300,7 +11282,7 @@ slots: title: number of houseplants examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - number of houseplants is_a: core field @@ -11320,7 +11302,7 @@ slots: title: number of residents examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - number of residents is_a: core field @@ -11340,7 +11322,7 @@ slots: title: occupant density at sampling examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - occupant density at sampling is_a: core field @@ -11360,7 +11342,7 @@ slots: title: occupancy documentation examples: - value: estimate - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - occupancy documentation is_a: core field @@ -11380,7 +11362,7 @@ slots: title: occupancy at sampling examples: - value: '10' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - occupancy at sampling is_a: core field @@ -11403,7 +11385,7 @@ slots: title: organic carbon examples: - value: 1.5 microgram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - organic carbon is_a: core field @@ -11432,7 +11414,7 @@ slots: title: organism count qPCR information examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - organism count qPCR information is_a: core field @@ -11457,7 +11439,7 @@ slots: title: organic matter examples: - value: 1.75 milligram per cubic meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - organic matter is_a: core field @@ -11480,7 +11462,7 @@ slots: title: organic nitrogen examples: - value: 4 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - organic nitrogen is_a: core field @@ -11504,7 +11486,7 @@ slots: title: organic particles examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - organic particles is_a: core field @@ -11532,7 +11514,7 @@ slots: title: organism count examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - organism count is_a: core field @@ -11555,7 +11537,7 @@ slots: title: oil water contact depth examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - oil water contact depth is_a: core field @@ -11575,7 +11557,7 @@ slots: title: oxygenation status of sample examples: - value: aerobic - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - oxygenation status of sample is_a: core field @@ -11598,7 +11580,7 @@ slots: title: oxygen examples: - value: 600 parts per million - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - oxygen is_a: core field @@ -11621,7 +11603,7 @@ slots: title: particulate organic carbon examples: - value: 1.92 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - particulate organic carbon is_a: core field @@ -11644,7 +11626,7 @@ slots: title: particulate organic nitrogen examples: - value: 0.3 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - particulate organic nitrogen is_a: core field @@ -11669,7 +11651,7 @@ slots: title: particle classification examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - particle classification is_a: core field @@ -11689,7 +11671,7 @@ slots: title: pcr conditions examples: - value: initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pcr conditions is_a: sequencing field @@ -11711,7 +11693,7 @@ slots: title: pcr primers examples: - value: FWD:GTGCCAGCMGCCGCGGTAA;REV:GGACTACHVGGGTWTCTAAT - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pcr primers is_a: sequencing field @@ -11736,7 +11718,7 @@ slots: title: permeability examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - permeability is_a: core field @@ -11760,7 +11742,7 @@ slots: title: perturbation examples: - value: antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - perturbation is_a: core field @@ -11788,7 +11770,7 @@ slots: title: pesticide regimen examples: - value: pyrethrum;0.6 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pesticide regimen is_a: core field @@ -11812,7 +11794,7 @@ slots: title: petroleum hydrocarbon examples: - value: 0.05 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - petroleum hydrocarbon is_a: core field @@ -11833,7 +11815,7 @@ slots: title: pH examples: - value: '7.2' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pH is_a: core field @@ -11853,7 +11835,7 @@ slots: title: pH method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pH method is_a: core field @@ -11877,7 +11859,7 @@ slots: title: pH regimen examples: - value: 7.6;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pH regimen is_a: core field @@ -11901,7 +11883,7 @@ slots: title: phaeopigments examples: - value: 2.5 milligram per cubic meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - phaeopigments is_a: core field @@ -11925,7 +11907,7 @@ slots: title: phosphate examples: - value: 0.7 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - phosphate is_a: core field @@ -11948,7 +11930,7 @@ slots: title: phospholipid fatty acid examples: - value: 2.98 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - phospholipid fatty acid is_a: core field @@ -11972,7 +11954,7 @@ slots: title: photon flux examples: - value: 3.926 micromole photons per second per square meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - photon flux is_a: core field @@ -11996,7 +11978,7 @@ slots: title: plant growth medium examples: - value: hydroponic plant culture media [EO:0007067] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - plant growth medium is_a: core field @@ -12016,7 +11998,7 @@ slots: title: plant product examples: - value: xylem sap [PO:0025539] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - plant product is_a: core field @@ -12038,7 +12020,7 @@ slots: title: plant sex examples: - value: Hermaphroditic - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - plant sex is_a: core field @@ -12061,7 +12043,7 @@ slots: title: plant structure examples: - value: epidermis [PO:0005679] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - plant structure is_a: core field @@ -12087,7 +12069,7 @@ slots: title: pollutants examples: - value: lead;0.15 microgram per cubic meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pollutants is_a: core field @@ -12109,7 +12091,7 @@ slots: title: pooling of DNA extracts (if done) examples: - value: yes;5 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pooling of DNA extracts (if done) is_a: core field @@ -12134,7 +12116,7 @@ slots: title: porosity examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - porosity is_a: core field @@ -12158,7 +12140,7 @@ slots: title: potassium examples: - value: 463 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - potassium is_a: core field @@ -12184,7 +12166,7 @@ slots: title: pour point examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pour point is_a: core field @@ -12205,7 +12187,7 @@ slots: title: pre-treatment examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pre-treatment is_a: core field @@ -12227,7 +12209,7 @@ slots: title: presence of pets, animals, or insects examples: - value: cat;5 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - presence of pets, animals, or insects is_a: core field @@ -12251,7 +12233,7 @@ slots: title: pressure examples: - value: 50 atmosphere - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - pressure is_a: core field @@ -12271,7 +12253,7 @@ slots: title: history/previous land use method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/previous land use method is_a: core field @@ -12292,7 +12274,7 @@ slots: title: history/previous land use examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/previous land use is_a: core field @@ -12317,7 +12299,7 @@ slots: title: primary production examples: - value: 100 milligram per cubic meter per day - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - primary production is_a: core field @@ -12339,7 +12321,7 @@ slots: title: primary treatment examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - primary treatment is_a: core field @@ -12363,7 +12345,7 @@ slots: title: production rate examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - production rate is_a: core field @@ -12383,7 +12365,7 @@ slots: title: production start date examples: - value: '2018-05-11' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - production start date is_a: core field @@ -12404,7 +12386,7 @@ slots: title: profile position examples: - value: summit - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - profile position is_a: core field @@ -12424,7 +12406,7 @@ slots: title: quadrant position examples: - value: West side - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - quadrant position is_a: core field @@ -12451,7 +12433,7 @@ slots: title: radiation regimen examples: - value: gamma radiation;60 gray;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - radiation regimen is_a: core field @@ -12478,7 +12460,7 @@ slots: title: rainfall regimen examples: - value: 15 millimeter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rainfall regimen is_a: core field @@ -12501,7 +12483,7 @@ slots: title: reactor type examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - reactor type is_a: core field @@ -12526,7 +12508,7 @@ slots: title: redox potential examples: - value: 300 millivolt - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - redox potential is_a: core field @@ -12550,7 +12532,7 @@ slots: title: relative air humidity examples: - value: 80% - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - relative air humidity is_a: core field @@ -12573,7 +12555,7 @@ slots: title: outside relative humidity examples: - value: 12 per kilogram of air - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - outside relative humidity is_a: core field @@ -12593,7 +12575,7 @@ slots: title: relative sampling location examples: - value: center of car - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - relative sampling location is_a: core field @@ -12611,7 +12593,7 @@ slots: title: relationship to oxygen examples: - value: aerobe - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - relationship to oxygen is_a: nucleic acid sequence source field @@ -12631,7 +12613,7 @@ slots: title: reservoir name examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - reservoir name is_a: core field @@ -12659,7 +12641,7 @@ slots: title: resins wt% examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - resins wt% is_a: core field @@ -12683,7 +12665,7 @@ slots: title: room air exchange rate examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room air exchange rate is_a: core field @@ -12704,7 +12686,7 @@ slots: title: room architectural elements examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room architectural elements is_a: core field @@ -12725,7 +12707,7 @@ slots: title: room condition examples: - value: new - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room condition is_a: core field @@ -12745,7 +12727,7 @@ slots: title: rooms connected by a doorway examples: - value: office - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooms connected by a doorway is_a: core field @@ -12766,7 +12748,7 @@ slots: title: room count examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room count is_a: core field @@ -12789,7 +12771,7 @@ slots: title: room dimensions examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room dimensions is_a: core field @@ -12814,7 +12796,7 @@ slots: title: room door distance examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room door distance is_a: core field @@ -12836,7 +12818,7 @@ slots: title: rooms that share a door with sampling room examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooms that share a door with sampling room is_a: core field @@ -12858,7 +12840,7 @@ slots: title: rooms that are on the same hallway examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooms that are on the same hallway is_a: core field @@ -12879,7 +12861,7 @@ slots: title: room location in building examples: - value: interior room - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room location in building is_a: core field @@ -12900,7 +12882,7 @@ slots: title: room moisture damage or mold history examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room moisture damage or mold history is_a: core field @@ -12923,7 +12905,7 @@ slots: title: room net area examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room net area is_a: core field @@ -12944,7 +12926,7 @@ slots: title: room occupancy examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room occupancy is_a: core field @@ -12965,7 +12947,7 @@ slots: title: room sampling position examples: - value: south corner - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room sampling position is_a: core field @@ -12986,7 +12968,7 @@ slots: title: room type examples: - value: bathroom - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room type is_a: core field @@ -13009,7 +12991,7 @@ slots: title: room volume examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room volume is_a: core field @@ -13031,7 +13013,7 @@ slots: title: rooms that share a wall with sampling room examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooms that share a wall with sampling room is_a: core field @@ -13052,7 +13034,7 @@ slots: title: room window count examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - room window count is_a: core field @@ -13073,7 +13055,7 @@ slots: title: rooting conditions examples: - value: http://himedialabs.com/TD/PT158.pdf - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting conditions is_a: core field @@ -13097,7 +13079,7 @@ slots: title: rooting medium carbon examples: - value: sucrose - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting medium carbon is_a: core field @@ -13122,7 +13104,7 @@ slots: title: rooting medium macronutrients examples: - value: KH2PO4;170¬†milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting medium macronutrients is_a: core field @@ -13147,7 +13129,7 @@ slots: title: rooting medium micronutrients examples: - value: H3BO3;6.2¬†milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting medium micronutrients is_a: core field @@ -13168,7 +13150,7 @@ slots: title: rooting medium pH examples: - value: '7.5' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting medium pH is_a: core field @@ -13192,7 +13174,7 @@ slots: title: rooting medium regulators examples: - value: abscisic acid;0.75 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting medium regulators is_a: core field @@ -13214,7 +13196,7 @@ slots: title: rooting medium solidifier examples: - value: agar - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting medium solidifier is_a: core field @@ -13240,7 +13222,7 @@ slots: title: rooting medium organic supplements examples: - value: nicotinic acid;0.5 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - rooting medium organic supplements is_a: core field @@ -13269,7 +13251,7 @@ slots: title: salinity examples: - value: 25 practical salinity unit - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - salinity is_a: core field @@ -13289,7 +13271,7 @@ slots: title: salinity method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - salinity method is_a: core field @@ -13317,7 +13299,7 @@ slots: title: salt regimen examples: - value: NaCl;5 gram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - salt regimen is_a: core field @@ -13338,7 +13320,7 @@ slots: title: sample capture status examples: - value: farm sample - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample capture status is_a: core field @@ -13357,7 +13339,7 @@ slots: title: sample collection device examples: - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample collection device is_a: nucleic acid sequence source field @@ -13375,7 +13357,7 @@ slots: title: sample collection method examples: - value: swabbing - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample collection method is_a: nucleic acid sequence source field @@ -13398,7 +13380,7 @@ slots: title: sample collection point examples: - value: well - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample collection point is_a: core field @@ -13419,7 +13401,7 @@ slots: title: sample disease stage examples: - value: infection - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample disease stage is_a: core field @@ -13439,7 +13421,7 @@ slots: title: sampling floor examples: - value: 4th floor - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sampling floor is_a: core field @@ -13468,7 +13450,7 @@ slots: title: corrosion rate at sample location examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - corrosion rate at sample location is_a: core field @@ -13488,7 +13470,7 @@ slots: title: sample material processing examples: - value: filtering of seawater, storing samples in ethanol - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample material processing is_a: nucleic acid sequence source field @@ -13517,7 +13499,7 @@ slots: title: sample measured depth examples: - value: 1534 meter;MSL - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample measured depth is_a: core field @@ -13540,7 +13522,7 @@ slots: title: sample name examples: - value: ISDsoil1 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample name is_a: investigation field @@ -13565,7 +13547,7 @@ slots: title: preservative added to sample examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - preservative added to sample is_a: core field @@ -13587,7 +13569,7 @@ slots: title: sampling room ID or name examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sampling room ID or name is_a: core field @@ -13608,7 +13590,7 @@ slots: title: amount or size of sample collected examples: - value: 5 liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - amount or size of sample collected is_a: nucleic acid sequence source field @@ -13631,7 +13613,7 @@ slots: title: sample size sorting method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample size sorting method is_a: core field @@ -13652,7 +13634,7 @@ slots: title: sample storage duration examples: - value: P1Y6M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample storage duration is_a: core field @@ -13673,7 +13655,7 @@ slots: title: sample storage location examples: - value: Freezer no:5 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample storage location is_a: core field @@ -13697,7 +13679,7 @@ slots: title: sample storage temperature examples: - value: -80 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample storage temperature is_a: core field @@ -13719,7 +13701,7 @@ slots: title: sample subtype examples: - value: biofilm - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample subtype is_a: core field @@ -13738,7 +13720,7 @@ slots: title: Taxonomy ID of DNA sample examples: - value: Gut Metagenome [NCBI:txid749906] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - Taxonomy ID of DNA sample is_a: investigation field @@ -13762,7 +13744,7 @@ slots: title: sampling time outside examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sampling time outside is_a: core field @@ -13786,7 +13768,7 @@ slots: title: sample transport conditions examples: - value: 5 days;-20 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample transport conditions is_a: core field @@ -13812,7 +13794,7 @@ slots: title: sample true vertical depth subsea examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample true vertical depth subsea is_a: core field @@ -13838,7 +13820,7 @@ slots: title: sample type examples: - value: built environment sample [GENEPIO:0001248] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample type is_a: core field @@ -13861,7 +13843,7 @@ slots: title: sample volume or weight for DNA extraction examples: - value: 1500 milliliter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample volume or weight for DNA extraction is_a: nucleic acid sequence source field @@ -13881,7 +13863,7 @@ slots: title: sampling day weather examples: - value: foggy - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sampling day weather is_a: core field @@ -13901,7 +13883,7 @@ slots: title: sample well name examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sample well name is_a: core field @@ -13929,7 +13911,7 @@ slots: title: saturates wt% examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - saturates wt% is_a: core field @@ -13952,7 +13934,7 @@ slots: title: season examples: - value: autumn [NCIT:C94733] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - season is_a: core field @@ -13976,7 +13958,7 @@ slots: title: seasonal environment examples: - value: rainy;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - seasonal environment is_a: core field @@ -14001,7 +13983,7 @@ slots: title: mean seasonal precipitation examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mean seasonal precipitation is_a: core field @@ -14024,7 +14006,7 @@ slots: title: mean seasonal temperature examples: - value: 18 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - mean seasonal temperature is_a: core field @@ -14044,7 +14026,7 @@ slots: title: seasonal use examples: - value: Winter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - seasonal use is_a: core field @@ -14065,7 +14047,7 @@ slots: title: secondary treatment examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - secondary treatment is_a: core field @@ -14086,7 +14068,7 @@ slots: title: sediment type examples: - value: biogenous - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sediment type is_a: core field @@ -14104,7 +14086,7 @@ slots: title: sequencing method examples: - value: 454 Genome Sequencer FLX [OBI:0000702] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sequencing method is_a: sequencing field @@ -14125,7 +14107,7 @@ slots: title: sequence quality check examples: - value: none - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sequence quality check is_a: sequencing field @@ -14146,7 +14128,7 @@ slots: title: sewage type examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sewage type is_a: core field @@ -14167,7 +14149,7 @@ slots: title: shading device signs of water/mold examples: - value: no presence of mold visible - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - shading device signs of water/mold is_a: core field @@ -14188,7 +14170,7 @@ slots: title: shading device condition examples: - value: new - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - shading device condition is_a: core field @@ -14208,7 +14190,7 @@ slots: title: shading device location examples: - value: exterior - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - shading device location is_a: core field @@ -14229,7 +14211,7 @@ slots: title: shading device material examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - shading device material is_a: core field @@ -14250,7 +14232,7 @@ slots: title: shading device type examples: - value: slatted aluminum awning - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - shading device type is_a: core field @@ -14271,7 +14253,7 @@ slots: title: composite design/sieving examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - composite design/sieving is_a: core field @@ -14295,7 +14277,7 @@ slots: title: silicate examples: - value: 0.05 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - silicate is_a: core field @@ -14312,7 +14294,7 @@ slots: title: size fraction selected examples: - value: 0-0.22 micrometer - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - size fraction selected is_a: nucleic acid sequence source field @@ -14337,7 +14319,7 @@ slots: title: size-fraction lower threshold examples: - value: 0.2 micrometer - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - size-fraction lower threshold is_a: core field @@ -14361,7 +14343,7 @@ slots: title: size-fraction upper threshold examples: - value: 20 micrometer - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - size-fraction upper threshold is_a: core field @@ -14387,7 +14369,7 @@ slots: title: slope aspect examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - slope aspect is_a: core field @@ -14412,7 +14394,7 @@ slots: title: slope gradient examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - slope gradient is_a: core field @@ -14435,7 +14417,7 @@ slots: title: sludge retention time examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sludge retention time is_a: core field @@ -14458,7 +14440,7 @@ slots: title: sodium examples: - value: 10.5 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sodium is_a: core field @@ -14480,7 +14462,7 @@ slots: title: soil horizon examples: - value: A horizon - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil horizon is_a: core field @@ -14503,7 +14485,7 @@ slots: title: soil texture measurement examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil texture measurement is_a: core field @@ -14523,7 +14505,7 @@ slots: title: soil texture method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil texture method is_a: core field @@ -14546,7 +14528,7 @@ slots: title: soil type examples: - value: plinthosol [ENVO:00002250] - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil type is_a: core field @@ -14568,7 +14550,7 @@ slots: title: soil type method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soil type method is_a: core field @@ -14594,7 +14576,7 @@ slots: title: solar irradiance examples: - value: 1.36 kilowatts per square meter per day - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - solar irradiance is_a: core field @@ -14618,7 +14600,7 @@ slots: title: soluble inorganic material examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soluble inorganic material is_a: core field @@ -14643,7 +14625,7 @@ slots: title: soluble organic material examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soluble organic material is_a: core field @@ -14667,7 +14649,7 @@ slots: title: soluble reactive phosphorus examples: - value: 0.1 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - soluble reactive phosphorus is_a: core field @@ -14696,7 +14678,7 @@ slots: title: source material identifiers examples: - value: MPI012345 - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - source material identifiers is_a: nucleic acid sequence source field @@ -14717,7 +14699,7 @@ slots: title: space typical state examples: - value: typically occupied - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - space typical state is_a: core field @@ -14739,7 +14721,7 @@ slots: title: specifications examples: - value: construction - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - specifications is_a: core field @@ -14764,7 +14746,7 @@ slots: title: specific humidity examples: - value: 15 per kilogram of air - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - specific humidity is_a: core field @@ -14785,7 +14767,7 @@ slots: title: source rock depositional environment examples: - value: Marine - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - source rock depositional environment is_a: core field @@ -14806,7 +14788,7 @@ slots: title: source rock geological age examples: - value: Silurian - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - source rock geological age is_a: core field @@ -14830,7 +14812,7 @@ slots: title: source rock kerogen type examples: - value: Type IV - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - source rock kerogen type is_a: core field @@ -14851,7 +14833,7 @@ slots: title: source rock lithology examples: - value: Coal - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - source rock lithology is_a: core field @@ -14874,7 +14856,7 @@ slots: title: standing water regimen examples: - value: standing water;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - standing water regimen is_a: core field @@ -14896,7 +14878,7 @@ slots: title: storage conditions examples: - value: -20 degree Celsius freezer;P2Y10D - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - storage conditions is_a: core field @@ -14918,7 +14900,7 @@ slots: title: substructure type examples: - value: basement - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - substructure type is_a: core field @@ -14941,7 +14923,7 @@ slots: title: sulfate examples: - value: 5 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sulfate is_a: core field @@ -14964,7 +14946,7 @@ slots: title: sulfate in formation water examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sulfate in formation water is_a: core field @@ -14987,7 +14969,7 @@ slots: title: sulfide examples: - value: 2 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - sulfide is_a: core field @@ -15007,7 +14989,7 @@ slots: title: surface-air contaminant examples: - value: radon - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - surface-air contaminant is_a: core field @@ -15030,7 +15012,7 @@ slots: title: surface humidity examples: - value: 10% - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - surface humidity is_a: core field @@ -15050,7 +15032,7 @@ slots: title: surface material examples: - value: wood - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - surface material is_a: core field @@ -15073,7 +15055,7 @@ slots: title: surface moisture examples: - value: 0.01 gram per square meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - surface moisture is_a: core field @@ -15093,7 +15075,7 @@ slots: title: surface moisture pH examples: - value: '7' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - surface moisture pH is_a: core field @@ -15116,7 +15098,7 @@ slots: title: surface temperature examples: - value: 15 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - surface temperature is_a: core field @@ -15139,7 +15121,7 @@ slots: title: suspended particulate matter examples: - value: 0.5 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - suspended particulate matter is_a: core field @@ -15164,7 +15146,7 @@ slots: title: suspended solids examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - suspended solids is_a: core field @@ -15191,7 +15173,7 @@ slots: title: total acid number examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total acid number is_a: core field @@ -15208,7 +15190,7 @@ slots: title: target gene examples: - value: 16S rRNA, 18S rRNA, nif, amoA, rpo - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - target gene is_a: sequencing field @@ -15227,7 +15209,7 @@ slots: title: target subfragment examples: - value: V6, V9, ITS - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - target subfragment is_a: sequencing field @@ -15248,7 +15230,7 @@ slots: title: temperature examples: - value: 25 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - temperature is_a: environment field @@ -15271,7 +15253,7 @@ slots: title: temperature outside house examples: - value: 5 degree Celsius - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - temperature outside house is_a: core field @@ -15292,7 +15274,7 @@ slots: title: tertiary treatment examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - tertiary treatment is_a: core field @@ -15313,7 +15295,7 @@ slots: title: tidal stage examples: - value: high tide - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - tidal stage is_a: core field @@ -15333,7 +15315,7 @@ slots: title: history/tillage examples: - value: chisel - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - history/tillage is_a: core field @@ -15353,7 +15335,7 @@ slots: title: tissue culture growth media examples: - value: https://link.springer.com/content/pdf/10.1007/BF02796489.pdf - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - tissue culture growth media is_a: core field @@ -15377,7 +15359,7 @@ slots: title: toluene examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - toluene is_a: core field @@ -15400,7 +15382,7 @@ slots: title: total carbon examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total carbon is_a: core field @@ -15423,7 +15405,7 @@ slots: title: total depth of water column examples: - value: 500 meter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total depth of water column is_a: core field @@ -15447,7 +15429,7 @@ slots: title: total dissolved nitrogen examples: - value: 40 microgram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total dissolved nitrogen is_a: core field @@ -15470,7 +15452,7 @@ slots: title: total inorganic nitrogen examples: - value: 40 microgram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total inorganic nitrogen is_a: core field @@ -15493,7 +15475,7 @@ slots: title: total iron examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total iron is_a: core field @@ -15518,7 +15500,7 @@ slots: title: total nitrogen concentration examples: - value: 50 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total nitrogen concentration is_a: core field @@ -15538,7 +15520,7 @@ slots: title: total nitrogen content method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total nitrogen content method is_a: core field @@ -15562,7 +15544,7 @@ slots: title: total nitrogen content examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total nitrogen content is_a: core field @@ -15582,7 +15564,7 @@ slots: title: total organic carbon method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total organic carbon method is_a: core field @@ -15607,7 +15589,7 @@ slots: title: total organic carbon examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total organic carbon is_a: core field @@ -15630,7 +15612,7 @@ slots: title: total particulate carbon examples: - value: 35 micromole per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total particulate carbon is_a: core field @@ -15654,7 +15636,7 @@ slots: title: total phosphorus examples: - value: 0.03 milligram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total phosphorus is_a: core field @@ -15677,7 +15659,7 @@ slots: title: total phosphate examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total phosphate is_a: core field @@ -15700,7 +15682,7 @@ slots: title: total sulfur examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - total sulfur is_a: core field @@ -15720,7 +15702,7 @@ slots: title: train line examples: - value: red - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - train line is_a: core field @@ -15740,7 +15722,7 @@ slots: title: train station collection location examples: - value: forest hills - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - train station collection location is_a: core field @@ -15760,7 +15742,7 @@ slots: title: train stop collection location examples: - value: end - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - train stop collection location is_a: core field @@ -15784,7 +15766,7 @@ slots: title: turbidity examples: - value: 0.3 nephelometric turbidity units - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - turbidity is_a: core field @@ -15808,7 +15790,7 @@ slots: title: depth (TVDSS) of hydrocarbon resource pressure examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - depth (TVDSS) of hydrocarbon resource pressure is_a: core field @@ -15832,7 +15814,7 @@ slots: title: depth (TVDSS) of hydrocarbon resource temperature examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - depth (TVDSS) of hydrocarbon resource temperature is_a: core field @@ -15852,7 +15834,7 @@ slots: title: typical occupant density examples: - value: '25' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - typical occupant density is_a: core field @@ -15875,7 +15857,7 @@ slots: title: ventilation rate examples: - value: 750 cubic meter per minute - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ventilation rate is_a: core field @@ -15895,7 +15877,7 @@ slots: title: ventilation type examples: - value: Operable windows - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - ventilation type is_a: core field @@ -15919,7 +15901,7 @@ slots: title: volatile fatty acids examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - volatile fatty acids is_a: core field @@ -15942,7 +15924,7 @@ slots: title: vfa in formation water examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - vfa in formation water is_a: core field @@ -15962,7 +15944,7 @@ slots: title: visual media examples: - value: 3D scans - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - visual media is_a: core field @@ -15986,7 +15968,7 @@ slots: title: viscosity examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - viscosity is_a: core field @@ -16012,7 +15994,7 @@ slots: title: volatile organic compounds examples: - value: formaldehyde;500 nanogram per liter - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - volatile organic compounds is_a: core field @@ -16036,7 +16018,7 @@ slots: title: wall area examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall area is_a: core field @@ -16057,7 +16039,7 @@ slots: title: wall construction type examples: - value: fire resistive - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall construction type is_a: core field @@ -16077,7 +16059,7 @@ slots: title: wall finish material examples: - value: wood - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall finish material is_a: core field @@ -16100,7 +16082,7 @@ slots: title: wall height examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall height is_a: core field @@ -16120,7 +16102,7 @@ slots: title: wall location examples: - value: north - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall location is_a: core field @@ -16140,7 +16122,7 @@ slots: title: wall surface treatment examples: - value: paneling - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall surface treatment is_a: core field @@ -16160,7 +16142,7 @@ slots: title: wall texture examples: - value: popcorn - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall texture is_a: core field @@ -16185,7 +16167,7 @@ slots: title: wall thermal mass examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall thermal mass is_a: core field @@ -16205,7 +16187,7 @@ slots: title: wall signs of water/mold examples: - value: no presence of mold visible - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wall signs of water/mold is_a: core field @@ -16227,7 +16209,7 @@ slots: title: wastewater type examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wastewater type is_a: core field @@ -16248,7 +16230,7 @@ slots: title: water content method examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water content method is_a: core field @@ -16272,7 +16254,7 @@ slots: title: water content examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water content is_a: core field @@ -16295,7 +16277,7 @@ slots: title: water current examples: - value: 10 cubic meter per second - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water current is_a: core field @@ -16319,7 +16301,7 @@ slots: title: water cut examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water cut is_a: core field @@ -16342,7 +16324,7 @@ slots: title: water feature size examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water feature size is_a: core field @@ -16362,7 +16344,7 @@ slots: title: water feature type examples: - value: stream - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water feature type is_a: core field @@ -16385,7 +16367,7 @@ slots: title: water production rate examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water production rate is_a: core field @@ -16411,7 +16393,7 @@ slots: title: water temperature regimen examples: - value: 15 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - water temperature regimen is_a: core field @@ -16438,7 +16420,7 @@ slots: title: watering regimen examples: - value: 1 liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - watering regimen is_a: core field @@ -16459,7 +16441,7 @@ slots: title: weekday examples: - value: Sunday - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - weekday is_a: core field @@ -16482,7 +16464,7 @@ slots: title: well identification number examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - well identification number is_a: core field @@ -16503,7 +16485,7 @@ slots: title: wind direction examples: - value: Northwest - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wind direction is_a: core field @@ -16527,7 +16509,7 @@ slots: title: wind speed examples: - value: 21 kilometer per hour - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - wind speed is_a: core field @@ -16547,7 +16529,7 @@ slots: title: window condition examples: - value: rupture - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window condition is_a: core field @@ -16567,7 +16549,7 @@ slots: title: window covering examples: - value: curtains - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window covering is_a: core field @@ -16587,7 +16569,7 @@ slots: title: window horizontal position examples: - value: middle - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window horizontal position is_a: core field @@ -16607,7 +16589,7 @@ slots: title: window location examples: - value: west - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window location is_a: core field @@ -16627,7 +16609,7 @@ slots: title: window material examples: - value: wood - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window material is_a: core field @@ -16647,7 +16629,7 @@ slots: title: window open frequency examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window open frequency is_a: core field @@ -16670,7 +16652,7 @@ slots: title: window area/size examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window area/size is_a: core field @@ -16692,7 +16674,7 @@ slots: title: window status examples: - value: open - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window status is_a: core field @@ -16713,7 +16695,7 @@ slots: title: window type examples: - value: fixed window - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window type is_a: core field @@ -16733,7 +16715,7 @@ slots: title: window vertical position examples: - value: middle - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window vertical position is_a: core field @@ -16753,7 +16735,7 @@ slots: title: window signs of water/mold examples: - value: no presence of mold visible - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - window signs of water/mold is_a: core field @@ -16777,51 +16759,51 @@ slots: title: xylene examples: - value: '' - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml aliases: - xylene is_a: core field slot_uri: MIXS:0000156 multivalued: false range: QuantityValue - has numeric value: - name: has numeric value - from_schema: https://microbiomedata/schema/mixs + has raw value: + name: has raw value + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + string_serialization: '{has numeric value} {has unit}' owner: QuantityValue - range: double - core field: - name: core field - description: basic fields - from_schema: https://microbiomedata/schema/mixs + investigation field: + name: investigation field + description: field describing aspect of the investigation/study to which the sample + belongs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true + has unit: + name: has unit + description: Example "m" + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + owner: QuantityValue sequencing field: name: sequencing field - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + abstract: true + core field: + name: core field + description: basic fields + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true + has numeric value: + name: has numeric value + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + owner: QuantityValue + range: double environment field: name: environment field description: field describing environmental aspect of a sample - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true - has raw value: - name: has raw value - from_schema: https://microbiomedata/schema/mixs - string_serialization: '{has numeric value} {has unit}' - owner: QuantityValue - has unit: - name: has unit - description: Example "m" - from_schema: https://microbiomedata/schema/mixs - owner: QuantityValue nucleic acid sequence source field: name: nucleic acid sequence source field - from_schema: https://microbiomedata/schema/mixs - abstract: true - investigation field: - name: investigation field - description: field describing aspect of the investigation/study to which the sample - belongs - from_schema: https://microbiomedata/schema/mixs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true has_part: name: has_part diff --git a/project/owl/nmdc.owl.ttl b/project/owl/nmdc.owl.ttl index 8ea59a3f5d..8d48369505 100644 --- a/project/owl/nmdc.owl.ttl +++ b/project/owl/nmdc.owl.ttl @@ -1,25 +1,21 @@ @prefix EFO: . @prefix IAO: . -@prefix MIXS: . @prefix NCIT: . @prefix OBI: . -@prefix biolink: . @prefix dcterms: . +@prefix jgi: . @prefix linkml: . -@prefix mgnify: . @prefix nmdc: . +@prefix nmdc_yaml: . @prefix owl: . @prefix pav: . @prefix prov: . -@prefix qud: . @prefix rdf: . @prefix rdfs: . -@prefix schema: . @prefix skos: . -@prefix wgs84: . @prefix xsd: . - a owl:Ontology ; +nmdc_yaml:nmdc a owl:Ontology ; rdfs:label "NMDC" ; IAO:0000700 nmdc:Activity, nmdc:Agent, @@ -51,11 +47,11 @@ "removed/commented out the confusing 'identifier' slot", "resuming use of part_of to link Biosamples to Studies. eg releasing sample_link from that role", "slots requested for Bioscales, but already available for Biosample : tot_phosp, tot_carb, tot_nitro_content, pH" ; - linkml:generation_date "2023-03-02T23:48:23" ; + linkml:generation_date "2023-03-05T13:56:25" ; linkml:metamodel_version "1.7.0" ; linkml:source_file "nmdc.yaml" ; - linkml:source_file_date "2023-03-02T23:46:44" ; - linkml:source_file_size 76267 . + linkml:source_file_date "2023-03-05T13:53:21" ; + linkml:source_file_size 76378 . linkml:SubsetDefinition a owl:Class ; rdfs:label "subset_definition" . @@ -105,12 +101,12 @@ nmdc:MetatranscriptomeAnnotationActivity a owl:Class, linkml:ClassDefinition ; rdfs:label "MetatranscriptomeAnnotationActivity" ; rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom linkml:Uriorcurie ; - owl:onProperty nmdc:gold_analysis_project_identifiers ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Uriorcurie ; + owl:onProperty nmdc:gold_analysis_project_identifiers ], [ a owl:Restriction ; owl:onClass linkml:String ; owl:onProperty nmdc:id ; @@ -123,119 +119,119 @@ nmdc:MetatranscriptomeAssembly a owl:Class, rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaffolds ], + owl:onProperty nmdc:scaf_pct_gt50k ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_l50 ], + owl:onProperty nmdc:scaf_logsum ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_powsum ], + owl:onProperty nmdc:ctg_n90 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_n90 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:insdc_assembly_identifiers ], + owl:onProperty nmdc:scaf_max ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:gc_avg ], + owl:onProperty nmdc:scaf_l90 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:contigs ], + owl:onProperty nmdc:scaf_n90 ], + [ a owl:Restriction ; + owl:onClass linkml:String ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:contig_bp ], + owl:onProperty nmdc:scaf_l50 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:num_input_reads ], + owl:onProperty nmdc:scaffolds ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_logsum ], + owl:onProperty nmdc:num_aligned_reads ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:asm_score ], + owl:onProperty nmdc:scaf_bp ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_l90 ], + owl:onProperty nmdc:ctg_l50 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:gc_std ], + owl:onProperty nmdc:gc_avg ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:gap_pct ], + owl:onProperty nmdc:scaf_powsum ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_n90 ], + owl:onProperty nmdc:contigs ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_l90 ], + owl:onProperty nmdc:gap_pct ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_max ], + owl:onProperty nmdc:scaf_n50 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_powsum ], + owl:onProperty nmdc:gc_std ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_n_gt50k ], + owl:onProperty nmdc:ctg_n50 ], [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], + owl:onProperty nmdc:insdc_assembly_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_logsum ], + owl:onProperty nmdc:ctg_max ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:num_aligned_reads ], + owl:onProperty nmdc:scaf_l_gt50k ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_n50 ], + owl:onProperty nmdc:scaf_n_gt50k ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_bp ], + owl:onProperty nmdc:contig_bp ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_n50 ], + owl:onProperty nmdc:num_input_reads ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_l_gt50k ], + owl:onProperty nmdc:ctg_logsum ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_pct_gt50k ], + owl:onProperty nmdc:ctg_l90 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_l50 ], + owl:onProperty nmdc:ctg_powsum ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_max ], + owl:onProperty nmdc:asm_score ], nmdc:WorkflowExecutionActivity . nmdc:OrthologyGroup a owl:Class, @@ -244,7 +240,7 @@ nmdc:OrthologyGroup a owl:Class, rdfs:subClassOf nmdc:FunctionalAnnotationTerm ; skos:definition "A set of genes or gene products in which all members are orthologous" ; skos:editorialNote "KEGG.ORTHOLOGY prefix is used for KO numbers" ; - skos:exactMatch biolink:GeneFamily . + skos:exactMatch . nmdc:Pathway a owl:Class, linkml:ClassDefinition ; @@ -257,7 +253,7 @@ nmdc:Pathway a owl:Class, "metabolic pathway", "signaling pathway" ; skos:definition "A pathway is a sequence of steps/reactions carried out by an organism or community of organisms" ; - skos:exactMatch biolink:Pathway . + skos:exactMatch . nmdc:Person a owl:Class, linkml:ClassDefinition ; @@ -412,17 +408,17 @@ nmdc:soil_annual_season_temp a owl:ObjectProperty, rdfs:label "soil_annual_season_temp" ; rdfs:range linkml:String . -MIXS:has_numeric_value a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "has numeric value" ; rdfs:range linkml:Double . -MIXS:has_raw_value a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "has raw value" ; rdfs:range linkml:String . -MIXS:has_unit a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "has unit" ; rdfs:range linkml:String ; @@ -450,21 +446,21 @@ nmdc:ProteinQuantification a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; owl:onProperty nmdc:peptide_sequence_count ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:GeneProduct ; - owl:onProperty nmdc:best_protein ], [ a owl:Restriction ; owl:allValuesFrom nmdc:GeneProduct ; owl:onProperty nmdc:all_proteins ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:protein_spectral_count ], + owl:onProperty nmdc:protein_sum_masic_abundance ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:protein_sum_masic_abundance ] ; + owl:onProperty nmdc:protein_spectral_count ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:GeneProduct ; + owl:onProperty nmdc:best_protein ] ; skos:definition "This is used to link a metaproteomics analysis workflow to a specific protein" . nmdc:Reaction a owl:Class, @@ -473,40 +469,40 @@ nmdc:Reaction a owl:Class, rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Boolean ; - owl:onProperty nmdc:is_balanced ], + owl:onProperty nmdc:is_fully_characterized ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:ReactionParticipant ; - owl:onProperty nmdc:right_participants ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Boolean ; + owl:onProperty nmdc:is_stereo ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Boolean ; owl:onProperty nmdc:is_diastereoselective ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Boolean ; + owl:onProperty nmdc:is_balanced ], [ a owl:Restriction ; owl:allValuesFrom nmdc:ReactionParticipant ; owl:onProperty nmdc:left_participants ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:direction ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Boolean ; - owl:onProperty nmdc:is_stereo ], + owl:allValuesFrom nmdc:ReactionParticipant ; + owl:onProperty nmdc:right_participants ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Boolean ; - owl:onProperty nmdc:is_fully_characterized ], + owl:onClass linkml:String ; + owl:onProperty nmdc:smarts_string ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:smarts_string ], + owl:onProperty nmdc:direction ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Boolean ; owl:onProperty nmdc:is_transport ], nmdc:FunctionalAnnotationTerm ; skos:definition "An individual biochemical transformation carried out by a functional unit of an organism, in which a collection of substrates are transformed into a collection of products. Can also represent transporters" ; - skos:exactMatch biolink:MolecularActivity . + skos:exactMatch . nmdc:abstract a owl:ObjectProperty, linkml:SlotDefinition ; @@ -1238,8 +1234,8 @@ nmdc:has_unit a owl:ObjectProperty, rdfs:range nmdc:Unit ; skos:altLabel "scale" ; skos:definition "Links a QuantityValue to a unit" ; - skos:exactMatch qud:unit, - schema:unitCode . + skos:exactMatch , + . nmdc:highest_similarity_score a owl:ObjectProperty, linkml:SlotDefinition ; @@ -2284,30 +2280,30 @@ OBI:0000103 a owl:Class, nmdc:CreditEnum ; rdfs:label "Principal Investigator" . -schema:email a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "email" ; rdfs:range linkml:String ; skos:definition "An email address for an entity such as a person. This should be the primary email address used." ; - skos:exactMatch schema:email . + skos:exactMatch . -wgs84:lat a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "latitude" ; rdfs:domain nmdc:GeolocationValue ; rdfs:range nmdc:DecimalDegree ; skos:definition "latitude" ; - skos:exactMatch schema:latitude, - wgs84:lat . + skos:exactMatch , + . -wgs84:long a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "longitude" ; rdfs:domain nmdc:GeolocationValue ; rdfs:range nmdc:DecimalDegree ; skos:definition "longitude" ; - skos:exactMatch schema:longitude, - wgs84:long . + skos:exactMatch , + . prov:agent a owl:ObjectProperty, linkml:SlotDefinition ; @@ -2365,9502 +2361,9502 @@ prov:qualifiedAssociation a owl:ObjectProperty, rdfs:label "SFA" ; dcterms:title "Department of Energy Office of Science Biological and Environmental Research Program Laboratory Science Focus Areas" . -MIXS:0000001 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_size" ; dcterms:title "amount or size of sample collected" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:nucleic_acid_sequence_source_field ; + rdfs:subPropertyOf ; skos:altLabel "amount or size of sample collected" ; skos:definition "The total amount or size (volume (ml), mass (g) or area (m2) ) of sample collected." ; - skos:exactMatch MIXS:0000001 ; + skos:exactMatch ; linkml:examples "Example(value='5 liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:preferred_unit "millliter, gram, milligram, liter" . -MIXS:0000002 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_collec_device" ; dcterms:title "sample collection device" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:nucleic_acid_sequence_source_field ; + rdfs:subPropertyOf ; skos:altLabel "sample collection device" ; skos:definition "The device used to collect an environmental sample. This field accepts terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO). This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094)." ; - skos:exactMatch MIXS:0000002 ; + skos:exactMatch ; linkml:examples "Example(value='swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]', description=None)" ; nmdc:expected_value "device name" . -MIXS:0000008 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "experimental_factor" ; dcterms:title "experimental factor" ; rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf MIXS:investigation_field ; + rdfs:subPropertyOf ; skos:altLabel "experimental factor" ; skos:definition "Experimental factors are essentially the variable aspects of an experiment design which can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). For a browser of EFO (v 2.95) terms, please see http://purl.bioontology.org/ontology/EFO; for a browser of OBI (v 2018-02-12) terms please see http://purl.bioontology.org/ontology/OBI" ; - skos:exactMatch MIXS:0000008 ; + skos:exactMatch ; linkml:examples "Example(value='time series design [EFO:EFO_0001779]', description=None)" ; nmdc:expected_value "text or EFO and/or OBI" . -MIXS:0000009 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "lat_lon" ; dcterms:title "geographic location (latitude and longitude)" ; rdfs:range nmdc:GeolocationValue ; - rdfs:subPropertyOf MIXS:environment_field ; + rdfs:subPropertyOf ; skos:altLabel "geographic location (latitude and longitude)" ; skos:definition "The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system" ; - skos:exactMatch MIXS:0000009 ; + skos:exactMatch ; linkml:examples "Example(value='50.586825 6.408977', description=None)" ; nmdc:expected_value "decimal degrees, limit to 8 decimal points" . -MIXS:0000010 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "geo_loc_name" ; dcterms:title "geographic location (country and/or sea,region)" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:environment_field ; + rdfs:subPropertyOf ; skos:altLabel "geographic location (country and/or sea,region)" ; skos:definition "The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)" ; - skos:exactMatch MIXS:0000010 ; + skos:exactMatch ; linkml:examples "Example(value='USA: Maryland, Bethesda', description=None)" ; nmdc:expected_value "country or sea name (INSDC or GAZ): region(GAZ), specific location name" . -MIXS:0000011 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "collection_date" ; dcterms:title "collection date" ; rdfs:range nmdc:TimestampValue ; - rdfs:subPropertyOf MIXS:environment_field ; + rdfs:subPropertyOf ; skos:altLabel "collection date" ; skos:definition "The time of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant" ; - skos:exactMatch MIXS:0000011 ; + skos:exactMatch ; linkml:examples "Example(value='2018-05-11T10:00:00+01:00; 2018-05-11', description=None)" ; nmdc:expected_value "date and time" . -MIXS:0000012 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "env_broad_scale" ; dcterms:title "broad-scale environmental context" ; rdfs:range nmdc:ControlledIdentifiedTermValue ; - rdfs:subPropertyOf MIXS:environment_field ; + rdfs:subPropertyOf ; skos:altLabel "broad-scale environmental context" ; skos:definition "Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO’s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS" ; - skos:exactMatch MIXS:0000012 ; + skos:exactMatch ; linkml:examples "Example(value='oceanic epipelagic zone biome [ENVO:01000033] for annotating a water sample from the photic zone in middle of the Atlantic Ocean', description=None)" ; nmdc:expected_value "The major environment type(s) where the sample was collected. Recommend subclasses of biome [ENVO:00000428]. Multiple terms can be separated by one or more pipes." . -MIXS:0000013 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "env_local_scale" ; dcterms:title "local environmental context" ; rdfs:range nmdc:ControlledIdentifiedTermValue ; - rdfs:subPropertyOf MIXS:environment_field ; + rdfs:subPropertyOf ; skos:altLabel "local environmental context" ; skos:definition "Report the entity or entities which are in the sample or specimen’s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS." ; - skos:exactMatch MIXS:0000013 ; + skos:exactMatch ; linkml:examples "Example(value='litter layer [ENVO:01000338]; Annotating a pooled sample taken from various vegetation layers in a forest consider: canopy [ENVO:00000047]|herb and fern layer [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub layer [ENVO:01000336].', description=None)" ; nmdc:expected_value "Environmental entities having causal influences upon the entity at time of sampling." . -MIXS:0000014 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "env_medium" ; dcterms:title "environmental medium" ; rdfs:range nmdc:ControlledIdentifiedTermValue ; - rdfs:subPropertyOf MIXS:environment_field ; + rdfs:subPropertyOf ; skos:altLabel "environmental medium" ; skos:definition "Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top)." ; - skos:exactMatch MIXS:0000014 ; + skos:exactMatch ; linkml:examples "Example(value='soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating a duck on a pond consider: pond water [ENVO:00002228]|air [ENVO_00002005]', description=None)" ; nmdc:expected_value "The material displaced by the entity at time of sampling. Recommend subclasses of environmental material [ENVO:00010483]." . -MIXS:0000015 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "rel_to_oxygen" ; dcterms:title "relationship to oxygen" ; - rdfs:range MIXS:RelToOxygenEnum ; - rdfs:subPropertyOf MIXS:nucleic_acid_sequence_source_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "relationship to oxygen" ; skos:definition "Is this organism an aerobe, anaerobe? Please note that aerobic and anaerobic are valid descriptors for microbial environments" ; - skos:exactMatch MIXS:0000015 ; + skos:exactMatch ; linkml:examples "Example(value='aerobe', description=None)" ; nmdc:expected_value "enumeration" . -MIXS:0000016 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_mat_process" ; dcterms:title "sample material processing" ; rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf MIXS:nucleic_acid_sequence_source_field ; + rdfs:subPropertyOf ; skos:altLabel "sample material processing" ; skos:definition "A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed." ; - skos:exactMatch MIXS:0000016 ; + skos:exactMatch ; linkml:examples "Example(value='filtering of seawater, storing samples in ethanol', description=None)" ; nmdc:expected_value "text" . -MIXS:0000017 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "size_frac" ; dcterms:title "size fraction selected" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:nucleic_acid_sequence_source_field ; + rdfs:subPropertyOf ; skos:altLabel "size fraction selected" ; skos:definition "Filtering pore size used in sample preparation" ; - skos:exactMatch MIXS:0000017 ; + skos:exactMatch ; linkml:examples "Example(value='0-0.22 micrometer', description=None)" ; nmdc:expected_value "filter size value range" . -MIXS:0000018 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "depth" ; dcterms:title "depth" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:environment_field ; + rdfs:subPropertyOf ; skos:altLabel "depth" ; skos:definition "The vertical distance below local surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples." ; - skos:exactMatch MIXS:0000018 ; + skos:exactMatch ; linkml:examples "Example(value='10 meter', description=None)" ; nmdc:expected_value "measurement value" . -MIXS:0000026 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "source_mat_id" ; dcterms:title "source material identifiers" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:nucleic_acid_sequence_source_field ; + rdfs:subPropertyOf ; skos:altLabel "source material identifiers" ; skos:definition "A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen voucher and sampled tissue with the same identifier. However, the /culture_collection qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id would refer to an identifier from some derived culture from which the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2)." ; - skos:exactMatch MIXS:0000026 ; + skos:exactMatch ; linkml:examples "Example(value='MPI012345', description=None)" ; nmdc:expected_value "for cultures of microorganisms: identifiers for two culture collections; for other material a unique arbitrary identifer" . -MIXS:0000028 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "biotic_relationship" ; dcterms:title "observed biotic relationship" ; - rdfs:range MIXS:BioticRelationshipEnum ; - rdfs:subPropertyOf MIXS:nucleic_acid_sequence_source_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "observed biotic relationship" ; skos:definition "Description of relationship(s) between the subject organism and other organism(s) it is associated with. E.g., parasite on species X; mutualist with species Y. The target organism is the subject of the relationship, and the other organism(s) is the object" ; - skos:exactMatch MIXS:0000028 ; + skos:exactMatch ; linkml:examples "Example(value='free living', description=None)" ; nmdc:expected_value "enumeration" . -MIXS:0000093 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "elev" ; dcterms:title "elevation" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:environment_field ; + rdfs:subPropertyOf ; skos:altLabel "elevation" ; skos:definition "Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit." ; - skos:exactMatch MIXS:0000093 ; + skos:exactMatch ; linkml:examples "Example(value='100 meter', description=None)" ; nmdc:expected_value "measurement value" . -MIXS:0000094 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "alt" ; dcterms:title "altitude" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:environment_field ; + rdfs:subPropertyOf ; skos:altLabel "altitude" ; skos:definition "Altitude is a term used to identify heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. In this context, the altitude measurement is the vertical distance between the earth's surface above sea level and the sampled position in the air" ; - skos:exactMatch MIXS:0000094 ; + skos:exactMatch ; linkml:examples "Example(value='100 meter', description=None)" ; nmdc:expected_value "measurement value" . -MIXS:0000096 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "barometric_press" ; dcterms:title "barometric pressure" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "barometric pressure" ; skos:definition "Force per unit area exerted against a surface by the weight of air above that surface" ; - skos:exactMatch MIXS:0000096 ; + skos:exactMatch ; linkml:examples "Example(value='5 millibar', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "millibar" . -MIXS:0000097 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "carb_dioxide" ; dcterms:title "carbon dioxide" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "carbon dioxide" ; skos:definition "Carbon dioxide (gas) amount or concentration at the time of sampling" ; - skos:exactMatch MIXS:0000097 ; + skos:exactMatch ; linkml:examples "Example(value='410 parts per million', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter, parts per million" . -MIXS:0000098 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "carb_monoxide" ; dcterms:title "carbon monoxide" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "carbon monoxide" ; skos:definition "Carbon monoxide (gas) amount or concentration at the time of sampling" ; - skos:exactMatch MIXS:0000098 ; + skos:exactMatch ; linkml:examples "Example(value='0.1 parts per million', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter, parts per million" . -MIXS:0000099 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "org_count_qpcr_info" ; dcterms:title "organism count qPCR information" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "organism count qPCR information" ; skos:definition "If qpcr was used for the cell count, the target gene name, the primer sequence and the cycling conditions should also be provided. (Example: 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; 30 cycles)" ; - skos:exactMatch MIXS:0000099 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes; total cycles" ; nmdc:occurrence "1" ; nmdc:preferred_unit "number of cells per gram (or ml or cm^2)" . -MIXS:0000100 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "humidity" ; dcterms:title "humidity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "humidity" ; skos:definition "Amount of water vapour in the air, at the time of sampling" ; - skos:exactMatch MIXS:0000100 ; + skos:exactMatch ; linkml:examples "Example(value='25 gram per cubic meter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "gram per cubic meter" . -MIXS:0000101 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "methane" ; dcterms:title "methane" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "methane" ; skos:definition "Methane (gas) amount or concentration at the time of sampling" ; - skos:exactMatch MIXS:0000101 ; + skos:exactMatch ; linkml:examples "Example(value='1800 parts per billion', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter, parts per billion, parts per million" . -MIXS:0000102 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tot_nitro" ; dcterms:title "total nitrogen concentration" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "total nitrogen concentration" ; skos:definition "Total nitrogen concentration of water samples, calculated by: total nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured without filtering, reported as nitrogen" ; - skos:exactMatch MIXS:0000102 ; + skos:exactMatch ; linkml:examples "Example(value='50 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter, micromole per liter, milligram per liter" . -MIXS:0000103 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "organism_count" ; dcterms:title "organism count" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "organism count" ; skos:definition "Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)" ; - skos:exactMatch MIXS:0000103 ; + skos:exactMatch ; linkml:examples "Example(value='total prokaryotes;3.5e7 cells per milliliter;qPCR', description=None)" ; nmdc:expected_value "organism name;measurement value;enumeration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "number of cells per cubic meter, number of cells per milliliter, number of cells per cubic centimeter" . -MIXS:0000104 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "oxygen" ; dcterms:title "oxygen" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "oxygen" ; skos:definition "Oxygen (gas) amount or concentration at the time of sampling" ; - skos:exactMatch MIXS:0000104 ; + skos:exactMatch ; linkml:examples "Example(value='600 parts per million', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter, parts per million" . -MIXS:0000105 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tot_iron" ; dcterms:title "total iron" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "total iron" ; skos:definition "Concentration of total iron in the sample" ; - skos:exactMatch MIXS:0000105 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter, milligram per kilogram" . -MIXS:0000106 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "diss_inorg_phosp" ; dcterms:title "dissolved inorganic phosphorus" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "dissolved inorganic phosphorus" ; skos:definition "Concentration of dissolved inorganic phosphorus in the sample" ; - skos:exactMatch MIXS:0000106 ; + skos:exactMatch ; linkml:examples "Example(value='56.5 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter, milligram per liter, parts per million" . -MIXS:0000107 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "pollutants" ; dcterms:title "pollutants" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "pollutants" ; skos:definition "Pollutant types and, amount or concentrations measured at the time of sampling; can report multiple pollutants by entering numeric values preceded by name of pollutant" ; - skos:exactMatch MIXS:0000107 ; + skos:exactMatch ; linkml:examples "Example(value='lead;0.15 microgram per cubic meter', description=None)" ; nmdc:expected_value "pollutant name;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram, mole per liter, milligram per liter, microgram per cubic meter" . -MIXS:0000108 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "air_PM_concen" ; dcterms:title "air particulate matter concentration" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "air particulate matter concentration" ; skos:definition "Concentration of substances that remain suspended in the air, and comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can report multiple PM's by entering numeric values preceded by name of PM" ; - skos:exactMatch MIXS:0000108 ; + skos:exactMatch ; linkml:examples "Example(value='PM2.5;10 microgram per cubic meter', description=None)" ; nmdc:expected_value "particulate matter name;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "micrograms per cubic meter" . -MIXS:0000110 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_store_temp" ; dcterms:title "sample storage temperature" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sample storage temperature" ; skos:definition "Temperature at which sample was stored, e.g. -80 degree Celsius" ; - skos:exactMatch MIXS:0000110 ; + skos:exactMatch ; linkml:examples "Example(value='-80 degree Celsius', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "degree Celsius" . -MIXS:0000112 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "solar_irradiance" ; dcterms:title "solar irradiance" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "solar irradiance" ; skos:definition "The amount of solar energy that arrives at a specific area of a surface during a specific time interval" ; - skos:exactMatch MIXS:0000112 ; + skos:exactMatch ; linkml:examples "Example(value='1.36 kilowatts per square meter per day', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "kilowatts per square meter per day, ergs per square centimeter per second" . -MIXS:0000113 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "temp" ; dcterms:title "temperature" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:environment_field ; + rdfs:subPropertyOf ; skos:altLabel "temperature" ; skos:definition "Temperature of the sample at the time of sampling." ; - skos:exactMatch MIXS:0000113 ; + skos:exactMatch ; linkml:examples "Example(value='25 degree Celsius', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:preferred_unit "degree Celsius" . -MIXS:0000114 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ventilation_rate" ; dcterms:title "ventilation rate" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "ventilation rate" ; skos:definition "Ventilation rate of the system in the sampled premises" ; - skos:exactMatch MIXS:0000114 ; + skos:exactMatch ; linkml:examples "Example(value='750 cubic meter per minute', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "cubic meter per minute, liters per second" . -MIXS:0000115 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "volatile_org_comp" ; dcterms:title "volatile organic compounds" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "volatile organic compounds" ; skos:definition "Concentration of carbon-based chemicals that easily evaporate at room temperature; can report multiple volatile organic compounds by entering numeric values preceded by name of compound" ; - skos:exactMatch MIXS:0000115 ; + skos:exactMatch ; linkml:examples "Example(value='formaldehyde;500 nanogram per liter', description=None)" ; nmdc:expected_value "volatile organic compound name;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "microgram per cubic meter, parts per million, nanogram per liter" . -MIXS:0000116 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_store_dur" ; dcterms:title "sample storage duration" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sample storage duration" ; skos:definition "Duration for which the sample was stored" ; - skos:exactMatch MIXS:0000116 ; + skos:exactMatch ; linkml:examples "Example(value='P1Y6M', description=None)" ; nmdc:expected_value "duration" ; nmdc:occurrence "1" . -MIXS:0000117 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tot_phosp" ; dcterms:title "total phosphorus" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "total phosphorus" ; skos:definition "Total phosphorus concentration in the sample, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus" ; - skos:exactMatch MIXS:0000117 ; + skos:exactMatch ; linkml:examples "Example(value='0.03 milligram per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . -MIXS:0000118 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "wind_speed" ; dcterms:title "wind speed" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "wind speed" ; skos:definition "Speed of wind measured at the time of sampling" ; - skos:exactMatch MIXS:0000118 ; + skos:exactMatch ; linkml:examples "Example(value='21 kilometer per hour', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "meter per second, kilometer per hour" . -MIXS:0000119 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "diss_oxygen" ; dcterms:title "dissolved oxygen" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "dissolved oxygen" ; skos:definition "Concentration of dissolved oxygen" ; - skos:exactMatch MIXS:0000119 ; + skos:exactMatch ; linkml:examples "Example(value='175 micromole per kilogram', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per kilogram, milligram per liter" . -MIXS:0000120 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tan" ; dcterms:title "total acid number" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "total acid number" ; skos:definition "Total Acid Number¬†(TAN) is a measurement of acidity that is determined by the amount of¬†potassium hydroxide¬†in milligrams that is needed to neutralize the acids in one gram of oil.¬†It is an important quality measurement of¬†crude oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)" ; - skos:exactMatch MIXS:0000120 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000121 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "rel_air_humidity" ; dcterms:title "relative air humidity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "relative air humidity" ; skos:definition "Partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air" ; - skos:exactMatch MIXS:0000121 ; + skos:exactMatch ; linkml:examples "Example(value='80%', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "percentage" . -MIXS:0000122 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "abs_air_humidity" ; dcterms:title "absolute air humidity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "absolute air humidity" ; skos:definition "Actual mass of water vapor - mh20 - present in the air water vapor mixture" ; - skos:exactMatch MIXS:0000122 ; + skos:exactMatch ; linkml:examples "Example(value='9 gram per gram', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "gram per gram, kilogram per kilogram, kilogram, pound" . -MIXS:0000123 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "surf_humidity" ; dcterms:title "surface humidity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "surface humidity" ; skos:definition "Surfaces: water activity as a function of air and material moisture" ; - skos:exactMatch MIXS:0000123 ; + skos:exactMatch ; linkml:examples "Example(value='10%', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "percentage" . -MIXS:0000124 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "air_temp" ; dcterms:title "air temperature" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "air temperature" ; skos:definition "Temperature of the air at the time of sampling" ; - skos:exactMatch MIXS:0000124 ; + skos:exactMatch ; linkml:examples "Example(value='20 degree Celsius', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "degree Celsius" . -MIXS:0000125 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "surf_temp" ; dcterms:title "surface temperature" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "surface temperature" ; skos:definition "Temperature of the surface at the time of sampling" ; - skos:exactMatch MIXS:0000125 ; + skos:exactMatch ; linkml:examples "Example(value='15 degree Celsius', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "degree Celsius" . -MIXS:0000126 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "viscosity" ; dcterms:title "viscosity" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "viscosity" ; skos:definition "A measure of oil's resistance¬†to gradual deformation by¬†shear stress¬†or¬†tensile stress (e.g. 3.5 cp; 100 ¬∞C)" ; - skos:exactMatch MIXS:0000126 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value;measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "cP at degree Celsius" . -MIXS:0000127 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "pour_point" ; dcterms:title "pour point" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "pour point" ; skos:definition "Temperature at which a liquid becomes semi solid and loses its flow characteristics. In crude oil a high¬†pour point¬†is generally associated with a high paraffin content, typically found in crude deriving from a larger proportion of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)" ; - skos:exactMatch MIXS:0000127 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "degree Celsius" . -MIXS:0000128 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "surf_moisture" ; dcterms:title "surface moisture" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "surface moisture" ; skos:definition "Water held on a surface" ; - skos:exactMatch MIXS:0000128 ; + skos:exactMatch ; linkml:examples "Example(value='0.01 gram per square meter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "parts per million, gram per cubic meter, gram per square meter" . -MIXS:0000129 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "dew_point" ; dcterms:title "dew point" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "dew point" ; skos:definition "The temperature to which a given parcel of humid air must be cooled, at constant barometric pressure, for water vapor to condense into water." ; - skos:exactMatch MIXS:0000129 ; + skos:exactMatch ; linkml:examples "Example(value='22 degree Celsius', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "degree Celsius" . -MIXS:0000131 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "saturates_pc" ; dcterms:title "saturates wt%" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "saturates wt%" ; skos:definition "Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; - skos:exactMatch MIXS:0000131 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "name;measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "percent" . -MIXS:0000133 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "aromatics_pc" ; dcterms:title "aromatics wt%" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "aromatics wt%" ; skos:definition "Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; - skos:exactMatch MIXS:0000133 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "name;measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "percent" . -MIXS:0000134 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "resins_pc" ; dcterms:title "resins wt%" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "resins wt%" ; skos:definition "Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; - skos:exactMatch MIXS:0000134 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "name;measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "percent" . -MIXS:0000135 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "asphaltenes_pc" ; dcterms:title "asphaltenes wt%" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "asphaltenes wt%" ; skos:definition "Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; - skos:exactMatch MIXS:0000135 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "name;measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "percent" . -MIXS:0000136 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_loc_corr_rate" ; dcterms:title "corrosion rate at sample location" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "corrosion rate at sample location" ; skos:definition "Metal corrosion rate is the speed of metal deterioration due to environmental conditions. As environmental conditions change corrosion rates change accordingly. Therefore, long term corrosion rates are generally more informative than short term rates and for that reason they are preferred during reporting. In the case of suspected MIC, corrosion rate measurements at the time of sampling might provide insights into the involvement of certain microbial community members in MIC as well as potential microbial interplays" ; - skos:exactMatch MIXS:0000136 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value range" ; nmdc:occurrence "1" ; nmdc:preferred_unit "millimeter per year" . -MIXS:0000137 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "glucosidase_act" ; dcterms:title "glucosidase activity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "glucosidase activity" ; skos:definition "Measurement of glucosidase activity" ; - skos:exactMatch MIXS:0000137 ; + skos:exactMatch ; linkml:examples "Example(value='5 mol per liter per hour', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "mol per liter per hour" . -MIXS:0000139 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "diss_iron" ; dcterms:title "dissolved iron" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "dissolved iron" ; skos:definition "Concentration of dissolved iron in the sample" ; - skos:exactMatch MIXS:0000139 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000140 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "amount_light" ; dcterms:title "amount of light" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "amount of light" ; skos:definition "The unit of illuminance and luminous emittance, measuring luminous flux per unit area" ; - skos:exactMatch MIXS:0000140 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "lux, lumens per square meter" . -MIXS:0000141 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "avg_dew_point" ; dcterms:title "average dew point" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "average dew point" ; skos:definition "The average of dew point measures taken at the beginning of every hour over a 24 hour period on the sampling day" ; - skos:exactMatch MIXS:0000141 ; + skos:exactMatch ; linkml:examples "Example(value='25.5 degree Celsius', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "degree Celsius" . -MIXS:0000142 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "avg_temp" ; dcterms:title "average temperature" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "average temperature" ; skos:definition "The average of temperatures taken at the beginning of every hour over a 24 hour period on the sampling day" ; - skos:exactMatch MIXS:0000142 ; + skos:exactMatch ; linkml:examples "Example(value='12.5 degree Celsius', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "degree Celsius" . -MIXS:0000143 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ceil_thermal_mass" ; dcterms:title "ceiling thermal mass" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "ceiling thermal mass" ; skos:definition "The ability of the ceiling to provide inertia against temperature fluctuations. Generally this means concrete that is exposed. A metal deck that supports a concrete slab will act thermally as long as it is exposed to room air flow" ; - skos:exactMatch MIXS:0000143 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "joule per degree Celsius" . -MIXS:0000144 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "exp_duct" ; dcterms:title "exposed ductwork" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "exposed ductwork" ; skos:definition "The amount of exposed ductwork in the room" ; - skos:exactMatch MIXS:0000144 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "square meter" . -MIXS:0000145 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "built_struc_age" ; dcterms:title "built structure age" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "built structure age" ; skos:definition "The age of the built structure since construction" ; - skos:exactMatch MIXS:0000145 ; + skos:exactMatch ; linkml:examples "Example(value='15', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "year" . -MIXS:0000148 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ceil_area" ; dcterms:title "ceiling area" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "ceiling area" ; skos:definition "The area of the ceiling space within the room" ; - skos:exactMatch MIXS:0000148 ; + skos:exactMatch ; linkml:examples "Example(value='25 square meter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "square meter" . -MIXS:0000150 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "suspend_solids" ; dcterms:title "suspended solids" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "suspended solids" ; skos:definition "Concentration of substances including a wide variety of material, such as silt, decaying plant and animal matter; can include multiple substances" ; - skos:exactMatch MIXS:0000150 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "suspended solid name;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram, microgram, milligram per liter, mole per liter, gram per liter, part per million" . -MIXS:0000152 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "vfa" ; dcterms:title "volatile fatty acids" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "volatile fatty acids" ; skos:definition "Concentration of Volatile Fatty Acids in the sample" ; - skos:exactMatch MIXS:0000152 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter, parts per million" . -MIXS:0000153 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "benzene" ; dcterms:title "benzene" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "benzene" ; skos:definition "Concentration of benzene in the sample" ; - skos:exactMatch MIXS:0000153 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter, parts per million" . -MIXS:0000154 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "toluene" ; dcterms:title "toluene" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "toluene" ; skos:definition "Concentration of toluene in the sample" ; - skos:exactMatch MIXS:0000154 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter, parts per million" . -MIXS:0000155 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ethylbenzene" ; dcterms:title "ethylbenzene" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "ethylbenzene" ; skos:definition "Concentration of ethylbenzene in the sample" ; - skos:exactMatch MIXS:0000155 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter, parts per million" . -MIXS:0000156 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "xylene" ; dcterms:title "xylene" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "xylene" ; skos:definition "Concentration of xylene in the sample" ; - skos:exactMatch MIXS:0000156 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter, parts per million" . -MIXS:0000157 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "api" ; dcterms:title "API gravity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "API gravity" ; skos:definition "API gravity is a measure of how heavy or light a petroleum liquid is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g. 31.1¬∞ API)" ; - skos:exactMatch MIXS:0000157 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "degrees API" . -MIXS:0000158 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "door_size" ; dcterms:title "door area or size" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "door area or size" ; skos:definition "The size of the door" ; - skos:exactMatch MIXS:0000158 ; + skos:exactMatch ; linkml:examples "Example(value='2.5 square meter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "square meter" . -MIXS:0000162 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "diss_org_nitro" ; dcterms:title "dissolved organic nitrogen" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "dissolved organic nitrogen" ; skos:definition "Dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2" ; - skos:exactMatch MIXS:0000162 ; + skos:exactMatch ; linkml:examples "Example(value='0.05 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter, milligram per liter" . -MIXS:0000164 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "floor_age" ; dcterms:title "floor age" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "floor age" ; skos:definition "The time period since installment of the carpet or flooring" ; - skos:exactMatch MIXS:0000164 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "years, weeks, days" . -MIXS:0000165 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "floor_area" ; dcterms:title "floor area" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "floor area" ; skos:definition "The area of the floor space within the room" ; - skos:exactMatch MIXS:0000165 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "square meter" . -MIXS:0000166 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "floor_thermal_mass" ; dcterms:title "floor thermal mass" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "floor thermal mass" ; skos:definition "The ability of the floor to provide inertia against temperature fluctuations" ; - skos:exactMatch MIXS:0000166 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "joule per degree Celsius" . -MIXS:0000167 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "height_carper_fiber" ; dcterms:title "height carpet fiber mat" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "height carpet fiber mat" ; skos:definition "The average carpet fiber height in the indoor environment" ; - skos:exactMatch MIXS:0000167 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "centimeter" . -MIXS:0000168 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "inside_lux" ; dcterms:title "inside lux light" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "inside lux light" ; skos:definition "The recorded value at sampling time (power density)" ; - skos:exactMatch MIXS:0000168 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "kilowatt per square metre" . -MIXS:0000169 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_air_exch_rate" ; dcterms:title "room air exchange rate" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "room air exchange rate" ; skos:definition "The rate at which outside air replaces indoor air in a given space" ; - skos:exactMatch MIXS:0000169 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "liter per hour" . -MIXS:0000170 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ext_door" ; dcterms:title "exterior door count" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "exterior door count" ; skos:definition "The number of exterior doors in the built structure" ; - skos:exactMatch MIXS:0000170 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" . -MIXS:0000172 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "aminopept_act" ; dcterms:title "aminopeptidase activity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "aminopeptidase activity" ; skos:definition "Measurement of aminopeptidase activity" ; - skos:exactMatch MIXS:0000172 ; + skos:exactMatch ; linkml:examples "Example(value='0.269 mole per liter per hour', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "mole per liter per hour" . -MIXS:0000173 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "bacteria_carb_prod" ; dcterms:title "bacterial carbon production" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "bacterial carbon production" ; skos:definition "Measurement of bacterial carbon production" ; - skos:exactMatch MIXS:0000173 ; + skos:exactMatch ; linkml:examples "Example(value='2.53 microgram per liter per hour', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "nanogram per hour" . -MIXS:0000174 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "biomass" ; dcterms:title "biomass" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "biomass" ; skos:definition "Amount of biomass; should include the name for the part of biomass measured, e.g. Microbial, total. Can include multiple measurements" ; - skos:exactMatch MIXS:0000174 ; + skos:exactMatch ; linkml:examples "Example(value='total;20 gram', description=None)" ; nmdc:expected_value "biomass type;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "ton, kilogram, gram" . -MIXS:0000175 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "bishomohopanol" ; dcterms:title "bishomohopanol" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "bishomohopanol" ; skos:definition "Concentration of bishomohopanol" ; - skos:exactMatch MIXS:0000175 ; + skos:exactMatch ; linkml:examples "Example(value='14 microgram per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter, microgram per gram" . -MIXS:0000176 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "bromide" ; dcterms:title "bromide" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "bromide" ; skos:definition "Concentration of bromide" ; - skos:exactMatch MIXS:0000176 ; + skos:exactMatch ; linkml:examples "Example(value='0.05 parts per million', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "parts per million" . -MIXS:0000177 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "chlorophyll" ; dcterms:title "chlorophyll" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "chlorophyll" ; skos:definition "Concentration of chlorophyll" ; - skos:exactMatch MIXS:0000177 ; + skos:exactMatch ; linkml:examples "Example(value='5 milligram per cubic meter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per cubic meter, microgram per liter" . -MIXS:0000178 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "diether_lipids" ; dcterms:title "diether lipids" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "diether lipids" ; skos:definition "Concentration of diether lipids; can include multiple types of diether lipids" ; - skos:exactMatch MIXS:0000178 ; + skos:exactMatch ; linkml:examples "Example(value='0.2 nanogram per liter', description=None)" ; nmdc:expected_value "diether lipid name;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "nanogram per liter" . -MIXS:0000179 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "diss_hydrogen" ; dcterms:title "dissolved hydrogen" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "dissolved hydrogen" ; skos:definition "Concentration of dissolved hydrogen" ; - skos:exactMatch MIXS:0000179 ; + skos:exactMatch ; linkml:examples "Example(value='0.3 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter" . -MIXS:0000180 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "phaeopigments" ; dcterms:title "phaeopigments" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "phaeopigments" ; skos:definition "Concentration of phaeopigments; can include multiple phaeopigments" ; - skos:exactMatch MIXS:0000180 ; + skos:exactMatch ; linkml:examples "Example(value='2.5 milligram per cubic meter', description=None)" ; nmdc:expected_value "phaeopigment name;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "milligram per cubic meter" . -MIXS:0000181 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "phosplipid_fatt_acid" ; dcterms:title "phospholipid fatty acid" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "phospholipid fatty acid" ; skos:definition "Concentration of phospholipid fatty acids; can include multiple values" ; - skos:exactMatch MIXS:0000181 ; + skos:exactMatch ; linkml:examples "Example(value='2.98 milligram per liter', description=None)" ; nmdc:expected_value "phospholipid fatty acid name;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "mole per gram, mole per liter" . -MIXS:0000182 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "redox_potential" ; dcterms:title "redox potential" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "redox potential" ; skos:definition "Redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential" ; - skos:exactMatch MIXS:0000182 ; + skos:exactMatch ; linkml:examples "Example(value='300 millivolt', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "millivolt" . -MIXS:0000183 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "salinity" ; dcterms:title "salinity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "salinity" ; skos:definition "The total concentration of all dissolved salts in a liquid or solid sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater." ; - skos:exactMatch MIXS:0000183 ; + skos:exactMatch ; linkml:examples "Example(value='25 practical salinity unit', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "practical salinity unit, percentage" . -MIXS:0000184 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "silicate" ; dcterms:title "silicate" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "silicate" ; skos:definition "Concentration of silicate" ; - skos:exactMatch MIXS:0000184 ; + skos:exactMatch ; linkml:examples "Example(value='0.05 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter" . -MIXS:0000185 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "water_content" ; dcterms:title "water content" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "water content" ; skos:definition "Water content measurement" ; - skos:exactMatch MIXS:0000185 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "gram per gram or cubic centimeter per cubic centimeter" . -MIXS:0000188 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "rel_humidity_out" ; dcterms:title "outside relative humidity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "outside relative humidity" ; skos:definition "The recorded outside relative humidity value at the time of sampling" ; - skos:exactMatch MIXS:0000188 ; + skos:exactMatch ; linkml:examples "Example(value='12 per kilogram of air', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "gram of air, kilogram of air" . -MIXS:0000191 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "turbidity" ; dcterms:title "turbidity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "turbidity" ; skos:definition "Measure of the amount of cloudiness or haziness in water caused by individual particles" ; - skos:exactMatch MIXS:0000191 ; + skos:exactMatch ; linkml:examples "Example(value='0.3 nephelometric turbidity units', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "formazin turbidity unit, formazin nephelometric units" . -MIXS:0000192 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_dim" ; dcterms:title "room dimensions" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "room dimensions" ; skos:definition "The length, width and height of sampling room" ; - skos:exactMatch MIXS:0000192 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "meter" . -MIXS:0000193 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_door_dist" ; dcterms:title "room door distance" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "room door distance" ; skos:definition "Distance between doors (meters) in the hallway between the sampling room and adjacent rooms" ; - skos:exactMatch MIXS:0000193 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "meter" . -MIXS:0000194 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_net_area" ; dcterms:title "room net area" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "room net area" ; skos:definition "The net floor area of sampling room. Net area excludes wall thicknesses" ; - skos:exactMatch MIXS:0000194 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "square feet, square meter" . -MIXS:0000195 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_vol" ; dcterms:title "room volume" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "room volume" ; skos:definition "Volume of sampling room" ; - skos:exactMatch MIXS:0000195 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "cubic feet, cubic meter" . -MIXS:0000196 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_time_out" ; dcterms:title "sampling time outside" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sampling time outside" ; skos:definition "The recent and long term history of outside sampling" ; - skos:exactMatch MIXS:0000196 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "time" ; nmdc:occurrence "1" ; nmdc:preferred_unit "hour" . -MIXS:0000197 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "temp_out" ; dcterms:title "temperature outside house" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "temperature outside house" ; skos:definition "The recorded temperature value at sampling time outside" ; - skos:exactMatch MIXS:0000197 ; + skos:exactMatch ; linkml:examples "Example(value='5 degree Celsius', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "degree Celsius" . -MIXS:0000198 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "wall_area" ; dcterms:title "wall area" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "wall area" ; skos:definition "The total area of the sampled room's walls" ; - skos:exactMatch MIXS:0000198 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "square meter" . -MIXS:0000203 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "water_current" ; dcterms:title "water current" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "water current" ; skos:definition "Measurement of magnitude and direction of flow within a fluid" ; - skos:exactMatch MIXS:0000203 ; + skos:exactMatch ; linkml:examples "Example(value='10 cubic meter per second', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "cubic meter per second, knots" . -MIXS:0000204 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "org_matter" ; dcterms:title "organic matter" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "organic matter" ; skos:definition "Concentration of organic matter" ; - skos:exactMatch MIXS:0000204 ; + skos:exactMatch ; linkml:examples "Example(value='1.75 milligram per cubic meter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter" . -MIXS:0000205 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "org_nitro" ; dcterms:title "organic nitrogen" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "organic nitrogen" ; skos:definition "Concentration of organic nitrogen" ; - skos:exactMatch MIXS:0000205 ; + skos:exactMatch ; linkml:examples "Example(value='4 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter" . -MIXS:0000206 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "particle_class" ; dcterms:title "particle classification" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "particle classification" ; skos:definition "Particles are classified, based on their size, into six general categories:clay, silt, sand, gravel, cobbles, and boulders; should include amount of particle preceded by the name of the particle type; can include multiple values" ; - skos:exactMatch MIXS:0000206 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "particle name;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "micrometer" . -MIXS:0000211 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "porosity" ; dcterms:title "porosity" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "porosity" ; skos:definition "Porosity of deposited sediment is volume of voids divided by the total volume of sample" ; - skos:exactMatch MIXS:0000211 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value or range" ; nmdc:occurrence "1" ; nmdc:preferred_unit "percentage" . -MIXS:0000214 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "specific_humidity" ; dcterms:title "specific humidity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "specific humidity" ; skos:definition "The mass of water vapour in a unit mass of moist air, usually expressed as grams of vapour per kilogram of air, or, in air conditioning, as grains per pound." ; - skos:exactMatch MIXS:0000214 ; + skos:exactMatch ; linkml:examples "Example(value='15 per kilogram of air', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "gram of air, kilogram of air" . -MIXS:0000215 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "sewage_type" ; dcterms:title "sewage type" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sewage type" ; skos:definition "Type of wastewater treatment plant as municipial or industrial" ; - skos:exactMatch MIXS:0000215 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "sewage type name" ; nmdc:occurrence "1" . -MIXS:0000216 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_sort_meth" ; dcterms:title "sample size sorting method" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sample size sorting method" ; skos:definition "Method by which samples are sorted; open face filter collecting total suspended particles, prefilter to remove particles larger than X micrometers in diameter, where common values of X would be 10 and 2.5 full size sorting in a cascade impactor." ; - skos:exactMatch MIXS:0000216 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "description of method" ; nmdc:occurrence "m" . -MIXS:0000217 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "occup_density_samp" ; dcterms:title "occupant density at sampling" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "occupant density at sampling" ; skos:definition "Average number of occupants at time of sampling per square footage" ; - skos:exactMatch MIXS:0000217 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" . -MIXS:0000218 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "address" ; dcterms:title "address" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "address" ; skos:definition "The street name and building number where the sampling occurred." ; - skos:exactMatch MIXS:0000218 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" . -MIXS:0000219 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "adj_room" ; dcterms:title "adjacent rooms" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "adjacent rooms" ; skos:definition "List of rooms (room number, room name) immediately adjacent to the sampling room" ; - skos:exactMatch MIXS:0000219 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "room name;room number" ; nmdc:occurrence "1" . -MIXS:0000220 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "exp_pipe" ; dcterms:title "exposed pipes" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "exposed pipes" ; skos:definition "The number of exposed pipes in the room" ; - skos:exactMatch MIXS:0000220 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" . -MIXS:0000221 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "wall_height" ; dcterms:title "wall height" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "wall height" ; skos:definition "The average height of the walls in the sampled room" ; - skos:exactMatch MIXS:0000221 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "centimeter" . -MIXS:0000222 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "wall_thermal_mass" ; dcterms:title "wall thermal mass" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "wall thermal mass" ; skos:definition "The ability of the wall to provide inertia against temperature fluctuations. Generally this means concrete or concrete block that is either exposed or covered only with paint" ; - skos:exactMatch MIXS:0000222 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "joule per degree Celsius" . -MIXS:0000223 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "water_feat_size" ; dcterms:title "water feature size" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "water feature size" ; skos:definition "The size of the water feature" ; - skos:exactMatch MIXS:0000223 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "square meter" . -MIXS:0000224 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "window_size" ; dcterms:title "window area/size" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "window area/size" ; skos:definition "The window's length and width" ; - skos:exactMatch MIXS:0000224 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "inch, meter" . -MIXS:0000225 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "floor_count" ; dcterms:title "floor count" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "floor count" ; skos:definition "The number of floors in the building, including basements and mechanical penthouse" ; - skos:exactMatch MIXS:0000225 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" . -MIXS:0000226 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "freq_clean" ; dcterms:title "frequency of cleaning" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "frequency of cleaning" ; skos:definition "The number of times the sample location is cleaned. Frequency of cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually." ; - skos:exactMatch MIXS:0000226 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "enumeration or {text}" ; nmdc:occurrence "1" . -MIXS:0000227 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "freq_cook" ; dcterms:title "frequency of cooking" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "frequency of cooking" ; skos:definition "The number of times a meal is cooked per week" ; - skos:exactMatch MIXS:0000227 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" . -MIXS:0000228 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "hall_count" ; dcterms:title "hallway/corridor count" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "hallway/corridor count" ; skos:definition "The total count of hallways and cooridors in the built structure" ; - skos:exactMatch MIXS:0000228 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" . -MIXS:0000229 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "max_occup" ; dcterms:title "maximum occupancy" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "maximum occupancy" ; skos:definition "The maximum amount of people allowed in the indoor environment" ; - skos:exactMatch MIXS:0000229 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" . -MIXS:0000230 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "number_plants" ; dcterms:title "number of houseplants" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "number of houseplants" ; skos:definition "The number of plant(s) in the sampling space" ; - skos:exactMatch MIXS:0000230 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" . -MIXS:0000231 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "number_pets" ; dcterms:title "number of pets" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "number of pets" ; skos:definition "The number of pets residing in the sampled space" ; - skos:exactMatch MIXS:0000231 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" . -MIXS:0000232 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "number_resident" ; dcterms:title "number of residents" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "number of residents" ; skos:definition "The number of individuals currently occupying in the sampling location" ; - skos:exactMatch MIXS:0000232 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" . -MIXS:0000233 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_architec_elem" ; dcterms:title "room architectural elements" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "room architectural elements" ; skos:definition "The unique details and component parts that, together, form the architecture of a distinguisahable space within a built structure" ; - skos:exactMatch MIXS:0000233 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "free text" ; nmdc:occurrence "1" . -MIXS:0000234 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_count" ; dcterms:title "room count" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "room count" ; skos:definition "The total count of rooms in the built structure including all room types" ; - skos:exactMatch MIXS:0000234 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" . -MIXS:0000235 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_moist_dam_hist" ; dcterms:title "room moisture damage or mold history" ; rdfs:range linkml:Integer ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "room moisture damage or mold history" ; skos:definition "The history of moisture damage or mold in the past 12 months. Number of events of moisture damage or mold observed" ; - skos:exactMatch MIXS:0000235 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" . -MIXS:0000236 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_occup" ; dcterms:title "room occupancy" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "room occupancy" ; skos:definition "Count of room occupancy at time of sampling" ; - skos:exactMatch MIXS:0000236 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" . -MIXS:0000237 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_window_count" ; dcterms:title "room window count" ; rdfs:range linkml:Integer ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "room window count" ; skos:definition "Number of windows in the room" ; - skos:exactMatch MIXS:0000237 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" . -MIXS:0000238 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_hallway" ; dcterms:title "rooms that are on the same hallway" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "rooms that are on the same hallway" ; skos:definition "List of room(s) (room number, room name) located in the same hallway as sampling room" ; - skos:exactMatch MIXS:0000238 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "room name;room number" ; nmdc:occurrence "1" . -MIXS:0000242 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_door_share" ; dcterms:title "rooms that share a door with sampling room" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "rooms that share a door with sampling room" ; skos:definition "List of room(s) (room number, room name) sharing a door with the sampling room" ; - skos:exactMatch MIXS:0000242 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "room name;room number" ; nmdc:occurrence "1" . -MIXS:0000243 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_wall_share" ; dcterms:title "rooms that share a wall with sampling room" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "rooms that share a wall with sampling room" ; skos:definition "List of room(s) (room number, room name) sharing a wall with the sampling room" ; - skos:exactMatch MIXS:0000243 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "room name;room number" ; nmdc:occurrence "1" . -MIXS:0000244 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_room_id" ; dcterms:title "sampling room ID or name" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sampling room ID or name" ; skos:definition "Sampling room number. This ID should be consistent with the designations on the building floor plans" ; - skos:exactMatch MIXS:0000244 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" . -MIXS:0000245 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "shading_device_mat" ; dcterms:title "shading device material" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "shading device material" ; skos:definition "The material the shading device is composed of" ; - skos:exactMatch MIXS:0000245 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "material name" ; nmdc:occurrence "1" . -MIXS:0000246 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "window_open_freq" ; dcterms:title "window open frequency" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "window open frequency" ; skos:definition "The number of times windows are opened per week" ; - skos:exactMatch MIXS:0000246 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" . -MIXS:0000247 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ances_data" ; dcterms:title "ancestral data" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "ancestral data" ; skos:definition "Information about either pedigree or other ancestral information description (e.g. parental variety in case of mutant or selection), e.g. A/3*B (meaning [(A x B) x B] x B)" ; - skos:exactMatch MIXS:0000247 ; + skos:exactMatch ; linkml:examples "Example(value='A/3*B', description=None)" ; nmdc:expected_value "free text" ; nmdc:occurrence "1" . -MIXS:0000248 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_common_name" ; dcterms:title "host common name" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host common name" ; skos:definition "Common name of the host." ; - skos:exactMatch MIXS:0000248 ; + skos:exactMatch ; linkml:examples "Example(value='human', description=None)" ; nmdc:expected_value "common name" ; nmdc:occurrence "1" . -MIXS:0000249 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_dis_stage" ; dcterms:title "sample disease stage" ; - rdfs:range MIXS:SampDisStageEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "sample disease stage" ; skos:definition "Stage of the disease at the time of sample collection, e.g. inoculation, penetration, infection, growth and reproduction, dissemination of pathogen." ; - skos:exactMatch MIXS:0000249 ; + skos:exactMatch ; linkml:examples "Example(value='infection', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000250 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_taxid" ; dcterms:title "host taxid" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host taxid" ; skos:definition "NCBI taxon id of the host, e.g. 9606" ; - skos:exactMatch MIXS:0000250 ; + skos:exactMatch ; linkml:examples "Example(value='7955', description=None)" ; nmdc:expected_value "NCBI taxon identifier" ; nmdc:occurrence "1" . -MIXS:0000251 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_life_stage" ; dcterms:title "host life stage" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host life stage" ; skos:definition "Description of life stage of host" ; - skos:exactMatch MIXS:0000251 ; + skos:exactMatch ; linkml:examples "Example(value='adult', description=None)" ; nmdc:expected_value "stage" ; nmdc:occurrence "1" . -MIXS:0000252 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_substrate" ; dcterms:title "host substrate" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host substrate" ; skos:definition "The growth substrate of the host." ; - skos:exactMatch MIXS:0000252 ; + skos:exactMatch ; linkml:examples "Example(value='rock', description=None)" ; nmdc:expected_value "substrate name" ; nmdc:occurrence "1" . -MIXS:0000255 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_age" ; dcterms:title "host age" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host age" ; skos:definition "Age of host at the time of sampling; relevant scale depends on species and study, e.g. Could be seconds for amoebae or centuries for trees" ; - skos:exactMatch MIXS:0000255 ; + skos:exactMatch ; linkml:examples "Example(value='10 days', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "year, day, hour" . -MIXS:0000256 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_length" ; dcterms:title "host length" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host length" ; skos:definition "The length of subject" ; - skos:exactMatch MIXS:0000256 ; + skos:exactMatch ; linkml:examples "Example(value='1 meter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "centimeter, millimeter, meter" . -MIXS:0000257 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_dry_mass" ; dcterms:title "host dry mass" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host dry mass" ; skos:definition "Measurement of dry mass" ; - skos:exactMatch MIXS:0000257 ; + skos:exactMatch ; linkml:examples "Example(value='500 gram', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "kilogram, gram" . -MIXS:0000258 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "blood_press_diast" ; dcterms:title "host blood pressure diastolic" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host blood pressure diastolic" ; skos:definition "Resting diastolic blood pressure, measured as mm mercury" ; - skos:exactMatch MIXS:0000258 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "millimeter mercury" . -MIXS:0000259 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "blood_press_syst" ; dcterms:title "host blood pressure systolic" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host blood pressure systolic" ; skos:definition "Resting systolic blood pressure, measured as mm mercury" ; - skos:exactMatch MIXS:0000259 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "millimeter mercury" . -MIXS:0000260 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_color" ; dcterms:title "host color" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host color" ; skos:definition "The color of host" ; - skos:exactMatch MIXS:0000260 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "color" ; nmdc:occurrence "1" . -MIXS:0000261 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_shape" ; dcterms:title "host shape" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host shape" ; skos:definition "Morphological shape of host" ; - skos:exactMatch MIXS:0000261 ; + skos:exactMatch ; linkml:examples "Example(value='round', description=None)" ; nmdc:expected_value "shape" ; nmdc:occurrence "1" . -MIXS:0000263 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_tot_mass" ; dcterms:title "host total mass" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host total mass" ; skos:definition "Total mass of the host at collection, the unit depends on host" ; - skos:exactMatch MIXS:0000263 ; + skos:exactMatch ; linkml:examples "Example(value='2500 gram', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "kilogram, gram" . -MIXS:0000264 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_height" ; dcterms:title "host height" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host height" ; skos:definition "The height of subject" ; - skos:exactMatch MIXS:0000264 ; + skos:exactMatch ; linkml:examples "Example(value='0.1 meter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "centimeter, millimeter, meter" . -MIXS:0000274 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_body_temp" ; dcterms:title "host body temperature" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host body temperature" ; skos:definition "Core body temperature of the host when sample was collected" ; - skos:exactMatch MIXS:0000274 ; + skos:exactMatch ; linkml:examples "Example(value='15 degree Celsius', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "degree Celsius" . -MIXS:0000290 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "basin" ; dcterms:title "basin name" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "basin name" ; skos:definition "Name of the basin (e.g. Campos)" ; - skos:exactMatch MIXS:0000290 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "name" ; nmdc:occurrence "1" . -MIXS:0000291 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "field" ; dcterms:title "field name" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "field name" ; skos:definition "Name of the hydrocarbon field (e.g. Albacora)" ; - skos:exactMatch MIXS:0000291 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "name" ; nmdc:occurrence "1" . -MIXS:0000296 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_well_name" ; dcterms:title "sample well name" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sample well name" ; skos:definition "Name of the well (e.g. BXA1123) where sample was taken" ; - skos:exactMatch MIXS:0000296 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "name" ; nmdc:occurrence "1" . -MIXS:0000297 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "win" ; dcterms:title "well identification number" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "well identification number" ; skos:definition "A unique identifier of a well or wellbore. This is part of the Global Framework for Well Identification initiative which is compiled by the Professional Petroleum Data Management Association (PPDM) in an effort to improve well identification systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)" ; - skos:exactMatch MIXS:0000297 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "text" ; nmdc:occurrence "1" . -MIXS:0000298 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "alkalinity_method" ; dcterms:title "alkalinity method" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "alkalinity method" ; skos:definition "Method used for alkalinity measurement" ; - skos:exactMatch MIXS:0000298 ; + skos:exactMatch ; linkml:examples "Example(value='titration', description=None)" ; nmdc:expected_value "description of method" ; nmdc:occurrence "1" . -MIXS:0000300 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "additional_info" ; dcterms:title "additional info" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "additional info" ; skos:definition "Information that doesn't fit anywhere else. Can also be used to propose new entries for fields with controlled vocabulary" ; - skos:exactMatch MIXS:0000300 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "text" ; nmdc:occurrence "1" . -MIXS:0000303 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "reservoir" ; dcterms:title "reservoir name" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "reservoir name" ; skos:definition "Name of the reservoir (e.g. Carapebus)" ; - skos:exactMatch MIXS:0000303 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "name" ; nmdc:occurrence "1" . -MIXS:0000310 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "carb_nitro_ratio" ; dcterms:title "carbon/nitrogen ratio" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "carbon/nitrogen ratio" ; skos:definition "Ratio of amount or concentrations of carbon to nitrogen" ; - skos:exactMatch MIXS:0000310 ; + skos:exactMatch ; linkml:examples "Example(value='0.417361111', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" . -MIXS:0000312 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "cur_vegetation" ; dcterms:title "current vegetation" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "current vegetation" ; skos:definition "Vegetation classification from one or more standard classification systems, or agricultural crop" ; - skos:exactMatch MIXS:0000312 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "current vegetation type" ; nmdc:occurrence "1" . -MIXS:0000314 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "cur_vegetation_meth" ; dcterms:title "current vegetation method" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "current vegetation method" ; skos:definition "Reference or method used in vegetation classification" ; - skos:exactMatch MIXS:0000314 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0000315 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "previous_land_use" ; dcterms:title "history/previous land use" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "history/previous land use" ; skos:definition "Previous land use and dates" ; - skos:exactMatch MIXS:0000315 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "land use name;date" ; nmdc:occurrence "1" . -MIXS:0000316 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "prev_land_use_meth" ; dcterms:title "history/previous land use method" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "history/previous land use method" ; skos:definition "Reference or method used in determining previous land use and dates" ; - skos:exactMatch MIXS:0000316 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0000318 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "crop_rotation" ; dcterms:title "history/crop rotation" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "history/crop rotation" ; skos:definition "Whether or not crop is rotated, and if yes, rotation schedule" ; - skos:exactMatch MIXS:0000318 ; + skos:exactMatch ; linkml:examples "Example(value='yes;R2/2017-01-01/2018-12-31/P6M', description=None)" ; nmdc:expected_value "crop rotation status;schedule" ; nmdc:occurrence "1" . -MIXS:0000319 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "flooding" ; dcterms:title "history/flooding" ; rdfs:range nmdc:TimestampValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "history/flooding" ; skos:definition "Historical and/or physical evidence of flooding" ; - skos:exactMatch MIXS:0000319 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "date" ; nmdc:occurrence "1" . -MIXS:0000320 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "extreme_event" ; dcterms:title "history/extreme events" ; rdfs:range nmdc:TimestampValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "history/extreme events" ; skos:definition "Unusual physical events that may have affected microbial populations" ; - skos:exactMatch MIXS:0000320 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "date" ; nmdc:occurrence "1" . -MIXS:0000321 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "horizon_meth" ; dcterms:title "soil horizon method" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "soil horizon method" ; skos:definition "Reference or method used in determining the horizon" ; - skos:exactMatch MIXS:0000321 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0000322 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "sieving" ; dcterms:title "composite design/sieving" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "composite design/sieving" ; skos:definition "Collection design of pooled samples and/or sieve size and amount of sample sieved" ; - skos:exactMatch MIXS:0000322 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "design name and/or size;amount" ; nmdc:occurrence "1" . -MIXS:0000323 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "water_cont_soil_meth" ; dcterms:title "water content method" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "water content method" ; skos:definition "Reference or method used in determining the water content of soil" ; - skos:exactMatch MIXS:0000323 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0000324 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "al_sat_meth" ; dcterms:title "extreme_unusual_properties/Al saturation method" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "extreme_unusual_properties/Al saturation method" ; skos:definition "Reference or method used in determining Al saturation" ; - skos:exactMatch MIXS:0000324 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or URL" ; nmdc:occurrence "1" . -MIXS:0000325 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "pool_dna_extracts" ; dcterms:title "pooling of DNA extracts (if done)" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "pooling of DNA extracts (if done)" ; skos:definition "Indicate whether multiple DNA extractions were mixed. If the answer yes, the number of extracts that were pooled should be given" ; - skos:exactMatch MIXS:0000325 ; + skos:exactMatch ; linkml:examples "Example(value='yes;5', description=None)" ; nmdc:expected_value "pooling status;number of pooled extracts" ; nmdc:occurrence "1" . -MIXS:0000327 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "store_cond" ; dcterms:title "storage conditions" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "storage conditions" ; skos:definition "Explain how and for how long the soil sample was stored before DNA extraction (fresh/frozen/other)." ; - skos:exactMatch MIXS:0000327 ; + skos:exactMatch ; linkml:examples "Example(value='-20 degree Celsius freezer;P2Y10D', description=None)" ; nmdc:expected_value "storage condition type;duration" ; nmdc:occurrence "1" . -MIXS:0000328 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "link_climate_info" ; dcterms:title "link to climate information" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "link to climate information" ; skos:definition "Link to climate resource" ; - skos:exactMatch MIXS:0000328 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0000329 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "link_class_info" ; dcterms:title "link to classification information" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "link to classification information" ; skos:definition "Link to digitized soil maps or other soil classification information" ; - skos:exactMatch MIXS:0000329 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0000330 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "local_class" ; dcterms:title "soil_taxonomic/local classification" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "soil_taxonomic/local classification" ; skos:definition "Soil classification based on local soil classification system" ; - skos:exactMatch MIXS:0000330 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "local classification name" ; nmdc:occurrence "1" . -MIXS:0000331 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "local_class_meth" ; dcterms:title "soil_taxonomic/local classification method" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "soil_taxonomic/local classification method" ; skos:definition "Reference or method used in determining the local soil classification" ; - skos:exactMatch MIXS:0000331 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0000332 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "soil_type" ; dcterms:title "soil type" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "soil type" ; skos:definition "Description of the soil type or classification. This field accepts terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple terms can be separated by pipes." ; - skos:exactMatch MIXS:0000332 ; + skos:exactMatch ; linkml:examples "Example(value='plinthosol [ENVO:00002250]', description=None)" ; nmdc:expected_value "ENVO_00001998" ; nmdc:occurrence "1" . -MIXS:0000334 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "soil_type_meth" ; dcterms:title "soil type method" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "soil type method" ; skos:definition "Reference or method used in determining soil series name or other lower-level classification" ; - skos:exactMatch MIXS:0000334 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0000335 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "soil_text_measure" ; dcterms:title "soil texture measurement" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "soil texture measurement" ; skos:definition "The relative proportion of different grain sizes of mineral particles in a soil, as described using a standard system; express as % sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty clay loam) optional." ; - skos:exactMatch MIXS:0000335 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" . -MIXS:0000336 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "soil_texture_meth" ; dcterms:title "soil texture method" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "soil texture method" ; skos:definition "Reference or method used in determining soil texture" ; - skos:exactMatch MIXS:0000336 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0000337 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tot_org_c_meth" ; dcterms:title "total organic carbon method" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "total organic carbon method" ; skos:definition "Reference or method used in determining total organic carbon" ; - skos:exactMatch MIXS:0000337 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0000338 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tot_nitro_cont_meth" ; dcterms:title "total nitrogen content method" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "total nitrogen content method" ; skos:definition "Reference or method used in determining the total nitrogen" ; - skos:exactMatch MIXS:0000338 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0000339 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "micro_biomass_meth" ; dcterms:title "microbial biomass method" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "microbial biomass method" ; skos:definition "Reference or method used in determining microbial biomass" ; - skos:exactMatch MIXS:0000339 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0000340 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "link_addit_analys" ; dcterms:title "links to additional analysis" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "links to additional analysis" ; skos:definition "Link to additional analysis results performed on the sample" ; - skos:exactMatch MIXS:0000340 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0000341 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "salinity_meth" ; dcterms:title "salinity method" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "salinity method" ; skos:definition "Reference or method used in determining salinity" ; - skos:exactMatch MIXS:0000341 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0000343 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "heavy_metals_meth" ; dcterms:title "extreme_unusual_properties/heavy metals method" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "extreme_unusual_properties/heavy metals method" ; skos:definition "Reference or method used in determining heavy metals" ; - skos:exactMatch MIXS:0000343 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0000348 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "pre_treatment" ; dcterms:title "pre-treatment" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "pre-treatment" ; skos:definition "The process of pre-treatment removes materials that can be easily collected from the raw wastewater" ; - skos:exactMatch MIXS:0000348 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "pre-treatment type" ; nmdc:occurrence "1" . -MIXS:0000349 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "primary_treatment" ; dcterms:title "primary treatment" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "primary treatment" ; skos:definition "The process to produce both a generally homogeneous liquid capable of being treated biologically and a sludge that can be separately treated or processed" ; - skos:exactMatch MIXS:0000349 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "primary treatment type" ; nmdc:occurrence "1" . -MIXS:0000350 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "reactor_type" ; dcterms:title "reactor type" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "reactor type" ; skos:definition "Anaerobic digesters can be designed and engineered to operate using a number of different process configurations, as batch or continuous, mesophilic, high solid or low solid, and single stage or multistage" ; - skos:exactMatch MIXS:0000350 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "reactor type name" ; nmdc:occurrence "1" . -MIXS:0000351 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "secondary_treatment" ; dcterms:title "secondary treatment" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "secondary treatment" ; skos:definition "The process for substantially degrading the biological content of the sewage" ; - skos:exactMatch MIXS:0000351 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "secondary treatment type" ; nmdc:occurrence "1" . -MIXS:0000352 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tertiary_treatment" ; dcterms:title "tertiary treatment" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "tertiary treatment" ; skos:definition "The process providing a final treatment stage to raise the effluent quality before it is discharged to the receiving environment" ; - skos:exactMatch MIXS:0000352 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "tertiary treatment type" ; nmdc:occurrence "1" . -MIXS:0000353 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "wastewater_type" ; dcterms:title "wastewater type" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "wastewater type" ; skos:definition "The origin of wastewater such as human waste, rainfall, storm drains, etc." ; - skos:exactMatch MIXS:0000353 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "wastewater type name" ; nmdc:occurrence "1" . -MIXS:0000365 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_genotype" ; dcterms:title "host genotype" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host genotype" ; skos:definition "Observed genotype" ; - skos:exactMatch MIXS:0000365 ; + skos:exactMatch ; linkml:examples "Example(value='C57BL/6', description=None)" ; nmdc:expected_value "genotype" ; nmdc:occurrence "1" . -MIXS:0000393 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "hcr_temp" ; dcterms:title "hydrocarbon resource original temperature" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "hydrocarbon resource original temperature" ; skos:definition "Original temperature of the hydrocarbon resource" ; - skos:exactMatch MIXS:0000393 ; + skos:exactMatch ; linkml:examples "Example(value='150-295 degree Celsius', description=None)" ; nmdc:expected_value "measurement value range" ; nmdc:occurrence "1" ; nmdc:preferred_unit "degree Celsius" . -MIXS:0000394 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tvdss_of_hcr_temp" ; dcterms:title "depth (TVDSS) of hydrocarbon resource temperature" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "depth (TVDSS) of hydrocarbon resource temperature" ; skos:definition "True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original temperature was measured (e.g. 1345 m)." ; - skos:exactMatch MIXS:0000394 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "meter" . -MIXS:0000395 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "hcr_pressure" ; dcterms:title "hydrocarbon resource original pressure" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "hydrocarbon resource original pressure" ; skos:definition "Original pressure of the hydrocarbon resource" ; - skos:exactMatch MIXS:0000395 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value range" ; nmdc:occurrence "1" ; nmdc:preferred_unit "atmosphere, kilopascal" . -MIXS:0000397 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tvdss_of_hcr_press" ; dcterms:title "depth (TVDSS) of hydrocarbon resource pressure" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "depth (TVDSS) of hydrocarbon resource pressure" ; skos:definition "True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original pressure was measured (e.g. 1578 m)." ; - skos:exactMatch MIXS:0000397 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "meter" . -MIXS:0000404 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "permeability" ; dcterms:title "permeability" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "permeability" ; skos:definition "Measure of the ability of a hydrocarbon resource to allow fluids to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences))" ; - skos:exactMatch MIXS:0000404 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value range" ; nmdc:occurrence "1" ; nmdc:preferred_unit "mD" . -MIXS:0000405 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "owc_tvdss" ; dcterms:title "oil water contact depth" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "oil water contact depth" ; skos:definition "Depth of the original oil water contact (OWC) zone (average) (m TVDSS)" ; - skos:exactMatch MIXS:0000405 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "meter" . -MIXS:0000406 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "hcr_fw_salinity" ; dcterms:title "formation water salinity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "formation water salinity" ; skos:definition "Original formation water salinity (prior to secondary recovery e.g. Waterflooding) expressed as TDS" ; - skos:exactMatch MIXS:0000406 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000407 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "sulfate_fw" ; dcterms:title "sulfate in formation water" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sulfate in formation water" ; skos:definition "Original sulfate concentration in the hydrocarbon resource" ; - skos:exactMatch MIXS:0000407 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000408 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "vfa_fw" ; dcterms:title "vfa in formation water" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "vfa in formation water" ; skos:definition "Original volatile fatty acid concentration in the hydrocarbon resource" ; - skos:exactMatch MIXS:0000408 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000409 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_tvdss" ; dcterms:title "sample true vertical depth subsea" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sample true vertical depth subsea" ; skos:definition "Depth of the sample i.e. The vertical distance between the sea level and the sampled position in the subsurface. Depth can be reported as an interval for subsurface samples e.g. 1325.75-1362.25 m" ; - skos:exactMatch MIXS:0000409 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value or measurement value range" ; nmdc:occurrence "1" ; nmdc:preferred_unit "meter" . -MIXS:0000410 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_transport_cond" ; dcterms:title "sample transport conditions" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sample transport conditions" ; skos:definition "Sample transport duration (in days or hrs) and temperature the sample was exposed to (e.g. 5.5 days; 20 ¬∞C)" ; - skos:exactMatch MIXS:0000410 ; + skos:exactMatch ; linkml:examples "Example(value='5 days;-20 degree Celsius', description=None)" ; nmdc:expected_value "measurement value;measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "days;degree Celsius" . -MIXS:0000412 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "pressure" ; dcterms:title "pressure" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "pressure" ; skos:definition "Pressure to which the sample is subject to, in atmospheres" ; - skos:exactMatch MIXS:0000412 ; + skos:exactMatch ; linkml:examples "Example(value='50 atmosphere', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "atmosphere" . -MIXS:0000413 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_md" ; dcterms:title "sample measured depth" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sample measured depth" ; skos:definition "In non deviated well, measured depth is equal to the true vertical depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated wells, the MD is the length of trajectory of the borehole measured from the same reference or datum. Common datums used are ground level (GL), drilling rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:exactMatch MIXS:0000413 ; + skos:exactMatch ; linkml:examples "Example(value='1534 meter;MSL', description=None)" ; nmdc:expected_value "measurement value;enumeration" ; nmdc:occurrence "1" ; nmdc:preferred_unit "meter" . -MIXS:0000419 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tot_sulfur" ; dcterms:title "total sulfur" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "total sulfur" ; skos:definition "Concentration of total sulfur in the sample" ; - skos:exactMatch MIXS:0000419 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter, parts per million" . -MIXS:0000421 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "alkalinity" ; dcterms:title "alkalinity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "alkalinity" ; skos:definition "Alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate" ; - skos:exactMatch MIXS:0000421 ; + skos:exactMatch ; linkml:examples "Example(value='50 milligram per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milliequivalent per liter, milligram per liter" . -MIXS:0000423 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "sulfate" ; dcterms:title "sulfate" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sulfate" ; skos:definition "Concentration of sulfate in the sample" ; - skos:exactMatch MIXS:0000423 ; + skos:exactMatch ; linkml:examples "Example(value='5 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . -MIXS:0000424 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "sulfide" ; dcterms:title "sulfide" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sulfide" ; skos:definition "Concentration of sulfide in the sample" ; - skos:exactMatch MIXS:0000424 ; + skos:exactMatch ; linkml:examples "Example(value='2 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . -MIXS:0000425 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "nitrate" ; dcterms:title "nitrate" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "nitrate" ; skos:definition "Concentration of nitrate in the sample" ; - skos:exactMatch MIXS:0000425 ; + skos:exactMatch ; linkml:examples "Example(value='65 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . -MIXS:0000426 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "nitrite" ; dcterms:title "nitrite" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "nitrite" ; skos:definition "Concentration of nitrite in the sample" ; - skos:exactMatch MIXS:0000426 ; + skos:exactMatch ; linkml:examples "Example(value='0.5 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . -MIXS:0000427 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ammonium" ; dcterms:title "ammonium" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "ammonium" ; skos:definition "Concentration of ammonium in the sample" ; - skos:exactMatch MIXS:0000427 ; + skos:exactMatch ; linkml:examples "Example(value='1.5 milligram per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . -MIXS:0000428 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "sodium" ; dcterms:title "sodium" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sodium" ; skos:definition "Sodium concentration in the sample" ; - skos:exactMatch MIXS:0000428 ; + skos:exactMatch ; linkml:examples "Example(value='10.5 milligram per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter, parts per million" . -MIXS:0000429 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "chloride" ; dcterms:title "chloride" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "chloride" ; skos:definition "Concentration of chloride in the sample" ; - skos:exactMatch MIXS:0000429 ; + skos:exactMatch ; linkml:examples "Example(value='5000 milligram per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter, parts per million" . -MIXS:0000430 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "potassium" ; dcterms:title "potassium" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "potassium" ; skos:definition "Concentration of potassium in the sample" ; - skos:exactMatch MIXS:0000430 ; + skos:exactMatch ; linkml:examples "Example(value='463 milligram per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter, parts per million" . -MIXS:0000431 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "magnesium" ; dcterms:title "magnesium" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "magnesium" ; skos:definition "Concentration of magnesium in the sample" ; - skos:exactMatch MIXS:0000431 ; + skos:exactMatch ; linkml:examples "Example(value='52.8 micromole per kilogram', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "mole per liter, milligram per liter, parts per million, micromole per kilogram" . -MIXS:0000432 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "calcium" ; dcterms:title "calcium" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "calcium" ; skos:definition "Concentration of calcium in the sample" ; - skos:exactMatch MIXS:0000432 ; + skos:exactMatch ; linkml:examples "Example(value='0.2 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter, micromole per liter, parts per million" . -MIXS:0000433 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "diss_org_carb" ; dcterms:title "dissolved organic carbon" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "dissolved organic carbon" ; skos:definition "Concentration of dissolved organic carbon in the sample, liquid portion of the sample, or aqueous phase of the fluid" ; - skos:exactMatch MIXS:0000433 ; + skos:exactMatch ; linkml:examples "Example(value='197 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter, milligram per liter" . -MIXS:0000434 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "diss_inorg_carb" ; dcterms:title "dissolved inorganic carbon" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "dissolved inorganic carbon" ; skos:definition "Dissolved inorganic carbon concentration in the sample, typically measured after filtering the sample using a 0.45 micrometer filter" ; - skos:exactMatch MIXS:0000434 ; + skos:exactMatch ; linkml:examples "Example(value='2059 micromole per kilogram', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter, milligram per liter, parts per million" . -MIXS:0000435 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "density" ; dcterms:title "density" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "density" ; skos:definition "Density of the sample, which is its mass per unit volume (aka volumetric mass density)" ; - skos:exactMatch MIXS:0000435 ; + skos:exactMatch ; linkml:examples "Example(value='1000 kilogram per cubic meter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "gram per cubic meter, gram per cubic centimeter" . -MIXS:0000436 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "diss_carb_dioxide" ; dcterms:title "dissolved carbon dioxide" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "dissolved carbon dioxide" ; skos:definition "Concentration of dissolved carbon dioxide in the sample or liquid portion of the sample" ; - skos:exactMatch MIXS:0000436 ; + skos:exactMatch ; linkml:examples "Example(value='5 milligram per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter, milligram per liter" . -MIXS:0000438 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "diss_oxygen_fluid" ; dcterms:title "dissolved oxygen in fluids" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "dissolved oxygen in fluids" ; skos:definition "Concentration of dissolved oxygen in the oil field produced fluids as it contributes to oxgen-corrosion and microbial activity (e.g. Mic)." ; - skos:exactMatch MIXS:0000438 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per kilogram, milligram per liter" . -MIXS:0000452 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "prod_rate" ; dcterms:title "production rate" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "production rate" ; skos:definition "Oil and/or gas production rates per well (e.g. 524 m3 / day)" ; - skos:exactMatch MIXS:0000452 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "cubic meter per day" . -MIXS:0000453 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "water_prod_rate" ; dcterms:title "water production rate" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "water production rate" ; skos:definition "Water production rates per well (e.g. 987 m3 / day)" ; - skos:exactMatch MIXS:0000453 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "cubic meter per day" . -MIXS:0000454 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "water_cut" ; dcterms:title "water cut" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "water cut" ; skos:definition "Current amount of water (%) in a produced fluid stream; or the average of the combined streams" ; - skos:exactMatch MIXS:0000454 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "percent" . -MIXS:0000455 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "iwf" ; dcterms:title "injection water fraction" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "injection water fraction" ; skos:definition "Proportion of the produced fluids derived from injected water at the time of sampling. (e.g. 87%)" ; - skos:exactMatch MIXS:0000455 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "percent" . -MIXS:0000456 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "biocide_admin_method" ; dcterms:title "biocide administration method" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "biocide administration method" ; skos:definition "Method of biocide administration (dose, frequency, duration, time elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3 days)" ; - skos:exactMatch MIXS:0000456 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value;frequency;duration;duration" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000457 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "chem_treat_method" ; dcterms:title "chemical treatment method" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "chemical treatment method" ; skos:definition "Method of chemical administration(dose, frequency, duration, time elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1 hr; 0 days)" ; - skos:exactMatch MIXS:0000457 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value;frequency;duration;duration" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000463 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_preserv" ; dcterms:title "preservative added to sample" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "preservative added to sample" ; skos:definition "Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde, etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml)" ; - skos:exactMatch MIXS:0000463 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "name;measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milliliter" . -MIXS:0000490 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "alkyl_diethers" ; dcterms:title "alkyl diethers" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "alkyl diethers" ; skos:definition "Concentration of alkyl diethers" ; - skos:exactMatch MIXS:0000490 ; + skos:exactMatch ; linkml:examples "Example(value='0.005 mole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "mole per liter" . -MIXS:0000498 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "mean_frict_vel" ; dcterms:title "mean friction velocity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "mean friction velocity" ; skos:definition "Measurement of mean friction velocity" ; - skos:exactMatch MIXS:0000498 ; + skos:exactMatch ; linkml:examples "Example(value='0.5 meter per second', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "meter per second" . -MIXS:0000502 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "mean_peak_frict_vel" ; dcterms:title "mean peak friction velocity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "mean peak friction velocity" ; skos:definition "Measurement of mean peak friction velocity" ; - skos:exactMatch MIXS:0000502 ; + skos:exactMatch ; linkml:examples "Example(value='1 meter per second', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "meter per second" . -MIXS:0000503 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "n_alkanes" ; dcterms:title "n-alkanes" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "n-alkanes" ; skos:definition "Concentration of n-alkanes; can include multiple n-alkanes" ; - skos:exactMatch MIXS:0000503 ; + skos:exactMatch ; linkml:examples "Example(value='n-hexadecane;100 milligram per liter', description=None)" ; nmdc:expected_value "n-alkane name;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "micromole per liter" . -MIXS:0000504 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "nitro" ; dcterms:title "nitrogen" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "nitrogen" ; skos:definition "Concentration of nitrogen (total)" ; - skos:exactMatch MIXS:0000504 ; + skos:exactMatch ; linkml:examples "Example(value='4.2 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter" . -MIXS:0000505 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "phosphate" ; dcterms:title "phosphate" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "phosphate" ; skos:definition "Concentration of phosphate" ; - skos:exactMatch MIXS:0000505 ; + skos:exactMatch ; linkml:examples "Example(value='0.7 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter" . -MIXS:0000508 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "org_carb" ; dcterms:title "organic carbon" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "organic carbon" ; skos:definition "Concentration of organic carbon" ; - skos:exactMatch MIXS:0000508 ; + skos:exactMatch ; linkml:examples "Example(value='1.5 microgram per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter" . -MIXS:0000515 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "part_org_carb" ; dcterms:title "particulate organic carbon" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "particulate organic carbon" ; skos:definition "Concentration of particulate organic carbon" ; - skos:exactMatch MIXS:0000515 ; + skos:exactMatch ; linkml:examples "Example(value='1.92 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter" . -MIXS:0000516 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "petroleum_hydrocarb" ; dcterms:title "petroleum hydrocarbon" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "petroleum hydrocarbon" ; skos:definition "Concentration of petroleum hydrocarbon" ; - skos:exactMatch MIXS:0000516 ; + skos:exactMatch ; linkml:examples "Example(value='0.05 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter" . -MIXS:0000525 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tot_carb" ; dcterms:title "total carbon" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "total carbon" ; skos:definition "Total carbon content" ; - skos:exactMatch MIXS:0000525 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter" . -MIXS:0000530 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tot_nitro_content" ; dcterms:title "total nitrogen content" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "total nitrogen content" ; skos:definition "Total nitrogen content of the sample" ; - skos:exactMatch MIXS:0000530 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter, micromole per liter, milligram per liter" . -MIXS:0000533 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tot_org_carb" ; dcterms:title "total organic carbon" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "total organic carbon" ; skos:definition "Definition for soil: total organic carbon content of the soil, definition otherwise: total organic carbon content" ; - skos:exactMatch MIXS:0000533 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "gram Carbon per kilogram sample material" . -MIXS:0000551 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "air_temp_regm" ; dcterms:title "air temperature regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "air temperature regimen" ; skos:definition "Information about treatment involving an exposure to varying temperatures; should include the temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include different temperature regimens" ; - skos:exactMatch MIXS:0000551 ; + skos:exactMatch ; linkml:examples "Example(value='25 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "temperature value;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "meter" . -MIXS:0000553 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "antibiotic_regm" ; dcterms:title "antibiotic regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "antibiotic regimen" ; skos:definition "Information about treatment involving antibiotic administration; should include the name of antibiotic, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple antibiotic regimens" ; - skos:exactMatch MIXS:0000553 ; + skos:exactMatch ; linkml:examples "Example(value='penicillin;5 milligram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "antibiotic name;antibiotic amount;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "milligram" . -MIXS:0000555 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "chem_mutagen" ; dcterms:title "chemical mutagen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "chemical mutagen" ; skos:definition "Treatment involving use of mutagens; should include the name of mutagen, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mutagen regimens" ; - skos:exactMatch MIXS:0000555 ; + skos:exactMatch ; linkml:examples "Example(value='nitrous acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "mutagen name;mutagen amount;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000556 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "fertilizer_regm" ; dcterms:title "fertilizer regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "fertilizer regimen" ; skos:definition "Information about treatment involving the use of fertilizers; should include the name of fertilizer, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fertilizer regimens" ; - skos:exactMatch MIXS:0000556 ; + skos:exactMatch ; linkml:examples "Example(value='urea;0.6 milligram per liter;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "fertilizer name;fertilizer amount;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram, mole per liter, milligram per liter" . -MIXS:0000557 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "fungicide_regm" ; dcterms:title "fungicide regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "fungicide regimen" ; skos:definition "Information about treatment involving use of fungicides; should include the name of fungicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fungicide regimens" ; - skos:exactMatch MIXS:0000557 ; + skos:exactMatch ; linkml:examples "Example(value='bifonazole;1 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "fungicide name;fungicide amount;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram, mole per liter, milligram per liter" . -MIXS:0000558 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "gaseous_environment" ; dcterms:title "gaseous environment" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "gaseous environment" ; skos:definition "Use of conditions with differing gaseous environments; should include the name of gaseous compound, amount administered, treatment duration, interval and total experimental duration; can include multiple gaseous environment regimens" ; - skos:exactMatch MIXS:0000558 ; + skos:exactMatch ; linkml:examples "Example(value='nitric oxide;0.5 micromole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "gaseous compound name;gaseous compound amount;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "micromole per liter" . -MIXS:0000559 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "gravity" ; dcterms:title "gravity" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "gravity" ; skos:definition "Information about treatment involving use of gravity factor to study various types of responses in presence, absence or modified levels of gravity; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple treatments" ; - skos:exactMatch MIXS:0000559 ; + skos:exactMatch ; linkml:examples "Example(value='12 g;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "gravity factor value;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "meter per square second, g" . -MIXS:0000560 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "growth_hormone_regm" ; dcterms:title "growth hormone regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "growth hormone regimen" ; skos:definition "Information about treatment involving use of growth hormones; should include the name of growth hormone, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple growth hormone regimens" ; - skos:exactMatch MIXS:0000560 ; + skos:exactMatch ; linkml:examples "Example(value='abscisic acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "growth hormone name;growth hormone amount;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram, mole per liter, milligram per liter" . -MIXS:0000561 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "herbicide_regm" ; dcterms:title "herbicide regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "herbicide regimen" ; skos:definition "Information about treatment involving use of herbicides; information about treatment involving use of growth hormones; should include the name of herbicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; - skos:exactMatch MIXS:0000561 ; + skos:exactMatch ; linkml:examples "Example(value='atrazine;10 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "herbicide name;herbicide amount;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram, mole per liter, milligram per liter" . -MIXS:0000567 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_wet_mass" ; dcterms:title "host wet mass" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host wet mass" ; skos:definition "Measurement of wet mass" ; - skos:exactMatch MIXS:0000567 ; + skos:exactMatch ; linkml:examples "Example(value='1500 gram', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "kilogram, gram" . -MIXS:0000568 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "humidity_regm" ; dcterms:title "humidity regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "humidity regimen" ; skos:definition "Information about treatment involving an exposure to varying degree of humidity; information about treatment involving use of growth hormones; should include amount of humidity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; - skos:exactMatch MIXS:0000568 ; + skos:exactMatch ; linkml:examples "Example(value='25 gram per cubic meter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "humidity value;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram per cubic meter" . -MIXS:0000569 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "light_regm" ; dcterms:title "light regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "light regimen" ; skos:definition "Information about treatment(s) involving exposure to light, including both light intensity and quality." ; - skos:exactMatch MIXS:0000569 ; + skos:exactMatch ; linkml:examples "Example(value='incandescant light;10 lux;450 nanometer', description=None)" ; nmdc:expected_value "exposure type;light intensity;light quality" ; nmdc:occurrence "1" ; nmdc:preferred_unit "lux; micrometer, nanometer, angstrom" . -MIXS:0000570 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "mineral_nutr_regm" ; dcterms:title "mineral nutrient regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "mineral nutrient regimen" ; skos:definition "Information about treatment involving the use of mineral supplements; should include the name of mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mineral nutrient regimens" ; - skos:exactMatch MIXS:0000570 ; + skos:exactMatch ; linkml:examples "Example(value='potassium;15 gram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "mineral nutrient name;mineral nutrient amount;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram, mole per liter, milligram per liter" . -MIXS:0000571 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "non_min_nutr_regm" ; dcterms:title "non-mineral nutrient regimen" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "non-mineral nutrient regimen" ; skos:definition "Information about treatment involving the exposure of plant to non-mineral nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple non-mineral nutrient regimens" ; - skos:exactMatch MIXS:0000571 ; + skos:exactMatch ; linkml:examples "Example(value='carbon dioxide;10 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "non-mineral nutrient name;non-mineral nutrient amount;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram, mole per liter, milligram per liter" . -MIXS:0000573 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "pesticide_regm" ; dcterms:title "pesticide regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "pesticide regimen" ; skos:definition "Information about treatment involving use of insecticides; should include the name of pesticide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple pesticide regimens" ; - skos:exactMatch MIXS:0000573 ; + skos:exactMatch ; linkml:examples "Example(value='pyrethrum;0.6 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "pesticide name;pesticide amount;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram, mole per liter, milligram per liter" . -MIXS:0000575 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "radiation_regm" ; dcterms:title "radiation regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "radiation regimen" ; skos:definition "Information about treatment involving exposure of plant or a plant part to a particular radiation regimen; should include the radiation type, amount or intensity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple radiation regimens" ; - skos:exactMatch MIXS:0000575 ; + skos:exactMatch ; linkml:examples "Example(value='gamma radiation;60 gray;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "radiation type name;radiation amount;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "rad, gray" . -MIXS:0000576 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "rainfall_regm" ; dcterms:title "rainfall regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "rainfall regimen" ; skos:definition "Information about treatment involving an exposure to a given amount of rainfall, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; - skos:exactMatch MIXS:0000576 ; + skos:exactMatch ; linkml:examples "Example(value='15 millimeter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "measurement value;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "millimeter" . -MIXS:0000577 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "root_med_carbon" ; dcterms:title "rooting medium carbon" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "rooting medium carbon" ; skos:definition "Source of organic carbon in the culture rooting medium; e.g. sucrose." ; - skos:exactMatch MIXS:0000577 ; + skos:exactMatch ; linkml:examples "Example(value='sucrose', description=None)" ; nmdc:expected_value "carbon source name;measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000578 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "root_med_macronutr" ; dcterms:title "rooting medium macronutrients" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "rooting medium macronutrients" ; skos:definition "Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S); e.g. KH2PO4 (170¬†mg/L)." ; - skos:exactMatch MIXS:0000578 ; + skos:exactMatch ; linkml:examples "Example(value='KH2PO4;170¬†milligram per liter', description=None)" ; nmdc:expected_value "macronutrient name;measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000579 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "root_med_micronutr" ; dcterms:title "rooting medium micronutrients" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "rooting medium micronutrients" ; skos:definition "Measurement of the culture rooting medium micronutrients (Fe, Mn, Zn, B, Cu, Mo); e.g. H3BO3 (6.2¬†mg/L)." ; - skos:exactMatch MIXS:0000579 ; + skos:exactMatch ; linkml:examples "Example(value='H3BO3;6.2¬†milligram per liter', description=None)" ; nmdc:expected_value "micronutrient name;measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000580 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "root_med_suppl" ; dcterms:title "rooting medium organic supplements" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "rooting medium organic supplements" ; skos:definition "Organic supplements of the culture rooting medium, such as vitamins, amino acids, organic acids, antibiotics activated charcoal; e.g. nicotinic acid (0.5¬†mg/L)." ; - skos:exactMatch MIXS:0000580 ; + skos:exactMatch ; linkml:examples "Example(value='nicotinic acid;0.5 milligram per liter', description=None)" ; nmdc:expected_value "supplement name;measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000581 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "root_med_regl" ; dcterms:title "rooting medium regulators" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "rooting medium regulators" ; skos:definition "Growth regulators in the culture rooting medium such as cytokinins, auxins, gybberellins, abscisic acid; e.g. 0.5¬†mg/L NAA." ; - skos:exactMatch MIXS:0000581 ; + skos:exactMatch ; linkml:examples "Example(value='abscisic acid;0.75 milligram per liter', description=None)" ; nmdc:expected_value "regulator name;measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000582 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "salt_regm" ; dcterms:title "salt regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "salt regimen" ; skos:definition "Information about treatment involving use of salts as supplement to liquid and soil growth media; should include the name of salt, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple salt regimens" ; - skos:exactMatch MIXS:0000582 ; + skos:exactMatch ; linkml:examples "Example(value='NaCl;5 gram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "salt name;salt amount;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram, microgram, mole per liter, gram per liter" . -MIXS:0000590 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "water_temp_regm" ; dcterms:title "water temperature regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "water temperature regimen" ; skos:definition "Information about treatment involving an exposure to water with varying degree of temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; - skos:exactMatch MIXS:0000590 ; + skos:exactMatch ; linkml:examples "Example(value='15 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "measurement value;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "degree Celsius" . -MIXS:0000591 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "watering_regm" ; dcterms:title "watering regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "watering regimen" ; skos:definition "Information about treatment involving an exposure to watering frequencies, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; - skos:exactMatch MIXS:0000591 ; + skos:exactMatch ; linkml:examples "Example(value='1 liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "measurement value;treatment interval and duration" ; nmdc:occurrence "m" ; nmdc:preferred_unit "milliliter, liter" . -MIXS:0000607 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "al_sat" ; dcterms:title "extreme_unusual_properties/Al saturation" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "extreme_unusual_properties/Al saturation" ; skos:definition "Aluminum saturation (esp. For tropical soils)" ; - skos:exactMatch MIXS:0000607 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "percentage" . -MIXS:0000634 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tot_depth_water_col" ; dcterms:title "total depth of water column" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "total depth of water column" ; skos:definition "Measurement of total depth of water column" ; - skos:exactMatch MIXS:0000634 ; + skos:exactMatch ; linkml:examples "Example(value='500 meter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "meter" . -MIXS:0000639 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "agrochem_addition" ; dcterms:title "history/agrochemical additions" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "history/agrochemical additions" ; skos:definition "Addition of fertilizers, pesticides, etc. - amount and time of applications" ; - skos:exactMatch MIXS:0000639 ; + skos:exactMatch ; linkml:examples "Example(value='roundup;5 milligram per liter;2018-06-21', description=None)" ; nmdc:expected_value "agrochemical name;agrochemical amount;timestamp" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram, mole per liter, milligram per liter" . -MIXS:0000642 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "annual_temp" ; dcterms:title "mean annual temperature" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "mean annual temperature" ; skos:definition "Mean annual temperature" ; - skos:exactMatch MIXS:0000642 ; + skos:exactMatch ; linkml:examples "Example(value='12.5 degree Celsius', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "degree Celsius" . -MIXS:0000643 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "season_temp" ; dcterms:title "mean seasonal temperature" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "mean seasonal temperature" ; skos:definition "Mean seasonal temperature" ; - skos:exactMatch MIXS:0000643 ; + skos:exactMatch ; linkml:examples "Example(value='18 degree Celsius', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "degree Celsius" . -MIXS:0000644 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "annual_precpt" ; dcterms:title "mean annual precipitation" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "mean annual precipitation" ; skos:definition "The average of all annual precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps." ; - skos:exactMatch MIXS:0000644 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "millimeter" . -MIXS:0000645 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "season_precpt" ; dcterms:title "mean seasonal precipitation" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "mean seasonal precipitation" ; skos:definition "The average of all seasonal precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps." ; - skos:exactMatch MIXS:0000645 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "millimeter" . -MIXS:0000646 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "slope_gradient" ; dcterms:title "slope gradient" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "slope gradient" ; skos:definition "Commonly called 'slope'. The angle between ground surface and a horizontal line (in percent). This is the direction that overland water would flow. This measure is usually taken with a hand level meter or clinometer" ; - skos:exactMatch MIXS:0000646 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "percentage" . -MIXS:0000647 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "slope_aspect" ; dcterms:title "slope aspect" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "slope aspect" ; skos:definition "The direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees); e.g., nw or 315 degrees. This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration." ; - skos:exactMatch MIXS:0000647 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "degree" . -MIXS:0000650 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "microbial_biomass" ; dcterms:title "microbial biomass" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "microbial biomass" ; skos:definition "The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer. If you keep this, you would need to have correction factors used for conversion to the final units" ; - skos:exactMatch MIXS:0000650 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "ton, kilogram, gram per kilogram soil" . -MIXS:0000652 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "heavy_metals" ; dcterms:title "extreme_unusual_properties/heavy metals" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "extreme_unusual_properties/heavy metals" ; skos:definition "Heavy metals present in the sequenced sample and their concentrations. For multiple heavy metals and concentrations, add multiple copies of this field." ; - skos:exactMatch MIXS:0000652 ; + skos:exactMatch ; linkml:examples "Example(value='mercury;0.09 micrograms per gram', description=None)" ; nmdc:expected_value "heavy metal name;measurement value unit" ; nmdc:occurrence "m" ; nmdc:preferred_unit "microgram per gram" . -MIXS:0000653 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "biochem_oxygen_dem" ; dcterms:title "biochemical oxygen demand" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "biochemical oxygen demand" ; skos:definition "Amount of dissolved oxygen needed by aerobic biological organisms in a body of water to break down organic material present in a given water sample at certain temperature over a specific time period" ; - skos:exactMatch MIXS:0000653 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000656 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "chem_oxygen_dem" ; dcterms:title "chemical oxygen demand" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "chemical oxygen demand" ; skos:definition "A measure of the capacity of water to consume oxygen during the decomposition of organic matter and the oxidation of inorganic chemicals such as ammonia and nitrite" ; - skos:exactMatch MIXS:0000656 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000657 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "efficiency_percent" ; dcterms:title "efficiency percent" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "efficiency percent" ; skos:definition "Percentage of volatile solids removed from the anaerobic digestor" ; - skos:exactMatch MIXS:0000657 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter" . -MIXS:0000660 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "emulsions" ; dcterms:title "emulsions" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "emulsions" ; skos:definition "Amount or concentration of substances such as paints, adhesives, mayonnaise, hair colorants, emulsified oils, etc.; can include multiple emulsion types" ; - skos:exactMatch MIXS:0000660 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "emulsion name;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram per liter" . -MIXS:0000661 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "gaseous_substances" ; dcterms:title "gaseous substances" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "gaseous substances" ; skos:definition "Amount or concentration of substances such as hydrogen sulfide, carbon dioxide, methane, etc.; can include multiple substances" ; - skos:exactMatch MIXS:0000661 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "gaseous substance name;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "micromole per liter" . -MIXS:0000662 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "indust_eff_percent" ; dcterms:title "industrial effluent percent" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "industrial effluent percent" ; skos:definition "Percentage of industrial effluents received by wastewater treatment plant" ; - skos:exactMatch MIXS:0000662 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "percentage" . -MIXS:0000664 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "inorg_particles" ; dcterms:title "inorganic particles" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "inorganic particles" ; skos:definition "Concentration of particles such as sand, grit, metal particles, ceramics, etc.; can include multiple particles" ; - skos:exactMatch MIXS:0000664 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "inorganic particle name;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "mole per liter, milligram per liter" . -MIXS:0000665 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "org_particles" ; dcterms:title "organic particles" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "organic particles" ; skos:definition "Concentration of particles such as faeces, hairs, food, vomit, paper fibers, plant material, humus, etc." ; - skos:exactMatch MIXS:0000665 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "particle name;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram per liter" . -MIXS:0000669 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "sludge_retent_time" ; dcterms:title "sludge retention time" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sludge retention time" ; skos:definition "The time activated sludge remains in reactor" ; - skos:exactMatch MIXS:0000669 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "hours" . -MIXS:0000672 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "soluble_inorg_mat" ; dcterms:title "soluble inorganic material" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "soluble inorganic material" ; skos:definition "Concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc." ; - skos:exactMatch MIXS:0000672 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "soluble inorganic material name;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram, microgram, mole per liter, gram per liter, parts per million" . -MIXS:0000673 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "soluble_org_mat" ; dcterms:title "soluble organic material" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "soluble organic material" ; skos:definition "Concentration of substances such as urea, fruit sugars, soluble proteins, drugs, pharmaceuticals, etc." ; - skos:exactMatch MIXS:0000673 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "soluble organic material name;measurement value" ; nmdc:occurrence "m" ; nmdc:preferred_unit "gram, microgram, mole per liter, gram per liter, parts per million" . -MIXS:0000683 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "bac_prod" ; dcterms:title "bacterial production" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "bacterial production" ; skos:definition "Bacterial production in the water column measured by isotope uptake" ; - skos:exactMatch MIXS:0000683 ; + skos:exactMatch ; linkml:examples "Example(value='5 milligram per cubic meter per day', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per cubic meter per day" . -MIXS:0000684 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "bac_resp" ; dcterms:title "bacterial respiration" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "bacterial respiration" ; skos:definition "Measurement of bacterial respiration in the water column" ; - skos:exactMatch MIXS:0000684 ; + skos:exactMatch ; linkml:examples "Example(value='300 micromole oxygen per liter per hour', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per cubic meter per day, micromole oxygen per liter per hour" . -MIXS:0000689 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tot_phosphate" ; dcterms:title "total phosphate" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "total phosphate" ; skos:definition "Total amount or concentration of phosphate" ; - skos:exactMatch MIXS:0000689 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter, micromole per liter" . -MIXS:0000692 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "conduc" ; dcterms:title "conductivity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "conductivity" ; skos:definition "Electrical conductivity of water" ; - skos:exactMatch MIXS:0000692 ; + skos:exactMatch ; linkml:examples "Example(value='10 milliSiemens per centimeter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milliSiemens per centimeter" . -MIXS:0000698 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "diss_inorg_nitro" ; dcterms:title "dissolved inorganic nitrogen" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "dissolved inorganic nitrogen" ; skos:definition "Concentration of dissolved inorganic nitrogen" ; - skos:exactMatch MIXS:0000698 ; + skos:exactMatch ; linkml:examples "Example(value='761 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter, micromole per liter" . -MIXS:0000703 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "down_par" ; dcterms:title "downward PAR" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "downward PAR" ; skos:definition "Visible waveband radiance and irradiance measurements in the water column" ; - skos:exactMatch MIXS:0000703 ; + skos:exactMatch ; linkml:examples "Example(value='28.71 microEinstein per square meter per second', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microEinstein per square meter per second, microEinstein per square centimeter per second" . -MIXS:0000704 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "fluor" ; dcterms:title "fluorescence" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "fluorescence" ; skos:definition "Raw or converted fluorescence of water" ; - skos:exactMatch MIXS:0000704 ; + skos:exactMatch ; linkml:examples "Example(value='2.5 volts', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram chlorophyll a per cubic meter, volts" . -MIXS:0000706 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "light_intensity" ; dcterms:title "light intensity" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "light intensity" ; skos:definition "Measurement of light intensity" ; - skos:exactMatch MIXS:0000706 ; + skos:exactMatch ; linkml:examples "Example(value='0.3 lux', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "lux" . -MIXS:0000719 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "part_org_nitro" ; dcterms:title "particulate organic nitrogen" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "particulate organic nitrogen" ; skos:definition "Concentration of particulate organic nitrogen" ; - skos:exactMatch MIXS:0000719 ; + skos:exactMatch ; linkml:examples "Example(value='0.3 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter, micromole per liter" . -MIXS:0000721 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "built_struc_type" ; dcterms:title "built structure type" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "built structure type" ; skos:definition "A physical structure that is a body or assemblage of bodies in space to form a system capable of supporting loads" ; - skos:exactMatch MIXS:0000721 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "free text" ; nmdc:occurrence "1" . -MIXS:0000725 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "photon_flux" ; dcterms:title "photon flux" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "photon flux" ; skos:definition "Measurement of photon flux" ; - skos:exactMatch MIXS:0000725 ; + skos:exactMatch ; linkml:examples "Example(value='3.926 micromole photons per second per square meter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "number of photons per second per unit area" . -MIXS:0000728 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "primary_prod" ; dcterms:title "primary production" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "primary production" ; skos:definition "Measurement of primary production, generally measured as isotope uptake" ; - skos:exactMatch MIXS:0000728 ; + skos:exactMatch ; linkml:examples "Example(value='100 milligram per cubic meter per day', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per cubic meter per day, gram per square meter per day" . -MIXS:0000735 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "size_frac_low" ; dcterms:title "size-fraction lower threshold" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "size-fraction lower threshold" ; skos:definition "Refers to the mesh/pore size used to pre-filter/pre-sort the sample. Materials larger than the size threshold are excluded from the sample" ; - skos:exactMatch MIXS:0000735 ; + skos:exactMatch ; linkml:examples "Example(value='0.2 micrometer', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micrometer" . -MIXS:0000736 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "size_frac_up" ; dcterms:title "size-fraction upper threshold" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "size-fraction upper threshold" ; skos:definition "Refers to the mesh/pore size used to retain the sample. Materials smaller than the size threshold are excluded from the sample" ; - skos:exactMatch MIXS:0000736 ; + skos:exactMatch ; linkml:examples "Example(value='20 micrometer', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micrometer" . -MIXS:0000738 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "soluble_react_phosp" ; dcterms:title "soluble reactive phosphorus" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "soluble reactive phosphorus" ; skos:definition "Concentration of soluble reactive phosphorus" ; - skos:exactMatch MIXS:0000738 ; + skos:exactMatch ; linkml:examples "Example(value='0.1 milligram per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "micromole per liter, milligram per liter, parts per million" . -MIXS:0000741 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "suspend_part_matter" ; dcterms:title "suspended particulate matter" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "suspended particulate matter" ; skos:definition "Concentration of suspended particulate matter" ; - skos:exactMatch MIXS:0000741 ; + skos:exactMatch ; linkml:examples "Example(value='0.5 milligram per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "milligram per liter" . -MIXS:0000744 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tot_diss_nitro" ; dcterms:title "total dissolved nitrogen" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "total dissolved nitrogen" ; skos:definition "Total dissolved nitrogen concentration, reported as nitrogen, measured by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen" ; - skos:exactMatch MIXS:0000744 ; + skos:exactMatch ; linkml:examples "Example(value='40 microgram per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter" . -MIXS:0000745 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tot_inorg_nitro" ; dcterms:title "total inorganic nitrogen" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "total inorganic nitrogen" ; skos:definition "Total inorganic nitrogen content" ; - skos:exactMatch MIXS:0000745 ; + skos:exactMatch ; linkml:examples "Example(value='40 microgram per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter" . -MIXS:0000747 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tot_part_carb" ; dcterms:title "total particulate carbon" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "total particulate carbon" ; skos:definition "Total particulate carbon content" ; - skos:exactMatch MIXS:0000747 ; + skos:exactMatch ; linkml:examples "Example(value='35 micromole per liter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" ; nmdc:preferred_unit "microgram per liter, micromole per liter" . -MIXS:0000750 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tidal_stage" ; dcterms:title "tidal stage" ; - rdfs:range MIXS:TidalStageEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "tidal stage" ; skos:definition "Stage of tide" ; - skos:exactMatch MIXS:0000750 ; + skos:exactMatch ; linkml:examples "Example(value='high tide', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000751 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "chem_administration" ; dcterms:title "chemical administration" ; rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "chemical administration" ; skos:definition "List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology (chebi) (v 163), http://purl.bioontology.org/ontology/chebi" ; - skos:exactMatch MIXS:0000751 ; + skos:exactMatch ; linkml:examples "Example(value='agar [CHEBI:2509];2018-05-11T20:00Z', description=None)" ; nmdc:expected_value "CHEBI;timestamp" ; nmdc:occurrence "m" . -MIXS:0000752 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "misc_param" ; dcterms:title "miscellaneous parameter" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "miscellaneous parameter" ; skos:definition "Any other measurement performed or parameter collected, that is not listed here" ; - skos:exactMatch MIXS:0000752 ; + skos:exactMatch ; linkml:examples "Example(value='Bicarbonate ion concentration;2075 micromole per kilogram', description=None)" ; nmdc:expected_value "parameter name;measurement value" ; nmdc:occurrence "m" . -MIXS:0000753 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "oxy_stat_samp" ; dcterms:title "oxygenation status of sample" ; - rdfs:range MIXS:OxyStatSampEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "oxygenation status of sample" ; skos:definition "Oxygenation status of sample" ; - skos:exactMatch MIXS:0000753 ; + skos:exactMatch ; linkml:examples "Example(value='aerobic', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000754 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "perturbation" ; dcterms:title "perturbation" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "perturbation" ; skos:definition "Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time of the entire perturbation period; can include multiple perturbation types" ; - skos:exactMatch MIXS:0000754 ; + skos:exactMatch ; linkml:examples "Example(value='antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M', description=None)" ; nmdc:expected_value "perturbation type name;perturbation interval and duration" ; nmdc:occurrence "m" . -MIXS:0000755 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_store_loc" ; dcterms:title "sample storage location" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sample storage location" ; skos:definition "Location at which sample was stored, usually name of a specific freezer/room" ; - skos:exactMatch MIXS:0000755 ; + skos:exactMatch ; linkml:examples "Example(value='Freezer no:5', description=None)" ; nmdc:expected_value "location name" ; nmdc:occurrence "1" . -MIXS:0000756 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ventilation_type" ; dcterms:title "ventilation type" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "ventilation type" ; skos:definition "Ventilation system used in the sampled premises" ; - skos:exactMatch MIXS:0000756 ; + skos:exactMatch ; linkml:examples "Example(value='Operable windows', description=None)" ; nmdc:expected_value "ventilation type name" ; nmdc:occurrence "1" . -MIXS:0000757 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "wind_direction" ; dcterms:title "wind direction" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "wind direction" ; skos:definition "Wind direction is the direction from which a wind originates" ; - skos:exactMatch MIXS:0000757 ; + skos:exactMatch ; linkml:examples "Example(value='Northwest', description=None)" ; nmdc:expected_value "wind direction name" ; nmdc:occurrence "1" . -MIXS:0000758 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "surf_material" ; dcterms:title "surface material" ; - rdfs:range MIXS:SurfMaterialEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "surface material" ; skos:definition "Surface materials at the point of sampling" ; - skos:exactMatch MIXS:0000758 ; + skos:exactMatch ; linkml:examples "Example(value='wood', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000759 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "surf_air_cont" ; dcterms:title "surface-air contaminant" ; - rdfs:range MIXS:SurfAirContEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "surface-air contaminant" ; skos:definition "Contaminant identified on surface" ; - skos:exactMatch MIXS:0000759 ; + skos:exactMatch ; linkml:examples "Example(value='radon', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "m" . -MIXS:0000760 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "surf_moisture_ph" ; dcterms:title "surface moisture pH" ; rdfs:range linkml:Double ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "surface moisture pH" ; skos:definition "ph measurement of surface" ; - skos:exactMatch MIXS:0000760 ; + skos:exactMatch ; linkml:examples "Example(value='7', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" . -MIXS:0000761 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "build_occup_type" ; dcterms:title "building occupancy type" ; - rdfs:range MIXS:BuildOccupTypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "building occupancy type" ; skos:definition "The primary function for which a building or discrete part of a building is intended to be used" ; - skos:exactMatch MIXS:0000761 ; + skos:exactMatch ; linkml:examples "Example(value='market', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "m" . -MIXS:0000763 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "indoor_space" ; dcterms:title "indoor space" ; - rdfs:range MIXS:IndoorSpaceEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "indoor space" ; skos:definition "A distinguishable space within a structure, the purpose for which discrete areas of a building is used" ; - skos:exactMatch MIXS:0000763 ; + skos:exactMatch ; linkml:examples "Example(value='foyer', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000764 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "indoor_surf" ; dcterms:title "indoor surface" ; - rdfs:range MIXS:IndoorSurfEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "indoor surface" ; skos:definition "Type of indoor surface" ; - skos:exactMatch MIXS:0000764 ; + skos:exactMatch ; linkml:examples "Example(value='wall', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000765 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "filter_type" ; dcterms:title "filter type" ; - rdfs:range MIXS:FilterTypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "filter type" ; skos:definition "A device which removes solid particulates or airborne molecular contaminants" ; - skos:exactMatch MIXS:0000765 ; + skos:exactMatch ; linkml:examples "Example(value='HEPA', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "m" . -MIXS:0000766 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "heat_cool_type" ; dcterms:title "heating and cooling system type" ; - rdfs:range MIXS:HeatCoolTypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "heating and cooling system type" ; skos:definition "Methods of conditioning or heating a room or building" ; - skos:exactMatch MIXS:0000766 ; + skos:exactMatch ; linkml:examples "Example(value='heat pump', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "m" . -MIXS:0000767 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "substructure_type" ; dcterms:title "substructure type" ; - rdfs:range MIXS:SubstructureTypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "substructure type" ; skos:definition "The substructure or under building is that largely hidden section of the building which is built off the foundations to the ground floor level" ; - skos:exactMatch MIXS:0000767 ; + skos:exactMatch ; linkml:examples "Example(value='basement', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "m" . -MIXS:0000768 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "building_setting" ; dcterms:title "building setting" ; - rdfs:range MIXS:BuildingSettingEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "building setting" ; skos:definition "A location (geography) where a building is set" ; - skos:exactMatch MIXS:0000768 ; + skos:exactMatch ; linkml:examples "Example(value='rural', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000769 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "light_type" ; dcterms:title "light type" ; - rdfs:range MIXS:LightTypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "light type" ; skos:definition "Application of light to achieve some practical or aesthetic effect. Lighting includes the use of both artificial light sources such as lamps and light fixtures, as well as natural illumination by capturing daylight. Can also include absence of light" ; - skos:exactMatch MIXS:0000769 ; + skos:exactMatch ; linkml:examples "Example(value='desk lamp', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "m" . -MIXS:0000770 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "space_typ_state" ; dcterms:title "space typical state" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "space typical state" ; skos:definition "Customary or normal state of the space" ; - skos:exactMatch MIXS:0000770 ; + skos:exactMatch ; linkml:examples "Example(value='typically occupied', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000771 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "typ_occup_density" ; dcterms:title "typical occupant density" ; rdfs:range linkml:Double ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "typical occupant density" ; skos:definition "Customary or normal density of occupants" ; - skos:exactMatch MIXS:0000771 ; + skos:exactMatch ; linkml:examples "Example(value='25', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" . -MIXS:0000772 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "occup_samp" ; dcterms:title "occupancy at sampling" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "occupancy at sampling" ; skos:definition "Number of occupants present at time of sample within the given space" ; - skos:exactMatch MIXS:0000772 ; + skos:exactMatch ; linkml:examples "Example(value='10', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" . -MIXS:0000773 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "aero_struc" ; dcterms:title "aerospace structure" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "aerospace structure" ; skos:definition "Aerospace structures typically consist of thin plates with stiffeners for the external surfaces, bulkheads and frames to support the shape and fasteners such as welds, rivets, screws and bolts to hold the components together" ; - skos:exactMatch MIXS:0000773 ; + skos:exactMatch ; linkml:examples "Example(value='plane', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000774 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "arch_struc" ; dcterms:title "architectural structure" ; - rdfs:range MIXS:ArchStrucEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "architectural structure" ; skos:definition "An architectural structure is a human-made, free-standing, immobile outdoor construction" ; - skos:exactMatch MIXS:0000774 ; + skos:exactMatch ; linkml:examples "Example(value='shed', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000775 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "avg_occup" ; dcterms:title "average daily occupancy" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "average daily occupancy" ; skos:definition "Daily average occupancy of room. Indicate the number of person(s) daily occupying the sampling room." ; - skos:exactMatch MIXS:0000775 ; + skos:exactMatch ; linkml:examples "Example(value='2', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" . -MIXS:0000776 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "bathroom_count" ; dcterms:title "bathroom count" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "bathroom count" ; skos:definition "The number of bathrooms in the building" ; - skos:exactMatch MIXS:0000776 ; + skos:exactMatch ; linkml:examples "Example(value='1', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" . -MIXS:0000777 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "bedroom_count" ; dcterms:title "bedroom count" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "bedroom count" ; skos:definition "The number of bedrooms in the building" ; - skos:exactMatch MIXS:0000777 ; + skos:exactMatch ; linkml:examples "Example(value='2', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" . -MIXS:0000778 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "built_struc_set" ; dcterms:title "built structure setting" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "built structure setting" ; skos:definition "The characterization of the location of the built structure as high or low human density" ; - skos:exactMatch MIXS:0000778 ; + skos:exactMatch ; linkml:examples "Example(value='rural', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000779 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ceil_cond" ; dcterms:title "ceiling condition" ; - rdfs:range MIXS:CeilCondEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "ceiling condition" ; skos:definition "The physical condition of the ceiling at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas" ; - skos:exactMatch MIXS:0000779 ; + skos:exactMatch ; linkml:examples "Example(value='damaged', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000780 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ceil_finish_mat" ; dcterms:title "ceiling finish material" ; - rdfs:range MIXS:CeilFinishMatEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "ceiling finish material" ; skos:definition "The type of material used to finish a ceiling" ; - skos:exactMatch MIXS:0000780 ; + skos:exactMatch ; linkml:examples "Example(value='stucco', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000781 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ceil_water_mold" ; dcterms:title "ceiling signs of water/mold" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "ceiling signs of water/mold" ; skos:definition "Signs of the presence of mold or mildew on the ceiling" ; - skos:exactMatch MIXS:0000781 ; + skos:exactMatch ; linkml:examples "Example(value='presence of mold visible', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000782 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ceil_struc" ; dcterms:title "ceiling structure" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "ceiling structure" ; skos:definition "The construction format of the ceiling" ; - skos:exactMatch MIXS:0000782 ; + skos:exactMatch ; linkml:examples "Example(value='concrete', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000783 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ceil_texture" ; dcterms:title "ceiling texture" ; - rdfs:range MIXS:CeilTextureEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "ceiling texture" ; skos:definition "The feel, appearance, or consistency of a ceiling surface" ; - skos:exactMatch MIXS:0000783 ; + skos:exactMatch ; linkml:examples "Example(value='popcorn', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000784 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ceil_type" ; dcterms:title "ceiling type" ; - rdfs:range MIXS:CeilTypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "ceiling type" ; skos:definition "The type of ceiling according to the ceiling's appearance or construction" ; - skos:exactMatch MIXS:0000784 ; + skos:exactMatch ; linkml:examples "Example(value='coffered', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000785 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "cool_syst_id" ; dcterms:title "cooling system identifier" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "cooling system identifier" ; skos:definition "The cooling system identifier" ; - skos:exactMatch MIXS:0000785 ; + skos:exactMatch ; linkml:examples "Example(value='12345', description=None)" ; nmdc:expected_value "unique identifier" ; nmdc:occurrence "1" . -MIXS:0000786 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "date_last_rain" ; dcterms:title "date last rain" ; rdfs:range nmdc:TimestampValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "date last rain" ; skos:definition "The date of the last time it rained" ; - skos:exactMatch MIXS:0000786 ; + skos:exactMatch ; linkml:examples "Example(value='2018-05-11:T14:30Z', description=None)" ; nmdc:expected_value "timestamp" ; nmdc:occurrence "1" . -MIXS:0000787 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "build_docs" ; dcterms:title "design, construction, and operation documents" ; - rdfs:range MIXS:BuildDocsEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "design, construction, and operation documents" ; skos:definition "The building design, construction and operation documents" ; - skos:exactMatch MIXS:0000787 ; + skos:exactMatch ; linkml:examples "Example(value='maintenance plans', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000788 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "door_cond" ; dcterms:title "door condition" ; - rdfs:range MIXS:DoorCondEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "door condition" ; skos:definition "The phsical condition of the door" ; - skos:exactMatch MIXS:0000788 ; + skos:exactMatch ; linkml:examples "Example(value='new', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000789 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "door_direct" ; dcterms:title "door direction of opening" ; - rdfs:range MIXS:DoorDirectEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "door direction of opening" ; skos:definition "The direction the door opens" ; - skos:exactMatch MIXS:0000789 ; + skos:exactMatch ; linkml:examples "Example(value='inward', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000790 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "door_loc" ; dcterms:title "door location" ; - rdfs:range MIXS:DoorLocEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "door location" ; skos:definition "The relative location of the door in the room" ; - skos:exactMatch MIXS:0000790 ; + skos:exactMatch ; linkml:examples "Example(value='north', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000791 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "door_mat" ; dcterms:title "door material" ; - rdfs:range MIXS:DoorMatEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "door material" ; skos:definition "The material the door is composed of" ; - skos:exactMatch MIXS:0000791 ; + skos:exactMatch ; linkml:examples "Example(value='wood', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000792 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "door_move" ; dcterms:title "door movement" ; - rdfs:range MIXS:DoorMoveEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "door movement" ; skos:definition "The type of movement of the door" ; - skos:exactMatch MIXS:0000792 ; + skos:exactMatch ; linkml:examples "Example(value='swinging', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000793 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "door_water_mold" ; dcterms:title "door signs of water/mold" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "door signs of water/mold" ; skos:definition "Signs of the presence of mold or mildew on a door" ; - skos:exactMatch MIXS:0000793 ; + skos:exactMatch ; linkml:examples "Example(value='presence of mold visible', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000794 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "door_type" ; dcterms:title "door type" ; - rdfs:range MIXS:DoorTypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "door type" ; skos:definition "The type of door material" ; - skos:exactMatch MIXS:0000794 ; + skos:exactMatch ; linkml:examples "Example(value='wooden', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000795 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "door_comp_type" ; dcterms:title "door type, composite" ; - rdfs:range MIXS:DoorCompTypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "door type, composite" ; skos:definition "The composite type of the door" ; - skos:exactMatch MIXS:0000795 ; + skos:exactMatch ; linkml:examples "Example(value='revolving', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000796 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "door_type_metal" ; dcterms:title "door type, metal" ; - rdfs:range MIXS:DoorTypeMetalEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "door type, metal" ; skos:definition "The type of metal door" ; - skos:exactMatch MIXS:0000796 ; + skos:exactMatch ; linkml:examples "Example(value='hollow', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000797 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "door_type_wood" ; dcterms:title "door type, wood" ; - rdfs:range MIXS:DoorTypeWoodEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "door type, wood" ; skos:definition "The type of wood door" ; - skos:exactMatch MIXS:0000797 ; + skos:exactMatch ; linkml:examples "Example(value='battened', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000798 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "drawings" ; dcterms:title "drawings" ; - rdfs:range MIXS:DrawingsEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "drawings" ; skos:definition "The buildings architectural drawings; if design is chosen, indicate phase-conceptual, schematic, design development, and construction documents" ; - skos:exactMatch MIXS:0000798 ; + skos:exactMatch ; linkml:examples "Example(value='sketch', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000799 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "elevator" ; dcterms:title "elevator count" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "elevator count" ; skos:definition "The number of elevators within the built structure" ; - skos:exactMatch MIXS:0000799 ; + skos:exactMatch ; linkml:examples "Example(value='2', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" . -MIXS:0000800 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "escalator" ; dcterms:title "escalator count" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "escalator count" ; skos:definition "The number of escalators within the built structure" ; - skos:exactMatch MIXS:0000800 ; + skos:exactMatch ; linkml:examples "Example(value='4', description=None)" ; nmdc:expected_value "value" ; nmdc:occurrence "1" . -MIXS:0000802 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "fireplace_type" ; dcterms:title "fireplace type" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "fireplace type" ; skos:definition "A firebox with chimney" ; - skos:exactMatch MIXS:0000802 ; + skos:exactMatch ; linkml:examples "Example(value='wood burning', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000803 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "floor_cond" ; dcterms:title "floor condition" ; - rdfs:range MIXS:FloorCondEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "floor condition" ; skos:definition "The physical condition of the floor at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas" ; - skos:exactMatch MIXS:0000803 ; + skos:exactMatch ; linkml:examples "Example(value='new', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000804 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "floor_finish_mat" ; dcterms:title "floor finish material" ; - rdfs:range MIXS:FloorFinishMatEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "floor finish material" ; skos:definition "The floor covering type; the finished surface that is walked on" ; - skos:exactMatch MIXS:0000804 ; + skos:exactMatch ; linkml:examples "Example(value='carpet', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000805 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "floor_water_mold" ; dcterms:title "floor signs of water/mold" ; - rdfs:range MIXS:FloorWaterMoldEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "floor signs of water/mold" ; skos:definition "Signs of the presence of mold or mildew in a room" ; - skos:exactMatch MIXS:0000805 ; + skos:exactMatch ; linkml:examples "Example(value='ceiling discoloration', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000806 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "floor_struc" ; dcterms:title "floor structure" ; - rdfs:range MIXS:FloorStrucEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "floor structure" ; skos:definition "Refers to the structural elements and subfloor upon which the finish flooring is installed" ; - skos:exactMatch MIXS:0000806 ; + skos:exactMatch ; linkml:examples "Example(value='concrete', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000807 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "furniture" ; dcterms:title "furniture" ; - rdfs:range MIXS:FurnitureEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "furniture" ; skos:definition "The types of furniture present in the sampled room" ; - skos:exactMatch MIXS:0000807 ; + skos:exactMatch ; linkml:examples "Example(value='chair', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000808 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "gender_restroom" ; dcterms:title "gender of restroom" ; - rdfs:range MIXS:GenderRestroomEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "gender of restroom" ; skos:definition "The gender type of the restroom" ; - skos:exactMatch MIXS:0000808 ; + skos:exactMatch ; linkml:examples "Example(value='male', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000809 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "handidness" ; dcterms:title "handidness" ; - rdfs:range MIXS:HandidnessEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "handidness" ; skos:definition "The handidness of the individual sampled" ; - skos:exactMatch MIXS:0000809 ; + skos:exactMatch ; linkml:examples "Example(value='right handedness', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000810 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "heat_deliv_loc" ; dcterms:title "heating delivery locations" ; - rdfs:range MIXS:HeatDelivLocEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "heating delivery locations" ; skos:definition "The location of heat delivery within the room" ; - skos:exactMatch MIXS:0000810 ; + skos:exactMatch ; linkml:examples "Example(value='north', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000811 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_sex" ; dcterms:title "host sex" ; - rdfs:range MIXS:HostSexEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "host sex" ; skos:definition "Gender or physical sex of the host." ; - skos:exactMatch MIXS:0000811 ; + skos:exactMatch ; linkml:examples "Example(value='non-binary', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000812 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "heat_sys_deliv_meth" ; dcterms:title "heating system delivery method" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "heating system delivery method" ; skos:definition "The method by which the heat is delivered through the system" ; - skos:exactMatch MIXS:0000812 ; + skos:exactMatch ; linkml:examples "Example(value='radiant', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000813 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "int_wall_cond" ; dcterms:title "interior wall condition" ; - rdfs:range MIXS:IntWallCondEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "interior wall condition" ; skos:definition "The physical condition of the wall at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas" ; - skos:exactMatch MIXS:0000813 ; + skos:exactMatch ; linkml:examples "Example(value='damaged', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000814 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "last_clean" ; dcterms:title "last time swept/mopped/vacuumed" ; rdfs:range nmdc:TimestampValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "last time swept/mopped/vacuumed" ; skos:definition "The last time the floor was cleaned (swept, mopped, vacuumed)" ; - skos:exactMatch MIXS:0000814 ; + skos:exactMatch ; linkml:examples "Example(value='2018-05-11:T14:30Z', description=None)" ; nmdc:expected_value "timestamp" ; nmdc:occurrence "1" . -MIXS:0000815 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "mech_struc" ; dcterms:title "mechanical structure" ; - rdfs:range MIXS:MechStrucEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "mechanical structure" ; skos:definition "mechanical structure: a moving structure" ; - skos:exactMatch MIXS:0000815 ; + skos:exactMatch ; linkml:examples "Example(value='elevator', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000816 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "occup_document" ; dcterms:title "occupancy documentation" ; - rdfs:range MIXS:OccupDocumentEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "occupancy documentation" ; skos:definition "The type of documentation of occupancy" ; - skos:exactMatch MIXS:0000816 ; + skos:exactMatch ; linkml:examples "Example(value='estimate', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000817 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ext_wall_orient" ; dcterms:title "orientations of exterior wall" ; - rdfs:range MIXS:ExtWallOrientEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "orientations of exterior wall" ; skos:definition "The orientation of the exterior wall" ; - skos:exactMatch MIXS:0000817 ; + skos:exactMatch ; linkml:examples "Example(value='northwest', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000818 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ext_window_orient" ; dcterms:title "orientations of exterior window" ; - rdfs:range MIXS:ExtWindowOrientEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "orientations of exterior window" ; skos:definition "The compass direction the exterior window of the room is facing" ; - skos:exactMatch MIXS:0000818 ; + skos:exactMatch ; linkml:examples "Example(value='southwest', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000819 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "pres_animal_insect" ; dcterms:title "presence of pets, animals, or insects" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "presence of pets, animals, or insects" ; skos:definition "The type and number of animals or insects present in the sampling space." ; - skos:exactMatch MIXS:0000819 ; + skos:exactMatch ; linkml:examples "Example(value='cat;5', description=None)" ; nmdc:expected_value "enumeration;count" ; nmdc:occurrence "1" . -MIXS:0000820 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "quad_pos" ; dcterms:title "quadrant position" ; - rdfs:range MIXS:QuadPosEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "quadrant position" ; skos:definition "The quadrant position of the sampling room within the building" ; - skos:exactMatch MIXS:0000820 ; + skos:exactMatch ; linkml:examples "Example(value='West side', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000821 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "rel_samp_loc" ; dcterms:title "relative sampling location" ; - rdfs:range MIXS:RelSampLocEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "relative sampling location" ; skos:definition "The sampling location within the train car" ; - skos:exactMatch MIXS:0000821 ; + skos:exactMatch ; linkml:examples "Example(value='center of car', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000822 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_condt" ; dcterms:title "room condition" ; - rdfs:range MIXS:RoomCondtEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "room condition" ; skos:definition "The condition of the room at the time of sampling" ; - skos:exactMatch MIXS:0000822 ; + skos:exactMatch ; linkml:examples "Example(value='new', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000823 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_loc" ; dcterms:title "room location in building" ; - rdfs:range MIXS:RoomLocEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "room location in building" ; skos:definition "The position of the room within the building" ; - skos:exactMatch MIXS:0000823 ; + skos:exactMatch ; linkml:examples "Example(value='interior room', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000824 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_samp_pos" ; dcterms:title "room sampling position" ; - rdfs:range MIXS:RoomSampPosEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "room sampling position" ; skos:definition "The horizontal sampling position in the room relative to architectural elements" ; - skos:exactMatch MIXS:0000824 ; + skos:exactMatch ; linkml:examples "Example(value='south corner', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000825 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_type" ; dcterms:title "room type" ; - rdfs:range MIXS:RoomTypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "room type" ; skos:definition "The main purpose or activity of the sampling room. A room is any distinguishable space within a structure" ; - skos:exactMatch MIXS:0000825 ; + skos:exactMatch ; linkml:examples "Example(value='bathroom', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000826 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "room_connected" ; dcterms:title "rooms connected by a doorway" ; - rdfs:range MIXS:RoomConnectedEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "rooms connected by a doorway" ; skos:definition "List of rooms connected to the sampling room by a doorway" ; - skos:exactMatch MIXS:0000826 ; + skos:exactMatch ; linkml:examples "Example(value='office', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000827 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_weather" ; dcterms:title "sampling day weather" ; - rdfs:range MIXS:SampWeatherEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "sampling day weather" ; skos:definition "The weather on the sampling day" ; - skos:exactMatch MIXS:0000827 ; + skos:exactMatch ; linkml:examples "Example(value='foggy', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000828 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_floor" ; dcterms:title "sampling floor" ; - rdfs:range MIXS:SampFloorEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "sampling floor" ; skos:definition "The floor of the building, where the sampling room is located" ; - skos:exactMatch MIXS:0000828 ; + skos:exactMatch ; linkml:examples "Example(value='4th floor', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000829 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "season" ; dcterms:title "season" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "season" ; skos:definition "The season when sampling occurred. Any of the four periods into which the year is divided by the equinoxes and solstices. This field accepts terms listed under season (http://purl.obolibrary.org/obo/NCIT_C94729)." ; - skos:exactMatch MIXS:0000829 ; + skos:exactMatch ; linkml:examples "Example(value='autumn [NCIT:C94733]', description=None)" ; nmdc:expected_value "NCIT:C94729" ; nmdc:occurrence "1" . -MIXS:0000830 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "season_use" ; dcterms:title "seasonal use" ; - rdfs:range MIXS:SeasonUseEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "seasonal use" ; skos:definition "The seasons the space is occupied" ; - skos:exactMatch MIXS:0000830 ; + skos:exactMatch ; linkml:examples "Example(value='Winter', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000831 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "shading_device_cond" ; dcterms:title "shading device condition" ; - rdfs:range MIXS:ShadingDeviceCondEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "shading device condition" ; skos:definition "The physical condition of the shading device at the time of sampling" ; - skos:exactMatch MIXS:0000831 ; + skos:exactMatch ; linkml:examples "Example(value='new', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000832 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "shading_device_loc" ; dcterms:title "shading device location" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "shading device location" ; skos:definition "The location of the shading device in relation to the built structure" ; - skos:exactMatch MIXS:0000832 ; + skos:exactMatch ; linkml:examples "Example(value='exterior', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000833 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "heat_system_id" ; dcterms:title "heating system identifier" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "heating system identifier" ; skos:definition "The heating system identifier" ; - skos:exactMatch MIXS:0000833 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "unique identifier" ; nmdc:occurrence "1" . -MIXS:0000834 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "shad_dev_water_mold" ; dcterms:title "shading device signs of water/mold" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "shading device signs of water/mold" ; skos:definition "Signs of the presence of mold or mildew on the shading device" ; - skos:exactMatch MIXS:0000834 ; + skos:exactMatch ; linkml:examples "Example(value='no presence of mold visible', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000835 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "shading_device_type" ; dcterms:title "shading device type" ; - rdfs:range MIXS:ShadingDeviceTypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "shading device type" ; skos:definition "The type of shading device" ; - skos:exactMatch MIXS:0000835 ; + skos:exactMatch ; linkml:examples "Example(value='slatted aluminum awning', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000836 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "specific" ; dcterms:title "specifications" ; - rdfs:range MIXS:SpecificEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "specifications" ; skos:definition "The building specifications. If design is chosen, indicate phase: conceptual, schematic, design development, construction documents" ; - skos:exactMatch MIXS:0000836 ; + skos:exactMatch ; linkml:examples "Example(value='construction', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000837 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "train_line" ; dcterms:title "train line" ; - rdfs:range MIXS:TrainLineEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "train line" ; skos:definition "The subway line name" ; - skos:exactMatch MIXS:0000837 ; + skos:exactMatch ; linkml:examples "Example(value='red', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000838 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "train_stat_loc" ; dcterms:title "train station collection location" ; - rdfs:range MIXS:TrainStatLocEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "train station collection location" ; skos:definition "The train station collection location" ; - skos:exactMatch MIXS:0000838 ; + skos:exactMatch ; linkml:examples "Example(value='forest hills', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000839 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "train_stop_loc" ; dcterms:title "train stop collection location" ; - rdfs:range MIXS:TrainStopLocEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "train stop collection location" ; skos:definition "The train stop collection location" ; - skos:exactMatch MIXS:0000839 ; + skos:exactMatch ; linkml:examples "Example(value='end', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000840 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "vis_media" ; dcterms:title "visual media" ; - rdfs:range MIXS:VisMediaEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "visual media" ; skos:definition "The building visual media" ; - skos:exactMatch MIXS:0000840 ; + skos:exactMatch ; linkml:examples "Example(value='3D scans', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000841 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "wall_const_type" ; dcterms:title "wall construction type" ; - rdfs:range MIXS:WallConstTypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "wall construction type" ; skos:definition "The building class of the wall defined by the composition of the building elements and fire-resistance rating." ; - skos:exactMatch MIXS:0000841 ; + skos:exactMatch ; linkml:examples "Example(value='fire resistive', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000842 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "wall_finish_mat" ; dcterms:title "wall finish material" ; - rdfs:range MIXS:WallFinishMatEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "wall finish material" ; skos:definition "The material utilized to finish the outer most layer of the wall" ; - skos:exactMatch MIXS:0000842 ; + skos:exactMatch ; linkml:examples "Example(value='wood', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000843 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "wall_loc" ; dcterms:title "wall location" ; - rdfs:range MIXS:WallLocEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "wall location" ; skos:definition "The relative location of the wall within the room" ; - skos:exactMatch MIXS:0000843 ; + skos:exactMatch ; linkml:examples "Example(value='north', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000844 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "wall_water_mold" ; dcterms:title "wall signs of water/mold" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "wall signs of water/mold" ; skos:definition "Signs of the presence of mold or mildew on a wall" ; - skos:exactMatch MIXS:0000844 ; + skos:exactMatch ; linkml:examples "Example(value='no presence of mold visible', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000845 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "wall_surf_treatment" ; dcterms:title "wall surface treatment" ; - rdfs:range MIXS:WallSurfTreatmentEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "wall surface treatment" ; skos:definition "The surface treatment of interior wall" ; - skos:exactMatch MIXS:0000845 ; + skos:exactMatch ; linkml:examples "Example(value='paneling', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000846 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "wall_texture" ; dcterms:title "wall texture" ; - rdfs:range MIXS:WallTextureEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "wall texture" ; skos:definition "The feel, appearance, or consistency of a wall surface" ; - skos:exactMatch MIXS:0000846 ; + skos:exactMatch ; linkml:examples "Example(value='popcorn', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000847 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "water_feat_type" ; dcterms:title "water feature type" ; - rdfs:range MIXS:WaterFeatTypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "water feature type" ; skos:definition "The type of water feature present within the building being sampled" ; - skos:exactMatch MIXS:0000847 ; + skos:exactMatch ; linkml:examples "Example(value='stream', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000848 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "weekday" ; dcterms:title "weekday" ; - rdfs:range MIXS:WeekdayEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "weekday" ; skos:definition "The day of the week when sampling occurred" ; - skos:exactMatch MIXS:0000848 ; + skos:exactMatch ; linkml:examples "Example(value='Sunday', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000849 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "window_cond" ; dcterms:title "window condition" ; - rdfs:range MIXS:WindowCondEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "window condition" ; skos:definition "The physical condition of the window at the time of sampling" ; - skos:exactMatch MIXS:0000849 ; + skos:exactMatch ; linkml:examples "Example(value='rupture', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000850 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "window_cover" ; dcterms:title "window covering" ; - rdfs:range MIXS:WindowCoverEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "window covering" ; skos:definition "The type of window covering" ; - skos:exactMatch MIXS:0000850 ; + skos:exactMatch ; linkml:examples "Example(value='curtains', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000851 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "window_horiz_pos" ; dcterms:title "window horizontal position" ; - rdfs:range MIXS:WindowHorizPosEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "window horizontal position" ; skos:definition "The horizontal position of the window on the wall" ; - skos:exactMatch MIXS:0000851 ; + skos:exactMatch ; linkml:examples "Example(value='middle', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000852 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "window_loc" ; dcterms:title "window location" ; - rdfs:range MIXS:WindowLocEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "window location" ; skos:definition "The relative location of the window within the room" ; - skos:exactMatch MIXS:0000852 ; + skos:exactMatch ; linkml:examples "Example(value='west', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000853 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "window_mat" ; dcterms:title "window material" ; - rdfs:range MIXS:WindowMatEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "window material" ; skos:definition "The type of material used to finish a window" ; - skos:exactMatch MIXS:0000853 ; + skos:exactMatch ; linkml:examples "Example(value='wood', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000854 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "window_water_mold" ; dcterms:title "window signs of water/mold" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "window signs of water/mold" ; skos:definition "Signs of the presence of mold or mildew on the window." ; - skos:exactMatch MIXS:0000854 ; + skos:exactMatch ; linkml:examples "Example(value='no presence of mold visible', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000855 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "window_status" ; dcterms:title "window status" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "window status" ; skos:definition "Defines whether the windows were open or closed during environmental testing" ; - skos:exactMatch MIXS:0000855 ; + skos:exactMatch ; linkml:examples "Example(value='open', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000856 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "window_type" ; dcterms:title "window type" ; - rdfs:range MIXS:WindowTypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "window type" ; skos:definition "The type of windows" ; - skos:exactMatch MIXS:0000856 ; + skos:exactMatch ; linkml:examples "Example(value='fixed window', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000857 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "window_vert_pos" ; dcterms:title "window vertical position" ; - rdfs:range MIXS:WindowVertPosEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "window vertical position" ; skos:definition "The vertical position of the window on the wall" ; - skos:exactMatch MIXS:0000857 ; + skos:exactMatch ; linkml:examples "Example(value='middle', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000858 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "biol_stat" ; dcterms:title "biological status" ; - rdfs:range MIXS:BiolStatEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "biological status" ; skos:definition "The level of genome modification." ; - skos:exactMatch MIXS:0000858 ; + skos:exactMatch ; linkml:examples "Example(value='natural', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000859 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "genetic_mod" ; dcterms:title "genetic modification" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "genetic modification" ; skos:definition "Genetic modifications of the genome of an organism, which may occur naturally by spontaneous mutation, or be introduced by some experimental means, e.g. specification of a transgene or the gene knocked-out or details of transient transfection" ; - skos:exactMatch MIXS:0000859 ; + skos:exactMatch ; linkml:examples "Example(value='aox1A transgenic', description=None)" ; nmdc:expected_value "PMID,DOI,url or free text" ; nmdc:occurrence "1" . -MIXS:0000860 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_capt_status" ; dcterms:title "sample capture status" ; - rdfs:range MIXS:SampCaptStatusEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "sample capture status" ; skos:definition "Reason for the sample" ; - skos:exactMatch MIXS:0000860 ; + skos:exactMatch ; linkml:examples "Example(value='farm sample', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000861 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_subject_id" ; dcterms:title "host subject id" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host subject id" ; skos:definition "A unique identifier by which each subject can be referred to, de-identified." ; - skos:exactMatch MIXS:0000861 ; + skos:exactMatch ; linkml:examples "Example(value='MPI123', description=None)" ; nmdc:expected_value "unique identifier" ; nmdc:occurrence "1" . -MIXS:0000866 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_body_habitat" ; dcterms:title "host body habitat" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host body habitat" ; skos:definition "Original body habitat where the sample was obtained from" ; - skos:exactMatch MIXS:0000866 ; + skos:exactMatch ; linkml:examples "Example(value='nasopharynx', description=None)" ; nmdc:expected_value "free text" ; nmdc:occurrence "1" . -MIXS:0000867 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_body_site" ; dcterms:title "host body site" ; rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host body site" ; skos:definition "Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). For foundational model of anatomy ontology (fma) (v 4.11.0) or Uber-anatomy ontology (UBERON) (v releases/2014-06-15) terms, please see http://purl.bioontology.org/ontology/FMA or http://purl.bioontology.org/ontology/UBERON" ; - skos:exactMatch MIXS:0000867 ; + skos:exactMatch ; linkml:examples "Example(value='gill [UBERON:0002535]', description=None)" ; nmdc:expected_value "FMA or UBERON" ; nmdc:occurrence "1" . -MIXS:0000869 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_diet" ; dcterms:title "host diet" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host diet" ; skos:definition "Type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types" ; - skos:exactMatch MIXS:0000869 ; + skos:exactMatch ; linkml:examples "Example(value='herbivore', description=None)" ; nmdc:expected_value "diet type" ; nmdc:occurrence "m" . -MIXS:0000870 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_last_meal" ; dcterms:title "host last meal" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host last meal" ; skos:definition "Content of last meal and time since feeding; can include multiple values" ; - skos:exactMatch MIXS:0000870 ; + skos:exactMatch ; linkml:examples "Example(value='corn feed;P2H', description=None)" ; nmdc:expected_value "content;duration" ; nmdc:occurrence "m" . -MIXS:0000871 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_growth_cond" ; dcterms:title "host growth conditions" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host growth conditions" ; skos:definition "Literature reference giving growth conditions of the host" ; - skos:exactMatch MIXS:0000871 ; + skos:exactMatch ; linkml:examples "Example(value='https://academic.oup.com/icesjms/article/68/2/349/617247', description=None)" ; nmdc:expected_value "PMID,DOI,url or free text" ; nmdc:occurrence "1" . -MIXS:0000872 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_family_relation" ; dcterms:title "host family relationship" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host family relationship" ; skos:definition "Familial relationships to other hosts in the same study; can include multiple relationships" ; - skos:exactMatch MIXS:0000872 ; + skos:exactMatch ; linkml:examples "Example(value='offspring;Mussel25', description=None)" ; nmdc:expected_value "relationship type;arbitrary identifier" ; nmdc:occurrence "m" . -MIXS:0000874 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_phenotype" ; dcterms:title "host phenotype" ; rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host phenotype" ; skos:definition "Phenotype of human or other host. For phenotypic quality ontology (pato) (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato. For Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP" ; - skos:exactMatch MIXS:0000874 ; + skos:exactMatch ; linkml:examples "Example(value='elongated [PATO:0001154]', description=None)" ; nmdc:expected_value "PATO or HP" ; nmdc:occurrence "1" . -MIXS:0000875 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "gravidity" ; dcterms:title "gravidity" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "gravidity" ; skos:definition "Whether or not subject is gravid, and if yes date due or date post-conception, specifying which is used" ; - skos:exactMatch MIXS:0000875 ; + skos:exactMatch ; linkml:examples "Example(value='yes;due date:2018-05-11', description=None)" ; nmdc:expected_value "gravidity status;timestamp" ; nmdc:occurrence "1" . -MIXS:0000888 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_body_product" ; dcterms:title "host body product" ; rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host body product" ; skos:definition "Substance produced by the body, e.g. Stool, mucus, where the sample was obtained from. For foundational model of anatomy ontology (fma) or Uber-anatomy ontology (UBERON) terms, please see https://www.ebi.ac.uk/ols/ontologies/fma or https://www.ebi.ac.uk/ols/ontologies/uberon" ; - skos:exactMatch MIXS:0000888 ; + skos:exactMatch ; linkml:examples "Example(value='Portion of mucus [fma66938]', description=None)" ; nmdc:expected_value "FMA or UBERON" ; nmdc:occurrence "1" . -MIXS:0000988 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "hcr" ; dcterms:title "hydrocarbon resource type" ; - rdfs:range MIXS:HcrEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "hydrocarbon resource type" ; skos:definition "Main Hydrocarbon Resource type. The term \"Hydrocarbon Resource\" HCR defined as a natural environmental feature containing large amounts of hydrocarbons at high concentrations potentially suitable for commercial exploitation. This term should not be confused with the Hydrocarbon Occurrence term which also includes hydrocarbon-rich environments with currently limited commercial interest such as seeps, outcrops, gas hydrates etc. If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:exactMatch MIXS:0000988 ; + skos:exactMatch ; linkml:examples "Example(value='Oil Sand', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000989 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "hc_produced" ; dcterms:title "hydrocarbon type produced" ; - rdfs:range MIXS:HcProducedEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "hydrocarbon type produced" ; skos:definition "Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate, etc). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:exactMatch MIXS:0000989 ; + skos:exactMatch ; linkml:examples "Example(value='Gas', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000990 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "lithology" ; dcterms:title "lithology" ; - rdfs:range MIXS:LithologyEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "lithology" ; skos:definition "Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:exactMatch MIXS:0000990 ; + skos:exactMatch ; linkml:examples "Example(value='Volcanic', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000992 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "depos_env" ; dcterms:title "depositional environment" ; - rdfs:range MIXS:DeposEnvEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "depositional environment" ; skos:definition "Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:exactMatch MIXS:0000992 ; + skos:exactMatch ; linkml:examples "Example(value='Continental - Alluvial', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000993 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "hcr_geol_age" ; dcterms:title "hydrocarbon resource geological age" ; - rdfs:range MIXS:HcrGeolAgeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "hydrocarbon resource geological age" ; skos:definition "Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:exactMatch MIXS:0000993 ; + skos:exactMatch ; linkml:examples "Example(value='Silurian', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000994 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "sr_kerog_type" ; dcterms:title "source rock kerogen type" ; - rdfs:range MIXS:SrKerogTypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "source rock kerogen type" ; skos:definition "Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/ fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris (terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:exactMatch MIXS:0000994 ; + skos:exactMatch ; linkml:examples "Example(value='Type IV', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000995 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "sr_lithology" ; dcterms:title "source rock lithology" ; - rdfs:range MIXS:SrLithologyEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "source rock lithology" ; skos:definition "Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:exactMatch MIXS:0000995 ; + skos:exactMatch ; linkml:examples "Example(value='Coal', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000996 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "sr_dep_env" ; dcterms:title "source rock depositional environment" ; - rdfs:range MIXS:SrDepEnvEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "source rock depositional environment" ; skos:definition "Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:exactMatch MIXS:0000996 ; + skos:exactMatch ; linkml:examples "Example(value='Marine', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000997 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "sr_geol_age" ; dcterms:title "source rock geological age" ; - rdfs:range MIXS:SrGeolAgeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "source rock geological age" ; skos:definition "Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:exactMatch MIXS:0000997 ; + skos:exactMatch ; linkml:examples "Example(value='Silurian', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0000998 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_type" ; dcterms:title "sample type" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "sample type" ; skos:definition "The type of material from which the sample was obtained. For the Hydrocarbon package, samples include types like core, rock trimmings, drill cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, produced water, injected water, swabs, etc. For the Food Package, samples are usually categorized as food, body products or tissues, or environmental material. This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)." ; - skos:exactMatch MIXS:0000998 ; + skos:exactMatch ; linkml:examples "Example(value='built environment sample [GENEPIO:0001248]', description=None)" ; nmdc:expected_value "GENEPIO:0001246" ; nmdc:occurrence "1" . -MIXS:0000999 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_subtype" ; dcterms:title "sample subtype" ; - rdfs:range MIXS:SampSubtypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "sample subtype" ; skos:definition "Name of sample sub-type. For example if \"sample type\" is \"Produced Water\" then subtype could be \"Oil Phase\" or \"Water Phase\". If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:exactMatch MIXS:0000999 ; + skos:exactMatch ; linkml:examples "Example(value='biofilm', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0001001 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ph" ; dcterms:title "pH" ; rdfs:range linkml:Double ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "pH" ; skos:definition "Ph measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid" ; - skos:exactMatch MIXS:0001001 ; + skos:exactMatch ; linkml:examples "Example(value='7.2', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" . -MIXS:0001008 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "prod_start_date" ; dcterms:title "production start date" ; rdfs:range nmdc:TimestampValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "production start date" ; skos:definition "Date of field's first production" ; - skos:exactMatch MIXS:0001008 ; + skos:exactMatch ; linkml:examples "Example(value='2018-05-11', description=None)" ; nmdc:expected_value "timestamp" ; nmdc:occurrence "1" . -MIXS:0001009 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "add_recov_method" ; dcterms:title "secondary and tertiary recovery methods and start date" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "secondary and tertiary recovery methods and start date" ; skos:definition "Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed for increase of hydrocarbon recovery from resource and start date for each one of them. If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:exactMatch MIXS:0001009 ; + skos:exactMatch ; linkml:examples "Example(value='Polymer Addition;2018-06-21T14:30Z', description=None)" ; nmdc:expected_value "enumeration;timestamp" ; nmdc:occurrence "1" . -MIXS:0001010 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "iw_bt_date_well" ; dcterms:title "injection water breakthrough date of specific well" ; rdfs:range nmdc:TimestampValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "injection water breakthrough date of specific well" ; skos:definition "Injection water breakthrough date per well following a secondary and/or tertiary recovery" ; - skos:exactMatch MIXS:0001010 ; + skos:exactMatch ; linkml:examples "Example(value='2018-05-11', description=None)" ; nmdc:expected_value "timestamp" ; nmdc:occurrence "1" . -MIXS:0001011 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "biocide" ; dcterms:title "biocide administration" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "biocide administration" ; skos:definition "List of biocides (commercial name of product and supplier) and date of administration" ; - skos:exactMatch MIXS:0001011 ; + skos:exactMatch ; linkml:examples "Example(value='ALPHA 1427;Baker Hughes;2008-01-23', description=None)" ; nmdc:expected_value "name;name;timestamp" ; nmdc:occurrence "1" . -MIXS:0001012 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "chem_treatment" ; dcterms:title "chemical treatment" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "chemical treatment" ; skos:definition "List of chemical compounds administered upstream the sampling location where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors, demulsifiers, and other production chemicals etc.). The commercial name of the product and name of the supplier should be provided. The date of administration should also be included" ; - skos:exactMatch MIXS:0001012 ; + skos:exactMatch ; linkml:examples "Example(value='ACCENT 1125;DOW;2010-11-17', description=None)" ; nmdc:expected_value "name;name;timestamp" ; nmdc:occurrence "1" . -MIXS:0001015 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_collect_point" ; dcterms:title "sample collection point" ; - rdfs:range MIXS:SampCollectPointEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "sample collection point" ; skos:definition "Sampling point on the asset were sample was collected (e.g. Wellhead, storage tank, separator, etc). If \"other\" is specified, please propose entry in \"additional info\" field" ; - skos:exactMatch MIXS:0001015 ; + skos:exactMatch ; linkml:examples "Example(value='well', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0001038 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "biotic_regm" ; dcterms:title "biotic regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "biotic regimen" ; skos:definition "Information about treatment(s) involving use of biotic factors, such as bacteria, viruses or fungi." ; - skos:exactMatch MIXS:0001038 ; + skos:exactMatch ; linkml:examples "Example(value='sample inoculated with Rhizobium spp. Culture', description=None)" ; nmdc:expected_value "free text" ; nmdc:occurrence "1" . -MIXS:0001040 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "climate_environment" ; dcterms:title "climate environment" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "climate environment" ; skos:definition "Treatment involving an exposure to a particular climate; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple climates" ; - skos:exactMatch MIXS:0001040 ; + skos:exactMatch ; linkml:examples "Example(value='tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "climate name;treatment interval and duration" ; nmdc:occurrence "m" . -MIXS:0001041 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "cult_root_med" ; dcterms:title "culture rooting medium" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "culture rooting medium" ; skos:definition "Name or reference for the hydroponic or in vitro culture rooting medium; can be the name of a commonly used medium or reference to a specific medium, e.g. Murashige and Skoog medium. If the medium has not been formally published, use the rooting medium descriptors." ; - skos:exactMatch MIXS:0001041 ; + skos:exactMatch ; linkml:examples "Example(value='http://himedialabs.com/TD/PT158.pdf', description=None)" ; nmdc:expected_value "name, PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0001043 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "growth_facil" ; dcterms:title "growth facility" ; rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "growth facility" ; skos:definition "Type of facility where the sampled plant was grown; controlled vocabulary: growth chamber, open top chamber, glasshouse, experimental garden, field. Alternatively use Crop Ontology (CO) terms, see http://www.cropontology.org/ontology/CO_715/Crop%20Research" ; - skos:exactMatch MIXS:0001043 ; + skos:exactMatch ; linkml:examples "Example(value='Growth chamber [CO_715:0000189]', description=None)" ; nmdc:expected_value "free text or CO" ; nmdc:occurrence "1" . -MIXS:0001044 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "growth_habit" ; dcterms:title "growth habit" ; - rdfs:range MIXS:GrowthHabitEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "growth habit" ; skos:definition "Characteristic shape, appearance or growth form of a plant species" ; - skos:exactMatch MIXS:0001044 ; + skos:exactMatch ; linkml:examples "Example(value='spreading', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0001052 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "mechanical_damage" ; dcterms:title "mechanical damage" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "mechanical damage" ; skos:definition "Information about any mechanical damage exerted on the plant; can include multiple damages and sites" ; - skos:exactMatch MIXS:0001052 ; + skos:exactMatch ; linkml:examples "Example(value='pruning;bark', description=None)" ; nmdc:expected_value "damage type;body site" ; nmdc:occurrence "m" . -MIXS:0001056 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ph_regm" ; dcterms:title "pH regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "pH regimen" ; skos:definition "Information about treatment involving exposure of plants to varying levels of ph of the growth media, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimen" ; - skos:exactMatch MIXS:0001056 ; + skos:exactMatch ; linkml:examples "Example(value='7.6;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "measurement value;treatment interval and duration" ; nmdc:occurrence "m" . -MIXS:0001057 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "plant_growth_med" ; dcterms:title "plant growth medium" ; rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "plant growth medium" ; skos:definition "Specification of the media for growing the plants or tissue cultured samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in vitro liquid culture medium. Recommended value is a specific value from EO:plant growth medium (follow this link for terms http://purl.obolibrary.org/obo/EO_0007147) or other controlled vocabulary" ; - skos:exactMatch MIXS:0001057 ; + skos:exactMatch ; linkml:examples "Example(value='hydroponic plant culture media [EO:0007067]', description=None)" ; nmdc:expected_value "EO or enumeration" ; nmdc:occurrence "1" . -MIXS:0001058 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "plant_product" ; dcterms:title "plant product" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "plant product" ; skos:definition "Substance produced by the plant, where the sample was obtained from" ; - skos:exactMatch MIXS:0001058 ; + skos:exactMatch ; linkml:examples "Example(value='xylem sap [PO:0025539]', description=None)" ; nmdc:expected_value "product name" ; nmdc:occurrence "1" . -MIXS:0001059 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "plant_sex" ; dcterms:title "plant sex" ; - rdfs:range MIXS:PlantSexEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "plant sex" ; skos:definition "Sex of the reproductive parts on the whole plant, e.g. pistillate, staminate, monoecieous, hermaphrodite." ; - skos:exactMatch MIXS:0001059 ; + skos:exactMatch ; linkml:examples "Example(value='Hermaphroditic', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0001060 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "plant_struc" ; dcterms:title "plant structure" ; rdfs:range nmdc:ControlledTermValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "plant structure" ; skos:definition "Name of plant structure the sample was obtained from; for Plant Ontology (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO, e.g. petiole epidermis (PO_0000051). If an individual flower is sampled, the sex of it can be recorded here." ; - skos:exactMatch MIXS:0001060 ; + skos:exactMatch ; linkml:examples "Example(value='epidermis [PO:0005679]', description=None)" ; nmdc:expected_value "PO" ; nmdc:occurrence "1" . -MIXS:0001061 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "root_cond" ; dcterms:title "rooting conditions" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "rooting conditions" ; skos:definition "Relevant rooting conditions such as field plot size, sowing density, container dimensions, number of plants per container." ; - skos:exactMatch MIXS:0001061 ; + skos:exactMatch ; linkml:examples "Example(value='http://himedialabs.com/TD/PT158.pdf', description=None)" ; nmdc:expected_value "PMID,DOI,url or free text" ; nmdc:occurrence "1" . -MIXS:0001062 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "root_med_ph" ; dcterms:title "rooting medium pH" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "rooting medium pH" ; skos:definition "pH measurement of the culture rooting medium; e.g. 5.5." ; - skos:exactMatch MIXS:0001062 ; + skos:exactMatch ; linkml:examples "Example(value='7.5', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:occurrence "1" . -MIXS:0001063 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "root_med_solid" ; dcterms:title "rooting medium solidifier" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "rooting medium solidifier" ; skos:definition "Specification of the solidifying agent in the culture rooting medium; e.g. agar." ; - skos:exactMatch MIXS:0001063 ; + skos:exactMatch ; linkml:examples "Example(value='agar', description=None)" ; nmdc:expected_value "name" ; nmdc:occurrence "1" . -MIXS:0001068 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "season_environment" ; dcterms:title "seasonal environment" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "seasonal environment" ; skos:definition "Treatment involving an exposure to a particular season (e.g. Winter, summer, rabi, rainy etc.), treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment" ; - skos:exactMatch MIXS:0001068 ; + skos:exactMatch ; linkml:examples "Example(value='rainy;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "seasonal environment name;treatment interval and duration" ; nmdc:occurrence "m" . -MIXS:0001069 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "standing_water_regm" ; dcterms:title "standing water regimen" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "standing water regimen" ; skos:definition "Treatment involving an exposure to standing water during a plant's life span, types can be flood water or standing water, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; - skos:exactMatch MIXS:0001069 ; + skos:exactMatch ; linkml:examples "Example(value='standing water;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None)" ; nmdc:expected_value "standing water type;treatment interval and duration" ; nmdc:occurrence "m" . -MIXS:0001070 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tiss_cult_growth_med" ; dcterms:title "tissue culture growth media" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "tissue culture growth media" ; skos:definition "Description of plant tissue culture growth media used" ; - skos:exactMatch MIXS:0001070 ; + skos:exactMatch ; linkml:examples "Example(value='https://link.springer.com/content/pdf/10.1007/BF02796489.pdf', description=None)" ; nmdc:expected_value "PMID,DOI,url or free text" ; nmdc:occurrence "1" . -MIXS:0001078 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "sediment_type" ; dcterms:title "sediment type" ; - rdfs:range MIXS:SedimentTypeEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "sediment type" ; skos:definition "Information about the sediment type based on major constituents" ; - skos:exactMatch MIXS:0001078 ; + skos:exactMatch ; linkml:examples "Example(value='biogenous', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0001080 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "cur_land_use" ; dcterms:title "current land use" ; - rdfs:range MIXS:CurLandUseEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "current land use" ; skos:definition "Present state of sample site" ; - skos:exactMatch MIXS:0001080 ; + skos:exactMatch ; linkml:examples "Example(value='conifers', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0001081 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "tillage" ; dcterms:title "history/tillage" ; - rdfs:range MIXS:TillageEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "history/tillage" ; skos:definition "Note method(s) used for tilling" ; - skos:exactMatch MIXS:0001081 ; + skos:exactMatch ; linkml:examples "Example(value='chisel', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "m" . -MIXS:0001082 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "soil_horizon" ; dcterms:title "soil horizon" ; - rdfs:range MIXS:SoilHorizonEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "soil horizon" ; skos:definition "Specific layer in the land area which measures parallel to the soil surface and possesses physical characteristics which differ from the layers above and beneath" ; - skos:exactMatch MIXS:0001082 ; + skos:exactMatch ; linkml:examples "Example(value='A horizon', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0001083 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "fao_class" ; dcterms:title "soil_taxonomic/FAO classification" ; - rdfs:range MIXS:FaoClassEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "soil_taxonomic/FAO classification" ; skos:definition "Soil classification from the FAO World Reference Database for Soil Resources. The list can be found at http://www.fao.org/nr/land/sols/soil/wrb-soil-maps/reference-groups" ; - skos:exactMatch MIXS:0001083 ; + skos:exactMatch ; linkml:examples "Example(value='Luvisols', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0001084 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "profile_position" ; dcterms:title "profile position" ; - rdfs:range MIXS:ProfilePositionEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "profile position" ; skos:definition "Cross-sectional position in the hillslope where sample was collected.sample area position in relation to surrounding areas" ; - skos:exactMatch MIXS:0001084 ; + skos:exactMatch ; linkml:examples "Example(value='summit', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0001085 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "drainage_class" ; dcterms:title "drainage classification" ; - rdfs:range MIXS:DrainageClassEnum ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:range ; + rdfs:subPropertyOf ; skos:altLabel "drainage classification" ; skos:definition "Drainage classification from a standard system such as the USDA system" ; - skos:exactMatch MIXS:0001085 ; + skos:exactMatch ; linkml:examples "Example(value='well', description=None)" ; nmdc:expected_value "enumeration" ; nmdc:occurrence "1" . -MIXS:0001086 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "fire" ; dcterms:title "history/fire" ; rdfs:range nmdc:TimestampValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "history/fire" ; skos:definition "Historical and/or physical evidence of fire" ; - skos:exactMatch MIXS:0001086 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "date" ; nmdc:occurrence "1" . -MIXS:0001097 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "atmospheric_data" ; dcterms:title "atmospheric data" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "atmospheric data" ; skos:definition "Measurement of atmospheric data; can include multiple data" ; - skos:exactMatch MIXS:0001097 ; + skos:exactMatch ; linkml:examples "Example(value='wind speed;9 knots', description=None)" ; nmdc:expected_value "atmospheric data name;measurement value" ; nmdc:occurrence "m" . -MIXS:0001106 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "ph_meth" ; dcterms:title "pH method" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "pH method" ; skos:definition "Reference or method used in determining ph" ; - skos:exactMatch MIXS:0001106 ; + skos:exactMatch ; linkml:examples "Example(value='', description=None)" ; nmdc:expected_value "PMID,DOI or url" ; nmdc:occurrence "1" . -MIXS:0001107 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_name" ; dcterms:title "sample name" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:investigation_field ; + rdfs:subPropertyOf ; skos:altLabel "sample name" ; skos:definition "A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name." ; - skos:exactMatch MIXS:0001107 ; + skos:exactMatch ; linkml:examples "Example(value='ISDsoil1', description=None)" ; nmdc:expected_value "text" . -MIXS:0001225 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_collec_method" ; dcterms:title "sample collection method" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:nucleic_acid_sequence_source_field ; + rdfs:subPropertyOf ; skos:altLabel "sample collection method" ; skos:definition "The method employed for collecting the sample." ; - skos:exactMatch MIXS:0001225 ; + skos:exactMatch ; linkml:examples "Example(value='swabbing', description=None)" ; nmdc:expected_value "PMID,DOI,url , or text" . -MIXS:0001298 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_symbiont" ; dcterms:title "observed host symbionts" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "observed host symbionts" ; skos:definition "The taxonomic name of the organism(s) found living in mutualistic, commensalistic, or parasitic symbiosis with the specific host." ; - skos:exactMatch MIXS:0001298 ; + skos:exactMatch ; linkml:examples "Example(value='flukeworms', description=None)" ; nmdc:expected_value "species name or common name" ; nmdc:occurrence "m" . -MIXS:0001318 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "host_subspecf_genlin" ; dcterms:title "host subspecific genetic lineage" ; rdfs:range linkml:String ; - rdfs:subPropertyOf MIXS:core_field ; + rdfs:subPropertyOf ; skos:altLabel "host subspecific genetic lineage" ; skos:definition "Information about the genetic distinctness of the host organism below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123." ; - skos:exactMatch MIXS:0001318 ; + skos:exactMatch ; linkml:examples "Example(value='serovar:Newport, variety:glabrum, cultivar: Red Delicious', description=None)" ; nmdc:expected_value "Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, e.g. serovar, biotype, ecotype, variety, cultivar." ; nmdc:occurrence "m" . -MIXS:0001320 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_taxon_id" ; dcterms:title "Taxonomy ID of DNA sample" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:investigation_field ; + rdfs:subPropertyOf ; skos:altLabel "Taxonomy ID of DNA sample" ; skos:definition "NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa sample. Use 'synthetic metagenome’ for mock community/positive controls, or 'blank sample' for negative controls." ; - skos:exactMatch MIXS:0001320 ; + skos:exactMatch ; linkml:examples "Example(value='Gut Metagenome [NCBI:txid749906]', description=None)" ; nmdc:expected_value "Taxonomy ID" . a owl:Class, - MIXS:ArchStrucEnum ; + ; rdfs:label "building" . a owl:Class, - MIXS:ArchStrucEnum ; + ; rdfs:label "home" . a owl:Class, - MIXS:ArchStrucEnum ; + ; rdfs:label "shed" . a owl:Class, - MIXS:BiolStatEnum ; + ; rdfs:label "breeder's line" . a owl:Class, - MIXS:BiolStatEnum ; + ; rdfs:label "clonal selection" . a owl:Class, - MIXS:BiolStatEnum ; + ; rdfs:label "hybrid" . a owl:Class, - MIXS:BiolStatEnum ; + ; rdfs:label "inbred line" . a owl:Class, - MIXS:BiolStatEnum ; + ; rdfs:label "mutant" . a owl:Class, - MIXS:BiolStatEnum ; + ; rdfs:label "natural" . a owl:Class, - MIXS:BiolStatEnum ; + ; rdfs:label "semi-natural" . a owl:Class, - MIXS:BiolStatEnum ; + ; rdfs:label "wild" . a owl:Class, - MIXS:BioticRelationshipEnum ; + ; rdfs:label "commensal" . a owl:Class, - MIXS:BioticRelationshipEnum ; + ; rdfs:label "free living" . a owl:Class, - MIXS:BioticRelationshipEnum ; + ; rdfs:label "parasite" . a owl:Class, - MIXS:BioticRelationshipEnum ; + ; rdfs:label "symbiont" . a owl:Class, - MIXS:BuildDocsEnum ; + ; rdfs:label "building information model" . a owl:Class, - MIXS:BuildDocsEnum ; + ; rdfs:label "commissioning report" . a owl:Class, - MIXS:BuildDocsEnum ; + ; rdfs:label "complaint logs" . a owl:Class, - MIXS:BuildDocsEnum ; + ; rdfs:label "contract administration" . a owl:Class, - MIXS:BuildDocsEnum ; + ; rdfs:label "cost estimate" . a owl:Class, - MIXS:BuildDocsEnum ; + ; rdfs:label "janitorial schedules or logs" . a owl:Class, - MIXS:BuildDocsEnum ; + ; rdfs:label "maintenance plans" . a owl:Class, - MIXS:BuildDocsEnum ; + ; rdfs:label "schedule" . a owl:Class, - MIXS:BuildDocsEnum ; + ; rdfs:label "sections" . a owl:Class, - MIXS:BuildDocsEnum ; + ; rdfs:label "shop drawings" . a owl:Class, - MIXS:BuildDocsEnum ; + ; rdfs:label "submittals" . a owl:Class, - MIXS:BuildDocsEnum ; + ; rdfs:label "ventilation system" . a owl:Class, - MIXS:BuildDocsEnum ; + ; rdfs:label "windows" . a owl:Class, - MIXS:BuildOccupTypeEnum ; + ; rdfs:label "airport" . a owl:Class, - MIXS:BuildOccupTypeEnum ; + ; rdfs:label "commercial" . a owl:Class, - MIXS:BuildOccupTypeEnum ; + ; rdfs:label "health care" . a owl:Class, - MIXS:BuildOccupTypeEnum ; + ; rdfs:label "high rise" . a owl:Class, - MIXS:BuildOccupTypeEnum ; + ; rdfs:label "low rise" . a owl:Class, - MIXS:BuildOccupTypeEnum ; + ; rdfs:label "market" . a owl:Class, - MIXS:BuildOccupTypeEnum ; + ; rdfs:label "office" . a owl:Class, - MIXS:BuildOccupTypeEnum ; + ; rdfs:label "residence" . a owl:Class, - MIXS:BuildOccupTypeEnum ; + ; rdfs:label "residential" . a owl:Class, - MIXS:BuildOccupTypeEnum ; + ; rdfs:label "restaurant" . a owl:Class, - MIXS:BuildOccupTypeEnum ; + ; rdfs:label "school" . a owl:Class, - MIXS:BuildOccupTypeEnum ; + ; rdfs:label "sports complex" . a owl:Class, - MIXS:BuildOccupTypeEnum ; + ; rdfs:label "wood framed" . a owl:Class, - MIXS:BuildingSettingEnum ; + ; rdfs:label "exurban" . a owl:Class, - MIXS:BuildingSettingEnum ; + ; rdfs:label "rural" . a owl:Class, - MIXS:BuildingSettingEnum ; + ; rdfs:label "suburban" . a owl:Class, - MIXS:BuildingSettingEnum ; + ; rdfs:label "urban" . a owl:Class, - MIXS:CeilCondEnum ; + ; rdfs:label "damaged" . a owl:Class, - MIXS:CeilCondEnum ; + ; rdfs:label "needs repair" . a owl:Class, - MIXS:CeilCondEnum ; + ; rdfs:label "new" . a owl:Class, - MIXS:CeilCondEnum ; + ; rdfs:label "rupture" . a owl:Class, - MIXS:CeilCondEnum ; + ; rdfs:label "visible wear" . a owl:Class, - MIXS:CeilFinishMatEnum ; + ; rdfs:label "PVC" . a owl:Class, - MIXS:CeilFinishMatEnum ; + ; rdfs:label "drywall" . a owl:Class, - MIXS:CeilFinishMatEnum ; + ; rdfs:label "fiberglass" . a owl:Class, - MIXS:CeilFinishMatEnum ; + ; rdfs:label "metal" . a owl:Class, - MIXS:CeilFinishMatEnum ; + ; rdfs:label "mineral fibre" . a owl:Class, - MIXS:CeilFinishMatEnum ; + ; rdfs:label "mineral wool/calcium silicate" . a owl:Class, - MIXS:CeilFinishMatEnum ; + ; rdfs:label "plasterboard" . a owl:Class, - MIXS:CeilFinishMatEnum ; + ; rdfs:label "stucco" . a owl:Class, - MIXS:CeilFinishMatEnum ; + ; rdfs:label "tiles" . a owl:Class, - MIXS:CeilFinishMatEnum ; + ; rdfs:label "wood" . a owl:Class, - MIXS:CeilTextureEnum ; + ; rdfs:label "Santa-Fe texture" . a owl:Class, - MIXS:CeilTextureEnum ; + ; rdfs:label "crows feet" . a owl:Class, - MIXS:CeilTextureEnum ; + ; rdfs:label "crows-foot stomp" . a owl:Class, - MIXS:CeilTextureEnum ; + ; rdfs:label "double skip" . a owl:Class, - MIXS:CeilTextureEnum ; + ; rdfs:label "hawk and trowel" . a owl:Class, - MIXS:CeilTextureEnum ; + ; rdfs:label "knockdown" . a owl:Class, - MIXS:CeilTextureEnum ; + ; rdfs:label "orange peel" . a owl:Class, - MIXS:CeilTextureEnum ; + ; rdfs:label "popcorn" . a owl:Class, - MIXS:CeilTextureEnum ; + ; rdfs:label "rosebud stomp" . a owl:Class, - MIXS:CeilTextureEnum ; + ; rdfs:label "skip trowel" . a owl:Class, - MIXS:CeilTextureEnum ; + ; rdfs:label "smooth" . a owl:Class, - MIXS:CeilTextureEnum ; + ; rdfs:label "stomp knockdown" . a owl:Class, - MIXS:CeilTextureEnum ; + ; rdfs:label "swirl" . a owl:Class, - MIXS:CeilTypeEnum ; + ; rdfs:label "barrel-shaped" . a owl:Class, - MIXS:CeilTypeEnum ; + ; rdfs:label "cathedral" . a owl:Class, - MIXS:CeilTypeEnum ; + ; rdfs:label "coffered" . a owl:Class, - MIXS:CeilTypeEnum ; + ; rdfs:label "concave" . a owl:Class, - MIXS:CeilTypeEnum ; + ; rdfs:label "cove" . a owl:Class, - MIXS:CeilTypeEnum ; + ; rdfs:label "dropped" . a owl:Class, - MIXS:CeilTypeEnum ; + ; rdfs:label "stretched" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "badlands" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "cities" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "conifers (e.g. pine,spruce,fir,cypress)" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "crop trees (nuts,fruit,christmas trees,nursery trees)" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "farmstead" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "gravel" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "hardwoods (e.g. oak,hickory,elm,aspen)" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "hayland" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "horticultural plants (e.g. tulips)" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "industrial areas" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "intermixed hardwood and conifers" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "marshlands (grass,sedges,rushes)" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "meadows (grasses,alfalfa,fescue,bromegrass,timothy)" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "mines/quarries" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "mudflats" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "oil waste areas" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "pastureland (grasslands used for livestock grazing)" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "permanent snow or ice" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "rainforest (evergreen forest receiving greater than 406 cm annual rainfall)" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "rangeland" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "roads/railroads" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "rock" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "row crops" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "saline seeps" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "salt flats" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "sand" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "shrub crops (blueberries,nursery ornamentals,filberts)" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus)" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "small grains" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries)" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "swamp (permanent or semi-permanent water body dominated by woody plants)" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "tropical (e.g. mangrove,palms)" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "tundra (mosses,lichens)" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "vegetable crops" . a owl:Class, - MIXS:CurLandUseEnum ; + ; rdfs:label "vine crops (grapes)" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "Continental - Aeolian" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "Continental - Alluvial" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "Continental - Fluvial" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "Continental - Lacustrine" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "Marine - Deep" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "Marine - Reef" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "Marine - Shallow" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "Other - Evaporite" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "Other - Glacial" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "Other - Volcanic" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "Transitional - Beach" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "Transitional - Deltaic" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "Transitional - Lagoonal" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "Transitional - Lake" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "Transitional - Tidal" . a owl:Class, - MIXS:DeposEnvEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:DoorCompTypeEnum ; + ; rdfs:label "metal covered" . a owl:Class, - MIXS:DoorCompTypeEnum ; + ; rdfs:label "revolving" . a owl:Class, - MIXS:DoorCompTypeEnum ; + ; rdfs:label "sliding" . a owl:Class, - MIXS:DoorCompTypeEnum ; + ; rdfs:label "telescopic" . a owl:Class, - MIXS:DoorCondEnum ; + ; rdfs:label "damaged" . a owl:Class, - MIXS:DoorCondEnum ; + ; rdfs:label "needs repair" . a owl:Class, - MIXS:DoorCondEnum ; + ; rdfs:label "new" . a owl:Class, - MIXS:DoorCondEnum ; + ; rdfs:label "rupture" . a owl:Class, - MIXS:DoorCondEnum ; + ; rdfs:label "visible wear" . a owl:Class, - MIXS:DoorDirectEnum ; + ; rdfs:label "inward" . a owl:Class, - MIXS:DoorDirectEnum ; + ; rdfs:label "outward" . a owl:Class, - MIXS:DoorDirectEnum ; + ; rdfs:label "sideways" . a owl:Class, - MIXS:DoorLocEnum ; + ; rdfs:label "east" . a owl:Class, - MIXS:DoorLocEnum ; + ; rdfs:label "north" . a owl:Class, - MIXS:DoorLocEnum ; + ; rdfs:label "south" . a owl:Class, - MIXS:DoorLocEnum ; + ; rdfs:label "west" . a owl:Class, - MIXS:DoorMatEnum ; + ; rdfs:label "aluminum" . a owl:Class, - MIXS:DoorMatEnum ; + ; rdfs:label "cellular PVC" . a owl:Class, - MIXS:DoorMatEnum ; + ; rdfs:label "engineered plastic" . a owl:Class, - MIXS:DoorMatEnum ; + ; rdfs:label "fiberboard" . a owl:Class, - MIXS:DoorMatEnum ; + ; rdfs:label "fiberglass" . a owl:Class, - MIXS:DoorMatEnum ; + ; rdfs:label "metal" . a owl:Class, - MIXS:DoorMatEnum ; + ; rdfs:label "thermoplastic alloy" . a owl:Class, - MIXS:DoorMatEnum ; + ; rdfs:label "vinyl" . a owl:Class, - MIXS:DoorMatEnum ; + ; rdfs:label "wood" . a owl:Class, - MIXS:DoorMatEnum ; + ; rdfs:label "wood/plastic composite" . a owl:Class, - MIXS:DoorMoveEnum ; + ; rdfs:label "collapsible" . a owl:Class, - MIXS:DoorMoveEnum ; + ; rdfs:label "folding" . a owl:Class, - MIXS:DoorMoveEnum ; + ; rdfs:label "revolving" . a owl:Class, - MIXS:DoorMoveEnum ; + ; rdfs:label "rolling shutter" . a owl:Class, - MIXS:DoorMoveEnum ; + ; rdfs:label "sliding" . a owl:Class, - MIXS:DoorMoveEnum ; + ; rdfs:label "swinging" . a owl:Class, - MIXS:DoorTypeEnum ; + ; rdfs:label "composite" . a owl:Class, - MIXS:DoorTypeEnum ; + ; rdfs:label "metal" . a owl:Class, - MIXS:DoorTypeEnum ; + ; rdfs:label "wooden" . a owl:Class, - MIXS:DoorTypeMetalEnum ; + ; rdfs:label "collapsible" . a owl:Class, - MIXS:DoorTypeMetalEnum ; + ; rdfs:label "corrugated steel" . a owl:Class, - MIXS:DoorTypeMetalEnum ; + ; rdfs:label "hollow" . a owl:Class, - MIXS:DoorTypeMetalEnum ; + ; rdfs:label "rolling shutters" . a owl:Class, - MIXS:DoorTypeMetalEnum ; + ; rdfs:label "steel plate" . a owl:Class, - MIXS:DoorTypeWoodEnum ; + ; rdfs:label "battened" . a owl:Class, - MIXS:DoorTypeWoodEnum ; + ; rdfs:label "bettened and ledged" . a owl:Class, - MIXS:DoorTypeWoodEnum ; + ; rdfs:label "flush" . a owl:Class, - MIXS:DoorTypeWoodEnum ; + ; rdfs:label "framed and paneled" . a owl:Class, - MIXS:DoorTypeWoodEnum ; + ; rdfs:label "glashed or sash" . a owl:Class, - MIXS:DoorTypeWoodEnum ; + ; rdfs:label "ledged and braced" . a owl:Class, - MIXS:DoorTypeWoodEnum ; + ; rdfs:label "ledged and framed" . a owl:Class, - MIXS:DoorTypeWoodEnum ; + ; rdfs:label "ledged, braced and frame" . a owl:Class, - MIXS:DoorTypeWoodEnum ; + ; rdfs:label "louvered" . a owl:Class, - MIXS:DoorTypeWoodEnum ; + ; rdfs:label "wire gauged" . a owl:Class, - MIXS:DrainageClassEnum ; + ; rdfs:label "excessively drained" . a owl:Class, - MIXS:DrainageClassEnum ; + ; rdfs:label "moderately well" . a owl:Class, - MIXS:DrainageClassEnum ; + ; rdfs:label "poorly" . a owl:Class, - MIXS:DrainageClassEnum ; + ; rdfs:label "somewhat poorly" . a owl:Class, - MIXS:DrainageClassEnum ; + ; rdfs:label "very poorly" . a owl:Class, - MIXS:DrainageClassEnum ; + ; rdfs:label "well" . a owl:Class, - MIXS:DrawingsEnum ; + ; rdfs:label "as built" . a owl:Class, - MIXS:DrawingsEnum ; + ; rdfs:label "bid" . a owl:Class, - MIXS:DrawingsEnum ; + ; rdfs:label "building navigation map" . a owl:Class, - MIXS:DrawingsEnum ; + ; rdfs:label "construction" . a owl:Class, - MIXS:DrawingsEnum ; + ; rdfs:label "design" . a owl:Class, - MIXS:DrawingsEnum ; + ; rdfs:label "diagram" . a owl:Class, - MIXS:DrawingsEnum ; + ; rdfs:label "operation" . a owl:Class, - MIXS:DrawingsEnum ; + ; rdfs:label "sketch" . a owl:Class, - MIXS:ExtWallOrientEnum ; + ; rdfs:label "east" . a owl:Class, - MIXS:ExtWallOrientEnum ; + ; rdfs:label "north" . a owl:Class, - MIXS:ExtWallOrientEnum ; + ; rdfs:label "northeast" . a owl:Class, - MIXS:ExtWallOrientEnum ; + ; rdfs:label "northwest" . a owl:Class, - MIXS:ExtWallOrientEnum ; + ; rdfs:label "south" . a owl:Class, - MIXS:ExtWallOrientEnum ; + ; rdfs:label "southeast" . a owl:Class, - MIXS:ExtWallOrientEnum ; + ; rdfs:label "southwest" . a owl:Class, - MIXS:ExtWallOrientEnum ; + ; rdfs:label "west" . a owl:Class, - MIXS:ExtWindowOrientEnum ; + ; rdfs:label "east" . a owl:Class, - MIXS:ExtWindowOrientEnum ; + ; rdfs:label "north" . a owl:Class, - MIXS:ExtWindowOrientEnum ; + ; rdfs:label "northeast" . a owl:Class, - MIXS:ExtWindowOrientEnum ; + ; rdfs:label "northwest" . a owl:Class, - MIXS:ExtWindowOrientEnum ; + ; rdfs:label "south" . a owl:Class, - MIXS:ExtWindowOrientEnum ; + ; rdfs:label "southeast" . a owl:Class, - MIXS:ExtWindowOrientEnum ; + ; rdfs:label "southwest" . a owl:Class, - MIXS:ExtWindowOrientEnum ; + ; rdfs:label "west" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Acrisols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Andosols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Arenosols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Cambisols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Chernozems" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Ferralsols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Fluvisols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Gleysols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Greyzems" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Gypsisols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Histosols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Kastanozems" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Lithosols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Luvisols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Nitosols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Phaeozems" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Planosols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Podzols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Podzoluvisols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Rankers" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Regosols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Rendzinas" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Solonchaks" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Solonetz" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Vertisols" . a owl:Class, - MIXS:FaoClassEnum ; + ; rdfs:label "Yermosols" . a owl:Class, - MIXS:FilterTypeEnum ; + ; rdfs:label "HEPA" . a owl:Class, - MIXS:FilterTypeEnum ; + ; rdfs:label "chemical air filter" . a owl:Class, - MIXS:FilterTypeEnum ; + ; rdfs:label "electrostatic" . a owl:Class, - MIXS:FilterTypeEnum ; + ; rdfs:label "gas-phase or ultraviolet air treatments" . a owl:Class, - MIXS:FilterTypeEnum ; + ; rdfs:label "low-MERV pleated media" . a owl:Class, - MIXS:FilterTypeEnum ; + ; rdfs:label "particulate air filter" . a owl:Class, - MIXS:FloorCondEnum ; + ; rdfs:label "damaged" . a owl:Class, - MIXS:FloorCondEnum ; + ; rdfs:label "needs repair" . a owl:Class, - MIXS:FloorCondEnum ; + ; rdfs:label "new" . a owl:Class, - MIXS:FloorCondEnum ; + ; rdfs:label "rupture" . a owl:Class, - MIXS:FloorCondEnum ; + ; rdfs:label "visible wear" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "bamboo" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "carpet" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "clear finish" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "concrete" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "cork" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "laminate wood" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "lineoleum" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "none" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "none or unfinished" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "paint" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "rug" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "sealed" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "sheet vinyl" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "stone" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "terrazo" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "tile" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "vinyl composition tile" . a owl:Class, - MIXS:FloorFinishMatEnum ; + ; rdfs:label "wood strip or parquet" . a owl:Class, - MIXS:FloorStrucEnum ; + ; rdfs:label "balcony" . a owl:Class, - MIXS:FloorStrucEnum ; + ; rdfs:label "concrete" . a owl:Class, - MIXS:FloorStrucEnum ; + ; rdfs:label "floating floor" . a owl:Class, - MIXS:FloorStrucEnum ; + ; rdfs:label "glass floor" . a owl:Class, - MIXS:FloorStrucEnum ; + ; rdfs:label "raised floor" . a owl:Class, - MIXS:FloorStrucEnum ; + ; rdfs:label "sprung floor" . a owl:Class, - MIXS:FloorStrucEnum ; + ; rdfs:label "wood-framed" . a owl:Class, - MIXS:FloorWaterMoldEnum ; + ; rdfs:label "bulging walls" . a owl:Class, - MIXS:FloorWaterMoldEnum ; + ; rdfs:label "ceiling discoloration" . a owl:Class, - MIXS:FloorWaterMoldEnum ; + ; rdfs:label "condensation" . a owl:Class, - MIXS:FloorWaterMoldEnum ; + ; rdfs:label "floor discoloration" . a owl:Class, - MIXS:FloorWaterMoldEnum ; + ; rdfs:label "mold odor" . a owl:Class, - MIXS:FloorWaterMoldEnum ; + ; rdfs:label "peeling paint or wallpaper" . a owl:Class, - MIXS:FloorWaterMoldEnum ; + ; rdfs:label "wall discoloration" . a owl:Class, - MIXS:FloorWaterMoldEnum ; + ; rdfs:label "water stains" . a owl:Class, - MIXS:FloorWaterMoldEnum ; + ; rdfs:label "wet floor" . a owl:Class, - MIXS:FreqCleanEnum ; + ; rdfs:label "Annually" . a owl:Class, - MIXS:FreqCleanEnum ; + ; rdfs:label "Daily" . a owl:Class, - MIXS:FreqCleanEnum ; + ; rdfs:label "Monthly" . a owl:Class, - MIXS:FreqCleanEnum ; + ; rdfs:label "Quarterly" . a owl:Class, - MIXS:FreqCleanEnum ; + ; rdfs:label "Weekly" . a owl:Class, - MIXS:FreqCleanEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:FurnitureEnum ; + ; rdfs:label "cabinet" . a owl:Class, - MIXS:FurnitureEnum ; + ; rdfs:label "chair" . a owl:Class, - MIXS:FurnitureEnum ; + ; rdfs:label "desks" . a owl:Class, - MIXS:GenderRestroomEnum ; + ; rdfs:label "all gender" . a owl:Class, - MIXS:GenderRestroomEnum ; + ; rdfs:label "female" . a owl:Class, - MIXS:GenderRestroomEnum ; + ; rdfs:label "gender neurtral" . a owl:Class, - MIXS:GenderRestroomEnum ; + ; rdfs:label "male" . a owl:Class, - MIXS:GenderRestroomEnum ; + ; rdfs:label "male and female" . a owl:Class, - MIXS:GenderRestroomEnum ; + ; rdfs:label "unisex" . a owl:Class, - MIXS:GrowthHabitEnum ; + ; rdfs:label "erect" . a owl:Class, - MIXS:GrowthHabitEnum ; + ; rdfs:label "prostrate" . a owl:Class, - MIXS:GrowthHabitEnum ; + ; rdfs:label "semi-erect" . a owl:Class, - MIXS:GrowthHabitEnum ; + ; rdfs:label "spreading" . a owl:Class, - MIXS:HandidnessEnum ; + ; rdfs:label "ambidexterity" . a owl:Class, - MIXS:HandidnessEnum ; + ; rdfs:label "left handedness" . a owl:Class, - MIXS:HandidnessEnum ; + ; rdfs:label "mixed-handedness" . a owl:Class, - MIXS:HandidnessEnum ; + ; rdfs:label "right handedness" . a owl:Class, - MIXS:HcProducedEnum ; + ; rdfs:label "Bitumen" . a owl:Class, - MIXS:HcProducedEnum ; + ; rdfs:label "Coalbed Methane" . a owl:Class, - MIXS:HcProducedEnum ; + ; rdfs:label "Gas" . a owl:Class, - MIXS:HcProducedEnum ; + ; rdfs:label "Gas-Condensate" . a owl:Class, - MIXS:HcProducedEnum ; + ; rdfs:label "Oil" . a owl:Class, - MIXS:HcProducedEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:HcrEnum ; + ; rdfs:label "Coalbed" . a owl:Class, - MIXS:HcrEnum ; + ; rdfs:label "Gas Reservoir" . a owl:Class, - MIXS:HcrEnum ; + ; rdfs:label "Oil Reservoir" . a owl:Class, - MIXS:HcrEnum ; + ; rdfs:label "Oil Sand" . a owl:Class, - MIXS:HcrEnum ; + ; rdfs:label "Shale" . a owl:Class, - MIXS:HcrEnum ; + ; rdfs:label "Tight Gas Reservoir" . a owl:Class, - MIXS:HcrEnum ; + ; rdfs:label "Tight Oil Reservoir" . a owl:Class, - MIXS:HcrEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Archean" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Cambrian" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Carboniferous" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Cenozoic" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Cretaceous" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Devonian" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Jurassic" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Mesozoic" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Neogene" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Ordovician" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Paleogene" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Paleozoic" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Permian" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Precambrian" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Proterozoic" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Silurian" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "Triassic" . a owl:Class, - MIXS:HcrGeolAgeEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:HeatCoolTypeEnum ; + ; rdfs:label "forced air system" . a owl:Class, - MIXS:HeatCoolTypeEnum ; + ; rdfs:label "heat pump" . a owl:Class, - MIXS:HeatCoolTypeEnum ; + ; rdfs:label "radiant system" . a owl:Class, - MIXS:HeatCoolTypeEnum ; + ; rdfs:label "steam forced heat" . a owl:Class, - MIXS:HeatCoolTypeEnum ; + ; rdfs:label "wood stove" . a owl:Class, - MIXS:HeatDelivLocEnum ; + ; rdfs:label "east" . a owl:Class, - MIXS:HeatDelivLocEnum ; + ; rdfs:label "north" . a owl:Class, - MIXS:HeatDelivLocEnum ; + ; rdfs:label "south" . a owl:Class, - MIXS:HeatDelivLocEnum ; + ; rdfs:label "west" . a owl:Class, - MIXS:HostSexEnum ; + ; rdfs:label "female" . a owl:Class, - MIXS:HostSexEnum ; + ; rdfs:label "hermaphrodite" . a owl:Class, - MIXS:HostSexEnum ; + ; rdfs:label "male" . a owl:Class, - MIXS:HostSexEnum ; + ; rdfs:label "neuter" . a owl:Class, - MIXS:IndoorSpaceEnum ; + ; rdfs:label "bathroom" . a owl:Class, - MIXS:IndoorSpaceEnum ; + ; rdfs:label "bedroom" . a owl:Class, - MIXS:IndoorSpaceEnum ; + ; rdfs:label "elevator" . a owl:Class, - MIXS:IndoorSpaceEnum ; + ; rdfs:label "foyer" . a owl:Class, - MIXS:IndoorSpaceEnum ; + ; rdfs:label "hallway" . a owl:Class, - MIXS:IndoorSpaceEnum ; + ; rdfs:label "kitchen" . a owl:Class, - MIXS:IndoorSpaceEnum ; + ; rdfs:label "locker room" . a owl:Class, - MIXS:IndoorSpaceEnum ; + ; rdfs:label "office" . a owl:Class, - MIXS:IndoorSurfEnum ; + ; rdfs:label "cabinet" . a owl:Class, - MIXS:IndoorSurfEnum ; + ; rdfs:label "ceiling" . a owl:Class, - MIXS:IndoorSurfEnum ; + ; rdfs:label "counter top" . a owl:Class, - MIXS:IndoorSurfEnum ; + ; rdfs:label "door" . a owl:Class, - MIXS:IndoorSurfEnum ; + ; rdfs:label "shelving" . a owl:Class, - MIXS:IndoorSurfEnum ; + ; rdfs:label "vent cover" . a owl:Class, - MIXS:IndoorSurfEnum ; + ; rdfs:label "wall" . a owl:Class, - MIXS:IndoorSurfEnum ; + ; rdfs:label "window" . a owl:Class, - MIXS:IntWallCondEnum ; + ; rdfs:label "damaged" . a owl:Class, - MIXS:IntWallCondEnum ; + ; rdfs:label "needs repair" . a owl:Class, - MIXS:IntWallCondEnum ; + ; rdfs:label "new" . a owl:Class, - MIXS:IntWallCondEnum ; + ; rdfs:label "rupture" . a owl:Class, - MIXS:IntWallCondEnum ; + ; rdfs:label "visible wear" . a owl:Class, - MIXS:LightTypeEnum ; + ; rdfs:label "desk lamp" . a owl:Class, - MIXS:LightTypeEnum ; + ; rdfs:label "electric light" . a owl:Class, - MIXS:LightTypeEnum ; + ; rdfs:label "flourescent lights" . a owl:Class, - MIXS:LightTypeEnum ; + ; rdfs:label "natural light" . a owl:Class, - MIXS:LightTypeEnum ; + ; rdfs:label "none" . a owl:Class, - MIXS:LithologyEnum ; + ; rdfs:label "Basement" . a owl:Class, - MIXS:LithologyEnum ; + ; rdfs:label "Chalk" . a owl:Class, - MIXS:LithologyEnum ; + ; rdfs:label "Chert" . a owl:Class, - MIXS:LithologyEnum ; + ; rdfs:label "Coal" . a owl:Class, - MIXS:LithologyEnum ; + ; rdfs:label "Conglomerate" . a owl:Class, - MIXS:LithologyEnum ; + ; rdfs:label "Diatomite" . a owl:Class, - MIXS:LithologyEnum ; + ; rdfs:label "Dolomite" . a owl:Class, - MIXS:LithologyEnum ; + ; rdfs:label "Limestone" . a owl:Class, - MIXS:LithologyEnum ; + ; rdfs:label "Sandstone" . a owl:Class, - MIXS:LithologyEnum ; + ; rdfs:label "Shale" . a owl:Class, - MIXS:LithologyEnum ; + ; rdfs:label "Siltstone" . a owl:Class, - MIXS:LithologyEnum ; + ; rdfs:label "Volcanic" . a owl:Class, - MIXS:LithologyEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:MechStrucEnum ; + ; rdfs:label "boat" . a owl:Class, - MIXS:MechStrucEnum ; + ; rdfs:label "bus" . a owl:Class, - MIXS:MechStrucEnum ; + ; rdfs:label "car" . a owl:Class, - MIXS:MechStrucEnum ; + ; rdfs:label "carriage" . a owl:Class, - MIXS:MechStrucEnum ; + ; rdfs:label "coach" . a owl:Class, - MIXS:MechStrucEnum ; + ; rdfs:label "elevator" . a owl:Class, - MIXS:MechStrucEnum ; + ; rdfs:label "escalator" . a owl:Class, - MIXS:MechStrucEnum ; + ; rdfs:label "subway" . a owl:Class, - MIXS:MechStrucEnum ; + ; rdfs:label "train" . a owl:Class, - MIXS:OccupDocumentEnum ; + ; rdfs:label "automated count" . a owl:Class, - MIXS:OccupDocumentEnum ; + ; rdfs:label "estimate" . a owl:Class, - MIXS:OccupDocumentEnum ; + ; rdfs:label "manual count" . a owl:Class, - MIXS:OccupDocumentEnum ; + ; rdfs:label "videos" . a owl:Class, - MIXS:OrganismCountEnum ; + ; rdfs:label "ATP" . a owl:Class, - MIXS:OrganismCountEnum ; + ; rdfs:label "MPN" . a owl:Class, - MIXS:OrganismCountEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:OxyStatSampEnum ; + ; rdfs:label "aerobic" . a owl:Class, - MIXS:OxyStatSampEnum ; + ; rdfs:label "anaerobic" . a owl:Class, - MIXS:OxyStatSampEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:PlantGrowthMedEnum ; + ; rdfs:label "other artificial liquid medium" . a owl:Class, - MIXS:PlantGrowthMedEnum ; + ; rdfs:label "other artificial solid medium" . a owl:Class, - MIXS:PlantGrowthMedEnum ; + ; rdfs:label "peat moss" . a owl:Class, - MIXS:PlantGrowthMedEnum ; + ; rdfs:label "perlite" . a owl:Class, - MIXS:PlantGrowthMedEnum ; + ; rdfs:label "pumice" . a owl:Class, - MIXS:PlantGrowthMedEnum ; + ; rdfs:label "sand" . a owl:Class, - MIXS:PlantGrowthMedEnum ; + ; rdfs:label "soil" . a owl:Class, - MIXS:PlantGrowthMedEnum ; + ; rdfs:label "vermiculite" . a owl:Class, - MIXS:PlantGrowthMedEnum ; + ; rdfs:label "water" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Androdioecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Androecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Androgynomonoecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Androgynous" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Andromonoecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Bisexual" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Dichogamous" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Diclinous" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Dioecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Gynodioecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Gynoecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Gynomonoecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Hermaphroditic" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Imperfect" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Monoclinous" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Monoecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Perfect" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Polygamodioecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Polygamomonoecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Polygamous" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Protandrous" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Protogynous" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Subandroecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Subdioecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Subgynoecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Synoecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Trimonoecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Trioecious" . a owl:Class, - MIXS:PlantSexEnum ; + ; rdfs:label "Unisexual" . a owl:Class, - MIXS:ProfilePositionEnum ; + ; rdfs:label "backslope" . a owl:Class, - MIXS:ProfilePositionEnum ; + ; rdfs:label "footslope" . a owl:Class, - MIXS:ProfilePositionEnum ; + ; rdfs:label "shoulder" . a owl:Class, - MIXS:ProfilePositionEnum ; + ; rdfs:label "summit" . a owl:Class, - MIXS:ProfilePositionEnum ; + ; rdfs:label "toeslope" . a owl:Class, - MIXS:QuadPosEnum ; + ; rdfs:label "East side" . a owl:Class, - MIXS:QuadPosEnum ; + ; rdfs:label "North side" . a owl:Class, - MIXS:QuadPosEnum ; + ; rdfs:label "South side" . a owl:Class, - MIXS:QuadPosEnum ; + ; rdfs:label "West side" . a owl:Class, - MIXS:RelSampLocEnum ; + ; rdfs:label "center of car" . a owl:Class, - MIXS:RelSampLocEnum ; + ; rdfs:label "edge of car" . a owl:Class, - MIXS:RelSampLocEnum ; + ; rdfs:label "under a seat" . a owl:Class, - MIXS:RelToOxygenEnum ; + ; rdfs:label "aerobe" . a owl:Class, - MIXS:RelToOxygenEnum ; + ; rdfs:label "anaerobe" . a owl:Class, - MIXS:RelToOxygenEnum ; + ; rdfs:label "facultative" . a owl:Class, - MIXS:RelToOxygenEnum ; + ; rdfs:label "microaerophilic" . a owl:Class, - MIXS:RelToOxygenEnum ; + ; rdfs:label "microanaerobe" . a owl:Class, - MIXS:RelToOxygenEnum ; + ; rdfs:label "obligate aerobe" . a owl:Class, - MIXS:RelToOxygenEnum ; + ; rdfs:label "obligate anaerobe" . a owl:Class, - MIXS:RoomCondtEnum ; + ; rdfs:label "damaged" . a owl:Class, - MIXS:RoomCondtEnum ; + ; rdfs:label "needs repair" . a owl:Class, - MIXS:RoomCondtEnum ; + ; rdfs:label "new" . a owl:Class, - MIXS:RoomCondtEnum ; + ; rdfs:label "rupture" . a owl:Class, - MIXS:RoomCondtEnum ; + ; rdfs:label "visible signs of mold/mildew" . a owl:Class, - MIXS:RoomCondtEnum ; + ; rdfs:label "visible wear" . a owl:Class, - MIXS:RoomConnectedEnum ; + ; rdfs:label "attic" . a owl:Class, - MIXS:RoomConnectedEnum ; + ; rdfs:label "bathroom" . a owl:Class, - MIXS:RoomConnectedEnum ; + ; rdfs:label "closet" . a owl:Class, - MIXS:RoomConnectedEnum ; + ; rdfs:label "conference room" . a owl:Class, - MIXS:RoomConnectedEnum ; + ; rdfs:label "elevator" . a owl:Class, - MIXS:RoomConnectedEnum ; + ; rdfs:label "examining room" . a owl:Class, - MIXS:RoomConnectedEnum ; + ; rdfs:label "hallway" . a owl:Class, - MIXS:RoomConnectedEnum ; + ; rdfs:label "kitchen" . a owl:Class, - MIXS:RoomConnectedEnum ; + ; rdfs:label "mail room" . a owl:Class, - MIXS:RoomConnectedEnum ; + ; rdfs:label "office" . a owl:Class, - MIXS:RoomConnectedEnum ; + ; rdfs:label "stairwell" . a owl:Class, - MIXS:RoomLocEnum ; + ; rdfs:label "corner room" . a owl:Class, - MIXS:RoomLocEnum ; + ; rdfs:label "exterior wall" . a owl:Class, - MIXS:RoomLocEnum ; + ; rdfs:label "interior room" . a owl:Class, - MIXS:RoomSampPosEnum ; + ; rdfs:label "center" . a owl:Class, - MIXS:RoomSampPosEnum ; + ; rdfs:label "east corner" . a owl:Class, - MIXS:RoomSampPosEnum ; + ; rdfs:label "north corner" . a owl:Class, - MIXS:RoomSampPosEnum ; + ; rdfs:label "northeast corner" . a owl:Class, - MIXS:RoomSampPosEnum ; + ; rdfs:label "northwest corner" . a owl:Class, - MIXS:RoomSampPosEnum ; + ; rdfs:label "south corner" . a owl:Class, - MIXS:RoomSampPosEnum ; + ; rdfs:label "southeast corner" . a owl:Class, - MIXS:RoomSampPosEnum ; + ; rdfs:label "southwest corner" . a owl:Class, - MIXS:RoomSampPosEnum ; + ; rdfs:label "west corner" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label ",restroom" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "attic" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "auditorium" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "bathroom" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "cafe" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "closet" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "conference room" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "data center" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "elevator" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "examining room" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "gymnasium" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "hallway" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "kitchen" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "laboratory_dry" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "laboratory_wet" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "lobby" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "lockers" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "mail room" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "mechanical or electrical room" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "natatorium" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "open office" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "private office" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "stairwell" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "vestibule" . a owl:Class, - MIXS:RoomTypeEnum ; + ; rdfs:label "warehouse" . a owl:Class, - MIXS:SampCaptStatusEnum ; + ; rdfs:label "active surveillance in response to an outbreak" . a owl:Class, - MIXS:SampCaptStatusEnum ; + ; rdfs:label "active surveillance not initiated by an outbreak" . a owl:Class, - MIXS:SampCaptStatusEnum ; + ; rdfs:label "farm sample" . a owl:Class, - MIXS:SampCaptStatusEnum ; + ; rdfs:label "market sample" . a owl:Class, - MIXS:SampCaptStatusEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:SampCollectPointEnum ; + ; rdfs:label "drilling rig" . a owl:Class, - MIXS:SampCollectPointEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:SampCollectPointEnum ; + ; rdfs:label "separator" . a owl:Class, - MIXS:SampCollectPointEnum ; + ; rdfs:label "storage tank" . a owl:Class, - MIXS:SampCollectPointEnum ; + ; rdfs:label "test well" . a owl:Class, - MIXS:SampCollectPointEnum ; + ; rdfs:label "well" . a owl:Class, - MIXS:SampCollectPointEnum ; + ; rdfs:label "wellhead" . a owl:Class, - MIXS:SampDisStageEnum ; + ; rdfs:label "dissemination" . a owl:Class, - MIXS:SampDisStageEnum ; + ; rdfs:label "growth and reproduction" . a owl:Class, - MIXS:SampDisStageEnum ; + ; rdfs:label "infection" . a owl:Class, - MIXS:SampDisStageEnum ; + ; rdfs:label "inoculation" . a owl:Class, - MIXS:SampDisStageEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:SampDisStageEnum ; + ; rdfs:label "penetration" . a owl:Class, - MIXS:SampFloorEnum ; + ; rdfs:label "1st floor" . a owl:Class, - MIXS:SampFloorEnum ; + ; rdfs:label "2nd floor" . a owl:Class, - MIXS:SampFloorEnum ; + ; rdfs:label "basement" . a owl:Class, - MIXS:SampFloorEnum ; + ; rdfs:label "lobby" . a owl:Class, - MIXS:SampMdEnum ; + ; rdfs:label "DF" . a owl:Class, - MIXS:SampMdEnum ; + ; rdfs:label "KB" . a owl:Class, - MIXS:SampMdEnum ; + ; rdfs:label "MSL" . a owl:Class, - MIXS:SampMdEnum ; + ; rdfs:label "RT" . a owl:Class, - MIXS:SampMdEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:SampSubtypeEnum ; + ; rdfs:label "biofilm" . a owl:Class, - MIXS:SampSubtypeEnum ; + ; rdfs:label "not applicable" . a owl:Class, - MIXS:SampSubtypeEnum ; + ; rdfs:label "oil phase" . a owl:Class, - MIXS:SampSubtypeEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:SampSubtypeEnum ; + ; rdfs:label "water phase" . a owl:Class, - MIXS:SampWeatherEnum ; + ; rdfs:label "clear sky" . a owl:Class, - MIXS:SampWeatherEnum ; + ; rdfs:label "cloudy" . a owl:Class, - MIXS:SampWeatherEnum ; + ; rdfs:label "foggy" . a owl:Class, - MIXS:SampWeatherEnum ; + ; rdfs:label "hail" . a owl:Class, - MIXS:SampWeatherEnum ; + ; rdfs:label "rain" . a owl:Class, - MIXS:SampWeatherEnum ; + ; rdfs:label "sleet" . a owl:Class, - MIXS:SampWeatherEnum ; + ; rdfs:label "snow" . a owl:Class, - MIXS:SampWeatherEnum ; + ; rdfs:label "sunny" . a owl:Class, - MIXS:SampWeatherEnum ; + ; rdfs:label "windy" . a owl:Class, - MIXS:SeasonUseEnum ; + ; rdfs:label "Fall" . a owl:Class, - MIXS:SeasonUseEnum ; + ; rdfs:label "Spring" . a owl:Class, - MIXS:SeasonUseEnum ; + ; rdfs:label "Summer" . a owl:Class, - MIXS:SeasonUseEnum ; + ; rdfs:label "Winter" . a owl:Class, - MIXS:SedimentTypeEnum ; + ; rdfs:label "biogenous" . a owl:Class, - MIXS:SedimentTypeEnum ; + ; rdfs:label "cosmogenous" . a owl:Class, - MIXS:SedimentTypeEnum ; + ; rdfs:label "hydrogenous" . a owl:Class, - MIXS:SedimentTypeEnum ; + ; rdfs:label "lithogenous" . a owl:Class, - MIXS:ShadingDeviceCondEnum ; + ; rdfs:label "damaged" . a owl:Class, - MIXS:ShadingDeviceCondEnum ; + ; rdfs:label "needs repair" . a owl:Class, - MIXS:ShadingDeviceCondEnum ; + ; rdfs:label "new" . a owl:Class, - MIXS:ShadingDeviceCondEnum ; + ; rdfs:label "rupture" . a owl:Class, - MIXS:ShadingDeviceCondEnum ; + ; rdfs:label "visible wear" . a owl:Class, - MIXS:ShadingDeviceTypeEnum ; + ; rdfs:label "bahama shutters" . a owl:Class, - MIXS:ShadingDeviceTypeEnum ; + ; rdfs:label "exterior roll blind" . a owl:Class, - MIXS:ShadingDeviceTypeEnum ; + ; rdfs:label "gambrel awning" . a owl:Class, - MIXS:ShadingDeviceTypeEnum ; + ; rdfs:label "hood awning" . a owl:Class, - MIXS:ShadingDeviceTypeEnum ; + ; rdfs:label "porchroller awning" . a owl:Class, - MIXS:ShadingDeviceTypeEnum ; + ; rdfs:label "sarasota shutters" . a owl:Class, - MIXS:ShadingDeviceTypeEnum ; + ; rdfs:label "slatted aluminum" . a owl:Class, - MIXS:ShadingDeviceTypeEnum ; + ; rdfs:label "solid aluminum awning" . a owl:Class, - MIXS:ShadingDeviceTypeEnum ; + ; rdfs:label "sun screen" . a owl:Class, - MIXS:ShadingDeviceTypeEnum ; + ; rdfs:label "tree" . a owl:Class, - MIXS:ShadingDeviceTypeEnum ; + ; rdfs:label "trellis" . a owl:Class, - MIXS:ShadingDeviceTypeEnum ; + ; rdfs:label "venetian awning" . a owl:Class, - MIXS:SoilHorizonEnum ; + ; rdfs:label "A horizon" . a owl:Class, - MIXS:SoilHorizonEnum ; + ; rdfs:label "B horizon" . a owl:Class, - MIXS:SoilHorizonEnum ; + ; rdfs:label "C horizon" . a owl:Class, - MIXS:SoilHorizonEnum ; + ; rdfs:label "E horizon" . a owl:Class, - MIXS:SoilHorizonEnum ; + ; rdfs:label "O horizon" . a owl:Class, - MIXS:SoilHorizonEnum ; + ; rdfs:label "Permafrost" . a owl:Class, - MIXS:SoilHorizonEnum ; + ; rdfs:label "R layer" . a owl:Class, - MIXS:SpecificEnum ; + ; rdfs:label "as built" . a owl:Class, - MIXS:SpecificEnum ; + ; rdfs:label "bid" . a owl:Class, - MIXS:SpecificEnum ; + ; rdfs:label "construction" . a owl:Class, - MIXS:SpecificEnum ; + ; rdfs:label "design" . a owl:Class, - MIXS:SpecificEnum ; + ; rdfs:label "operation" . a owl:Class, - MIXS:SpecificEnum ; + ; rdfs:label "photos" . a owl:Class, - MIXS:SrDepEnvEnum ; + ; rdfs:label "Fluvioldeltaic" . a owl:Class, - MIXS:SrDepEnvEnum ; + ; rdfs:label "Fluviomarine" . a owl:Class, - MIXS:SrDepEnvEnum ; + ; rdfs:label "Lacustine" . a owl:Class, - MIXS:SrDepEnvEnum ; + ; rdfs:label "Marine" . a owl:Class, - MIXS:SrDepEnvEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Archean" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Cambrian" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Carboniferous" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Cenozoic" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Cretaceous" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Devonian" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Jurassic" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Mesozoic" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Neogene" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Ordovician" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Paleogene" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Paleozoic" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Permian" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Precambrian" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Proterozoic" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Silurian" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "Triassic" . a owl:Class, - MIXS:SrGeolAgeEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:SrKerogTypeEnum ; + ; rdfs:label "Type I" . a owl:Class, - MIXS:SrKerogTypeEnum ; + ; rdfs:label "Type II" . a owl:Class, - MIXS:SrKerogTypeEnum ; + ; rdfs:label "Type III" . a owl:Class, - MIXS:SrKerogTypeEnum ; + ; rdfs:label "Type IV" . a owl:Class, - MIXS:SrKerogTypeEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:SrLithologyEnum ; + ; rdfs:label "Biosilicieous" . a owl:Class, - MIXS:SrLithologyEnum ; + ; rdfs:label "Carbonate" . a owl:Class, - MIXS:SrLithologyEnum ; + ; rdfs:label "Clastic" . a owl:Class, - MIXS:SrLithologyEnum ; + ; rdfs:label "Coal" . a owl:Class, - MIXS:SrLithologyEnum ; + ; rdfs:label "other" . a owl:Class, - MIXS:SubstructureTypeEnum ; + ; rdfs:label "basement" . a owl:Class, - MIXS:SubstructureTypeEnum ; + ; rdfs:label "crawlspace" . a owl:Class, - MIXS:SubstructureTypeEnum ; + ; rdfs:label "slab on grade" . a owl:Class, - MIXS:SurfAirContEnum ; + ; rdfs:label "biocides" . a owl:Class, - MIXS:SurfAirContEnum ; + ; rdfs:label "biological contaminants" . a owl:Class, - MIXS:SurfAirContEnum ; + ; rdfs:label "dust" . a owl:Class, - MIXS:SurfAirContEnum ; + ; rdfs:label "nutrients" . a owl:Class, - MIXS:SurfAirContEnum ; + ; rdfs:label "organic matter" . a owl:Class, - MIXS:SurfAirContEnum ; + ; rdfs:label "particulate matter" . a owl:Class, - MIXS:SurfAirContEnum ; + ; rdfs:label "radon" . a owl:Class, - MIXS:SurfAirContEnum ; + ; rdfs:label "volatile organic compounds" . a owl:Class, - MIXS:SurfMaterialEnum ; + ; rdfs:label "adobe" . a owl:Class, - MIXS:SurfMaterialEnum ; + ; rdfs:label "carpet" . a owl:Class, - MIXS:SurfMaterialEnum ; + ; rdfs:label "cinder blocks" . a owl:Class, - MIXS:SurfMaterialEnum ; + ; rdfs:label "concrete" . a owl:Class, - MIXS:SurfMaterialEnum ; + ; rdfs:label "glass" . a owl:Class, - MIXS:SurfMaterialEnum ; + ; rdfs:label "hay bales" . a owl:Class, - MIXS:SurfMaterialEnum ; + ; rdfs:label "metal" . a owl:Class, - MIXS:SurfMaterialEnum ; + ; rdfs:label "paint" . a owl:Class, - MIXS:SurfMaterialEnum ; + ; rdfs:label "plastic" . a owl:Class, - MIXS:SurfMaterialEnum ; + ; rdfs:label "stainless steel" . a owl:Class, - MIXS:SurfMaterialEnum ; + ; rdfs:label "stone" . a owl:Class, - MIXS:SurfMaterialEnum ; + ; rdfs:label "stucco" . a owl:Class, - MIXS:SurfMaterialEnum ; + ; rdfs:label "tile" . a owl:Class, - MIXS:SurfMaterialEnum ; + ; rdfs:label "vinyl" . a owl:Class, - MIXS:SurfMaterialEnum ; + ; rdfs:label "wood" . a owl:Class, - MIXS:TidalStageEnum ; + ; rdfs:label "ebb tide" . a owl:Class, - MIXS:TidalStageEnum ; + ; rdfs:label "flood tide" . a owl:Class, - MIXS:TidalStageEnum ; + ; rdfs:label "high tide" . a owl:Class, - MIXS:TidalStageEnum ; + ; rdfs:label "low tide" . a owl:Class, - MIXS:TillageEnum ; + ; rdfs:label "chisel" . a owl:Class, - MIXS:TillageEnum ; + ; rdfs:label "cutting disc" . a owl:Class, - MIXS:TillageEnum ; + ; rdfs:label "disc plough" . a owl:Class, - MIXS:TillageEnum ; + ; rdfs:label "drill" . a owl:Class, - MIXS:TillageEnum ; + ; rdfs:label "mouldboard" . a owl:Class, - MIXS:TillageEnum ; + ; rdfs:label "ridge till" . a owl:Class, - MIXS:TillageEnum ; + ; rdfs:label "strip tillage" . a owl:Class, - MIXS:TillageEnum ; + ; rdfs:label "tined" . a owl:Class, - MIXS:TillageEnum ; + ; rdfs:label "zonal tillage" . a owl:Class, - MIXS:TrainLineEnum ; + ; rdfs:label "green" . a owl:Class, - MIXS:TrainLineEnum ; + ; rdfs:label "orange" . a owl:Class, - MIXS:TrainLineEnum ; + ; rdfs:label "red" . a owl:Class, - MIXS:TrainStatLocEnum ; + ; rdfs:label "forest hills" . a owl:Class, - MIXS:TrainStatLocEnum ; + ; rdfs:label "riverside" . a owl:Class, - MIXS:TrainStatLocEnum ; + ; rdfs:label "south station above ground" . a owl:Class, - MIXS:TrainStatLocEnum ; + ; rdfs:label "south station amtrak" . a owl:Class, - MIXS:TrainStatLocEnum ; + ; rdfs:label "south station underground" . a owl:Class, - MIXS:TrainStopLocEnum ; + ; rdfs:label "downtown" . a owl:Class, - MIXS:TrainStopLocEnum ; + ; rdfs:label "end" . a owl:Class, - MIXS:TrainStopLocEnum ; + ; rdfs:label "mid" . a owl:Class, - MIXS:VisMediaEnum ; + ; rdfs:label "3D scans" . a owl:Class, - MIXS:VisMediaEnum ; + ; rdfs:label "commonly of the building" . a owl:Class, - MIXS:VisMediaEnum ; + ; rdfs:label "equipment" . a owl:Class, - MIXS:VisMediaEnum ; + ; rdfs:label "interiors" . a owl:Class, - MIXS:VisMediaEnum ; + ; rdfs:label "photos" . a owl:Class, - MIXS:VisMediaEnum ; + ; rdfs:label "site context (adjacent buildings, vegetation, terrain, streets)" . a owl:Class, - MIXS:VisMediaEnum ; + ; rdfs:label "videos" . a owl:Class, - MIXS:WallConstTypeEnum ; + ; rdfs:label "fire resistive" . a owl:Class, - MIXS:WallConstTypeEnum ; + ; rdfs:label "frame construction" . a owl:Class, - MIXS:WallConstTypeEnum ; + ; rdfs:label "joisted masonry" . a owl:Class, - MIXS:WallConstTypeEnum ; + ; rdfs:label "light noncombustible" . a owl:Class, - MIXS:WallConstTypeEnum ; + ; rdfs:label "masonry noncombustible" . a owl:Class, - MIXS:WallConstTypeEnum ; + ; rdfs:label "modified fire resistive" . a owl:Class, - MIXS:WallFinishMatEnum ; + ; rdfs:label "acoustical treatment" . a owl:Class, - MIXS:WallFinishMatEnum ; + ; rdfs:label "gypsum board" . a owl:Class, - MIXS:WallFinishMatEnum ; + ; rdfs:label "gypsum plaster" . a owl:Class, - MIXS:WallFinishMatEnum ; + ; rdfs:label "masonry" . a owl:Class, - MIXS:WallFinishMatEnum ; + ; rdfs:label "metal" . a owl:Class, - MIXS:WallFinishMatEnum ; + ; rdfs:label "plaster" . a owl:Class, - MIXS:WallFinishMatEnum ; + ; rdfs:label "stone facing" . a owl:Class, - MIXS:WallFinishMatEnum ; + ; rdfs:label "terrazzo" . a owl:Class, - MIXS:WallFinishMatEnum ; + ; rdfs:label "tile" . a owl:Class, - MIXS:WallFinishMatEnum ; + ; rdfs:label "veneer plaster" . a owl:Class, - MIXS:WallFinishMatEnum ; + ; rdfs:label "wood" . a owl:Class, - MIXS:WallLocEnum ; + ; rdfs:label "east" . a owl:Class, - MIXS:WallLocEnum ; + ; rdfs:label "north" . a owl:Class, - MIXS:WallLocEnum ; + ; rdfs:label "south" . a owl:Class, - MIXS:WallLocEnum ; + ; rdfs:label "west" . a owl:Class, - MIXS:WallSurfTreatmentEnum ; + ; rdfs:label "fabric" . a owl:Class, - MIXS:WallSurfTreatmentEnum ; + ; rdfs:label "no treatment" . a owl:Class, - MIXS:WallSurfTreatmentEnum ; + ; rdfs:label "painted" . a owl:Class, - MIXS:WallSurfTreatmentEnum ; + ; rdfs:label "paneling" . a owl:Class, - MIXS:WallSurfTreatmentEnum ; + ; rdfs:label "stucco" . a owl:Class, - MIXS:WallSurfTreatmentEnum ; + ; rdfs:label "wall paper" . a owl:Class, - MIXS:WallTextureEnum ; + ; rdfs:label "" . a owl:Class, - MIXS:WallTextureEnum ; + ; rdfs:label "Santa-Fe texture" . a owl:Class, - MIXS:WallTextureEnum ; + ; rdfs:label "crows feet" . a owl:Class, - MIXS:WallTextureEnum ; + ; rdfs:label "crows-foot stomp" . a owl:Class, - MIXS:WallTextureEnum ; + ; rdfs:label "double skip" . a owl:Class, - MIXS:WallTextureEnum ; + ; rdfs:label "hawk and trowel" . a owl:Class, - MIXS:WallTextureEnum ; + ; rdfs:label "knockdown" . a owl:Class, - MIXS:WallTextureEnum ; + ; rdfs:label "orange peel" . a owl:Class, - MIXS:WallTextureEnum ; + ; rdfs:label "popcorn" . a owl:Class, - MIXS:WallTextureEnum ; + ; rdfs:label "rosebud stomp" . a owl:Class, - MIXS:WallTextureEnum ; + ; rdfs:label "skip trowel" . a owl:Class, - MIXS:WallTextureEnum ; + ; rdfs:label "smooth" . a owl:Class, - MIXS:WallTextureEnum ; + ; rdfs:label "stomp knockdown" . a owl:Class, - MIXS:WallTextureEnum ; + ; rdfs:label "swirl" . a owl:Class, - MIXS:WaterFeatTypeEnum ; + ; rdfs:label "fountain" . a owl:Class, - MIXS:WaterFeatTypeEnum ; + ; rdfs:label "pool" . a owl:Class, - MIXS:WaterFeatTypeEnum ; + ; rdfs:label "standing feature" . a owl:Class, - MIXS:WaterFeatTypeEnum ; + ; rdfs:label "stream" . a owl:Class, - MIXS:WaterFeatTypeEnum ; + ; rdfs:label "waterfall" . a owl:Class, - MIXS:WeekdayEnum ; + ; rdfs:label "Friday" . a owl:Class, - MIXS:WeekdayEnum ; + ; rdfs:label "Monday" . a owl:Class, - MIXS:WeekdayEnum ; + ; rdfs:label "Saturday" . a owl:Class, - MIXS:WeekdayEnum ; + ; rdfs:label "Sunday" . a owl:Class, - MIXS:WeekdayEnum ; + ; rdfs:label "Thursday" . a owl:Class, - MIXS:WeekdayEnum ; + ; rdfs:label "Tuesday" . a owl:Class, - MIXS:WeekdayEnum ; + ; rdfs:label "Wednesday" . a owl:Class, - MIXS:WindowCondEnum ; + ; rdfs:label "damaged" . a owl:Class, - MIXS:WindowCondEnum ; + ; rdfs:label "needs repair" . a owl:Class, - MIXS:WindowCondEnum ; + ; rdfs:label "new" . a owl:Class, - MIXS:WindowCondEnum ; + ; rdfs:label "rupture" . a owl:Class, - MIXS:WindowCondEnum ; + ; rdfs:label "visible wear" . a owl:Class, - MIXS:WindowCoverEnum ; + ; rdfs:label "blinds" . a owl:Class, - MIXS:WindowCoverEnum ; + ; rdfs:label "curtains" . a owl:Class, - MIXS:WindowCoverEnum ; + ; rdfs:label "none" . a owl:Class, - MIXS:WindowHorizPosEnum ; + ; rdfs:label "left" . a owl:Class, - MIXS:WindowHorizPosEnum ; + ; rdfs:label "middle" . a owl:Class, - MIXS:WindowHorizPosEnum ; + ; rdfs:label "right" . a owl:Class, - MIXS:WindowLocEnum ; + ; rdfs:label "east" . a owl:Class, - MIXS:WindowLocEnum ; + ; rdfs:label "north" . a owl:Class, - MIXS:WindowLocEnum ; + ; rdfs:label "south" . a owl:Class, - MIXS:WindowLocEnum ; + ; rdfs:label "west" . a owl:Class, - MIXS:WindowMatEnum ; + ; rdfs:label "clad" . a owl:Class, - MIXS:WindowMatEnum ; + ; rdfs:label "fiberglass" . a owl:Class, - MIXS:WindowMatEnum ; + ; rdfs:label "metal" . a owl:Class, - MIXS:WindowMatEnum ; + ; rdfs:label "vinyl" . a owl:Class, - MIXS:WindowMatEnum ; + ; rdfs:label "wood" . a owl:Class, - MIXS:WindowTypeEnum ; + ; rdfs:label "fixed window" . a owl:Class, - MIXS:WindowTypeEnum ; + ; rdfs:label "horizontal sash window" . a owl:Class, - MIXS:WindowTypeEnum ; + ; rdfs:label "single-hung sash window" . a owl:Class, - MIXS:WindowVertPosEnum ; + ; rdfs:label "bottom" . a owl:Class, - MIXS:WindowVertPosEnum ; + ; rdfs:label "high" . a owl:Class, - MIXS:WindowVertPosEnum ; + ; rdfs:label "low" . a owl:Class, - MIXS:WindowVertPosEnum ; + ; rdfs:label "middle" . a owl:Class, - MIXS:WindowVertPosEnum ; + ; rdfs:label "top" . a owl:Class, @@ -11906,16 +11902,16 @@ nmdc:CollectingBiosamplesFromSite a owl:Class, owl:onProperty nmdc:has_inputs ] [ a owl:Restriction ; owl:onProperty nmdc:has_inputs ; owl:someValuesFrom nmdc:Site ] ) ], + [ a owl:Restriction ; + owl:onClass linkml:String ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], [ a owl:Class ; owl:intersectionOf ( [ a owl:Restriction ; owl:allValuesFrom nmdc:Biosample ; owl:onProperty nmdc:has_outputs ] [ a owl:Restriction ; owl:onProperty nmdc:has_outputs ; owl:someValuesFrom nmdc:Biosample ] ) ], - [ a owl:Restriction ; - owl:onClass linkml:String ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], nmdc:PlannedProcess ; skos:note "this illustrates implementing a Biosample relation with a process class" . @@ -11985,24 +11981,12 @@ nmdc:DataObject a owl:Class, rdfs:label "DataObject" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:FileTypeEnum ; - owl:onProperty nmdc:data_object_type ], + owl:onClass nmdc:Activity ; + owl:onProperty nmdc:was_generated_by ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:Bytes ; owl:onProperty nmdc:file_size_bytes ], - [ a owl:Restriction ; - owl:onClass linkml:String ; - owl:onProperty dcterms:description ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:compression_type ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:Activity ; - owl:onProperty nmdc:was_generated_by ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -12012,17 +11996,29 @@ nmdc:DataObject a owl:Class, owl:onProperty nmdc:id ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:type ], + owl:onProperty nmdc:name ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass linkml:String ; - owl:onProperty nmdc:name ; + owl:onProperty dcterms:description ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:url ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:FileTypeEnum ; + owl:onProperty nmdc:data_object_type ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:compression_type ], nmdc:NamedThing ; skos:definition "An object that primarily consists of symbols that represent information. Files, records, and omics data are examples of data objects." ; skos:editorialNote "removed previous id_prefixes value of GOLD, since we are now using pattern-based id validation" ; @@ -12360,15 +12356,15 @@ nmdc:ImageValue a owl:Class, rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:display_order ], + owl:onProperty nmdc:url ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty dcterms:description ], + owl:onProperty nmdc:display_order ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:url ], + owl:onProperty dcterms:description ], nmdc:AttributeValue ; skos:definition "An attribute value representing an image." . @@ -12387,31 +12383,31 @@ nmdc:MagsAnalysisActivity a owl:Class, dcterms:title "Metagenome-Assembled Genome analysis activity" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty nmdc:low_depth_contig_num ], + owl:onClass linkml:String ; + owl:onProperty nmdc:type ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:MagBin ; - owl:onProperty nmdc:mags_list ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Integer ; + owl:onProperty nmdc:too_short_contig_num ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; owl:onProperty nmdc:input_contig_num ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:type ], + owl:onClass linkml:Integer ; + owl:onProperty nmdc:binned_contig_num ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; owl:onProperty nmdc:unbinned_contig_num ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty nmdc:too_short_contig_num ], + owl:allValuesFrom nmdc:MagBin ; + owl:onProperty nmdc:mags_list ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:binned_contig_num ], + owl:onProperty nmdc:low_depth_contig_num ], [ a owl:Restriction ; owl:onClass linkml:String ; owl:onProperty nmdc:id ; @@ -12445,7 +12441,7 @@ nmdc:MetagenomeAssembly a owl:Class, rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:contigs ], + owl:onProperty nmdc:scaf_n_gt50k ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; @@ -12453,23 +12449,19 @@ nmdc:MetagenomeAssembly a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_l90 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:type ], + owl:onProperty nmdc:contigs ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_n50 ], + owl:onProperty nmdc:asm_score ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_n90 ], + owl:onProperty nmdc:num_aligned_reads ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:asm_score ], + owl:onClass linkml:String ; + owl:onProperty nmdc:type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; @@ -12477,91 +12469,95 @@ nmdc:MetagenomeAssembly a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_l50 ], + owl:onProperty nmdc:scaf_powsum ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:gc_avg ], + owl:onProperty nmdc:ctg_l50 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:num_aligned_reads ], + owl:onProperty nmdc:scaf_logsum ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_l90 ], + owl:onProperty nmdc:gc_std ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_logsum ], + owl:onProperty nmdc:scaf_n50 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_n_gt50k ], + owl:onProperty nmdc:gap_pct ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_powsum ], + owl:onProperty nmdc:ctg_logsum ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_l50 ], + owl:onProperty nmdc:scaffolds ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:contig_bp ], + owl:onProperty nmdc:scaf_n90 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:insdc_assembly_identifiers ], + owl:onClass linkml:Float ; + owl:onProperty nmdc:scaf_l50 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_logsum ], + owl:onProperty nmdc:ctg_powsum ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:gap_pct ], + owl:onProperty nmdc:ctg_max ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_max ], + owl:onProperty nmdc:ctg_l90 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_bp ], + owl:onProperty nmdc:scaf_max ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaffolds ], + owl:onProperty nmdc:contig_bp ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_n90 ], + owl:onProperty nmdc:scaf_l90 ], [ a owl:Restriction ; - owl:onClass linkml:String ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Float ; + owl:onProperty nmdc:scaf_bp ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_pct_gt50k ], + owl:onProperty nmdc:ctg_n90 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; owl:onProperty nmdc:ctg_n50 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:gc_std ], + owl:onClass linkml:String ; + owl:onProperty nmdc:insdc_assembly_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_powsum ], + owl:onProperty nmdc:scaf_pct_gt50k ], + [ a owl:Restriction ; + owl:onClass linkml:String ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_max ], + owl:onProperty nmdc:gc_avg ], nmdc:WorkflowExecutionActivity ; skos:definition "A workflow execution activity that converts sequencing reads into an assembled metagenome." ; skos:note "instances of this class may use a de novo assembly strategy in most or all cases relevant to NMDC" . @@ -12581,12 +12577,12 @@ nmdc:MetaproteomicsAnalysisActivity a owl:Class, linkml:ClassDefinition ; rdfs:label "MetaproteomicsAnalysisActivity" ; rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom nmdc:PeptideQuantification ; + owl:onProperty nmdc:has_peptide_quantifications ], + [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:Instrument ; owl:onProperty nmdc:used ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:PeptideQuantification ; - owl:onProperty nmdc:has_peptide_quantifications ], [ a owl:Restriction ; owl:onClass linkml:String ; owl:onProperty nmdc:id ; @@ -12611,119 +12607,119 @@ nmdc:NomAnalysisActivity a owl:Class, linkml:ClassDefinition ; rdfs:label "NomAnalysisActivity" ; rdfs:subClassOf [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], + owl:onProperty nmdc:has_calibration ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:Instrument ; owl:onProperty nmdc:used ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:has_calibration ], + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], nmdc:WorkflowExecutionActivity . nmdc:OmicsProcessing a owl:Class, linkml:ClassDefinition ; rdfs:label "OmicsProcessing" ; rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom linkml:Uriorcurie ; - owl:onProperty nmdc:insdc_experiment_identifiers ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000111 ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000051 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:add_date ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:PersonValue ; - owl:onProperty nmdc:principal_investigator ], + owl:onProperty nmdc:instrument_name ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:mod_date ], + owl:onProperty nmdc:ncbi_project_name ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:instrument_name ], + owl:onClass nmdc:ControlledTermValue ; + owl:onProperty nmdc:omics_type ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:NamedThing ; + owl:onProperty nmdc:has_input ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000037 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:ProcessingInstitutionEnum ; - owl:onProperty nmdc:processing_institution ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:type ], + owl:allValuesFrom nmdc:NamedThing ; + owl:onProperty dcterms:isPartOf ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000038 ], + owl:onProperty ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:PersonValue ; + owl:onProperty nmdc:principal_investigator ], [ a owl:Restriction ; owl:onClass linkml:String ; owl:onProperty nmdc:id ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:ncbi_project_name ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000052 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000044 ], + owl:onClass linkml:String ; + owl:onProperty nmdc:add_date ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000049 ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:NamedThing ; - owl:onProperty dcterms:isPartOf ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:mod_date ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000045 ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom linkml:Uriorcurie ; - owl:onProperty nmdc:gold_sequencing_project_identifiers ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000050 ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:NamedThing ; - owl:onProperty nmdc:has_input ], + owl:allValuesFrom linkml:Uriorcurie ; + owl:onProperty nmdc:insdc_experiment_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:ControlledTermValue ; - owl:onProperty nmdc:omics_type ], + owl:onClass nmdc:ProcessingInstitutionEnum ; + owl:onProperty nmdc:processing_institution ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Uriorcurie ; + owl:onProperty nmdc:gold_sequencing_project_identifiers ], [ a owl:Restriction ; owl:allValuesFrom nmdc:NamedThing ; owl:onProperty nmdc:has_output ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000046 ], + owl:onProperty ], nmdc:BiosampleProcessing ; skos:altLabel "experiment", "omics assay", "sequencing project" ; skos:broadMatch OBI:0000070, - mgnify:Assay ; + jgi:Assay ; skos:definition "The methods and processes used to generate omics data from a biosample or organism." ; skos:note "The ID prefix for objects coming from GOLD will be gold:Gp" . @@ -12747,33 +12743,29 @@ nmdc:ReadQcAnalysisActivity a owl:Class, rdfs:label "ReadQcAnalysisActivity" ; dcterms:title "Read quality control analysis activity" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass linkml:String ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:input_base_count ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:version ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:output_read_count ], + owl:onProperty nmdc:output_base_count ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:output_base_count ], + owl:onProperty nmdc:input_read_count ], + [ a owl:Restriction ; + owl:onClass linkml:String ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:output_read_bases ], + owl:onProperty nmdc:input_read_bases ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:input_read_count ], + owl:onProperty nmdc:output_read_bases ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -12781,7 +12773,11 @@ nmdc:ReadQcAnalysisActivity a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:input_read_bases ], + owl:onProperty nmdc:input_base_count ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Float ; + owl:onProperty nmdc:output_read_count ], nmdc:WorkflowExecutionActivity ; skos:definition "A workflow execution activity that performs quality control on raw Illumina reads including quality trimming, artifact removal, linker trimming, adapter trimming, spike-in removal, and human/cat/dog/mouse/microbe contaminant removal" . @@ -13219,128 +13215,128 @@ nmdc:websites a owl:ObjectProperty, rdfs:label "NEON" ; dcterms:title "National Science Foundation's National Ecological Observatory Network" . -MIXS:0000037 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "nucl_acid_ext" ; dcterms:title "nucleic acid extraction" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:sequencing_field ; + rdfs:subPropertyOf ; skos:altLabel "nucleic acid extraction" ; skos:definition "A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the material separation to recover the nucleic acid fraction from a sample" ; - skos:exactMatch MIXS:0000037 ; + skos:exactMatch ; linkml:examples "Example(value='https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf', description=None)" ; nmdc:expected_value "PMID, DOI or URL" . -MIXS:0000038 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "nucl_acid_amp" ; dcterms:title "nucleic acid amplification" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:sequencing_field ; + rdfs:subPropertyOf ; skos:altLabel "nucleic acid amplification" ; skos:definition "A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the enzymatic amplification (PCR, TMA, NASBA) of specific nucleic acids" ; - skos:exactMatch MIXS:0000038 ; + skos:exactMatch ; linkml:examples "Example(value='https://phylogenomics.me/protocols/16s-pcr-protocol/', description=None)" ; nmdc:expected_value "PMID, DOI or URL" . -MIXS:0000044 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "target_gene" ; dcterms:title "target gene" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:sequencing_field ; + rdfs:subPropertyOf ; skos:altLabel "target gene" ; skos:definition "Targeted gene or locus name for marker gene studies" ; - skos:exactMatch MIXS:0000044 ; + skos:exactMatch ; linkml:examples "Example(value='16S rRNA, 18S rRNA, nif, amoA, rpo', description=None)" ; nmdc:expected_value "gene name" . -MIXS:0000045 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "target_subfragment" ; dcterms:title "target subfragment" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:sequencing_field ; + rdfs:subPropertyOf ; skos:altLabel "target subfragment" ; skos:definition "Name of subfragment of a gene or locus. Important to e.g. identify special regions on marker genes like V6 on 16S rRNA" ; - skos:exactMatch MIXS:0000045 ; + skos:exactMatch ; linkml:examples "Example(value='V6, V9, ITS', description=None)" ; nmdc:expected_value "gene fragment name" . -MIXS:0000046 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "pcr_primers" ; dcterms:title "pcr primers" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:sequencing_field ; + rdfs:subPropertyOf ; skos:altLabel "pcr primers" ; skos:definition "PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters" ; - skos:exactMatch MIXS:0000046 ; + skos:exactMatch ; linkml:examples "Example(value='FWD:GTGCCAGCMGCCGCGGTAA;REV:GGACTACHVGGGTWTCTAAT', description=None)" ; nmdc:expected_value "FWD: forward primer sequence;REV:reverse primer sequence" . -MIXS:0000049 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "pcr_cond" ; dcterms:title "pcr conditions" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:sequencing_field ; + rdfs:subPropertyOf ; skos:altLabel "pcr conditions" ; skos:definition "Description of reaction conditions and components of PCR in the form of 'initial denaturation:94degC_1.5min; annealing=...'" ; - skos:exactMatch MIXS:0000049 ; + skos:exactMatch ; linkml:examples "Example(value='initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35', description=None)" ; nmdc:expected_value "initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes;total cycles" . -MIXS:0000050 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "seq_meth" ; dcterms:title "sequencing method" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:sequencing_field ; + rdfs:subPropertyOf ; skos:altLabel "sequencing method" ; skos:definition "Sequencing machine used. Where possible the term should be taken from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)." ; - skos:exactMatch MIXS:0000050 ; + skos:exactMatch ; linkml:examples "Example(value='454 Genome Sequencer FLX [OBI:0000702]', description=None)" ; nmdc:expected_value "Text or OBI" . -MIXS:0000051 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "seq_quality_check" ; dcterms:title "sequence quality check" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:sequencing_field ; + rdfs:subPropertyOf ; skos:altLabel "sequence quality check" ; skos:definition "Indicate if the sequence has been called by automatic systems (none) or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms). Applied only for sequences that are not submitted to SRA,ENA or DRA" ; - skos:exactMatch MIXS:0000051 ; + skos:exactMatch ; linkml:examples "Example(value='none', description=None)" ; nmdc:expected_value "none or manually edited" . -MIXS:0000052 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "chimera_check" ; dcterms:title "chimera check software" ; rdfs:range nmdc:TextValue ; - rdfs:subPropertyOf MIXS:sequencing_field ; + rdfs:subPropertyOf ; skos:altLabel "chimera check software" ; skos:definition "Tool(s) used for chimera checking, including version number and parameters, to discover and remove chimeric sequences. A chimeric sequence is comprised of two or more phylogenetically distinct parent sequences." ; - skos:exactMatch MIXS:0000052 ; + skos:exactMatch ; linkml:examples "Example(value='uchime;v4.1;default parameters', description=None)" ; nmdc:expected_value "name and version of software, parameters used" . -MIXS:0000111 a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "samp_vol_we_dna_ext" ; dcterms:title "sample volume or weight for DNA extraction" ; rdfs:range nmdc:QuantityValue ; - rdfs:subPropertyOf MIXS:nucleic_acid_sequence_source_field ; + rdfs:subPropertyOf ; skos:altLabel "sample volume or weight for DNA extraction" ; skos:definition "Volume (ml) or mass (g) of total collected sample processed for DNA extraction. Note: total sample collected should be entered under the term Sample Size (MIXS:0000001)." ; - skos:exactMatch MIXS:0000111 ; + skos:exactMatch ; linkml:examples "Example(value='1500 milliliter', description=None)" ; nmdc:expected_value "measurement value" ; nmdc:preferred_unit "millliter, gram, milligram, square centimeter" . -MIXS:OrganismCountEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "organism_count_enum" ; owl:unionOf ( ) ; @@ -13358,22 +13354,22 @@ nmdc:ChemicalEntity a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:inchi ], + owl:onProperty nmdc:chemical_formula ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:chemical_formula ], + owl:onProperty nmdc:inchi_key ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:inchi_key ], + owl:onProperty nmdc:inchi ], nmdc:OntologyClass ; skos:altLabel "chemical", "chemical compound", "chemical substance", "metabolite" ; skos:definition "An atom or molecule that can be represented with a chemical formula. Include lipids, glycans, natural products, drugs. There may be different terms for distinct acid-base forms, protonation states" ; - skos:exactMatch biolink:ChemicalSubstance ; + skos:exactMatch ; skos:note "As with the parent OntologyClass, we will not assign an nmdc id pattern or typecode to this class." . nmdc:ContainerTypeEnum a owl:Class, @@ -13390,11 +13386,7 @@ nmdc:DissolvingActivity a owl:Class, rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:MaterialSample ; - owl:onProperty nmdc:material_input ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:SolventEnum ; - owl:onProperty nmdc:dissolution_reagent ], + owl:onProperty nmdc:material_output ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:LabDevice ; @@ -13402,7 +13394,11 @@ nmdc:DissolvingActivity a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:MaterialSample ; - owl:onProperty nmdc:material_output ], + owl:onProperty nmdc:material_input ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:SolventEnum ; + owl:onProperty nmdc:dissolution_reagent ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; @@ -13421,23 +13417,23 @@ nmdc:FunctionalAnnotation a owl:Class, "https://img.jgi.doe.gov/docs/functional-annotation.pdf" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:GeneProduct ; - owl:onProperty nmdc:subject ], + owl:onClass linkml:String ; + owl:onProperty nmdc:has_function ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:OntologyClass ; owl:onProperty nmdc:type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:MetagenomeAnnotationActivity ; - owl:onProperty nmdc:was_generated_by ], + owl:onClass nmdc:GeneProduct ; + owl:onProperty nmdc:subject ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:has_function ] ; + owl:onClass nmdc:MetagenomeAnnotationActivity ; + owl:onProperty nmdc:was_generated_by ] ; skos:definition "An assignment of a function term (e.g. reaction or pathway) that is executed by a gene product, or which the gene product plays an active role in. Functional annotations can be assigned manually by curators, or automatically in workflows. In the context of NMDC, all function annotation is performed automatically, typically using HMM or Blast type methods" ; skos:editorialNote "move id slot usage patterns to has_function slot usage?" ; - skos:narrowMatch biolink:GeneToGoTermAssociation . + skos:narrowMatch . nmdc:FunctionalAnnotationTerm a owl:Class, linkml:ClassDefinition ; @@ -13452,8 +13448,12 @@ nmdc:GenomeFeature a owl:Class, rdfs:label "GenomeFeature" ; rdfs:seeAlso "https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass linkml:String ; - owl:onProperty nmdc:seqid ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:GeneProduct ; + owl:onProperty nmdc:encodes ], + [ a owl:Restriction ; + owl:onClass linkml:Integer ; + owl:onProperty nmdc:start ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; @@ -13461,27 +13461,23 @@ nmdc:GenomeFeature a owl:Class, owl:onProperty nmdc:type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty nmdc:phase ], + owl:onClass linkml:String ; + owl:onProperty nmdc:strand ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:feature_type ], [ a owl:Restriction ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:start ; + owl:onProperty nmdc:end ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:GeneProduct ; - owl:onProperty nmdc:encodes ], + owl:onClass linkml:Integer ; + owl:onProperty nmdc:phase ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:strand ], - [ a owl:Restriction ; - owl:onClass linkml:Integer ; - owl:onProperty nmdc:end ; + owl:onProperty nmdc:seqid ; owl:qualifiedCardinality 1 ] ; skos:definition "A feature localized to an interval along a genome" ; skos:note "corresponds to an entry in GFF3" . @@ -13503,84 +13499,84 @@ nmdc:MagBin a owl:Class, rdfs:label "MagBin" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:total_bases ], + owl:onClass linkml:Integer ; + owl:onProperty nmdc:num_5s ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:gtdbtk_phylum ], + owl:onClass linkml:Float ; + owl:onProperty nmdc:completeness ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:gtdbtk_order ], + owl:onProperty nmdc:gtdbtk_domain ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:gene_count ], + owl:onProperty nmdc:num_t_rna ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:gtdbtk_family ], + owl:onProperty nmdc:gtdbtk_genus ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:gtdbtk_class ], + owl:onProperty nmdc:gtdbtk_species ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:members_id ], + owl:onClass linkml:Integer ; + owl:onProperty nmdc:gene_count ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:gtdbtk_species ], + owl:onProperty nmdc:gtdbtk_family ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty nmdc:num_16s ], + owl:onClass linkml:String ; + owl:onProperty nmdc:gtdbtk_order ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:completeness ], + owl:onClass linkml:String ; + owl:onProperty nmdc:gtdbtk_class ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:bin_name ], + owl:onProperty nmdc:members_id ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:num_5s ], + owl:onProperty nmdc:number_of_contig ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:gtdbtk_genus ], + owl:onProperty nmdc:total_bases ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:gtdbtk_domain ], + owl:onClass linkml:Integer ; + owl:onProperty nmdc:num_23s ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:num_23s ], + owl:onProperty nmdc:num_16s ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:contamination ], + owl:onClass linkml:String ; + owl:onProperty nmdc:bin_name ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty nmdc:num_t_rna ], + owl:onClass linkml:String ; + owl:onProperty nmdc:type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:bin_quality ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:type ], + owl:onClass linkml:Float ; + owl:onProperty nmdc:contamination ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty nmdc:number_of_contig ] . + owl:onClass linkml:String ; + owl:onProperty nmdc:gtdbtk_phylum ] . nmdc:MaterialEntity a owl:Class, linkml:ClassDefinition ; @@ -13595,6 +13591,10 @@ nmdc:MaterialSamplingActivity a owl:Class, rdfs:label "MaterialSamplingActivity" ; dcterms:title "Material sampling activity" ; rdfs:subClassOf [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:Biosample ; + owl:onProperty nmdc:biosample_input ], + [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:MaterialContainer ; owl:onProperty nmdc:collected_into ], @@ -13609,11 +13609,7 @@ nmdc:MaterialSamplingActivity a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:SamplingMethodEnum ; - owl:onProperty nmdc:sampling_method ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:Biosample ; - owl:onProperty nmdc:biosample_input ] ; + owl:onProperty nmdc:sampling_method ] ; skos:altLabel "weighing-activity" ; skos:exactMatch OBI:0000744 . @@ -13622,31 +13618,31 @@ nmdc:MetaboliteQuantification a owl:Class, rdfs:label "MetaboliteQuantification" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:highest_similarity_score ], + owl:onClass nmdc:ChemicalEntity ; + owl:onProperty nmdc:metabolite_quantified ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; owl:onProperty nmdc:alternative_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:ChemicalEntity ; - owl:onProperty nmdc:metabolite_quantified ] ; + owl:onClass linkml:Float ; + owl:onProperty nmdc:highest_similarity_score ] ; skos:definition "This is used to link a metabolomics analysis workflow to a specific metabolite" . nmdc:MetagenomeAnnotationActivity a owl:Class, linkml:ClassDefinition ; rdfs:label "MetagenomeAnnotationActivity" ; rdfs:subClassOf [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:type ], + [ a owl:Restriction ; owl:allValuesFrom linkml:Uriorcurie ; owl:onProperty nmdc:gold_analysis_project_identifiers ], [ a owl:Restriction ; owl:onClass linkml:String ; owl:onProperty nmdc:id ; owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:type ], nmdc:WorkflowExecutionActivity ; skos:definition "A workflow execution activity that provides functional and structural annotation of assembled metagenome contigs" . @@ -13655,11 +13651,12 @@ nmdc:PeptideQuantification a owl:Class, rdfs:label "PeptideQuantification" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:min_q_value ], + owl:onClass linkml:Integer ; + owl:onProperty nmdc:peptide_spectral_count ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:GeneProduct ; - owl:onProperty nmdc:all_proteins ], + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:GeneProduct ; + owl:onProperty nmdc:best_protein ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -13667,15 +13664,14 @@ nmdc:PeptideQuantification a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:peptide_spectral_count ], + owl:onProperty nmdc:peptide_sum_masic_abundance ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:GeneProduct ; - owl:onProperty nmdc:best_protein ], + owl:onClass linkml:Float ; + owl:onProperty nmdc:min_q_value ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty nmdc:peptide_sum_masic_abundance ] ; + owl:allValuesFrom nmdc:GeneProduct ; + owl:onProperty nmdc:all_proteins ] ; skos:definition "This is used to link a metaproteomics analysis workflow to a specific peptide sequence and related information" . nmdc:ReactionActivity a owl:Class, @@ -13683,10 +13679,6 @@ nmdc:ReactionActivity a owl:Class, rdfs:label "ReactionActivity" ; dcterms:title "Reaction activity" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty nmdc:reaction_time ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:reaction_temperature ], @@ -13698,6 +13690,10 @@ nmdc:ReactionActivity a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:LabDevice ; owl:onProperty nmdc:reaction_aided_by ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:QuantityValue ; + owl:onProperty nmdc:reaction_time ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:MaterialSample ; @@ -13787,7 +13783,7 @@ nmdc:was_informed_by a owl:ObjectProperty, linkml:topValue a owl:DatatypeProperty ; rdfs:label "value" . -MIXS:OxyStatSampEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "oxy_stat_samp_enum" ; owl:unionOf ( ) ; @@ -13795,7 +13791,7 @@ MIXS:OxyStatSampEnum a owl:Class, , . -MIXS:investigation_field a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "investigation field" ; rdfs:range linkml:String ; @@ -13861,19 +13857,19 @@ nmdc:GeolocationValue a owl:Class, rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:DecimalDegree ; - owl:onProperty wgs84:long ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:has_raw_value ], + owl:onClass nmdc:DecimalDegree ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:DecimalDegree ; - owl:onProperty wgs84:lat ], + owl:onClass linkml:String ; + owl:onProperty nmdc:has_raw_value ], nmdc:AttributeValue ; skos:definition "A normalized value for a location on the earth's surface" ; skos:editorialNote "what did 'to_str: {latitude} {longitude}' mean?" ; - skos:exactMatch schema:GeoCoordinates . + skos:exactMatch . nmdc:MaterialContainer a owl:Class, linkml:ClassDefinition ; @@ -13893,15 +13889,15 @@ nmdc:PlannedProcess a owl:Class, rdfs:label "PlannedProcess" ; dcterms:title "Planned Process" ; rdfs:subClassOf [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:Agent ; + owl:onProperty nmdc:participating_agent ], + [ a owl:Restriction ; owl:allValuesFrom nmdc:NamedThing ; owl:onProperty nmdc:has_inputs ], [ a owl:Restriction ; owl:allValuesFrom nmdc:NamedThing ; owl:onProperty nmdc:has_outputs ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:Agent ; - owl:onProperty nmdc:participating_agent ], nmdc:NamedThing ; skos:exactMatch OBI:0000011 . @@ -13924,127 +13920,127 @@ nmdc:Study a owl:Class, rdfs:label "Study" ; rdfs:subClassOf [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:relevant_protocols ], + owl:onProperty nmdc:ess_dive_datasets ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Uriorcurie ; + owl:onProperty nmdc:massive_study_identifiers ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:AttributeValue ; + owl:onProperty nmdc:doi ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:ecosystem_type ], + owl:onProperty nmdc:objective ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:alternative_identifiers ], + owl:onProperty nmdc:relevant_protocols ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:insdc_bioproject_identifiers ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:ImageValue ; - owl:onProperty nmdc:study_image ], + owl:onProperty nmdc:ecosystem ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:name ], + owl:onProperty nmdc:specific_ecosystem ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:CreditAssociation ; - owl:onProperty prov:qualifiedAssociation ], + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:websites ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:related_identifiers ], + owl:onProperty nmdc:notes ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:emsl_proposal_doi ], + owl:onProperty nmdc:mgnify_project_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:ecosystem_subtype ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:websites ], + owl:onProperty nmdc:emsl_proposal_identifier ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:alternative_titles ], + owl:onProperty nmdc:alternative_descriptions ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:notes ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:Uriorcurie ; - owl:onProperty nmdc:massive_study_identifiers ], + owl:onProperty nmdc:ecosystem_subtype ], [ a owl:Restriction ; - owl:onClass linkml:String ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:funding_sources ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty dcterms:description ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:AttributeValue ; - owl:onProperty nmdc:doi ], + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:publications ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ImageValue ; + owl:onProperty nmdc:study_image ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:title ], + owl:onProperty nmdc:ecosystem_category ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:PersonValue ; - owl:onProperty nmdc:principal_investigator ], + owl:onClass linkml:String ; + owl:onProperty nmdc:emsl_project_identifier ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:ess_dive_datasets ], + owl:onProperty nmdc:alternative_names ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:abstract ], + owl:onProperty nmdc:type ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:funding_sources ], + owl:allValuesFrom linkml:Uriorcurie ; + owl:onProperty nmdc:gold_study_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:emsl_project_identifier ], + owl:onProperty nmdc:name ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:ecosystem_category ], + owl:onProperty nmdc:ecosystem_type ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:PersonValue ; + owl:onProperty nmdc:principal_investigator ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:type ], + owl:onProperty nmdc:related_identifiers ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:alternative_descriptions ], + owl:allValuesFrom nmdc:CreditAssociation ; + owl:onProperty prov:qualifiedAssociation ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:emsl_proposal_identifier ], + owl:onProperty nmdc:abstract ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:objective ], + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:publications ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:mgnify_project_identifiers ], + owl:onProperty nmdc:alternative_titles ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:alternative_names ], + owl:onProperty nmdc:alternative_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:specific_ecosystem ], + owl:onProperty nmdc:title ], [ a owl:Restriction ; - owl:allValuesFrom linkml:Uriorcurie ; - owl:onProperty nmdc:gold_study_identifiers ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:emsl_proposal_doi ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:ecosystem ], + owl:onProperty nmdc:insdc_bioproject_identifiers ], nmdc:NamedThing ; skos:altLabel "investigation", "project", @@ -14054,7 +14050,7 @@ nmdc:Study a owl:Class, "umbrella project" ; skos:broadMatch prov:Activity ; skos:closeMatch NCIT:C41198, - mgnify:Investigation ; + jgi:Investigation ; skos:definition "A study summarizes the overall goal of a research initiative and outlines the key objective of its underlying projects." ; skos:editorialNote "GOLD, insdc.srs and mgnify are reasonable prefixes for alternative study identifiers, but no longer for the Study.id", "sample GOLD link https://identifiers.org/gold:Gs0110115", @@ -14063,7 +14059,7 @@ nmdc:Study a owl:Class, skos:exactMatch NCIT:C63536, OBI:0000066, , - mgnify:Study . + jgi:Study . nmdc:gold_identifiers a owl:ObjectProperty, linkml:SlotDefinition ; @@ -14084,8 +14080,8 @@ nmdc:has_numeric_value a owl:ObjectProperty, rdfs:label "has_numeric_value" ; rdfs:range linkml:Float ; skos:definition "Links a quantity value to a number" ; - skos:exactMatch qud:quantityValue, - schema:value . + skos:exactMatch , + . nmdc:has_raw_value a owl:ObjectProperty, linkml:SlotDefinition ; @@ -14125,7 +14121,7 @@ dcterms:isPartOf a owl:ObjectProperty, linkml:TypeDefinition a owl:Class ; rdfs:label "type_definition" . -MIXS:ArchStrucEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "arch_struc_enum" ; owl:unionOf ( ) ; @@ -14133,7 +14129,7 @@ MIXS:ArchStrucEnum a owl:Class, , . -MIXS:DoorDirectEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "door_direct_enum" ; owl:unionOf ( ) ; @@ -14141,7 +14137,7 @@ MIXS:DoorDirectEnum a owl:Class, , . -MIXS:DoorTypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "door_type_enum" ; owl:unionOf ( ) ; @@ -14149,7 +14145,7 @@ MIXS:DoorTypeEnum a owl:Class, , . -MIXS:FurnitureEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "furniture_enum" ; owl:unionOf ( ) ; @@ -14157,7 +14153,7 @@ MIXS:FurnitureEnum a owl:Class, , . -MIXS:RelSampLocEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "rel_samp_loc_enum" ; owl:unionOf ( ) ; @@ -14165,7 +14161,7 @@ MIXS:RelSampLocEnum a owl:Class, , . -MIXS:RoomLocEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "room_loc_enum" ; owl:unionOf ( ) ; @@ -14173,7 +14169,7 @@ MIXS:RoomLocEnum a owl:Class, , . -MIXS:SampMdEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "samp_md_enum" ; owl:unionOf ( ) ; @@ -14183,7 +14179,7 @@ MIXS:SampMdEnum a owl:Class, , . -MIXS:SubstructureTypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "substructure_type_enum" ; owl:unionOf ( ) ; @@ -14191,7 +14187,7 @@ MIXS:SubstructureTypeEnum a owl:Class, , . -MIXS:TrainLineEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "train_line_enum" ; owl:unionOf ( ) ; @@ -14199,7 +14195,7 @@ MIXS:TrainLineEnum a owl:Class, , . -MIXS:TrainStopLocEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "train_stop_loc_enum" ; owl:unionOf ( ) ; @@ -14207,7 +14203,7 @@ MIXS:TrainStopLocEnum a owl:Class, , . -MIXS:WindowCoverEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "window_cover_enum" ; owl:unionOf ( ) ; @@ -14215,7 +14211,7 @@ MIXS:WindowCoverEnum a owl:Class, , . -MIXS:WindowHorizPosEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "window_horiz_pos_enum" ; owl:unionOf ( ) ; @@ -14223,7 +14219,7 @@ MIXS:WindowHorizPosEnum a owl:Class, , . -MIXS:WindowTypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "window_type_enum" ; owl:unionOf ( ) ; @@ -14236,13 +14232,13 @@ nmdc:LabDevice a owl:Class, rdfs:label "LabDevice" ; dcterms:title "Lab device" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty nmdc:activity_time ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:DeviceTypeEnum ; owl:onProperty nmdc:device_type ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:QuantityValue ; + owl:onProperty nmdc:activity_time ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; @@ -14306,7 +14302,7 @@ nmdc:name a owl:ObjectProperty, rdfs:range linkml:String ; skos:definition "A human readable label for an entity" . -MIXS:BioticRelationshipEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "biotic_relationship_enum" ; owl:unionOf ( ) ; @@ -14315,7 +14311,7 @@ MIXS:BioticRelationshipEnum a owl:Class, , . -MIXS:BuildingSettingEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "building_setting_enum" ; owl:unionOf ( ) ; @@ -14324,7 +14320,7 @@ MIXS:BuildingSettingEnum a owl:Class, , . -MIXS:DoorCompTypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "door_comp_type_enum" ; owl:unionOf ( ) ; @@ -14333,7 +14329,7 @@ MIXS:DoorCompTypeEnum a owl:Class, , . -MIXS:DoorLocEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "door_loc_enum" ; owl:unionOf ( ) ; @@ -14342,7 +14338,7 @@ MIXS:DoorLocEnum a owl:Class, , . -MIXS:FreqCleanEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "freq_clean_enum" ; owl:unionOf ( ) ; @@ -14353,7 +14349,7 @@ MIXS:FreqCleanEnum a owl:Class, , . -MIXS:GrowthHabitEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "growth_habit_enum" ; owl:unionOf ( ) ; @@ -14362,7 +14358,7 @@ MIXS:GrowthHabitEnum a owl:Class, , . -MIXS:HandidnessEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "handidness_enum" ; owl:unionOf ( ) ; @@ -14371,7 +14367,7 @@ MIXS:HandidnessEnum a owl:Class, , . -MIXS:HeatDelivLocEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "heat_deliv_loc_enum" ; owl:unionOf ( ) ; @@ -14380,7 +14376,7 @@ MIXS:HeatDelivLocEnum a owl:Class, , . -MIXS:HostSexEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "host_sex_enum" ; owl:unionOf ( ) ; @@ -14389,7 +14385,7 @@ MIXS:HostSexEnum a owl:Class, , . -MIXS:OccupDocumentEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "occup_document_enum" ; owl:unionOf ( ) ; @@ -14398,7 +14394,7 @@ MIXS:OccupDocumentEnum a owl:Class, , . -MIXS:QuadPosEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "quad_pos_enum" ; owl:unionOf ( ) ; @@ -14407,7 +14403,7 @@ MIXS:QuadPosEnum a owl:Class, , . -MIXS:SampFloorEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "samp_floor_enum" ; owl:unionOf ( ) ; @@ -14416,7 +14412,7 @@ MIXS:SampFloorEnum a owl:Class, , . -MIXS:SeasonUseEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "season_use_enum" ; owl:unionOf ( ) ; @@ -14425,7 +14421,7 @@ MIXS:SeasonUseEnum a owl:Class, , . -MIXS:SedimentTypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "sediment_type_enum" ; owl:unionOf ( ) ; @@ -14434,7 +14430,7 @@ MIXS:SedimentTypeEnum a owl:Class, , . -MIXS:TidalStageEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "tidal_stage_enum" ; owl:unionOf ( ) ; @@ -14443,7 +14439,7 @@ MIXS:TidalStageEnum a owl:Class, , . -MIXS:WallLocEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "wall_loc_enum" ; owl:unionOf ( ) ; @@ -14452,7 +14448,7 @@ MIXS:WallLocEnum a owl:Class, , . -MIXS:WindowLocEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "window_loc_enum" ; owl:unionOf ( ) ; @@ -14475,7 +14471,11 @@ nmdc:ControlledIdentifiedTermValue a owl:Class, nmdc:CreditAssociation a owl:Class, linkml:ClassDefinition ; rdfs:label "CreditAssociation" ; - rdfs:subClassOf [ a owl:Class ; + rdfs:subClassOf [ a owl:Restriction ; + owl:onClass nmdc:PersonValue ; + owl:onProperty prov:agent ; + owl:qualifiedCardinality 1 ], + [ a owl:Class ; owl:intersectionOf ( [ a owl:Restriction ; owl:allValuesFrom nmdc:CreditEnum ; owl:onProperty nmdc:applied_roles ] [ a owl:Restriction ; @@ -14483,23 +14483,19 @@ nmdc:CreditAssociation a owl:Class, owl:someValuesFrom nmdc:CreditEnum ] ) ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:CreditEnum ; - owl:onProperty prov:hadRole ], - [ a owl:Restriction ; - owl:onClass nmdc:PersonValue ; - owl:onProperty prov:agent ; - owl:qualifiedCardinality 1 ], + owl:onClass linkml:String ; + owl:onProperty nmdc:type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:type ] ; + owl:onClass nmdc:CreditEnum ; + owl:onProperty prov:hadRole ] ; skos:altLabel "associated researchers", "credit table", "study role" ; skos:definition "This class supports binding associated researchers to studies. There will be at least a slot for a CRediT Contributor Role (https://casrai.org/credit/) and for a person value Specifically see the associated researchers tab on the NMDC_SampleMetadata-V4_CommentsForUpdates at https://docs.google.com/spreadsheets/d/1INlBo5eoqn2efn4H2P2i8rwRBtnbDVTqXrochJEAPko/edit#gid=0" ; skos:exactMatch prov:Association . -MIXS:CeilCondEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "ceil_cond_enum" ; owl:unionOf ( ) ; @@ -14509,7 +14505,7 @@ MIXS:CeilCondEnum a owl:Class, , . -MIXS:DoorCondEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "door_cond_enum" ; owl:unionOf ( ) ; @@ -14519,7 +14515,7 @@ MIXS:DoorCondEnum a owl:Class, , . -MIXS:DoorTypeMetalEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "door_type_metal_enum" ; owl:unionOf ( ) ; @@ -14529,7 +14525,7 @@ MIXS:DoorTypeMetalEnum a owl:Class, , . -MIXS:FloorCondEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "floor_cond_enum" ; owl:unionOf ( ) ; @@ -14539,7 +14535,7 @@ MIXS:FloorCondEnum a owl:Class, , . -MIXS:HeatCoolTypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "heat_cool_type_enum" ; owl:unionOf ( ) ; @@ -14549,7 +14545,7 @@ MIXS:HeatCoolTypeEnum a owl:Class, , . -MIXS:IntWallCondEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "int_wall_cond_enum" ; owl:unionOf ( ) ; @@ -14559,7 +14555,7 @@ MIXS:IntWallCondEnum a owl:Class, , . -MIXS:LightTypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "light_type_enum" ; owl:unionOf ( ) ; @@ -14569,7 +14565,7 @@ MIXS:LightTypeEnum a owl:Class, , . -MIXS:ProfilePositionEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "profile_position_enum" ; owl:unionOf ( ) ; @@ -14579,7 +14575,7 @@ MIXS:ProfilePositionEnum a owl:Class, , . -MIXS:SampCaptStatusEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "samp_capt_status_enum" ; owl:unionOf ( ) ; @@ -14589,7 +14585,7 @@ MIXS:SampCaptStatusEnum a owl:Class, , . -MIXS:SampSubtypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "samp_subtype_enum" ; owl:unionOf ( ) ; @@ -14599,7 +14595,7 @@ MIXS:SampSubtypeEnum a owl:Class, , . -MIXS:ShadingDeviceCondEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "shading_device_cond_enum" ; owl:unionOf ( ) ; @@ -14609,7 +14605,7 @@ MIXS:ShadingDeviceCondEnum a owl:Class, , . -MIXS:SrDepEnvEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "sr_dep_env_enum" ; owl:unionOf ( ) ; @@ -14619,7 +14615,7 @@ MIXS:SrDepEnvEnum a owl:Class, , . -MIXS:SrKerogTypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "sr_kerog_type_enum" ; owl:unionOf ( ) ; @@ -14629,7 +14625,7 @@ MIXS:SrKerogTypeEnum a owl:Class, , . -MIXS:SrLithologyEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "sr_lithology_enum" ; owl:unionOf ( ) ; @@ -14639,7 +14635,7 @@ MIXS:SrLithologyEnum a owl:Class, , . -MIXS:TrainStatLocEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "train_stat_loc_enum" ; owl:unionOf ( ) ; @@ -14649,7 +14645,7 @@ MIXS:TrainStatLocEnum a owl:Class, , . -MIXS:WaterFeatTypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "water_feat_type_enum" ; owl:unionOf ( ) ; @@ -14659,7 +14655,7 @@ MIXS:WaterFeatTypeEnum a owl:Class, , . -MIXS:WindowCondEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "window_cond_enum" ; owl:unionOf ( ) ; @@ -14669,7 +14665,7 @@ MIXS:WindowCondEnum a owl:Class, , . -MIXS:WindowMatEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "window_mat_enum" ; owl:unionOf ( ) ; @@ -14679,7 +14675,7 @@ MIXS:WindowMatEnum a owl:Class, , . -MIXS:WindowVertPosEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "window_vert_pos_enum" ; owl:unionOf ( ) ; @@ -14730,6 +14726,13 @@ nmdc:PersonValue a owl:Class, linkml:ClassDefinition ; rdfs:label "PersonValue" ; rdfs:subClassOf [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:websites ], + [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:orcid ], @@ -14745,17 +14748,10 @@ nmdc:PersonValue a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:profile_image_url ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:websites ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty schema:email ], nmdc:AttributeValue ; skos:definition "An attribute value representing a person" . -MIXS:DoorMoveEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "door_move_enum" ; owl:unionOf ( ) ; @@ -14766,7 +14762,7 @@ MIXS:DoorMoveEnum a owl:Class, , . -MIXS:DrainageClassEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "drainage_class_enum" ; owl:unionOf ( ) ; @@ -14777,7 +14773,7 @@ MIXS:DrainageClassEnum a owl:Class, , . -MIXS:FilterTypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "filter_type_enum" ; owl:unionOf ( ) ; @@ -14788,7 +14784,7 @@ MIXS:FilterTypeEnum a owl:Class, , . -MIXS:GenderRestroomEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "gender_restroom_enum" ; owl:unionOf ( ) ; @@ -14799,7 +14795,7 @@ MIXS:GenderRestroomEnum a owl:Class, , . -MIXS:HcProducedEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "hc_produced_enum" ; owl:unionOf ( ) ; @@ -14810,7 +14806,7 @@ MIXS:HcProducedEnum a owl:Class, , . -MIXS:RoomCondtEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "room_condt_enum" ; owl:unionOf ( ) ; @@ -14821,7 +14817,7 @@ MIXS:RoomCondtEnum a owl:Class, , . -MIXS:SampDisStageEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "samp_dis_stage_enum" ; owl:unionOf ( ) ; @@ -14832,7 +14828,7 @@ MIXS:SampDisStageEnum a owl:Class, , . -MIXS:SpecificEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "specific_enum" ; owl:unionOf ( ) ; @@ -14843,7 +14839,7 @@ MIXS:SpecificEnum a owl:Class, , . -MIXS:WallConstTypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "wall_const_type_enum" ; owl:unionOf ( ) ; @@ -14854,7 +14850,7 @@ MIXS:WallConstTypeEnum a owl:Class, , . -MIXS:WallSurfTreatmentEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "wall_surf_treatment_enum" ; owl:unionOf ( ) ; @@ -14870,2316 +14866,2316 @@ nmdc:Biosample a owl:Class, rdfs:label "Biosample" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000125 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:ecosystem ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000094 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:ecosystem_subtype ], + owl:onClass linkml:Double ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:TidalStageEnum ; - owl:onProperty MIXS:0000750 ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000038 ], - [ a owl:Restriction ; - owl:allValuesFrom MIXS:SurfAirContEnum ; - owl:onProperty MIXS:0000759 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000274 ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:micro_biomass_n_meth ], + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty MIXS:0000233 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty nmdc:zinc ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000508 ], + owl:onClass nmdc:TimestampValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000423 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty MIXS:0001086 ], + owl:onProperty nmdc:sample_shipped ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty MIXS:0000336 ], + owl:allValuesFrom linkml:Uriorcurie ; + owl:onProperty nmdc:emsl_biosample_identifiers ], [ a owl:Restriction ; owl:allValuesFrom nmdc:TextValue ; - owl:onProperty MIXS:0000560 ], + owl:onProperty ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:WindowHorizPosEnum ; - owl:onProperty MIXS:0000851 ], + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000221 ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000516 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:rna_seq_project ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty MIXS:0000206 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty MIXS:0000323 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:ControlledTermValue ; - owl:onProperty MIXS:0000016 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000432 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000238 ], + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:alternative_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:RelToOxygenEnum ; - owl:onProperty MIXS:0000015 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000227 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:WallLocEnum ; - owl:onProperty MIXS:0000843 ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:filter_method ], + owl:onProperty nmdc:rna_isolate_meth ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000217 ], + owl:allValuesFrom nmdc:AnalysisTypeEnum ; + owl:onProperty nmdc:analysis_type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:dna_container_id ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty MIXS:0001318 ], + owl:onProperty nmdc:collection_time ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000177 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000337 ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000634 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:rna_sample_name ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000757 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:dna_isolate_meth ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:CeilCondEnum ; - owl:onProperty MIXS:0000779 ], + owl:onClass linkml:String ; + owl:onProperty nmdc:add_date ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000145 ], + owl:onClass nmdc:TextValue ; + owl:onProperty nmdc:env_package ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:RnaSampleFormatEnum ; - owl:onProperty nmdc:rna_sample_format ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000315 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:dna_samp_id ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:CeilFinishMatEnum ; - owl:onProperty MIXS:0000780 ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty MIXS:0000561 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000844 ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty MIXS:0000872 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000097 ], + owl:onClass linkml:String ; + owl:onProperty nmdc:dna_absorb1 ], [ a owl:Restriction ; owl:allValuesFrom nmdc:TextValue ; - owl:onProperty MIXS:0000559 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:HcrGeolAgeEnum ; - owl:onProperty MIXS:0000993 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000419 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:ControlledTermValue ; - owl:onProperty MIXS:0001043 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000653 ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000104 ], + owl:onClass linkml:String ; + owl:onProperty nmdc:isotope_exposure ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000131 ], + owl:onClass linkml:String ; + owl:onProperty nmdc:proposal_rna ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000129 ], + owl:onClass linkml:String ; + owl:onProperty nmdc:dna_project_contact ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:RelSampLocEnum ; - owl:onProperty MIXS:0000821 ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom nmdc:TextValue ; - owl:onProperty MIXS:0000150 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000139 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000179 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000525 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:ControlledTermValue ; - owl:onProperty MIXS:0000874 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:non_microb_biomass ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000247 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:dna_seq_project ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:WallSurfTreatmentEnum ; - owl:onProperty MIXS:0000845 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom nmdc:TextValue ; - owl:onProperty MIXS:0000556 ], + owl:onProperty ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:onClass nmdc:ControlledIdentifiedTermValue ; - owl:onProperty MIXS:0000013 ; + owl:onProperty ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0001012 ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty MIXS:0000216 ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000205 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000704 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000232 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:WallFinishMatEnum ; - owl:onProperty MIXS:0000842 ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000421 ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty MIXS:0000180 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000409 ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom MIXS:LightTypeEnum ; - owl:onProperty MIXS:0000769 ], + owl:maxQualifiedCardinality 1 ; + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:SampSubtypeEnum ; - owl:onProperty MIXS:0000999 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0001038 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000141 ], + owl:onClass nmdc:SampleTypeEnum ; + owl:onProperty nmdc:sample_type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:FieldResearchSite ; - owl:onProperty nmdc:collected_from ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000244 ], + owl:onClass nmdc:DnaDnaseEnum ; + owl:onProperty nmdc:dna_dnase ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:start_date_inc ], - [ a owl:Restriction ; - owl:onClass nmdc:ControlledIdentifiedTermValue ; - owl:onProperty MIXS:0000014 ; - owl:qualifiedCardinality 1 ], + owl:onProperty nmdc:community ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000196 ], + owl:allValuesFrom ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000140 ], + owl:onProperty ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000148 ], + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000300 ], + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000252 ], + owl:onClass linkml:String ; + owl:onProperty nmdc:rna_container_id ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:BioticRelationshipEnum ; 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- owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:SrDepEnvEnum ; - owl:onProperty MIXS:0000996 ], + owl:allValuesFrom linkml:Uriorcurie ; + owl:onProperty nmdc:insdc_biosample_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000833 ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty MIXS:0000652 ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:DoorCompTypeEnum ; - owl:onProperty MIXS:0000795 ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty MIXS:0000558 ], + owl:onClass linkml:String ; + owl:onProperty nmdc:dna_organisms ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0001061 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000855 ], + owl:onClass nmdc:ControlledTermValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000192 ], + owl:onProperty ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty MIXS:0000235 ], + owl:allValuesFrom ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000291 ], + owl:onClass linkml:String ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000327 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:DoorDirectEnum ; - owl:onProperty MIXS:0000789 ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000772 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000228 ], + owl:onClass nmdc:RnaContTypeEnum ; + owl:onProperty nmdc:rna_cont_type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000156 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000193 ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:QuantityValue ; - owl:onProperty MIXS:0000103 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000259 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:dna_organisms ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:SampFloorEnum ; - owl:onProperty MIXS:0000828 ], + owl:onClass linkml:String ; + owl:onProperty nmdc:rna_seq_project_pi ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:BiosampleCategoryEnum ; - owl:onProperty nmdc:biosample_categories ], + owl:maxQualifiedCardinality 1 ; + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000126 ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000052 ], + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom nmdc:TextValue ; - owl:onProperty MIXS:0000754 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000351 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000251 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000144 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty MIXS:0001107 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000155 ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:dna_absorb1 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000250 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty MIXS:0001225 ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:DoorTypeWoodEnum ; - owl:onProperty MIXS:0000797 ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:FaoClassEnum ; - owl:onProperty MIXS:0001083 ], + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000168 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000127 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty MIXS:0000245 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000502 ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:RelToOxygenEnum ; - owl:onProperty MIXS:0000753 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty MIXS:0000108 ], + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:ControlledTermValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000646 ], + owl:onClass linkml:String ; + owl:onProperty nmdc:rna_absorb2 ], [ a owl:Restriction ; owl:allValuesFrom nmdc:TextValue ; - owl:onProperty MIXS:0001069 ], + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000191 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Double ; - owl:onProperty MIXS:0000771 ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000438 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass MIXS:SampCollectPointEnum ; - owl:onProperty MIXS:0001015 ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty MIXS:0000660 ], + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:ControlledTermValue ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:ControlledTermValue ; - owl:onProperty MIXS:0000751 ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:rna_samp_id ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty MIXS:0000684 ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty MIXS:0000575 ], + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:proport_woa_temperature ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:dna_concentration ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], nmdc:MaterialEntity ; skos:altLabel "biospecimen", "material sample", @@ -17210,7 +17206,7 @@ nmdc:insdc_identifiers a owl:ObjectProperty, skos:note "note that we deliberately abstract over which of the partner databases accepted the initial submission", "the first letter of the accession indicates which partner accepted the initial submission: E for ENA, D for DDBJ, or S or N for NCBI." . -MIXS:CeilTypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "ceil_type_enum" ; owl:unionOf ( ) ; @@ -17222,7 +17218,7 @@ MIXS:CeilTypeEnum a owl:Class, , . -MIXS:FloorStrucEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "floor_struc_enum" ; owl:unionOf ( ) ; @@ -17234,7 +17230,7 @@ MIXS:FloorStrucEnum a owl:Class, , . -MIXS:PlantGrowthMedEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "plant_growth_med_enum" ; owl:unionOf ( ) ; @@ -17248,7 +17244,7 @@ MIXS:PlantGrowthMedEnum a owl:Class, , . -MIXS:SampCollectPointEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "samp_collect_point_enum" ; owl:unionOf ( ) ; @@ -17260,7 +17256,7 @@ MIXS:SampCollectPointEnum a owl:Class, , . -MIXS:SoilHorizonEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "soil_horizon_enum" ; owl:unionOf ( ) ; @@ -17272,7 +17268,7 @@ MIXS:SoilHorizonEnum a owl:Class, , . -MIXS:VisMediaEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "vis_media_enum" ; owl:unionOf ( ) ; @@ -17284,7 +17280,7 @@ MIXS:VisMediaEnum a owl:Class, , . -MIXS:WeekdayEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "weekday_enum" ; owl:unionOf ( ) ; @@ -17302,7 +17298,7 @@ nmdc:GeneProduct a owl:Class, rdfs:subClassOf nmdc:NamedThing ; skos:definition "A molecule encoded by a gene that has an evolved function" ; skos:editorialNote "we may include a more general gene product class in future to allow for ncRNA annotation" ; - skos:exactMatch biolink:GeneProduct . + skos:exactMatch . nmdc:MaterialSample a owl:Class, linkml:ClassDefinition ; @@ -17315,7 +17311,7 @@ nmdc:MaterialSample a owl:Class, nmdc:NamedThing ; skos:altLabel "Material entity" . -MIXS:BiolStatEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "biol_stat_enum" ; owl:unionOf ( ) ; @@ -17328,7 +17324,7 @@ MIXS:BiolStatEnum a owl:Class, , . -MIXS:DrawingsEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "drawings_enum" ; owl:unionOf ( ) ; @@ -17341,7 +17337,7 @@ MIXS:DrawingsEnum a owl:Class, , . -MIXS:ExtWallOrientEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "ext_wall_orient_enum" ; owl:unionOf ( ) ; @@ -17354,7 +17350,7 @@ MIXS:ExtWallOrientEnum a owl:Class, , . -MIXS:ExtWindowOrientEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "ext_window_orient_enum" ; owl:unionOf ( ) ; @@ -17367,7 +17363,7 @@ MIXS:ExtWindowOrientEnum a owl:Class, , . -MIXS:HcrEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "hcr_enum" ; owl:unionOf ( ) ; @@ -17380,7 +17376,7 @@ MIXS:HcrEnum a owl:Class, , . -MIXS:IndoorSpaceEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "indoor_space_enum" ; owl:unionOf ( ) ; @@ -17393,7 +17389,7 @@ MIXS:IndoorSpaceEnum a owl:Class, , . -MIXS:IndoorSurfEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "indoor_surf_enum" ; owl:unionOf ( ) ; @@ -17406,7 +17402,7 @@ MIXS:IndoorSurfEnum a owl:Class, , . -MIXS:RelToOxygenEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "rel_to_oxygen_enum" ; owl:unionOf ( ) ; @@ -17418,7 +17414,7 @@ MIXS:RelToOxygenEnum a owl:Class, , . -MIXS:SurfAirContEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "surf_air_cont_enum" ; owl:unionOf ( ) ; @@ -17431,12 +17427,12 @@ MIXS:SurfAirContEnum a owl:Class, , . -MIXS:nucleic_acid_sequence_source_field a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "nucleic acid sequence source field" ; rdfs:range linkml:String . -MIXS:sequencing_field a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "sequencing field" ; rdfs:range linkml:String . @@ -17445,37 +17441,37 @@ nmdc:Activity a owl:Class, linkml:ClassDefinition ; rdfs:label "Activity" ; rdfs:subClassOf [ a owl:Restriction ; + owl:onClass linkml:String ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:Activity ; owl:onProperty nmdc:was_informed_by ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Datetime ; - owl:onProperty nmdc:started_at_time ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:used ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:name ], [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], + owl:onProperty nmdc:used ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Datetime ; - owl:onProperty nmdc:ended_at_time ], + owl:onProperty nmdc:started_at_time ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:Agent ; - owl:onProperty nmdc:was_associated_with ] ; + owl:onProperty nmdc:was_associated_with ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Datetime ; + owl:onProperty nmdc:ended_at_time ] ; skos:definition "a provence-generating activity" ; skos:exactMatch prov:Activity . -MIXS:FloorWaterMoldEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "floor_water_mold_enum" ; owl:unionOf ( ) ; @@ -17489,7 +17485,7 @@ MIXS:FloorWaterMoldEnum a owl:Class, , . -MIXS:MechStrucEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "mech_struc_enum" ; owl:unionOf ( ) ; @@ -17503,7 +17499,7 @@ MIXS:MechStrucEnum a owl:Class, , . -MIXS:RoomSampPosEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "room_samp_pos_enum" ; owl:unionOf ( ) ; @@ -17517,7 +17513,7 @@ MIXS:RoomSampPosEnum a owl:Class, , . -MIXS:SampWeatherEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "samp_weather_enum" ; owl:unionOf ( ) ; @@ -17531,7 +17527,7 @@ MIXS:SampWeatherEnum a owl:Class, , . -MIXS:TillageEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "tillage_enum" ; owl:unionOf ( ) ; @@ -17545,13 +17541,13 @@ MIXS:TillageEnum a owl:Class, , . -MIXS:environment_field a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "environment field" ; rdfs:range linkml:String ; skos:definition "field describing environmental aspect of a sample" . -MIXS:CeilFinishMatEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "ceil_finish_mat_enum" ; owl:unionOf ( ) ; @@ -17566,7 +17562,7 @@ MIXS:CeilFinishMatEnum a owl:Class, , . -MIXS:DoorMatEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "door_mat_enum" ; owl:unionOf ( ) ; @@ -17581,7 +17577,7 @@ MIXS:DoorMatEnum a owl:Class, , . -MIXS:DoorTypeWoodEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "door_type_wood_enum" ; owl:unionOf ( ) ; @@ -17596,7 +17592,7 @@ MIXS:DoorTypeWoodEnum a owl:Class, , . -MIXS:RoomConnectedEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "room_connected_enum" ; owl:unionOf ( ) ; @@ -17612,7 +17608,7 @@ MIXS:RoomConnectedEnum a owl:Class, , . -MIXS:WallFinishMatEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "wall_finish_mat_enum" ; owl:unionOf ( ) ; @@ -17635,7 +17631,7 @@ nmdc:TimestampValue a owl:Class, skos:definition "A value that is a timestamp. The range should be ISO-8601" ; skos:editorialNote "removed the following slots: year, month, day" . -MIXS:ShadingDeviceTypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "shading_device_type_enum" ; owl:unionOf ( ) ; @@ -17657,16 +17653,16 @@ nmdc:AttributeValue a owl:Class, rdfs:label "AttributeValue" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:Activity ; - owl:onProperty nmdc:was_generated_by ], + owl:onClass linkml:String ; + owl:onProperty nmdc:has_raw_value ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:type ], + owl:onClass nmdc:Activity ; + owl:onProperty nmdc:was_generated_by ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:has_raw_value ] ; + owl:onProperty nmdc:type ] ; skos:definition "The value for any value of a attribute for a sample. This object can hold both the un-normalized atomic value and the structured value" . nmdc:DnaSampleFormatEnum a owl:Class, @@ -17703,7 +17699,7 @@ nmdc:RnaSampleFormatEnum a owl:Class, , . -MIXS:BuildDocsEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "build_docs_enum" ; owl:unionOf ( ) ; @@ -17721,7 +17717,7 @@ MIXS:BuildDocsEnum a owl:Class, , . -MIXS:BuildOccupTypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "build_occup_type_enum" ; owl:unionOf ( ) ; @@ -17739,7 +17735,7 @@ MIXS:BuildOccupTypeEnum a owl:Class, , . -MIXS:CeilTextureEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "ceil_texture_enum" ; owl:unionOf ( ) ; @@ -17757,7 +17753,7 @@ MIXS:CeilTextureEnum a owl:Class, , . -MIXS:LithologyEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "lithology_enum" ; owl:unionOf ( ) ; @@ -17782,10 +17778,26 @@ nmdc:WorkflowExecutionActivity a owl:Class, owl:onClass linkml:String ; owl:onProperty nmdc:type ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:WorkflowExecutionActivity ; + owl:onProperty nmdc:was_associated_with ], [ a owl:Restriction ; owl:onClass linkml:Datetime ; owl:onProperty nmdc:ended_at_time ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass linkml:String ; + owl:onProperty nmdc:execution_resource ; + owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass linkml:Datetime ; + owl:onProperty nmdc:started_at_time ; + owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass linkml:String ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], [ a owl:Class ; owl:intersectionOf ( [ a owl:Restriction ; owl:allValuesFrom nmdc:NamedThing ; @@ -17793,11 +17805,8 @@ nmdc:WorkflowExecutionActivity a owl:Class, owl:onProperty nmdc:has_input ; owl:someValuesFrom nmdc:NamedThing ] ) ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:NamedThing ; - owl:onProperty dcterms:isPartOf ], - [ a owl:Restriction ; - owl:onClass linkml:String ; - owl:onProperty nmdc:id ; + owl:onClass nmdc:Activity ; + owl:onProperty nmdc:was_informed_by ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; @@ -17805,30 +17814,17 @@ nmdc:WorkflowExecutionActivity a owl:Class, owl:onProperty nmdc:version ], [ a owl:Restriction ; owl:onClass linkml:String ; - owl:onProperty nmdc:execution_resource ; + owl:onProperty nmdc:git_url ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:WorkflowExecutionActivity ; - owl:onProperty nmdc:was_associated_with ], - [ a owl:Restriction ; - owl:onClass linkml:Datetime ; - owl:onProperty nmdc:started_at_time ; - owl:qualifiedCardinality 1 ], + owl:allValuesFrom nmdc:NamedThing ; + owl:onProperty dcterms:isPartOf ], [ a owl:Class ; owl:intersectionOf ( [ a owl:Restriction ; owl:allValuesFrom nmdc:NamedThing ; owl:onProperty nmdc:has_output ] [ a owl:Restriction ; owl:onProperty nmdc:has_output ; owl:someValuesFrom nmdc:NamedThing ] ) ], - [ a owl:Restriction ; - owl:onClass nmdc:Activity ; - owl:onProperty nmdc:was_informed_by ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:onClass linkml:String ; - owl:onProperty nmdc:git_url ; - owl:qualifiedCardinality 1 ], nmdc:Activity ; skos:altLabel "analysis" ; skos:definition "Represents an instance of an execution of a particular workflow" ; @@ -17836,7 +17832,7 @@ nmdc:WorkflowExecutionActivity a owl:Class, "inlining of was_associated_with values allows for collections (strings?) of WorkflowExecutionActivity id values" ; skos:note "Each instance of this (and all other) activities is a distinct run with start and stop times, potentially with different inputs and outputs" . -MIXS:WallTextureEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "wall_texture_enum" ; owl:unionOf ( ) ; @@ -17855,7 +17851,7 @@ MIXS:WallTextureEnum a owl:Class, , . -MIXS:SurfMaterialEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "surf_material_enum" ; owl:unionOf ( ) ; @@ -17901,7 +17897,7 @@ nmdc:type a owl:ObjectProperty, linkml:examples "Example(value='nmdc:Biosample', description=None)", "Example(value='nmdc:Study', description=None)" . -MIXS:DeposEnvEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "depos_env_enum" ; owl:unionOf ( ) ; @@ -17922,7 +17918,7 @@ MIXS:DeposEnvEnum a owl:Class, , . -MIXS:FloorFinishMatEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "floor_finish_mat_enum" ; owl:unionOf ( ) ; @@ -17945,7 +17941,7 @@ MIXS:FloorFinishMatEnum a owl:Class, , . -MIXS:HcrGeolAgeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "hcr_geol_age_enum" ; owl:unionOf ( ) ; @@ -17968,7 +17964,7 @@ MIXS:HcrGeolAgeEnum a owl:Class, , . -MIXS:SrGeolAgeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "sr_geol_age_enum" ; owl:unionOf ( ) ; @@ -18017,82 +18013,82 @@ nmdc:Database a owl:Class, linkml:ClassDefinition ; rdfs:label "Database" ; rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom nmdc:DataObject ; - owl:onProperty nmdc:data_object_set ], - [ a owl:Restriction ; owl:allValuesFrom nmdc:OmicsProcessing ; owl:onProperty nmdc:omics_processing_set ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:ReactionActivity ; - owl:onProperty nmdc:reaction_activity_set ], [ a owl:Restriction ; owl:allValuesFrom nmdc:MetagenomeAnnotationActivity ; owl:onProperty nmdc:metagenome_annotation_activity_set ], [ a owl:Restriction ; owl:allValuesFrom nmdc:NomAnalysisActivity ; owl:onProperty nmdc:nom_analysis_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:FunctionalAnnotation ; + owl:onProperty nmdc:functional_annotation_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MetatranscriptomeActivity ; + owl:onProperty nmdc:metatranscriptome_activity_set ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:etl_software_version ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:date_created ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:MetagenomeAssembly ; - owl:onProperty nmdc:metagenome_assembly_set ], + owl:allValuesFrom nmdc:MetagenomeSequencingActivity ; + owl:onProperty nmdc:metagenome_sequencing_activity_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:MetatranscriptomeActivity ; - owl:onProperty nmdc:metatranscriptome_activity_set ], + owl:allValuesFrom nmdc:MaterialSample ; + owl:onProperty nmdc:material_sample_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:FieldResearchSite ; - owl:onProperty nmdc:field_research_site_set ], + owl:allValuesFrom nmdc:ReadBasedTaxonomyAnalysisActivity ; + owl:onProperty nmdc:read_based_taxonomy_analysis_activity_set ], [ a owl:Restriction ; owl:allValuesFrom nmdc:DissolvingActivity ; owl:onProperty nmdc:dissolving_activity_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:MaterialSamplingActivity ; - owl:onProperty nmdc:material_sampling_activity_set ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:FunctionalAnnotation ; - owl:onProperty nmdc:functional_annotation_set ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:CollectingBiosamplesFromSite ; - owl:onProperty nmdc:collecting_biosamples_from_site_set ], + owl:allValuesFrom nmdc:DataObject ; + owl:onProperty nmdc:data_object_set ], [ a owl:Restriction ; owl:allValuesFrom nmdc:MagsAnalysisActivity ; owl:onProperty nmdc:mags_activity_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:WorkflowExecutionActivity ; - owl:onProperty nmdc:activity_set ], + owl:allValuesFrom nmdc:MetabolomicsAnalysisActivity ; + owl:onProperty nmdc:metabolomics_analysis_activity_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:MetagenomeSequencingActivity ; - owl:onProperty nmdc:metagenome_sequencing_activity_set ], + owl:allValuesFrom nmdc:FieldResearchSite ; + owl:onProperty nmdc:field_research_site_set ], [ a owl:Restriction ; owl:allValuesFrom nmdc:ReadQcAnalysisActivity ; owl:onProperty nmdc:read_qc_analysis_activity_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:MaterialSample ; - owl:onProperty nmdc:material_sample_set ], + owl:allValuesFrom nmdc:ReactionActivity ; + owl:onProperty nmdc:reaction_activity_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:Study ; - owl:onProperty nmdc:study_set ], + owl:allValuesFrom nmdc:MaterialSamplingActivity ; + owl:onProperty nmdc:material_sampling_activity_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:MetabolomicsAnalysisActivity ; - owl:onProperty nmdc:metabolomics_analysis_activity_set ], + owl:allValuesFrom nmdc:WorkflowExecutionActivity ; + owl:onProperty nmdc:activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MetaproteomicsAnalysisActivity ; + owl:onProperty nmdc:metaproteomics_analysis_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:CollectingBiosamplesFromSite ; + owl:onProperty nmdc:collecting_biosamples_from_site_set ], [ a owl:Restriction ; owl:allValuesFrom nmdc:GenomeFeature ; owl:onProperty nmdc:genome_feature_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Study ; + owl:onProperty nmdc:study_set ], [ a owl:Restriction ; owl:allValuesFrom nmdc:Biosample ; owl:onProperty nmdc:biosample_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:MetaproteomicsAnalysisActivity ; - owl:onProperty nmdc:metaproteomics_analysis_activity_set ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:etl_software_version ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:ReadBasedTaxonomyAnalysisActivity ; - owl:onProperty nmdc:read_based_taxonomy_analysis_activity_set ] ; + owl:allValuesFrom nmdc:MetagenomeAssembly ; + owl:onProperty nmdc:metagenome_assembly_set ] ; skos:altLabel "NMDC metadata object" ; skos:definition "An abstract holder for any set of metadata and data. It does not need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest" . @@ -18106,7 +18102,7 @@ nmdc:ControlledTermValue a owl:Class, nmdc:AttributeValue ; skos:definition "A controlled term or class from an ontology" . -MIXS:RoomTypeEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "room_type_enum" ; owl:unionOf ( ) ; @@ -18152,7 +18148,7 @@ nmdc:metagenome_assembly_parameter a owl:ObjectProperty, rdfs:label "metagenome_assembly_parameter" ; rdfs:range linkml:String . -MIXS:FaoClassEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "fao_class_enum" ; owl:unionOf ( ) ; @@ -18183,7 +18179,7 @@ MIXS:FaoClassEnum a owl:Class, , . -MIXS:PlantSexEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "plant_sex_enum" ; owl:unionOf ( ) ; @@ -18221,23 +18217,23 @@ nmdc:NamedThing a owl:Class, linkml:ClassDefinition ; rdfs:label "NamedThing" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:name ], - [ a owl:Restriction ; owl:allValuesFrom linkml:String ; owl:onProperty nmdc:alternative_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty dcterms:description ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:name ], [ a owl:Restriction ; owl:onClass linkml:String ; owl:onProperty nmdc:id ; owl:qualifiedCardinality 1 ] ; skos:definition "a databased entity or concept/class" . -MIXS:CurLandUseEnum a owl:Class, + a owl:Class, linkml:EnumDefinition ; rdfs:label "cur_land_use_enum" ; owl:unionOf ( ) ; @@ -18350,17 +18346,13 @@ nmdc:QuantityValue a owl:Class, linkml:ClassDefinition ; rdfs:label "QuantityValue" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:has_raw_value ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; owl:onProperty nmdc:has_minimum_numeric_value ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:Unit ; - owl:onProperty nmdc:has_unit ], + owl:onClass linkml:String ; + owl:onProperty nmdc:has_raw_value ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Double ; @@ -18369,9 +18361,13 @@ nmdc:QuantityValue a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; owl:onProperty nmdc:has_maximum_numeric_value ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:Unit ; + owl:onProperty nmdc:has_unit ], nmdc:AttributeValue ; skos:definition "A simple quantity, e.g. 2cm" ; - skos:exactMatch schema:QuantityValue . + skos:exactMatch . nmdc:TextValue a owl:Class, linkml:ClassDefinition ; @@ -18383,7 +18379,7 @@ nmdc:TextValue a owl:Class, nmdc:AttributeValue ; skos:definition "A basic string value" . -MIXS:core_field a owl:ObjectProperty, + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "core field" ; rdfs:range linkml:String ; diff --git a/src/data/output/Database-functional-annotations.ttl b/src/data/output/Database-functional-annotations.ttl index 046ff86523..ac86e420d2 100644 --- a/src/data/output/Database-functional-annotations.ttl +++ b/src/data/output/Database-functional-annotations.ttl @@ -2,33 +2,33 @@ [] a nmdc:Database ; nmdc:functional_annotation_set [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "KEGG.REACTION:R00100" ], + nmdc:has_function "PFAM:PF11779" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "SUPFAM:SSF57615" ], + nmdc:has_function "PANTHER.FAMILY:PTHR12345" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "MetaCyc:RXN-14904" ], + nmdc:has_function "KEGG_PATHWAY:rsk00410" ], [ a nmdc:FunctionalAnnotation ; nmdc:has_function "RHEA:12345" ], - [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "SEED:Biotin_biosynthesis" ], [ a nmdc:FunctionalAnnotation ; nmdc:has_function "TIGRFAM:TIGR00010" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "KEGG.ORTHOLOGY:K00001" ], + nmdc:has_function "SUPFAM:SSF57615" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "PANTHER.FAMILY:PTHR12345" ], + nmdc:has_function "CATH:1.10.10.200" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "EGGNOG:veNOG12876" ], + nmdc:has_function "MetaNetX:MNXR101574" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "GO:0032571" ], + nmdc:has_function "KEGG.ORTHOLOGY:K00001" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "MetaNetX:MNXR101574" ], + nmdc:has_function "MetaCyc:RXN-14904" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "KEGG_PATHWAY:rsk00410" ], + nmdc:has_function "EGGNOG:veNOG12876" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "CATH:1.10.10.200" ], + nmdc:has_function "KEGG.REACTION:R00100" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "EC:1.1.1.1" ], + nmdc:has_function "SEED:Biotin_biosynthesis" ], + [ a nmdc:FunctionalAnnotation ; + nmdc:has_function "GO:0032571" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "PFAM:PF11779" ] . + nmdc:has_function "EC:1.1.1.1" ] . diff --git a/src/data/output/Database-mags-activities.ttl b/src/data/output/Database-mags-activities.ttl index c8e47487c6..51d5377113 100644 --- a/src/data/output/Database-mags-activities.ttl +++ b/src/data/output/Database-mags-activities.ttl @@ -17,16 +17,16 @@ nmdc:wfmag-99-5MiDJM a nmdc:MagsAnalysisActivity ; nmdc:input_contig_num 169782 ; nmdc:low_depth_contig_num 0 ; nmdc:mags_list [ a nmdc:MagBin ; - nmdc:bin_name "bins.1" ; + nmdc:bin_name "bins.2" ; nmdc:bin_quality "LQ" ; - nmdc:completeness "11.42"^^xsd:float ; - nmdc:contamination "0.21"^^xsd:float ; - nmdc:gene_count 250 ; + nmdc:completeness "51.25"^^xsd:float ; + nmdc:contamination "10.34"^^xsd:float ; + nmdc:gene_count 2548 ; nmdc:num_16s 0 ; nmdc:num_23s 0 ; nmdc:num_5s 1 ; - nmdc:num_t_rna 1 ; - nmdc:number_of_contig 52 ], + nmdc:num_t_rna 26 ; + nmdc:number_of_contig 426 ], [ a nmdc:MagBin ; nmdc:bin_name "bins.3" ; nmdc:bin_quality "LQ" ; @@ -39,16 +39,16 @@ nmdc:wfmag-99-5MiDJM a nmdc:MagsAnalysisActivity ; nmdc:num_t_rna 1 ; nmdc:number_of_contig 11 ], [ a nmdc:MagBin ; - nmdc:bin_name "bins.2" ; + nmdc:bin_name "bins.1" ; nmdc:bin_quality "LQ" ; - nmdc:completeness "51.25"^^xsd:float ; - nmdc:contamination "10.34"^^xsd:float ; - nmdc:gene_count 2548 ; + nmdc:completeness "11.42"^^xsd:float ; + nmdc:contamination "0.21"^^xsd:float ; + nmdc:gene_count 250 ; nmdc:num_16s 0 ; nmdc:num_23s 0 ; nmdc:num_5s 1 ; - nmdc:num_t_rna 26 ; - nmdc:number_of_contig 426 ] ; + nmdc:num_t_rna 1 ; + nmdc:number_of_contig 52 ] ; nmdc:name "MAGs activiity 1781_86101" ; nmdc:started_at_time "2021-01-10T00:00:00+00:00"^^xsd:dateTime ; nmdc:too_short_contig_num 159810 ; @@ -82,27 +82,27 @@ nmdc:wfmag-99-VOgM5i a nmdc:MagsAnalysisActivity ; nmdc:num_t_rna 5 ; nmdc:number_of_contig 74 ], [ a nmdc:MagBin ; - nmdc:bin_name "bins.1" ; + nmdc:bin_name "bins.3" ; nmdc:bin_quality "LQ" ; - nmdc:completeness "25.86"^^xsd:float ; + nmdc:completeness "17.61"^^xsd:float ; nmdc:contamination "0.0"^^xsd:float ; - nmdc:gene_count 401 ; + nmdc:gene_count 313 ; nmdc:num_16s 0 ; nmdc:num_23s 0 ; nmdc:num_5s 0 ; - nmdc:num_t_rna 4 ; - nmdc:number_of_contig 74 ], + nmdc:num_t_rna 7 ; + nmdc:number_of_contig 58 ], [ a nmdc:MagBin ; - nmdc:bin_name "bins.3" ; + nmdc:bin_name "bins.1" ; nmdc:bin_quality "LQ" ; - nmdc:completeness "17.61"^^xsd:float ; + nmdc:completeness "25.86"^^xsd:float ; nmdc:contamination "0.0"^^xsd:float ; - nmdc:gene_count 313 ; + nmdc:gene_count 401 ; nmdc:num_16s 0 ; nmdc:num_23s 0 ; nmdc:num_5s 0 ; - nmdc:num_t_rna 7 ; - nmdc:number_of_contig 58 ] ; + nmdc:num_t_rna 4 ; + nmdc:number_of_contig 74 ] ; nmdc:name "MAGs activiity 1781_86089" ; nmdc:started_at_time "2021-01-10T00:00:00+00:00"^^xsd:dateTime ; nmdc:too_short_contig_num 75364 ; diff --git a/src/data/output/Database-multiple-paths.json b/src/data/output/Database-multiple-paths.json new file mode 100644 index 0000000000..fab25c9459 --- /dev/null +++ b/src/data/output/Database-multiple-paths.json @@ -0,0 +1,81 @@ +{ + "biosample_set": [ + { + "id": "nmdc:bsm-99-dtTMNb", + "name": "real biosample from the field", + "part_of": [ + "gold:Gs0110115" + ], + "env_broad_scale": { + "has_raw_value": "ENVO:00002030", + "term": { + "id": "ENVO:00002030" + } + }, + "env_local_scale": { + "has_raw_value": "ENVO:00002169", + "term": { + "id": "ENVO:00002169" + } + }, + "env_medium": { + "has_raw_value": "ENVO:00005792", + "term": { + "id": "ENVO:00005792" + } + } + }, + { + "id": "nmdc:bsm-99-XYZ", + "name": "one DNA library, like an analytical sample", + "part_of": [ + "gold:Gs0110115" + ], + "env_broad_scale": { + "has_raw_value": "ENVO:00002030", + "term": { + "id": "ENVO:00002030" + } + }, + "env_local_scale": { + "has_raw_value": "ENVO:00002169", + "term": { + "id": "ENVO:00002169" + } + }, + "env_medium": { + "has_raw_value": "ENVO:00005792", + "term": { + "id": "ENVO:00005792" + } + } + } + ], + "omics_processing_set": [ + { + "id": "nmdc:omprc-99-zUCd5N", + "name": "a process in which a biosample was sequenced?", + "alternative_identifiers": [ + "gold:Gp0108335" + ], + "has_input": [ + "gold:Gb0108335" + ], + "add_date": "30-OCT-14 12.00.00.000000000 AM", + "mod_date": "22-MAY-20 06.13.12.927000000 PM", + "has_output": [ + "jgi:551a20d30d878525404e90d5" + ], + "ncbi_project_name": "Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3D", + "omics_type": { + "has_raw_value": "Metagenome" + }, + "part_of": [ + "gold:Gs0112340" + ], + "processing_institution": "JGI", + "type": "nmdc:OmicsProcessing" + } + ], + "@type": "Database" +} \ No newline at end of file diff --git a/src/data/output/Database-multiple-paths.ttl b/src/data/output/Database-multiple-paths.ttl new file mode 100644 index 0000000000..9cd64823ac --- /dev/null +++ b/src/data/output/Database-multiple-paths.ttl @@ -0,0 +1,58 @@ +@prefix ENVO: . +@prefix GOLD: . +@prefix MIXS: . +@prefix RetroRules: . +@prefix dcterms: . +@prefix nmdc: . + +nmdc:bsm-99-XYZ a nmdc:Biosample ; + dcterms:isPartOf GOLD:Gs0110115 ; + MIXS:0000012 [ a nmdc:ControlledIdentifiedTermValue ; + nmdc:has_raw_value "ENVO:00002030" ; + nmdc:term ENVO:00002030 ] ; + MIXS:0000013 [ a nmdc:ControlledIdentifiedTermValue ; + nmdc:has_raw_value "ENVO:00002169" ; + nmdc:term ENVO:00002169 ] ; + MIXS:0000014 [ a nmdc:ControlledIdentifiedTermValue ; + nmdc:has_raw_value "ENVO:00005792" ; + nmdc:term ENVO:00005792 ] ; + nmdc:name "one DNA library, like an analytical sample" . + +nmdc:bsm-99-dtTMNb a nmdc:Biosample ; + dcterms:isPartOf GOLD:Gs0110115 ; + MIXS:0000012 [ a nmdc:ControlledIdentifiedTermValue ; + nmdc:has_raw_value "ENVO:00002030" ; + nmdc:term ENVO:00002030 ] ; + MIXS:0000013 [ a nmdc:ControlledIdentifiedTermValue ; + nmdc:has_raw_value "ENVO:00002169" ; + nmdc:term ENVO:00002169 ] ; + MIXS:0000014 [ a nmdc:ControlledIdentifiedTermValue ; + nmdc:has_raw_value "ENVO:00005792" ; + nmdc:term ENVO:00005792 ] ; + nmdc:name "real biosample from the field" . + +nmdc:omprc-99-zUCd5N a nmdc:OmicsProcessing ; + dcterms:isPartOf GOLD:Gs0112340 ; + nmdc:add_date "30-OCT-14 12.00.00.000000000 AM" ; + nmdc:alternative_identifiers "gold:Gp0108335" ; + nmdc:has_input GOLD:Gb0108335 ; + nmdc:has_output RetroRules:551a20d30d878525404e90d5 ; + nmdc:mod_date "22-MAY-20 06.13.12.927000000 PM" ; + nmdc:name "a process in which a biosample was sequenced?" ; + nmdc:ncbi_project_name "Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3D" ; + nmdc:omics_type [ a nmdc:ControlledTermValue ; + nmdc:has_raw_value "Metagenome" ] ; + nmdc:processing_institution "JGI" ; + nmdc:type "nmdc:OmicsProcessing" . + +ENVO:00002030 a nmdc:OntologyClass . + +ENVO:00002169 a nmdc:OntologyClass . + +ENVO:00005792 a nmdc:OntologyClass . + +[] a nmdc:Database ; + nmdc:biosample_set nmdc:bsm-99-XYZ, + nmdc:bsm-99-dtTMNb ; + nmdc:omics_processing_set nmdc:omprc-99-zUCd5N . + diff --git a/src/data/output/Database-multiple-paths.yaml b/src/data/output/Database-multiple-paths.yaml new file mode 100644 index 0000000000..eb4dba0ec2 --- /dev/null +++ b/src/data/output/Database-multiple-paths.yaml @@ -0,0 +1,52 @@ +biosample_set: +- id: nmdc:bsm-99-dtTMNb + name: real biosample from the field + part_of: + - gold:Gs0110115 + env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 + env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 + env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 +- id: nmdc:bsm-99-XYZ + name: one DNA library, like an analytical sample + part_of: + - gold:Gs0110115 + env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 + env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 + env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 +omics_processing_set: +- id: nmdc:omprc-99-zUCd5N + name: a process in which a biosample was sequenced? + alternative_identifiers: + - gold:Gp0108335 + has_input: + - gold:Gb0108335 + add_date: 30-OCT-14 12.00.00.000000000 AM + mod_date: 22-MAY-20 06.13.12.927000000 PM + has_output: + - jgi:551a20d30d878525404e90d5 + ncbi_project_name: Thawing permafrost microbial communities from the Arctic, studying + carbon transformations - Permafrost 712P3D + omics_type: + has_raw_value: Metagenome + part_of: + - gold:Gs0112340 + processing_institution: JGI + type: nmdc:OmicsProcessing diff --git a/src/data/output/Database-nmdc-example.ttl b/src/data/output/Database-nmdc-example.ttl index 5164b6aa05..a48f252413 100644 --- a/src/data/output/Database-nmdc-example.ttl +++ b/src/data/output/Database-nmdc-example.ttl @@ -1,8 +1,8 @@ @prefix ENVO: . @prefix GOLD: . @prefix MIXS: . +@prefix RetroRules: . @prefix dcterms: . -@prefix mgnify: . @prefix nmdc: . @prefix xsd: . @@ -130,7 +130,7 @@ nmdc:omprc-99-9XUVVF a nmdc:OmicsProcessing ; nmdc:add_date "17-AUG-17 05.08.38.451000000 PM" ; nmdc:alternative_identifiers "GOLD:Gp0225767" ; nmdc:has_input GOLD:Gb0157174 ; - nmdc:has_output mgnify:599c3a117ded5e41edd7da77 ; + nmdc:has_output RetroRules:599c3a117ded5e41edd7da77 ; nmdc:mod_date "16-OCT-20 02.04.01.374000000 AM" ; nmdc:name "Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O" ; nmdc:ncbi_project_name "Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O" ; @@ -145,7 +145,7 @@ nmdc:omprc-99-MVW1FV a nmdc:OmicsProcessing ; nmdc:add_date "29-MAR-18 01.27.30.036000000 PM" ; nmdc:alternative_identifiers "GOLD:Gp0306221" ; nmdc:has_input GOLD:Gb0188037 ; - nmdc:has_output mgnify:5baa816646d1e63f764deb37 ; + nmdc:has_output RetroRules:5baa816646d1e63f764deb37 ; nmdc:mod_date "04-APR-20 08.26.35.067000000 AM" ; nmdc:name "Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG" ; nmdc:ncbi_project_name "Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG" ; @@ -160,7 +160,7 @@ nmdc:omprc-99-dk9vgI a nmdc:OmicsProcessing ; nmdc:add_date "17-MAR-17 04.55.44.822000000 PM" ; nmdc:alternative_identifiers "GOLD:Gp0208560" ; nmdc:has_input GOLD:Gb0150408 ; - nmdc:has_output mgnify:58b653757ded5e7a2af951c4 ; + nmdc:has_output RetroRules:58b653757ded5e7a2af951c4 ; nmdc:mod_date "22-MAY-20 06.38.19.576000000 PM" ; nmdc:name "Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG" ; nmdc:ncbi_project_name "Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG" ; diff --git a/src/data/output/Database-omics-processings.ttl b/src/data/output/Database-omics-processings.ttl index a7c9d991e9..b79cc90766 100644 --- a/src/data/output/Database-omics-processings.ttl +++ b/src/data/output/Database-omics-processings.ttl @@ -1,6 +1,6 @@ @prefix GOLD: . +@prefix RetroRules: . @prefix dcterms: . -@prefix mgnify: . @prefix nmdc: . nmdc:omprc-99-5kgIJR a nmdc:OmicsProcessing ; @@ -8,7 +8,7 @@ nmdc:omprc-99-5kgIJR a nmdc:OmicsProcessing ; nmdc:add_date "30-OCT-14 12.00.00.000000000 AM" ; nmdc:alternative_identifiers "gold:Gp0108341" ; nmdc:has_input GOLD:Gb0108341 ; - nmdc:has_output mgnify:551a20d90d878525404e90e1 ; + nmdc:has_output RetroRules:551a20d90d878525404e90e1 ; nmdc:mod_date "22-MAY-20 06.09.46.171000000 PM" ; nmdc:name "Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712S3S" ; nmdc:ncbi_project_name "Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712S3S" ; @@ -22,7 +22,7 @@ nmdc:omprc-99-gKlQlF a nmdc:OmicsProcessing ; nmdc:add_date "30-OCT-14 12.00.00.000000000 AM" ; nmdc:alternative_identifiers "gold:Gp0108340" ; nmdc:has_input GOLD:Gb0108340 ; - nmdc:has_output mgnify:551a20d50d878525404e90d7 ; + nmdc:has_output RetroRules:551a20d50d878525404e90d7 ; nmdc:mod_date "22-MAY-20 06.10.59.590000000 PM" ; nmdc:name "Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 612S3M" ; nmdc:ncbi_project_name "Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 612S3M" ; @@ -36,7 +36,7 @@ nmdc:omprc-99-zUCd5N a nmdc:OmicsProcessing ; nmdc:add_date "30-OCT-14 12.00.00.000000000 AM" ; nmdc:alternative_identifiers "gold:Gp0108335" ; nmdc:has_input GOLD:Gb0108335 ; - nmdc:has_output mgnify:551a20d30d878525404e90d5 ; + nmdc:has_output RetroRules:551a20d30d878525404e90d5 ; nmdc:mod_date "22-MAY-20 06.13.12.927000000 PM" ; nmdc:name "Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3D" ; nmdc:ncbi_project_name "Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3D" ; diff --git a/src/data/output/OmicsProcessing-1.ttl b/src/data/output/OmicsProcessing-1.ttl index 525ae89b4a..0d7079e02b 100644 --- a/src/data/output/OmicsProcessing-1.ttl +++ b/src/data/output/OmicsProcessing-1.ttl @@ -1,6 +1,6 @@ @prefix GOLD: . +@prefix RetroRules: . @prefix dcterms: . -@prefix mgnify: . @prefix nmdc: . nmdc:omprc-99-zUCd5N a nmdc:OmicsProcessing ; @@ -8,7 +8,7 @@ nmdc:omprc-99-zUCd5N a nmdc:OmicsProcessing ; nmdc:add_date "30-OCT-14 12.00.00.000000000 AM" ; nmdc:alternative_identifiers "gold:Gp0108335" ; nmdc:has_input GOLD:Gb0108335 ; - nmdc:has_output mgnify:551a20d30d878525404e90d5 ; + nmdc:has_output RetroRules:551a20d30d878525404e90d5 ; nmdc:mod_date "22-MAY-20 06.13.12.927000000 PM" ; nmdc:name "Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3D" ; nmdc:ncbi_project_name "Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3D" ; diff --git a/src/data/output/README.md b/src/data/output/README.md index 4bcc8e5084..267a6a9284 100644 --- a/src/data/output/README.md +++ b/src/data/output/README.md @@ -1,210 +1,261 @@ -## Biosample-embargoed +## Database-mags-activities ### Input ```yaml -embargoed: true -env_broad_scale: - has_raw_value: ENVO:00002030 - term: - id: ENVO:00002030 -env_local_scale: - has_raw_value: ENVO:00002169 - term: - id: ENVO:00002169 -env_medium: - has_raw_value: ENVO:00005792 - term: - id: ENVO:00005792 -id: nmdc:bsm-99-dtTMNb -part_of: -- gold:Gs0110115 +mags_activity_set: +- binned_contig_num: 489 + ended_at_time: '2021-01-10T00:00:00+00:00' + execution_resource: NERSC - Cori + git_url: https://img.jgi.doe.gov + has_input: + - nmdc:0a3d00715d01ad7b8f3aee59b674dfe9 + - nmdc:668d207be5ea844f988fbfb2813564cc + - nmdc:b7e9c8d0bffdd13ace6f862a61fa87d2 + has_output: + - nmdc:818f5a47d1371295f9313909ea12eb50 + - nmdc:e0b7421514f976cb7ad8c343cf3077a9 + - nmdc:a755bb87aded36aefbd8022506a793c7 + - nmdc:1346fe25b6ff22180eb3a51204e0b1fc + id: nmdc:wfmag-99-5MiDJM + input_contig_num: 169782 + low_depth_contig_num: 0 + mags_list: + - bin_name: bins.1 + bin_quality: LQ + completeness: 11.42 + contamination: 0.21 + gene_count: 250 + num_16s: 0 + num_23s: 0 + num_5s: 1 + num_t_rna: 1 + number_of_contig: 52 + - bin_name: bins.2 + bin_quality: LQ + completeness: 51.25 + contamination: 10.34 + gene_count: 2548 + num_16s: 0 + num_23s: 0 + num_5s: 1 + num_t_rna: 26 + number_of_contig: 426 + - bin_name: bins.3 + bin_quality: LQ + completeness: 2 + contamination: 0 + gene_count: 294 + num_16s: 0 + num_23s: 0 + num_5s: 0 + num_t_rna: 1 + number_of_contig: 11 + name: MAGs activiity 1781_86101 + started_at_time: '2021-01-10T00:00:00+00:00' + too_short_contig_num: 159810 + type: nmdc:MAGsAnalysisActivity + unbinned_contig_num: 9483 + was_informed_by: gold:Gp0115663 +- binned_contig_num: 206 + ended_at_time: '2021-01-10T00:00:00+00:00' + execution_resource: NERSC - Cori + git_url: https://img.jgi.doe.gov + has_input: + - nmdc:b78f599c21fb31b00d3f8a3c56daeb88 + - nmdc:662dc676b0b5a486248357f5b887c18b + - nmdc:bc034c7024043ea88b44d0897bb5bece + has_output: + - nmdc:c24915651cfdfc91f3e6b5bac679c3af + - nmdc:e8ec230bfe68a272b34540e7f5ab5b2b + - nmdc:474fa29bd39452fa80f5a32e9e6be6f4 + - nmdc:9800add41d26829494265ba81a100c53 + id: nmdc:wfmag-99-VOgM5i + input_contig_num: 78376 + low_depth_contig_num: 0 + mags_list: + - bin_name: bins.1 + bin_quality: LQ + completeness: 25.86 + contamination: 0 + gene_count: 401 + num_16s: 0 + num_23s: 0 + num_5s: 0 + num_t_rna: 4 + number_of_contig: 74 + - bin_name: bins.2 + bin_quality: LQ + completeness: 0 + contamination: 0 + gene_count: 383 + num_16s: 0 + num_23s: 0 + num_5s: 0 + num_t_rna: 5 + number_of_contig: 74 + - bin_name: bins.3 + bin_quality: LQ + completeness: 17.61 + contamination: 0 + gene_count: 313 + num_16s: 0 + num_23s: 0 + num_5s: 0 + num_t_rna: 7 + number_of_contig: 58 + name: MAGs activiity 1781_86089 + started_at_time: '2021-01-10T00:00:00+00:00' + too_short_contig_num: 75364 + type: nmdc:MAGsAnalysisActivity + unbinned_contig_num: 2806 + was_informed_by: gold:Gp0115664 ``` -## Database-biosamples-1 +## Database-metagenome-assembly ### Input ```yaml -biosample_set: -- add_date: 28-JUL-14 12.00.00.000000000 AM - community: microbial communities - description: Bulk Aqueous phase filtered water - ecosystem: Environmental - ecosystem_category: Aquatic - ecosystem_subtype: Groundwater - ecosystem_type: Freshwater - env_broad_scale: - has_raw_value: ENVO:00002030 - term: - id: ENVO:00002030 - env_local_scale: - has_raw_value: ENVO:00002169 - term: - id: ENVO:00002169 - env_medium: - has_raw_value: ENVO:00005792 - term: - id: ENVO:00005792 - geo_loc_name: - has_raw_value: Lithgow - gold_biosample_identifiers: - - GOLD:Gb0101224 - habitat: Coalbed water - id: nmdc:bsm-99-dtTMNb - lat_lon: - has_raw_value: -33.460524 150.168149 - location: from the Lithgow State Coal Mine, New South Wales, Australia - mod_date: 26-AUG-16 01.50.27.000000000 PM - name: Lithgow State Coal Mine Calcium nutrients (early) - ncbi_taxonomy_name: coal metagenome - part_of: - - gold:Gs0110115 - samp_taxon_id: - has_raw_value: coal metagenome [NCBITaxon:1260732] - sample_collection_site: Lithgow State Coal Mine - specific_ecosystem: Coalbed water - type: nmdc:Biosample -- add_date: 28-JUL-14 12.00.00.000000000 AM - biosample_categories: - - LTER - - SIP - community: microbial communities - description: Bulk Aqueous phase filtered water - ecosystem: Environmental - ecosystem_category: Aquatic - ecosystem_subtype: Groundwater - ecosystem_type: Freshwater - env_broad_scale: - has_raw_value: ENVO:00002030 - term: - id: ENVO:00002030 - env_local_scale: - has_raw_value: ENVO:00002169 - term: - id: ENVO:00002169 - env_medium: - has_raw_value: ENVO:00005792 - term: - id: ENVO:00005792 - geo_loc_name: - has_raw_value: Lithgow - gold_biosample_identifiers: - - GOLD:Gb0101224 - habitat: Coalbed water - id: nmdc:bsm-99-AtTUOs - lat_lon: - has_raw_value: -33.460524 150.168149 - location: from the Lithgow State Coal Mine, New South Wales, Australia - mod_date: 26-AUG-16 01.50.27.000000000 PM - name: Lithgow State Coal Mine Calcium nutrients (early) - ncbi_taxonomy_name: coal metagenome - part_of: - - gold:Gs0110115 - samp_taxon_id: - has_raw_value: coal metagenome [NCBITaxon:1260732] - sample_collection_site: Lithgow State Coal Mine - specific_ecosystem: Coalbed water - type: nmdc:Biosample -- add_date: 28-JUL-14 12.00.00.000000000 AM - community: microbial communities - description: Bulk Aqueous phase filtered water - ecosystem: Environmental - ecosystem_category: Aquatic - ecosystem_subtype: Groundwater - ecosystem_type: Freshwater - env_broad_scale: - has_raw_value: ENVO:00002030 - term: - id: ENVO:00002030 - env_local_scale: - has_raw_value: ENVO:00002169 - term: - id: ENVO:00002169 - env_medium: - has_raw_value: ENVO:00005792 - term: - id: ENVO:00005792 - geo_loc_name: - has_raw_value: Lithgow - gold_biosample_identifiers: - - GOLD:Gb0101225 - habitat: Coalbed water - id: nmdc:bsm-99-eBVHjN - lat_lon: - has_raw_value: -33.460524 150.168149 - location: from the Lithgow State Coal Mine, New South Wales, Australia - mod_date: 26-AUG-16 01.50.27.000000000 PM - name: Lithgow State Coal Mine Calcium nutrients Extra - ncbi_taxonomy_name: coal metagenome - part_of: - - gold:Gs0110115 - samp_taxon_id: - has_raw_value: coal metagenome [NCBITaxon:1260732] - sample_collection_site: Lithgow State Coal Mine - specific_ecosystem: Coalbed water - type: nmdc:Biosample -- add_date: 28-JUL-14 12.00.00.000000000 AM - community: microbial communities - description: Bulk Aqueous phase filtered water - ecosystem: Environmental - ecosystem_category: Aquatic - ecosystem_subtype: Groundwater - ecosystem_type: Freshwater - env_broad_scale: - has_raw_value: ENVO:00002030 - term: - id: ENVO:00002030 - env_local_scale: - has_raw_value: ENVO:00002169 - term: - id: ENVO:00002169 - env_medium: - has_raw_value: ENVO:00005792 - term: - id: ENVO:00005792 - geo_loc_name: - has_raw_value: Lithgow - gold_biosample_identifiers: - - GOLD:Gb0101226 - habitat: Coalbed water - id: nmdc:bsm-99-TDPHTh - lat_lon: - has_raw_value: -33.460524 150.168149 - location: from the Lithgow State Coal Mine, New South Wales, Australia - mod_date: 26-AUG-16 01.50.27.000000000 PM - name: Lithgow State Coal Mine Calcium nutrients - ncbi_taxonomy_name: coal metagenome - part_of: - - gold:Gs0110115 - samp_taxon_id: - has_raw_value: coal metagenome [NCBITaxon:1260732] - sample_collection_site: Lithgow State Coal Mine - specific_ecosystem: Coalbed water - type: nmdc:Biosample - -``` -## FunctionalAnnotation-exhaustive -### Input -```yaml -has_function: KEGG_PATHWAY:abc12345 -subject: nmdc:gene_product_1 -was_generated_by: nmdc:activity_1 - -``` -## DataObject-2 -### Input -```yaml -description: Assembled scaffold fasta for gold:Gp0061273 -file_size_bytes: 205297945 -id: nmdc:dobj-99-PqBJvW -name: assembly_scaffolds.fna -type: nmdc:DataObject +metagenome_assembly_set: +- asm_score: 3.29 + contig_bp: 192123121 + contigs: 429340 + ctg_l50: 433 + ctg_l90: 288 + ctg_logsum: 303893 + ctg_max: 17245 + ctg_n50: 132307 + ctg_n90: 357156 + ctg_powsum: 32467 + ended_at_time: '2020-03-25T00:00:00+00:00' + execution_resource: LANL B-div + gap_pct: 0 + gc_avg: 0.55402 + gc_std: 0.09822 + git_url: https://github.com/microbiomedata/metaAssembly/releases/tag/1.0.0 + has_input: + - nmdc:bd723452a107e973fcc6734ff7894bb9 + has_output: + - nmdc:8ecc9e4fe4c74d7a58b02fd8954555b9 + - nmdc:3f85e34d2c32b65e33e4abd2431dfbe8 + - nmdc:3c892f96e847b0b524d5d4e50611b5fd + - nmdc:8e504039a96e9ab885eef69155127754 + - nmdc:cf15f0ee330bfda8f666a43222b23f8a + id: nmdc:wfmgas-99-B7Vogx + name: Metagenome assembly 1472_51277 + num_aligned_reads: 63046103 + num_input_reads: 87803950 + scaf_bp: 192123121 + scaf_l50: 433 + scaf_l90: 288 + scaf_l_gt50k: 0 + scaf_logsum: 303893 + scaf_max: 17245 + scaf_n50: 132307 + scaf_n90: 357156 + scaf_n_gt50k: 0 + scaf_pct_gt50k: 0 + scaf_powsum: 32467 + scaffolds: 429340 + started_at_time: '2020-03-24T00:00:00+00:00' + type: nmdc:MetagenomeAssembly + was_informed_by: gold:Gp0061273 +- asm_score: 3.196 + contig_bp: 333164102 + contigs: 747801 + ctg_l50: 432 + ctg_l90: 289 + ctg_logsum: 483596 + ctg_max: 15780 + ctg_n50: 235059 + ctg_n90: 623912 + ctg_powsum: 51427 + ended_at_time: '2020-03-25T00:00:00+00:00' + execution_resource: LANL B-div + gap_pct: 0 + gc_avg: 0.57087 + gc_std: 0.09613 + git_url: https://github.com/microbiomedata/metaAssembly/releases/tag/1.0.0 + has_input: + - nmdc:b7e3ca7843cc0cf9a4944a9a9d3e2a66 + has_output: + - nmdc:df1fa16afe70385923b5d36cfe9513f4 + - nmdc:c4358d917f029c6fd0f8a81f4e0f1119 + - nmdc:d3bfc0e4a96431a4c07f46ad150b6edd + - nmdc:76655ec7b8a1e70a3cdf05bcd91ed9ed + - nmdc:8cebf127e41e82bd908676051acf154b + id: nmdc:wfmgas-99-CvgXTq + name: Metagenome assembly 1472_51278 + num_aligned_reads: 95369019 + num_input_reads: 141175680 + scaf_bp: 333164102 + scaf_l50: 432 + scaf_l90: 289 + scaf_l_gt50k: 0 + scaf_logsum: 483596 + scaf_max: 15780 + scaf_n50: 235059 + scaf_n90: 623912 + scaf_n_gt50k: 0 + scaf_pct_gt50k: 0 + scaf_powsum: 51427 + scaffolds: 747801 + started_at_time: '2020-03-25T00:00:00+00:00' + type: nmdc:MetagenomeAssembly + was_informed_by: gold:Gp0061274 +- asm_score: 3.527 + contig_bp: 279001661 + contigs: 607951 + ctg_l50: 449 + ctg_l90: 290 + ctg_logsum: 475574 + ctg_max: 26906 + ctg_n50: 183452 + ctg_n90: 505179 + ctg_powsum: 50819 + ended_at_time: '2020-03-25T00:00:00+00:00' + execution_resource: LANL B-div + gap_pct: 0 + gc_avg: 0.55832 + gc_std: 0.09898 + git_url: https://github.com/microbiomedata/metaAssembly/releases/tag/1.0.0 + has_input: + - nmdc:918109eabfaabfa7b7e948154c013e8a + has_output: + - nmdc:72f3b35ad52c9f2f17c39054ae05d8c7 + - nmdc:97deb14198281d7ff3e1a6d4ff7ab223 + - nmdc:2f4e213f4334bc304ff9d2f02c60e4a8 + - nmdc:66ac3134506a741f4e05b85a8b62e330 + - nmdc:1a84af1136a19bdd716320bdd0e47c67 + id: nmdc:wfmgas-99-L9Z34K + name: Metagenome assembly 1472_51279 + num_aligned_reads: 79146088 + num_input_reads: 116129794 + scaf_bp: 279001661 + scaf_l50: 449 + scaf_l90: 290 + scaf_l_gt50k: 0 + scaf_logsum: 475574 + scaf_max: 26906 + scaf_n50: 183452 + scaf_n90: 505179 + scaf_n_gt50k: 0 + scaf_pct_gt50k: 0 + scaf_powsum: 50819 + scaffolds: 607951 + started_at_time: '2020-03-25T00:00:00+00:00' + type: nmdc:MetagenomeAssembly + was_informed_by: gold:Gp0061275 ``` -## Database-biosamples-sites +## Database-nmdc-example ### Input ```yaml biosample_set: -- collected_from: nmdc:frsite-99-SPreao - description: Root microbial communities from poplar common garden site in Clatskanie, - Oregon, USA +- add_date: 17-MAR-17 04.55.54.717000000 PM + community: microbial communities + description: Permafrost microbial communities from Stordalen Mire, Sweden + ecosystem: Environmental + ecosystem_category: Terrestrial + ecosystem_subtype: Wetlands + ecosystem_type: Soil env_broad_scale: has_raw_value: ENVO:00002030 term: @@ -217,16 +268,33 @@ biosample_set: has_raw_value: ENVO:00005792 term: id: ENVO:00005792 + geo_loc_name: + has_raw_value: 'Sweden: Stordalen' gold_biosample_identifiers: - - GOLD:Gb0305833 - id: nmdc:bsm-99-J9FcnC - name: Root microbial communities from poplar common garden site in Clatskanie, Oregon, - USA - BESC-13-CL1_35_33 endosphere + - GOLD:Gb0150408 + habitat: Fen + id: nmdc:bsm-99-isqhuW + lat_lon: + has_raw_value: 68.35 19.05 + location: Stordalen Mire, Sweden + mod_date: 08-JAN-20 02.49.23.000000000 PM + name: Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG + ncbi_taxonomy_name: permafrost metagenome part_of: - - nmdc:sty-99-U21mUX -- collected_from: nmdc:frsite-99-SPreao - description: Rhizosphere soil microbial communities from poplar common garden site - in Clatskanie, Oregon, USA + - GOLD:Gs0128849 + samp_name: 11E1M metaG + sample_collection_site: Mire fen + specific_ecosystem: Permafrost + type: nmdc:Biosample +- add_date: 17-AUG-17 05.38.34.719000000 PM + community: microbial communities + description: Forest soil from Barre Woods Harvard Forest LTER site was incubated + at 10C with heavy water. Sample is from a control plot at ambient soil temperature, + organic horizon - top 4cm of soil + ecosystem: Environmental + ecosystem_category: Terrestrial + ecosystem_subtype: Unclassified + ecosystem_type: Soil env_broad_scale: has_raw_value: ENVO:00002030 term: @@ -239,16 +307,34 @@ biosample_set: has_raw_value: ENVO:00005792 term: id: ENVO:00005792 + geo_loc_name: + has_raw_value: 'USA: Massachusetts' gold_biosample_identifiers: - - GOLD:Gb0291692 - id: nmdc:bsm-99-BdlWdQ - name: Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, - Oregon, USA - BESC-13-CL1_35_33 + - GOLD:Gb0157174 + habitat: soil + id: nmdc:bsm-99-dge3H9 + lat_lon: + has_raw_value: 42.481016 -72.178343 + location: Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United + States + mod_date: 08-JAN-20 02.49.23.000000000 PM + name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, + Petersham, Massachusetts, United States - Inc-BW-C-14-O + ncbi_taxonomy_name: soil metagenome part_of: - - nmdc:sty-99-U21mUX -- collected_from: nmdc:frsite-99-SPreao - description: Bulk soil microbial communities from poplar common garden site in Clatskanie, - Oregon, USA + - GOLD:Gs0128849 + samp_name: Inc-BW-C-14-O + sample_collection_site: forest soil + specific_ecosystem: Forest Soil + type: nmdc:Biosample +- add_date: 29-MAR-18 01.27.40.709000000 PM + community: microbial communities + description: Rhizosphere microbial communities from Carex aquatilis grown in submerged + peat from a thermokarst bog, University of Washington, Seatle, WA, United States + ecosystem: Host-associated + ecosystem_category: Plants + ecosystem_subtype: Soil + ecosystem_type: Rhizosphere env_broad_scale: has_raw_value: ENVO:00002030 term: @@ -261,247 +347,229 @@ biosample_set: has_raw_value: ENVO:00005792 term: id: ENVO:00005792 + geo_loc_name: + has_raw_value: 'USA: Seattle, Washington' gold_biosample_identifiers: - - GOLD:Gb0291582 - id: nmdc:bsm-99-vn74Wq - name: Bulk soil microbial communities from poplar common garden site in Clatskanie, - Oregon, USA - BESC-13-CL1_35_33 - part_of: - - nmdc:sty-99-U21mUX -- collected_from: nmdc:frsite-99-h2mYFG - description: Root microbial communities from poplar common garden site in Clatskanie, - Oregon, USA - env_broad_scale: - has_raw_value: ENVO:00002030 - term: - id: ENVO:00002030 - env_local_scale: - has_raw_value: ENVO:00002169 - term: - id: ENVO:00002169 - env_medium: - has_raw_value: ENVO:00005792 - term: - id: ENVO:00005792 - gold_biosample_identifiers: - - GOLD:Gb0305834 - id: nmdc:bsm-99-P8FdpS - name: Root microbial communities from poplar common garden site in Clatskanie, Oregon, - USA - BESC-13-CL2_39_29 endosphere - part_of: - - nmdc:sty-99-U21mUX -- collected_from: nmdc:frsite-99-h2mYFG - description: Rhizosphere soil microbial communities from poplar common garden site - in Clatskanie, Oregon, USA - env_broad_scale: - has_raw_value: ENVO:00002030 - term: - id: ENVO:00002030 - env_local_scale: - has_raw_value: ENVO:00002169 - term: - id: ENVO:00002169 - env_medium: - has_raw_value: ENVO:00005792 - term: - id: ENVO:00005792 - gold_biosample_identifiers: - - GOLD:Gb0291693 - id: nmdc:bsm-99-ugBwz3 - name: Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, - Oregon, USA - BESC-13-CL2_39_29 - part_of: - - nmdc:sty-99-U21mUX -- collected_from: nmdc:frsite-99-h2mYFG - description: Bulk soil microbial communities from poplar common garden site in Clatskanie, - Oregon, USA - env_broad_scale: - has_raw_value: ENVO:00002030 - term: - id: ENVO:00002030 - env_local_scale: - has_raw_value: ENVO:00002169 - term: - id: ENVO:00002169 - env_medium: - has_raw_value: ENVO:00005792 - term: - id: ENVO:00005792 - gold_biosample_identifiers: - - GOLD:Gb0291583 - id: nmdc:bsm-99-tN5lxM - name: Bulk soil microbial communities from poplar common garden site in Clatskanie, - Oregon, USA - BESC-13-CL2_39_29 + - GOLD:Gb0188037 + habitat: rhizosphere + host_name: Carex aquatilis + id: nmdc:bsm-99-dc6tg6 + lat_lon: + has_raw_value: 47.6516 -122.3045 + location: University of Washington, Seatle, WA, United States + mod_date: 08-JAN-20 02.49.25.000000000 PM + name: Rhizosphere microbial communities from Carex aquatilis grown in University + of Washington, Seatle, WA, United States - 4-1-23 metaG + ncbi_taxonomy_name: rhizosphere metagenome part_of: - - nmdc:sty-99-U21mUX -collecting_biosamples_from_site_set: -- has_inputs: - - nmdc:frsite-99-SPreao - has_outputs: - - nmdc:bsm-99-J9FcnC - - nmdc:bsm-99-BdlWdQ - - nmdc:bsm-99-vn74Wq - id: nmdc:clsite-99-Cq00d1 - name: Collection of biosamples from BESC-13-CL1_35_33 -- has_inputs: - - nmdc:frsite-99-h2mYFG - has_outputs: - - nmdc:bsm-99-P8FdpS - - nmdc:bsm-99-ugBwz3 - - nmdc:bsm-99-tN5lxM - id: nmdc:clsite-99-yzmLBN - name: Collection of biosamples from BESC-13-CL2_39_29 -field_research_site_set: -- description: Bioscales tree BESC-13-CL1_35_33 - id: nmdc:frsite-99-SPreao - name: BESC-13-CL1_35_33 -- description: Bioscales tree BESC-13-CL2_39_29 - id: nmdc:frsite-99-h2mYFG - name: BESC-13-CL2_39_29 - -``` -## FunctionalAnnotation-minimal -### Input -```yaml -has_function: KEGG_PATHWAY:abc12345 - -``` -## Database-omics-processings -### Input -```yaml + - GOLD:Gs0128849 + samp_name: 4-1-23 metaG + sample_collection_site: Peat Soil + specific_ecosystem: Unclassified + type: nmdc:Biosample +data_object_set: +- description: Raw sequencer read data + file_size_bytes: 9208349052 + id: nmdc:dobj-99-dkJ8xX + name: 11340.8.202049.GTCTCCT-AAGGAGA.fastq.gz + type: nmdc:DataObject +- description: Raw sequencer read data + file_size_bytes: 34243309819 + id: nmdc:dobj-99-7zrm55 + name: 11839.4.222578.GAGCTCA-TTGAGCT.fastq.gz + type: nmdc:DataObject +- description: Raw sequencer read data + file_size_bytes: 7580035314 + id: nmdc:dobj-99-sQQw0I + name: 12660.4.274923.GATCGTAC-GTACGATC.fastq.gz + type: nmdc:DataObject omics_processing_set: -- add_date: 30-OCT-14 12.00.00.000000000 AM +- add_date: 17-AUG-17 05.08.38.451000000 PM alternative_identifiers: - - gold:Gp0108335 + - GOLD:Gp0225767 + description: Forest soil from Barre Woods Harvard Forest LTER site was incubated + at 10C with heavy water. Sample is from a control plot at ambient soil temperature, + organic horizon - top 4cm of soil has_input: - - gold:Gb0108335 + - GOLD:Gb0157174 has_output: - - jgi:551a20d30d878525404e90d5 - id: nmdc:omprc-99-zUCd5N - mod_date: 22-MAY-20 06.13.12.927000000 PM - name: Thawing permafrost microbial communities from the Arctic, studying carbon - transformations - Permafrost 712P3D - ncbi_project_name: Thawing permafrost microbial communities from the Arctic, studying - carbon transformations - Permafrost 712P3D + - jgi:599c3a117ded5e41edd7da77 + id: nmdc:omprc-99-9XUVVF + mod_date: 16-OCT-20 02.04.01.374000000 AM + name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, + Petersham, Massachusetts, United States - Inc-BW-C-14-O + ncbi_project_name: Forest soil microbial communities from Barre Woods Harvard Forest + LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O omics_type: has_raw_value: Metagenome part_of: - - gold:Gs0112340 + - GOLD:Gs0130354 processing_institution: JGI type: nmdc:OmicsProcessing -- add_date: 30-OCT-14 12.00.00.000000000 AM +- add_date: 17-MAR-17 04.55.44.822000000 PM alternative_identifiers: - - gold:Gp0108340 + - GOLD:Gp0208560 + description: Permafrost microbial communities from Stordalen Mire, Sweden has_input: - - gold:Gb0108340 + - GOLD:Gb0150408 has_output: - - jgi:551a20d50d878525404e90d7 - id: nmdc:omprc-99-gKlQlF - mod_date: 22-MAY-20 06.10.59.590000000 PM - name: Thawing permafrost microbial communities from the Arctic, studying carbon - transformations - Permafrost 612S3M - ncbi_project_name: Thawing permafrost microbial communities from the Arctic, studying - carbon transformations - Permafrost 612S3M + - jgi:58b653757ded5e7a2af951c4 + id: nmdc:omprc-99-dk9vgI + mod_date: 22-MAY-20 06.38.19.576000000 PM + name: Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG + ncbi_project_name: Permafrost microbial communities from Stordalen Mire, Sweden + - 611E1M metaG omics_type: has_raw_value: Metagenome part_of: - - gold:Gs0112340 + - GOLD:Gs0128849 processing_institution: JGI type: nmdc:OmicsProcessing -- add_date: 30-OCT-14 12.00.00.000000000 AM +- add_date: 29-MAR-18 01.27.30.036000000 PM alternative_identifiers: - - gold:Gp0108341 + - GOLD:Gp0306221 + description: Rhizosphere microbial communities from Carex aquatilis grown in submerged + peat from a thermokarst bog, University of Washington, Seatle, WA, United States has_input: - - gold:Gb0108341 + - GOLD:Gb0188037 has_output: - - jgi:551a20d90d878525404e90e1 - id: nmdc:omprc-99-5kgIJR - mod_date: 22-MAY-20 06.09.46.171000000 PM - name: Thawing permafrost microbial communities from the Arctic, studying carbon - transformations - Permafrost 712S3S - ncbi_project_name: Thawing permafrost microbial communities from the Arctic, studying - carbon transformations - Permafrost 712S3S + - jgi:5baa816646d1e63f764deb37 + id: nmdc:omprc-99-MVW1FV + mod_date: 04-APR-20 08.26.35.067000000 AM + name: Rhizosphere microbial communities from Carex aquatilis grown in University + of Washington, Seatle, WA, United States - 4-1-23 metaG + ncbi_project_name: Rhizosphere microbial communities from Carex aquatilis grown + in University of Washington, Seatle, WA, United States - 4-1-23 metaG omics_type: has_raw_value: Metagenome part_of: - - gold:Gs0112340 + - GOLD:Gs0134277 processing_institution: JGI type: nmdc:OmicsProcessing +study_set: +- description: Thawing permafrost is one of the largest soil carbon pools on the planet. + The goal of this project is to study microbial communities that participate in + the soil carbon cycle. + doi: + has_raw_value: 10.25585/1488217 + ecosystem: Environmental + ecosystem_category: Terrestrial + ecosystem_subtype: Wetlands + ecosystem_type: Soil + gold_study_identifiers: + - GOLD:Gs0128849 + id: nmdc:sty-99-FkQIsc + name: Permafrost microbial communities from Stordalen Mire, Sweden + principal_investigator: + has_raw_value: Virginia Rich + specific_ecosystem: Permafrost + type: nmdc:Study +- description: The goal of this study is to learn the molecular mechanisms underlying + changes in the temperature sensitive respiration response of forest soils to long-term + experimental warming + doi: + has_raw_value: 10.25585/1488215 + ecosystem: Environmental + ecosystem_category: Terrestrial + ecosystem_subtype: Unclassified + ecosystem_type: Soil + gold_study_identifiers: + - GOLD:Gs0130354 + id: nmdc:sty-99-oJmAOs + name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, + Petersham, Massachusetts, United States + principal_investigator: + has_raw_value: Jeffrey Blanchard + specific_ecosystem: Forest Soil + type: nmdc:Study +- description: The goal of this study is to advance understanding of the response + of methane production and methane oxidation to changes in plant productivity so + that modeled representations of these processes and interactions can be improved. + doi: + has_raw_value: 10.25585/1488209 + ecosystem: Host-associated + ecosystem_category: Plants + ecosystem_subtype: Rhizosphere + ecosystem_type: Roots + gold_study_identifiers: + - GOLD:Gs0134277 + id: nmdc:sty-99-3bQQ4j + name: Rhizosphere microbial communities from Carex aquatilis grown in University + of Washington, Seatle, WA, United States + principal_investigator: + has_raw_value: Rebecca Neumann + specific_ecosystem: Soil + type: nmdc:Study ``` -## DataObject-1 -### Input -```yaml -description: Metagenome Contig Coverage Stats for gold:Gp0061273 -file_size_bytes: 32787380 -id: nmdc:dobj-99-izwYW6 -name: mapping_stats.txt -type: nmdc:DataObject - -``` -## Database-with-MetagenomeSequencingActivity -### Input -```yaml -metagenome_sequencing_activity_set: -- ended_at_time: '2021-09-15T10:13:20+00:00' - execution_resource: JGI - git_url: '' - has_input: - - nmdc:unvalidated_placeholder - has_output: - - nmdc:22afa3d49b73eaec2e9787a6b88fbdc3 - id: nmdc:wfmsa-99-qwertyuiop - name: Sequencing Activity for nmdc:mga0vx38 - part_of: - - nmdc:mga0vx38 - started_at_time: '2021-08-05T14:48:51+00:00' - type: nmdc:MetagenomeSequencing - version: v1.0.0 - was_informed_by: gold:Gp0213371 - -``` -## Database-MetabolomicsAnalysisActivity-1 -### Input -```yaml -metabolomics_analysis_activity_set: -- ended_at_time: '2021-09-15T10:13:20+00:00' - execution_resource: NERSC cori - git_url: https://example.org/WorkflowExecutionActivity - has_calibration: calibration with 0.01% phosphoric acid - has_input: - - nmdc:i1 - - nmdc:i2 - has_output: - - nmdc:o1 - - nmdc:o2 - id: nmdc:wfmb-99-ABCDEF - name: Metabolomics Analysis Activity for nmdc:wfmb-99-ABCDEF - started_at_time: '2021-08-05T14:48:51+00:00' - type: WorkflowExecutionActivity - was_informed_by: nmdc:a1 - -``` -## DataObject-exhaustive +## Database-sample-prep ### Input ```yaml -alternative_identifiers: -- prefix:value1 -- prefix:value2 -compression_type: any string -data_object_type: Crispr Terms -description: Crispr Terms for nmdc:ann0vx38 -file_size_bytes: 1234 -id: nmdc:dobj-11-dtTMNb -md5_checksum: 22afa3d49b73eaec2e9787a6b88fbdc3 -name: Crispr Terms -type: nmdc:DataObject -url: http://example.com -was_generated_by: nmdc:invalid_id +dissolving_activity_set: +- dissolution_aided_by: + activity_speed: + has_numeric_value: 800 + has_unit: RPM + activity_time: + has_numeric_value: 2 + has_unit: hours + device_type: orbital_shaker + dissolution_reagent: deionized_water + dissolution_volume: + has_numeric_value: 30 + has_unit: mL + dissolved_in: + container_size: + has_numeric_value: 50 + has_unit: mL + container_type: screw_top_conical + material_input: nmdc:matsm-b1fb4ff1-e59b-4e2b-a8f9-b95ea6ba4135 + material_output: nmdc:matsm-181a7a0a-4b04-4a22-9b89-db53e2ccdc99 +material_sample_set: +- description: a soil biosample + id: nmdc:matsm-99-PVhTGD + name: monet_data:soil_1 +- description: a 6 gram aliquot of monet_data:soil_1 + id: nmdc:matsm-99-m7PfV8 + name: nmdc:matsm-b1fb4ff1-e59b-4e2b-a8f9-b95ea6ba4135 +- description: monet_data:somextract_6 dissolved in 30 mL of water + id: nmdc:matsm-99-j670OL + name: monet_data:somextract_7 +- description: something at the beginning of a reaction + id: nmdc:matsm-99-KyiIwv + name: monet_data:derive_4 +- description: something at the end of a reaction + id: nmdc:matsm-99-KaZog6 + name: monet_data:derive_5 +material_sampling_activity_set: +- amount_collected: + has_numeric_value: 6 + has_unit: grams + biosample_input: nmdc:matsm-bfc5b458-1c62-44e7-886a-dd3a2cc7ad67 + collected_into: + container_size: + has_numeric_value: 50 + has_unit: mL + container_type: screw_top_conical + material_output: nmdc:matsm-b1fb4ff1-e59b-4e2b-a8f9-b95ea6ba4135 + sampling_method: weighing +reaction_activity_set: +- material_input: nmdc:matsm-31380f3c-cea3-4f68-a8c6-cd84efa5e622 + material_output: nmdc:matsm-9fe9277b-454a-4257-a825-3b4725df665e + reaction_aided_by: + activity_temperature: + has_numeric_value: 37 + has_unit: degrees Celsius + activity_time: + has_numeric_value: 1.5 + has_unit: hours + device_type: thermomixer ``` -## Biosample-minimal-2 +## Biosample-embargoed ### Input ```yaml +embargoed: true env_broad_scale: has_raw_value: ENVO:00002030 term: @@ -519,163 +587,31 @@ part_of: - gold:Gs0110115 ``` -## Biosample-with-fire +## OmicsProcessing-1 ### Input ```yaml -env_broad_scale: - has_raw_value: ENVO:00002030 - term: - id: ENVO:00002030 -env_local_scale: - has_raw_value: ENVO:00002169 - term: - id: ENVO:00002169 -env_medium: - has_raw_value: ENVO:00005792 - term: - id: ENVO:00005792 -fire: 1871-10-01 to 1871-10-31 -id: nmdc:bsm-99-dtTMNb +add_date: 30-OCT-14 12.00.00.000000000 AM +alternative_identifiers: +- gold:Gp0108335 +has_input: +- gold:Gb0108335 +has_output: +- jgi:551a20d30d878525404e90d5 +id: nmdc:omprc-99-zUCd5N +mod_date: 22-MAY-20 06.13.12.927000000 PM +name: Thawing permafrost microbial communities from the Arctic, studying carbon transformations + - Permafrost 712P3D +ncbi_project_name: Thawing permafrost microbial communities from the Arctic, studying + carbon transformations - Permafrost 712P3D +omics_type: + has_raw_value: Metagenome part_of: -- gold:Gs0110115 +- gold:Gs0112340 +processing_institution: JGI +type: nmdc:OmicsProcessing ``` -## Database-metagenome-assembly -### Input -```yaml -metagenome_assembly_set: -- asm_score: 3.29 - contig_bp: 192123121 - contigs: 429340 - ctg_l50: 433 - ctg_l90: 288 - ctg_logsum: 303893 - ctg_max: 17245 - ctg_n50: 132307 - ctg_n90: 357156 - ctg_powsum: 32467 - ended_at_time: '2020-03-25T00:00:00+00:00' - execution_resource: LANL B-div - gap_pct: 0 - gc_avg: 0.55402 - gc_std: 0.09822 - git_url: https://github.com/microbiomedata/metaAssembly/releases/tag/1.0.0 - has_input: - - nmdc:bd723452a107e973fcc6734ff7894bb9 - has_output: - - nmdc:8ecc9e4fe4c74d7a58b02fd8954555b9 - - nmdc:3f85e34d2c32b65e33e4abd2431dfbe8 - - nmdc:3c892f96e847b0b524d5d4e50611b5fd - - nmdc:8e504039a96e9ab885eef69155127754 - - nmdc:cf15f0ee330bfda8f666a43222b23f8a - id: nmdc:wfmgas-99-B7Vogx - name: Metagenome assembly 1472_51277 - num_aligned_reads: 63046103 - num_input_reads: 87803950 - scaf_bp: 192123121 - scaf_l50: 433 - scaf_l90: 288 - scaf_l_gt50k: 0 - scaf_logsum: 303893 - scaf_max: 17245 - scaf_n50: 132307 - scaf_n90: 357156 - scaf_n_gt50k: 0 - scaf_pct_gt50k: 0 - scaf_powsum: 32467 - scaffolds: 429340 - started_at_time: '2020-03-24T00:00:00+00:00' - type: nmdc:MetagenomeAssembly - was_informed_by: gold:Gp0061273 -- asm_score: 3.196 - contig_bp: 333164102 - contigs: 747801 - ctg_l50: 432 - ctg_l90: 289 - ctg_logsum: 483596 - ctg_max: 15780 - ctg_n50: 235059 - ctg_n90: 623912 - ctg_powsum: 51427 - ended_at_time: '2020-03-25T00:00:00+00:00' - execution_resource: LANL B-div - gap_pct: 0 - gc_avg: 0.57087 - gc_std: 0.09613 - git_url: https://github.com/microbiomedata/metaAssembly/releases/tag/1.0.0 - has_input: - - nmdc:b7e3ca7843cc0cf9a4944a9a9d3e2a66 - has_output: - - nmdc:df1fa16afe70385923b5d36cfe9513f4 - - nmdc:c4358d917f029c6fd0f8a81f4e0f1119 - - nmdc:d3bfc0e4a96431a4c07f46ad150b6edd - - nmdc:76655ec7b8a1e70a3cdf05bcd91ed9ed - - nmdc:8cebf127e41e82bd908676051acf154b - id: nmdc:wfmgas-99-CvgXTq - name: Metagenome assembly 1472_51278 - num_aligned_reads: 95369019 - num_input_reads: 141175680 - scaf_bp: 333164102 - scaf_l50: 432 - scaf_l90: 289 - scaf_l_gt50k: 0 - scaf_logsum: 483596 - scaf_max: 15780 - scaf_n50: 235059 - scaf_n90: 623912 - scaf_n_gt50k: 0 - scaf_pct_gt50k: 0 - scaf_powsum: 51427 - scaffolds: 747801 - started_at_time: '2020-03-25T00:00:00+00:00' - type: nmdc:MetagenomeAssembly - was_informed_by: gold:Gp0061274 -- asm_score: 3.527 - contig_bp: 279001661 - contigs: 607951 - ctg_l50: 449 - ctg_l90: 290 - ctg_logsum: 475574 - ctg_max: 26906 - ctg_n50: 183452 - ctg_n90: 505179 - ctg_powsum: 50819 - ended_at_time: '2020-03-25T00:00:00+00:00' - execution_resource: LANL B-div - gap_pct: 0 - gc_avg: 0.55832 - gc_std: 0.09898 - git_url: https://github.com/microbiomedata/metaAssembly/releases/tag/1.0.0 - has_input: - - nmdc:918109eabfaabfa7b7e948154c013e8a - has_output: - - nmdc:72f3b35ad52c9f2f17c39054ae05d8c7 - - nmdc:97deb14198281d7ff3e1a6d4ff7ab223 - - nmdc:2f4e213f4334bc304ff9d2f02c60e4a8 - - nmdc:66ac3134506a741f4e05b85a8b62e330 - - nmdc:1a84af1136a19bdd716320bdd0e47c67 - id: nmdc:wfmgas-99-L9Z34K - name: Metagenome assembly 1472_51279 - num_aligned_reads: 79146088 - num_input_reads: 116129794 - scaf_bp: 279001661 - scaf_l50: 449 - scaf_l90: 290 - scaf_l_gt50k: 0 - scaf_logsum: 475574 - scaf_max: 26906 - scaf_n50: 183452 - scaf_n90: 505179 - scaf_n_gt50k: 0 - scaf_pct_gt50k: 0 - scaf_powsum: 50819 - scaffolds: 607951 - started_at_time: '2020-03-25T00:00:00+00:00' - type: nmdc:MetagenomeAssembly - was_informed_by: gold:Gp0061275 - -``` -## Biosample-exhasutive +## Biosample-exhaustive-issue-796-bye-yq-for-7-4-10 ### Input ```yaml add_date: '2021-03-31' @@ -736,6 +672,8 @@ chlorophyll: climate_environment: - has_raw_value: tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M collected_from: nmdc:unconstrained_site_identifier_string +collection_date: + has_raw_value: '2018-05-11' collection_date_inc: '2023-01-29' collection_time: 05:42+0000 collection_time_inc: 13:42+0000 @@ -863,6 +801,8 @@ insdc_biosample_identifiers: isotope_exposure: 13C glucose lat_lon: has_raw_value: 50.586825 6.408977 + latitude: 50.586825 + longitude: 6.408977 lbc_thirty: has_raw_value: 543 mg/kg lbceq: @@ -930,7 +870,7 @@ perturbation: - has_raw_value: antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M petroleum_hydrocarb: has_raw_value: 0.05 micromole per liter -ph: 99.99 +ph: 11.22 ph_meth: has_raw_value: https://www.epa.gov/sites/production/files/2015-12/documents/9040c.pdf phaeopigments: @@ -1065,482 +1005,134 @@ zinc: has_raw_value: 2.5 mg/kg ``` -## MetagenomeSequencingActivity-from-metagenome_seequencing_activity_json -### Input -```yaml -ended_at_time: '2021-09-15T10:13:20+00:00' -execution_resource: JGI -git_url: '' -has_input: -- nmdc:unvalidated_placeholder -has_output: -- nmdc:22afa3d49b73eaec2e9787a6b88fbdc3 -id: nmdc:wfmsa-99-qwertyuiop -name: Sequencing Activity for nmdc:mga0vx38 -part_of: -- nmdc:mga0vx38 -started_at_time: '2021-08-05T14:48:51+00:00' -type: nmdc:MetagenomeSequencing -version: v1.0.0 -was_informed_by: gold:Gp0213371 - -``` -## Study-minimal -### Input -```yaml -id: nmdc:sty-11-ab - -``` -## Study-exhaustive +## Biosample-exhasutive ### Input ```yaml -abstract: Nothing was studied. -alternative_descriptions: -- any string 1 -- any string 2 +add_date: '2021-03-31' +agrochem_addition: +- has_raw_value: lime;1 kg/acre;2022-11-16T16:05:42+0000 +air_temp_regm: +- has_raw_value: 25 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M +al_sat: + has_raw_value: 0.1 mg/kg +al_sat_meth: + has_raw_value: https://journaljeai.com/index.php/JEAI/article/view/583 +alkalinity: + has_raw_value: 50 milligram per liter +alkalinity_method: + has_raw_value: https://wrrc.umass.edu/research/projects/acid-rain-monitoring-project/analysis-method-ph-and-alkalinity +alkyl_diethers: + has_raw_value: 0.005 mole per liter +alt: + has_raw_value: 100 meter alternative_identifiers: -- any string A1 -- any string A2 -alternative_names: -- any string 1 -- any string 2 -alternative_titles: -- any string 1 -- any string 2 -description: see also name, title, objective, various alternatives -doi: - has_raw_value: https://doi.org/10.1126/science.1058040 +- any_string +- seriously_anything +aminopept_act: + has_raw_value: 0.269 mole per liter per hour +ammonium: + has_raw_value: 1.5 milligram per liter +ammonium_nitrogen: + has_raw_value: 0.5 milligram per liter +analysis_type: +- metabolomics +- metagenomics +annual_precpt: + has_raw_value: 0.5 milligram per liter +annual_temp: + has_raw_value: 12.5 degree Celsius +bacteria_carb_prod: + has_raw_value: 2.53 microgram per liter per hour +biosample_categories: +- LTER +- FICUS +biotic_regm: + has_raw_value: sample inoculated with Rhizobium spp. Culture +biotic_relationship: parasite +bishomohopanol: + has_raw_value: 14 microgram per liter +bromide: + has_raw_value: 0.05 parts per million +calcium: + has_raw_value: 0.2 micromole per liter +carb_nitro_ratio: + has_raw_value: '0.417361111' +chem_administration: +- has_raw_value: agar [CHEBI:2509];2018-05-11T20:00Z +chloride: + has_raw_value: 5000 milligram per liter +chlorophyll: + has_raw_value: 5 milligram per cubic meter +climate_environment: +- has_raw_value: tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M +collected_from: nmdc:unconstrained_site_identifier_string +collection_date_inc: '2023-01-29' +collection_time: 05:42+0000 +collection_time_inc: 13:42+0000 +community: no_example_from_mixs +crop_rotation: + has_raw_value: yes;R2/2017-01-01/2018-12-31/P6M +cur_land_use: farmstead +cur_vegetation: + has_raw_value: MIxS doesn't provide any guidance more specific than "text" +cur_vegetation_meth: + has_raw_value: https://link.springer.com/article/10.1023/A:1011975321668 +density: + has_raw_value: 1000 kilogram per cubic meter +depth: + has_maximum_numeric_value: 2.5 + has_minimum_numeric_value: 1.5 + has_numeric_value: 2.0 + has_raw_value: 1.5 to 2.5 meters (that may not be the pattern the submission schema + expects). Extractions below require external migration logic. + has_unit: meter +description: unconstrained text +diss_carb_dioxide: + has_raw_value: 5 milligram per liter +diss_hydrogen: + has_raw_value: 0.3 micromole per liter +diss_inorg_carb: + has_raw_value: 2059 micromole per kilogram +diss_inorg_phosp: + has_raw_value: 56.5 micromole per liter +diss_org_carb: + has_raw_value: 197 micromole per liter +diss_org_nitro: + has_raw_value: 0.05 micromole per liter +diss_oxygen: + has_raw_value: 175 micromole per kilogram +dna_absorb1: '2.02' +dna_absorb2: '2.02' +dna_collect_site: untreated pond water +dna_concentration: '100' +dna_cont_type: plate +dna_cont_well: C2 +dna_container_id: Pond_MT_041618 +dna_dnase: 'yes' +dna_isolate_meth: phenol/chloroform extraction +dna_organisms: expected to contain microbes (59%) fungi (30%), viruses (10%), tadpoles + (1%) +dna_project_contact: John Jones +dna_samp_id: '187654' +dna_sample_format: 10 mM Tris-HCl +dna_sample_name: JGI_pond_041618 +dna_seq_project: '1191234' +dna_seq_project_name: JGI Pond metagenomics +dna_seq_project_pi: Jane Johnson +dna_volume: '25' +dnase_rna: 'yes' +drainage_class: well ecosystem: unconstrained text. should be validated against the controlled vocabulary, by the sample's environmental package. would also be nice to align the CV with MIxS environmental triads ecosystem_category: unconstrained text ecosystem_subtype: unconstrained text ecosystem_type: unconstrained text -emsl_proposal_doi: any string -emsl_proposal_identifier: any string EP1 -ess_dive_datasets: -- any string 1 -- any string 2 -funding_sources: -- any string 1 -- any string 2 -gold_study_identifiers: -- GOLD:Gs12345 -- GOLD:Gs90909 -has_credit_associations: -- applied_role: Funding acquisition - applied_roles: - - Supervision - - Conceptualization - applies_to_person: - email: jcventer@jcvi.org - has_raw_value: Craig Venter - name: J. Craig Venter - orcid: ORCID:0000-0002-7086-765X - profile_image_url: https://en.wikipedia.org/wiki/Craig_Venter#/media/File:Craigventer2.jpg - was_generated_by: nmdc:any_string_1 - websites: - - https://www.jcvi.org/ - - https://www.jcvi.org/about/j-craig-venter - type: any string -- applied_roles: - - Investigation - - Supervision - applies_to_person: - name: Tanja Davidsen -id: nmdc:sty-11-ab -mgnify_project_identifiers: mgnify.proj:ABC123 -name: see also description, title, objective, various alternatives -objective: This record, an instance of class Study from the nmdc-schema was had authored, - so that the NMDC team would have at least one instance, using all slots, with a - mixture of reasonable values and minimally compliant values. -principal_investigator: - email: jcventer@jcvi.org - has_raw_value: Craig Venter - name: J. Craig Venter - orcid: ORCID:0000-0002-7086-765X - profile_image_url: https://en.wikipedia.org/wiki/Craig_Venter#/media/File:Craigventer2.jpg - was_generated_by: nmdc:any_string_1 - websites: - - https://www.jcvi.org/ - - https://www.jcvi.org/about/j-craig-venter -publications: -- any string 1 -- any string 2 -related_identifiers: any string R1 -relevant_protocols: -- any string 1 -- any string 2 -specific_ecosystem: unconstrained text -study_image: -- description: Photo of Craig Venter Institute, Rockville, Maryland - display_order: '1' - has_raw_value: https://upload.wikimedia.org/wikipedia/commons/8/86/J._Craig_Vernter_Institute_Rockville_Maryland.jpg - url: https://upload.wikimedia.org/wikipedia/commons/8/86/J._Craig_Vernter_Institute_Rockville_Maryland.jpg - was_generated_by: nmdc:any_string_1 -- description: Photo of Craig Venter Institute, La Jolla, California - display_order: '2' - has_raw_value: https://today.ucsd.edu/news_uploads/140213ventor2.jpg - url: https://today.ucsd.edu/news_uploads/140213ventor2.jpg - was_generated_by: nmdc:any_string_1 -title: Sample Exhaustive Biosample instance. Although all of these values should pass - validation, that does not mean that any Biosample of any type would necessarily - have this particular combination of values. -type: any string -websites: -- https://w3id.org/nmdc -- https://w3id.org/linkml - -``` -## OmicsProcessing-1 -### Input -```yaml -add_date: 30-OCT-14 12.00.00.000000000 AM -alternative_identifiers: -- gold:Gp0108335 -has_input: -- gold:Gb0108335 -has_output: -- jgi:551a20d30d878525404e90d5 -id: nmdc:omprc-99-zUCd5N -mod_date: 22-MAY-20 06.13.12.927000000 PM -name: Thawing permafrost microbial communities from the Arctic, studying carbon transformations - - Permafrost 712P3D -ncbi_project_name: Thawing permafrost microbial communities from the Arctic, studying - carbon transformations - Permafrost 712P3D -omics_type: - has_raw_value: Metagenome -part_of: -- gold:Gs0112340 -processing_institution: JGI -type: nmdc:OmicsProcessing - -``` -## Database-mags-activities -### Input -```yaml -mags_activity_set: -- binned_contig_num: 489 - ended_at_time: '2021-01-10T00:00:00+00:00' - execution_resource: NERSC - Cori - git_url: https://img.jgi.doe.gov - has_input: - - nmdc:0a3d00715d01ad7b8f3aee59b674dfe9 - - nmdc:668d207be5ea844f988fbfb2813564cc - - nmdc:b7e9c8d0bffdd13ace6f862a61fa87d2 - has_output: - - nmdc:818f5a47d1371295f9313909ea12eb50 - - nmdc:e0b7421514f976cb7ad8c343cf3077a9 - - nmdc:a755bb87aded36aefbd8022506a793c7 - - nmdc:1346fe25b6ff22180eb3a51204e0b1fc - id: nmdc:wfmag-99-5MiDJM - input_contig_num: 169782 - low_depth_contig_num: 0 - mags_list: - - bin_name: bins.1 - bin_quality: LQ - completeness: 11.42 - contamination: 0.21 - gene_count: 250 - num_16s: 0 - num_23s: 0 - num_5s: 1 - num_t_rna: 1 - number_of_contig: 52 - - bin_name: bins.2 - bin_quality: LQ - completeness: 51.25 - contamination: 10.34 - gene_count: 2548 - num_16s: 0 - num_23s: 0 - num_5s: 1 - num_t_rna: 26 - number_of_contig: 426 - - bin_name: bins.3 - bin_quality: LQ - completeness: 2 - contamination: 0 - gene_count: 294 - num_16s: 0 - num_23s: 0 - num_5s: 0 - num_t_rna: 1 - number_of_contig: 11 - name: MAGs activiity 1781_86101 - started_at_time: '2021-01-10T00:00:00+00:00' - too_short_contig_num: 159810 - type: nmdc:MAGsAnalysisActivity - unbinned_contig_num: 9483 - was_informed_by: gold:Gp0115663 -- binned_contig_num: 206 - ended_at_time: '2021-01-10T00:00:00+00:00' - execution_resource: NERSC - Cori - git_url: https://img.jgi.doe.gov - has_input: - - nmdc:b78f599c21fb31b00d3f8a3c56daeb88 - - nmdc:662dc676b0b5a486248357f5b887c18b - - nmdc:bc034c7024043ea88b44d0897bb5bece - has_output: - - nmdc:c24915651cfdfc91f3e6b5bac679c3af - - nmdc:e8ec230bfe68a272b34540e7f5ab5b2b - - nmdc:474fa29bd39452fa80f5a32e9e6be6f4 - - nmdc:9800add41d26829494265ba81a100c53 - id: nmdc:wfmag-99-VOgM5i - input_contig_num: 78376 - low_depth_contig_num: 0 - mags_list: - - bin_name: bins.1 - bin_quality: LQ - completeness: 25.86 - contamination: 0 - gene_count: 401 - num_16s: 0 - num_23s: 0 - num_5s: 0 - num_t_rna: 4 - number_of_contig: 74 - - bin_name: bins.2 - bin_quality: LQ - completeness: 0 - contamination: 0 - gene_count: 383 - num_16s: 0 - num_23s: 0 - num_5s: 0 - num_t_rna: 5 - number_of_contig: 74 - - bin_name: bins.3 - bin_quality: LQ - completeness: 17.61 - contamination: 0 - gene_count: 313 - num_16s: 0 - num_23s: 0 - num_5s: 0 - num_t_rna: 7 - number_of_contig: 58 - name: MAGs activiity 1781_86089 - started_at_time: '2021-01-10T00:00:00+00:00' - too_short_contig_num: 75364 - type: nmdc:MAGsAnalysisActivity - unbinned_contig_num: 2806 - was_informed_by: gold:Gp0115664 - -``` -## Database-functional-annotations -### Input -```yaml -functional_annotation_set: -- has_function: KEGG_PATHWAY:rsk00410 -- has_function: KEGG.REACTION:R00100 -- has_function: RHEA:12345 -- has_function: MetaCyc:RXN-14904 -- has_function: EC:1.1.1.1 -- has_function: GO:0032571 -- has_function: MetaNetX:MNXR101574 -- has_function: SEED:Biotin_biosynthesis -- has_function: KEGG.ORTHOLOGY:K00001 -- has_function: EGGNOG:veNOG12876 -- has_function: PFAM:PF11779 -- has_function: TIGRFAM:TIGR00010 -- has_function: SUPFAM:SSF57615 -- has_function: CATH:1.10.10.200 -- has_function: PANTHER.FAMILY:PTHR12345 - -``` -## DataObject-minimal -### Input -```yaml -description: Crispr Terms for nmdc:ann0vx38 -id: nmdc:dobj-11-dtTMNb -name: Crispr Terms - -``` -## Study-credit-1 -### Input -```yaml -has_credit_associations: -- applied_roles: - - Data curation - applies_to_person: - orcid: orcid:0000-0002-1825-00 -- applied_roles: - - Software - applies_to_person: - orcid: orcid:0000-0001-9076-6066 -id: nmdc:sty-99-WoeqAi - -``` -## MetabolomicsAnalysisActivity-1 -### Input -```yaml -ended_at_time: '2021-09-15T10:13:20+00:00' -execution_resource: NERSC cori -git_url: https://example.org/WorkflowExecutionActivity -has_calibration: calibration with 0.01% phosphoric acid -has_input: -- nmdc:i1 -- nmdc:i2 -has_output: -- nmdc:o1 -- nmdc:o2 -id: nmdc:wfmb-99-ABCDEF -started_at_time: '2021-08-05T14:48:51+00:00' -type: WorkflowExecutionActivity -was_informed_by: nmdc:a1 - -``` -## Biosample-minimal -### Input -```yaml -env_broad_scale: - has_raw_value: ENVO:00002030 - term: - id: ENVO:00002030 -env_local_scale: - has_raw_value: ENVO:00002169 - term: - id: ENVO:00002169 -env_medium: - has_raw_value: ENVO:00005792 - term: - id: ENVO:00005792 -id: nmdc:bsm-99-dtTMNb -part_of: -- gold:Gs0110115 - -``` -## Biosample-exhaustive-issue-796-bye-yq-for-7-4-10 -### Input -```yaml -add_date: '2021-03-31' -agrochem_addition: -- has_raw_value: lime;1 kg/acre;2022-11-16T16:05:42+0000 -air_temp_regm: -- has_raw_value: 25 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M -al_sat: - has_raw_value: 0.1 mg/kg -al_sat_meth: - has_raw_value: https://journaljeai.com/index.php/JEAI/article/view/583 -alkalinity: - has_raw_value: 50 milligram per liter -alkalinity_method: - has_raw_value: https://wrrc.umass.edu/research/projects/acid-rain-monitoring-project/analysis-method-ph-and-alkalinity -alkyl_diethers: - has_raw_value: 0.005 mole per liter -alt: - has_raw_value: 100 meter -alternative_identifiers: -- any_string -- seriously_anything -aminopept_act: - has_raw_value: 0.269 mole per liter per hour -ammonium: - has_raw_value: 1.5 milligram per liter -ammonium_nitrogen: - has_raw_value: 0.5 milligram per liter -analysis_type: -- metabolomics -- metagenomics -annual_precpt: - has_raw_value: 0.5 milligram per liter -annual_temp: - has_raw_value: 12.5 degree Celsius -bacteria_carb_prod: - has_raw_value: 2.53 microgram per liter per hour -biosample_categories: -- LTER -- FICUS -biotic_regm: - has_raw_value: sample inoculated with Rhizobium spp. Culture -biotic_relationship: parasite -bishomohopanol: - has_raw_value: 14 microgram per liter -bromide: - has_raw_value: 0.05 parts per million -calcium: - has_raw_value: 0.2 micromole per liter -carb_nitro_ratio: - has_raw_value: '0.417361111' -chem_administration: -- has_raw_value: agar [CHEBI:2509];2018-05-11T20:00Z -chloride: - has_raw_value: 5000 milligram per liter -chlorophyll: - has_raw_value: 5 milligram per cubic meter -climate_environment: -- has_raw_value: tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M -collected_from: nmdc:unconstrained_site_identifier_string -collection_date: - has_raw_value: '2018-05-11' -collection_date_inc: '2023-01-29' -collection_time: 05:42+0000 -collection_time_inc: 13:42+0000 -community: no_example_from_mixs -crop_rotation: - has_raw_value: yes;R2/2017-01-01/2018-12-31/P6M -cur_land_use: farmstead -cur_vegetation: - has_raw_value: MIxS doesn't provide any guidance more specific than "text" -cur_vegetation_meth: - has_raw_value: https://link.springer.com/article/10.1023/A:1011975321668 -density: - has_raw_value: 1000 kilogram per cubic meter -depth: - has_maximum_numeric_value: 2.5 - has_minimum_numeric_value: 1.5 - has_numeric_value: 2.0 - has_raw_value: 1.5 to 2.5 meters (that may not be the pattern the submission schema - expects). Extractions below require external migration logic. - has_unit: meter -description: unconstrained text -diss_carb_dioxide: - has_raw_value: 5 milligram per liter -diss_hydrogen: - has_raw_value: 0.3 micromole per liter -diss_inorg_carb: - has_raw_value: 2059 micromole per kilogram -diss_inorg_phosp: - has_raw_value: 56.5 micromole per liter -diss_org_carb: - has_raw_value: 197 micromole per liter -diss_org_nitro: - has_raw_value: 0.05 micromole per liter -diss_oxygen: - has_raw_value: 175 micromole per kilogram -dna_absorb1: '2.02' -dna_absorb2: '2.02' -dna_collect_site: untreated pond water -dna_concentration: '100' -dna_cont_type: plate -dna_cont_well: C2 -dna_container_id: Pond_MT_041618 -dna_dnase: 'yes' -dna_isolate_meth: phenol/chloroform extraction -dna_organisms: expected to contain microbes (59%) fungi (30%), viruses (10%), tadpoles - (1%) -dna_project_contact: John Jones -dna_samp_id: '187654' -dna_sample_format: 10 mM Tris-HCl -dna_sample_name: JGI_pond_041618 -dna_seq_project: '1191234' -dna_seq_project_name: JGI Pond metagenomics -dna_seq_project_pi: Jane Johnson -dna_volume: '25' -dnase_rna: 'yes' -drainage_class: well -ecosystem: unconstrained text. should be validated against the controlled vocabulary, - by the sample's environmental package. would also be nice to align the CV with MIxS - environmental triads -ecosystem_category: unconstrained text -ecosystem_subtype: unconstrained text -ecosystem_type: unconstrained text -elev: 100 -embargoed: true -emsl_biosample_identifiers: -- any_string -- seriously_anything +elev: 100 +embargoed: true +emsl_biosample_identifiers: +- any_string +- seriously_anything env_broad_scale: has_raw_value: ENVO:00002030 term: @@ -1601,8 +1193,6 @@ insdc_biosample_identifiers: isotope_exposure: 13C glucose lat_lon: has_raw_value: 50.586825 6.408977 - latitude: 50.586825 - longitude: 6.408977 lbc_thirty: has_raw_value: 543 mg/kg lbceq: @@ -1670,7 +1260,7 @@ perturbation: - has_raw_value: antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M petroleum_hydrocarb: has_raw_value: 0.05 micromole per liter -ph: 11.22 +ph: 99.99 ph_meth: has_raw_value: https://www.epa.gov/sites/production/files/2015-12/documents/9040c.pdf phaeopigments: @@ -1805,91 +1395,421 @@ zinc: has_raw_value: 2.5 mg/kg ``` -## DataObject-3 +## Study-minimal +### Input +```yaml +id: nmdc:sty-11-ab + +``` +## Study-exhaustive +### Input +```yaml +abstract: Nothing was studied. +alternative_descriptions: +- any string 1 +- any string 2 +alternative_identifiers: +- any string A1 +- any string A2 +alternative_names: +- any string 1 +- any string 2 +alternative_titles: +- any string 1 +- any string 2 +description: see also name, title, objective, various alternatives +doi: + has_raw_value: https://doi.org/10.1126/science.1058040 +ecosystem: unconstrained text. should be validated against the controlled vocabulary, + by the sample's environmental package. would also be nice to align the CV with MIxS + environmental triads +ecosystem_category: unconstrained text +ecosystem_subtype: unconstrained text +ecosystem_type: unconstrained text +emsl_proposal_doi: any string +emsl_proposal_identifier: any string EP1 +ess_dive_datasets: +- any string 1 +- any string 2 +funding_sources: +- any string 1 +- any string 2 +gold_study_identifiers: +- GOLD:Gs12345 +- GOLD:Gs90909 +has_credit_associations: +- applied_role: Funding acquisition + applied_roles: + - Supervision + - Conceptualization + applies_to_person: + email: jcventer@jcvi.org + has_raw_value: Craig Venter + name: J. Craig Venter + orcid: ORCID:0000-0002-7086-765X + profile_image_url: https://en.wikipedia.org/wiki/Craig_Venter#/media/File:Craigventer2.jpg + was_generated_by: nmdc:any_string_1 + websites: + - https://www.jcvi.org/ + - https://www.jcvi.org/about/j-craig-venter + type: any string +- applied_roles: + - Investigation + - Supervision + applies_to_person: + name: Tanja Davidsen +id: nmdc:sty-11-ab +mgnify_project_identifiers: mgnify.proj:ABC123 +name: see also description, title, objective, various alternatives +objective: This record, an instance of class Study from the nmdc-schema was had authored, + so that the NMDC team would have at least one instance, using all slots, with a + mixture of reasonable values and minimally compliant values. +principal_investigator: + email: jcventer@jcvi.org + has_raw_value: Craig Venter + name: J. Craig Venter + orcid: ORCID:0000-0002-7086-765X + profile_image_url: https://en.wikipedia.org/wiki/Craig_Venter#/media/File:Craigventer2.jpg + was_generated_by: nmdc:any_string_1 + websites: + - https://www.jcvi.org/ + - https://www.jcvi.org/about/j-craig-venter +publications: +- any string 1 +- any string 2 +related_identifiers: any string R1 +relevant_protocols: +- any string 1 +- any string 2 +specific_ecosystem: unconstrained text +study_image: +- description: Photo of Craig Venter Institute, Rockville, Maryland + display_order: '1' + has_raw_value: https://upload.wikimedia.org/wikipedia/commons/8/86/J._Craig_Vernter_Institute_Rockville_Maryland.jpg + url: https://upload.wikimedia.org/wikipedia/commons/8/86/J._Craig_Vernter_Institute_Rockville_Maryland.jpg + was_generated_by: nmdc:any_string_1 +- description: Photo of Craig Venter Institute, La Jolla, California + display_order: '2' + has_raw_value: https://today.ucsd.edu/news_uploads/140213ventor2.jpg + url: https://today.ucsd.edu/news_uploads/140213ventor2.jpg + was_generated_by: nmdc:any_string_1 +title: Sample Exhaustive Biosample instance. Although all of these values should pass + validation, that does not mean that any Biosample of any type would necessarily + have this particular combination of values. +type: any string +websites: +- https://w3id.org/nmdc +- https://w3id.org/linkml + +``` +## DataObject-1 +### Input +```yaml +description: Metagenome Contig Coverage Stats for gold:Gp0061273 +file_size_bytes: 32787380 +id: nmdc:dobj-99-izwYW6 +name: mapping_stats.txt +type: nmdc:DataObject + +``` +## Database-with-MetagenomeSequencingActivity +### Input +```yaml +metagenome_sequencing_activity_set: +- ended_at_time: '2021-09-15T10:13:20+00:00' + execution_resource: JGI + git_url: '' + has_input: + - nmdc:unvalidated_placeholder + has_output: + - nmdc:22afa3d49b73eaec2e9787a6b88fbdc3 + id: nmdc:wfmsa-99-qwertyuiop + name: Sequencing Activity for nmdc:mga0vx38 + part_of: + - nmdc:mga0vx38 + started_at_time: '2021-08-05T14:48:51+00:00' + type: nmdc:MetagenomeSequencing + version: v1.0.0 + was_informed_by: gold:Gp0213371 + +``` +## Database-biosamples-sites +### Input +```yaml +biosample_set: +- collected_from: nmdc:frsite-99-SPreao + description: Root microbial communities from poplar common garden site in Clatskanie, + Oregon, USA + env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 + env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 + env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 + gold_biosample_identifiers: + - GOLD:Gb0305833 + id: nmdc:bsm-99-J9FcnC + name: Root microbial communities from poplar common garden site in Clatskanie, Oregon, + USA - BESC-13-CL1_35_33 endosphere + part_of: + - nmdc:sty-99-U21mUX +- collected_from: nmdc:frsite-99-SPreao + description: Rhizosphere soil microbial communities from poplar common garden site + in Clatskanie, Oregon, USA + env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 + env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 + env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 + gold_biosample_identifiers: + - GOLD:Gb0291692 + id: nmdc:bsm-99-BdlWdQ + name: Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, + Oregon, USA - BESC-13-CL1_35_33 + part_of: + - nmdc:sty-99-U21mUX +- collected_from: nmdc:frsite-99-SPreao + description: Bulk soil microbial communities from poplar common garden site in Clatskanie, + Oregon, USA + env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 + env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 + env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 + gold_biosample_identifiers: + - GOLD:Gb0291582 + id: nmdc:bsm-99-vn74Wq + name: Bulk soil microbial communities from poplar common garden site in Clatskanie, + Oregon, USA - BESC-13-CL1_35_33 + part_of: + - nmdc:sty-99-U21mUX +- collected_from: nmdc:frsite-99-h2mYFG + description: Root microbial communities from poplar common garden site in Clatskanie, + Oregon, USA + env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 + env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 + env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 + gold_biosample_identifiers: + - GOLD:Gb0305834 + id: nmdc:bsm-99-P8FdpS + name: Root microbial communities from poplar common garden site in Clatskanie, Oregon, + USA - BESC-13-CL2_39_29 endosphere + part_of: + - nmdc:sty-99-U21mUX +- collected_from: nmdc:frsite-99-h2mYFG + description: Rhizosphere soil microbial communities from poplar common garden site + in Clatskanie, Oregon, USA + env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 + env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 + env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 + gold_biosample_identifiers: + - GOLD:Gb0291693 + id: nmdc:bsm-99-ugBwz3 + name: Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, + Oregon, USA - BESC-13-CL2_39_29 + part_of: + - nmdc:sty-99-U21mUX +- collected_from: nmdc:frsite-99-h2mYFG + description: Bulk soil microbial communities from poplar common garden site in Clatskanie, + Oregon, USA + env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 + env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 + env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 + gold_biosample_identifiers: + - GOLD:Gb0291583 + id: nmdc:bsm-99-tN5lxM + name: Bulk soil microbial communities from poplar common garden site in Clatskanie, + Oregon, USA - BESC-13-CL2_39_29 + part_of: + - nmdc:sty-99-U21mUX +collecting_biosamples_from_site_set: +- has_inputs: + - nmdc:frsite-99-SPreao + has_outputs: + - nmdc:bsm-99-J9FcnC + - nmdc:bsm-99-BdlWdQ + - nmdc:bsm-99-vn74Wq + id: nmdc:clsite-99-Cq00d1 + name: Collection of biosamples from BESC-13-CL1_35_33 +- has_inputs: + - nmdc:frsite-99-h2mYFG + has_outputs: + - nmdc:bsm-99-P8FdpS + - nmdc:bsm-99-ugBwz3 + - nmdc:bsm-99-tN5lxM + id: nmdc:clsite-99-yzmLBN + name: Collection of biosamples from BESC-13-CL2_39_29 +field_research_site_set: +- description: Bioscales tree BESC-13-CL1_35_33 + id: nmdc:frsite-99-SPreao + name: BESC-13-CL1_35_33 +- description: Bioscales tree BESC-13-CL2_39_29 + id: nmdc:frsite-99-h2mYFG + name: BESC-13-CL2_39_29 + +``` +## MetagenomeSequencingActivity-from-metagenome_seequencing_activity_json +### Input +```yaml +ended_at_time: '2021-09-15T10:13:20+00:00' +execution_resource: JGI +git_url: '' +has_input: +- nmdc:unvalidated_placeholder +has_output: +- nmdc:22afa3d49b73eaec2e9787a6b88fbdc3 +id: nmdc:wfmsa-99-qwertyuiop +name: Sequencing Activity for nmdc:mga0vx38 +part_of: +- nmdc:mga0vx38 +started_at_time: '2021-08-05T14:48:51+00:00' +type: nmdc:MetagenomeSequencing +version: v1.0.0 +was_informed_by: gold:Gp0213371 + +``` +## FunctionalAnnotation-minimal +### Input +```yaml +has_function: KEGG_PATHWAY:abc12345 + +``` +## Database-MetabolomicsAnalysisActivity-1 +### Input +```yaml +metabolomics_analysis_activity_set: +- ended_at_time: '2021-09-15T10:13:20+00:00' + execution_resource: NERSC cori + git_url: https://example.org/WorkflowExecutionActivity + has_calibration: calibration with 0.01% phosphoric acid + has_input: + - nmdc:i1 + - nmdc:i2 + has_output: + - nmdc:o1 + - nmdc:o2 + id: nmdc:wfmb-99-ABCDEF + name: Metabolomics Analysis Activity for nmdc:wfmb-99-ABCDEF + started_at_time: '2021-08-05T14:48:51+00:00' + type: WorkflowExecutionActivity + was_informed_by: nmdc:a1 + +``` +## DataObject-exhaustive +### Input +```yaml +alternative_identifiers: +- prefix:value1 +- prefix:value2 +compression_type: any string +data_object_type: Crispr Terms +description: Crispr Terms for nmdc:ann0vx38 +file_size_bytes: 1234 +id: nmdc:dobj-11-dtTMNb +md5_checksum: 22afa3d49b73eaec2e9787a6b88fbdc3 +name: Crispr Terms +type: nmdc:DataObject +url: http://example.com +was_generated_by: nmdc:invalid_id + +``` +## Biosample-minimal ### Input ```yaml -description: Metagenome Contig Coverage Stats for gold:Gp0061273 -file_size_bytes: 32787380 -id: nmdc:dobj-99-izwYW6 -name: mapping_stats.txt -type: nmdc:DataObject +env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 +env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 +env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 +id: nmdc:bsm-99-dtTMNb +part_of: +- gold:Gs0110115 ``` -## Database-sample-prep +## MetabolomicsAnalysisActivity-1 ### Input ```yaml -dissolving_activity_set: -- dissolution_aided_by: - activity_speed: - has_numeric_value: 800 - has_unit: RPM - activity_time: - has_numeric_value: 2 - has_unit: hours - device_type: orbital_shaker - dissolution_reagent: deionized_water - dissolution_volume: - has_numeric_value: 30 - has_unit: mL - dissolved_in: - container_size: - has_numeric_value: 50 - has_unit: mL - container_type: screw_top_conical - material_input: nmdc:matsm-b1fb4ff1-e59b-4e2b-a8f9-b95ea6ba4135 - material_output: nmdc:matsm-181a7a0a-4b04-4a22-9b89-db53e2ccdc99 -material_sample_set: -- description: a soil biosample - id: nmdc:matsm-99-PVhTGD - name: monet_data:soil_1 -- description: a 6 gram aliquot of monet_data:soil_1 - id: nmdc:matsm-99-m7PfV8 - name: nmdc:matsm-b1fb4ff1-e59b-4e2b-a8f9-b95ea6ba4135 -- description: monet_data:somextract_6 dissolved in 30 mL of water - id: nmdc:matsm-99-j670OL - name: monet_data:somextract_7 -- description: something at the beginning of a reaction - id: nmdc:matsm-99-KyiIwv - name: monet_data:derive_4 -- description: something at the end of a reaction - id: nmdc:matsm-99-KaZog6 - name: monet_data:derive_5 -material_sampling_activity_set: -- amount_collected: - has_numeric_value: 6 - has_unit: grams - biosample_input: nmdc:matsm-bfc5b458-1c62-44e7-886a-dd3a2cc7ad67 - collected_into: - container_size: - has_numeric_value: 50 - has_unit: mL - container_type: screw_top_conical - material_output: nmdc:matsm-b1fb4ff1-e59b-4e2b-a8f9-b95ea6ba4135 - sampling_method: weighing -reaction_activity_set: -- material_input: nmdc:matsm-31380f3c-cea3-4f68-a8c6-cd84efa5e622 - material_output: nmdc:matsm-9fe9277b-454a-4257-a825-3b4725df665e - reaction_aided_by: - activity_temperature: - has_numeric_value: 37 - has_unit: degrees Celsius - activity_time: - has_numeric_value: 1.5 - has_unit: hours - device_type: thermomixer +ended_at_time: '2021-09-15T10:13:20+00:00' +execution_resource: NERSC cori +git_url: https://example.org/WorkflowExecutionActivity +has_calibration: calibration with 0.01% phosphoric acid +has_input: +- nmdc:i1 +- nmdc:i2 +has_output: +- nmdc:o1 +- nmdc:o2 +id: nmdc:wfmb-99-ABCDEF +started_at_time: '2021-08-05T14:48:51+00:00' +type: WorkflowExecutionActivity +was_informed_by: nmdc:a1 ``` -## Database-nmdc-example +## Database-biosamples-1 ### Input ```yaml biosample_set: -- add_date: 17-MAR-17 04.55.54.717000000 PM +- add_date: 28-JUL-14 12.00.00.000000000 AM community: microbial communities - description: Permafrost microbial communities from Stordalen Mire, Sweden + description: Bulk Aqueous phase filtered water ecosystem: Environmental - ecosystem_category: Terrestrial - ecosystem_subtype: Wetlands - ecosystem_type: Soil + ecosystem_category: Aquatic + ecosystem_subtype: Groundwater + ecosystem_type: Freshwater env_broad_scale: has_raw_value: ENVO:00002030 term: @@ -1903,33 +1823,156 @@ biosample_set: term: id: ENVO:00005792 geo_loc_name: - has_raw_value: 'Sweden: Stordalen' + has_raw_value: Lithgow gold_biosample_identifiers: - - GOLD:Gb0150408 - habitat: Fen - id: nmdc:bsm-99-isqhuW + - GOLD:Gb0101224 + habitat: Coalbed water + id: nmdc:bsm-99-dtTMNb lat_lon: - has_raw_value: 68.35 19.05 - location: Stordalen Mire, Sweden - mod_date: 08-JAN-20 02.49.23.000000000 PM - name: Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG - ncbi_taxonomy_name: permafrost metagenome + has_raw_value: -33.460524 150.168149 + location: from the Lithgow State Coal Mine, New South Wales, Australia + mod_date: 26-AUG-16 01.50.27.000000000 PM + name: Lithgow State Coal Mine Calcium nutrients (early) + ncbi_taxonomy_name: coal metagenome part_of: - - GOLD:Gs0128849 - samp_name: 11E1M metaG - sample_collection_site: Mire fen - specific_ecosystem: Permafrost + - gold:Gs0110115 + samp_taxon_id: + has_raw_value: coal metagenome [NCBITaxon:1260732] + sample_collection_site: Lithgow State Coal Mine + specific_ecosystem: Coalbed water + type: nmdc:Biosample +- add_date: 28-JUL-14 12.00.00.000000000 AM + biosample_categories: + - LTER + - SIP + community: microbial communities + description: Bulk Aqueous phase filtered water + ecosystem: Environmental + ecosystem_category: Aquatic + ecosystem_subtype: Groundwater + ecosystem_type: Freshwater + env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 + env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 + env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 + geo_loc_name: + has_raw_value: Lithgow + gold_biosample_identifiers: + - GOLD:Gb0101224 + habitat: Coalbed water + id: nmdc:bsm-99-AtTUOs + lat_lon: + has_raw_value: -33.460524 150.168149 + location: from the Lithgow State Coal Mine, New South Wales, Australia + mod_date: 26-AUG-16 01.50.27.000000000 PM + name: Lithgow State Coal Mine Calcium nutrients (early) + ncbi_taxonomy_name: coal metagenome + part_of: + - gold:Gs0110115 + samp_taxon_id: + has_raw_value: coal metagenome [NCBITaxon:1260732] + sample_collection_site: Lithgow State Coal Mine + specific_ecosystem: Coalbed water + type: nmdc:Biosample +- add_date: 28-JUL-14 12.00.00.000000000 AM + community: microbial communities + description: Bulk Aqueous phase filtered water + ecosystem: Environmental + ecosystem_category: Aquatic + ecosystem_subtype: Groundwater + ecosystem_type: Freshwater + env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 + env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 + env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 + geo_loc_name: + has_raw_value: Lithgow + gold_biosample_identifiers: + - GOLD:Gb0101225 + habitat: Coalbed water + id: nmdc:bsm-99-eBVHjN + lat_lon: + has_raw_value: -33.460524 150.168149 + location: from the Lithgow State Coal Mine, New South Wales, Australia + mod_date: 26-AUG-16 01.50.27.000000000 PM + name: Lithgow State Coal Mine Calcium nutrients Extra + ncbi_taxonomy_name: coal metagenome + part_of: + - gold:Gs0110115 + samp_taxon_id: + has_raw_value: coal metagenome [NCBITaxon:1260732] + sample_collection_site: Lithgow State Coal Mine + specific_ecosystem: Coalbed water + type: nmdc:Biosample +- add_date: 28-JUL-14 12.00.00.000000000 AM + community: microbial communities + description: Bulk Aqueous phase filtered water + ecosystem: Environmental + ecosystem_category: Aquatic + ecosystem_subtype: Groundwater + ecosystem_type: Freshwater + env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 + env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 + env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 + geo_loc_name: + has_raw_value: Lithgow + gold_biosample_identifiers: + - GOLD:Gb0101226 + habitat: Coalbed water + id: nmdc:bsm-99-TDPHTh + lat_lon: + has_raw_value: -33.460524 150.168149 + location: from the Lithgow State Coal Mine, New South Wales, Australia + mod_date: 26-AUG-16 01.50.27.000000000 PM + name: Lithgow State Coal Mine Calcium nutrients + ncbi_taxonomy_name: coal metagenome + part_of: + - gold:Gs0110115 + samp_taxon_id: + has_raw_value: coal metagenome [NCBITaxon:1260732] + sample_collection_site: Lithgow State Coal Mine + specific_ecosystem: Coalbed water type: nmdc:Biosample -- add_date: 17-AUG-17 05.38.34.719000000 PM - community: microbial communities - description: Forest soil from Barre Woods Harvard Forest LTER site was incubated - at 10C with heavy water. Sample is from a control plot at ambient soil temperature, - organic horizon - top 4cm of soil - ecosystem: Environmental - ecosystem_category: Terrestrial - ecosystem_subtype: Unclassified - ecosystem_type: Soil - env_broad_scale: + +``` +## DataObject-minimal +### Input +```yaml +description: Crispr Terms for nmdc:ann0vx38 +id: nmdc:dobj-11-dtTMNb +name: Crispr Terms + +``` +## Database-multiple-paths +### Input +```yaml +biosample_set: +- env_broad_scale: has_raw_value: ENVO:00002030 term: id: ENVO:00002030 @@ -1941,35 +1984,11 @@ biosample_set: has_raw_value: ENVO:00005792 term: id: ENVO:00005792 - geo_loc_name: - has_raw_value: 'USA: Massachusetts' - gold_biosample_identifiers: - - GOLD:Gb0157174 - habitat: soil - id: nmdc:bsm-99-dge3H9 - lat_lon: - has_raw_value: 42.481016 -72.178343 - location: Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United - States - mod_date: 08-JAN-20 02.49.23.000000000 PM - name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, - Petersham, Massachusetts, United States - Inc-BW-C-14-O - ncbi_taxonomy_name: soil metagenome + id: nmdc:bsm-99-dtTMNb + name: real biosample from the field part_of: - - GOLD:Gs0128849 - samp_name: Inc-BW-C-14-O - sample_collection_site: forest soil - specific_ecosystem: Forest Soil - type: nmdc:Biosample -- add_date: 29-MAR-18 01.27.40.709000000 PM - community: microbial communities - description: Rhizosphere microbial communities from Carex aquatilis grown in submerged - peat from a thermokarst bog, University of Washington, Seatle, WA, United States - ecosystem: Host-associated - ecosystem_category: Plants - ecosystem_subtype: Soil - ecosystem_type: Rhizosphere - env_broad_scale: + - gold:Gs0110115 +- env_broad_scale: has_raw_value: ENVO:00002030 term: id: ENVO:00002030 @@ -1981,171 +2000,89 @@ biosample_set: has_raw_value: ENVO:00005792 term: id: ENVO:00005792 - geo_loc_name: - has_raw_value: 'USA: Seattle, Washington' - gold_biosample_identifiers: - - GOLD:Gb0188037 - habitat: rhizosphere - host_name: Carex aquatilis - id: nmdc:bsm-99-dc6tg6 - lat_lon: - has_raw_value: 47.6516 -122.3045 - location: University of Washington, Seatle, WA, United States - mod_date: 08-JAN-20 02.49.25.000000000 PM - name: Rhizosphere microbial communities from Carex aquatilis grown in University - of Washington, Seatle, WA, United States - 4-1-23 metaG - ncbi_taxonomy_name: rhizosphere metagenome + id: nmdc:bsm-99-XYZ + name: one DNA library, like an analytical sample part_of: - - GOLD:Gs0128849 - samp_name: 4-1-23 metaG - sample_collection_site: Peat Soil - specific_ecosystem: Unclassified - type: nmdc:Biosample -data_object_set: -- description: Raw sequencer read data - file_size_bytes: 9208349052 - id: nmdc:dobj-99-dkJ8xX - name: 11340.8.202049.GTCTCCT-AAGGAGA.fastq.gz - type: nmdc:DataObject -- description: Raw sequencer read data - file_size_bytes: 34243309819 - id: nmdc:dobj-99-7zrm55 - name: 11839.4.222578.GAGCTCA-TTGAGCT.fastq.gz - type: nmdc:DataObject -- description: Raw sequencer read data - file_size_bytes: 7580035314 - id: nmdc:dobj-99-sQQw0I - name: 12660.4.274923.GATCGTAC-GTACGATC.fastq.gz - type: nmdc:DataObject + - gold:Gs0110115 omics_processing_set: -- add_date: 17-AUG-17 05.08.38.451000000 PM - alternative_identifiers: - - GOLD:Gp0225767 - description: Forest soil from Barre Woods Harvard Forest LTER site was incubated - at 10C with heavy water. Sample is from a control plot at ambient soil temperature, - organic horizon - top 4cm of soil - has_input: - - GOLD:Gb0157174 - has_output: - - jgi:599c3a117ded5e41edd7da77 - id: nmdc:omprc-99-9XUVVF - mod_date: 16-OCT-20 02.04.01.374000000 AM - name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, - Petersham, Massachusetts, United States - Inc-BW-C-14-O - ncbi_project_name: Forest soil microbial communities from Barre Woods Harvard Forest - LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O - omics_type: - has_raw_value: Metagenome - part_of: - - GOLD:Gs0130354 - processing_institution: JGI - type: nmdc:OmicsProcessing -- add_date: 17-MAR-17 04.55.44.822000000 PM - alternative_identifiers: - - GOLD:Gp0208560 - description: Permafrost microbial communities from Stordalen Mire, Sweden - has_input: - - GOLD:Gb0150408 - has_output: - - jgi:58b653757ded5e7a2af951c4 - id: nmdc:omprc-99-dk9vgI - mod_date: 22-MAY-20 06.38.19.576000000 PM - name: Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG - ncbi_project_name: Permafrost microbial communities from Stordalen Mire, Sweden - - 611E1M metaG - omics_type: - has_raw_value: Metagenome - part_of: - - GOLD:Gs0128849 - processing_institution: JGI - type: nmdc:OmicsProcessing -- add_date: 29-MAR-18 01.27.30.036000000 PM +- add_date: 30-OCT-14 12.00.00.000000000 AM alternative_identifiers: - - GOLD:Gp0306221 - description: Rhizosphere microbial communities from Carex aquatilis grown in submerged - peat from a thermokarst bog, University of Washington, Seatle, WA, United States + - gold:Gp0108335 has_input: - - GOLD:Gb0188037 + - gold:Gb0108335 has_output: - - jgi:5baa816646d1e63f764deb37 - id: nmdc:omprc-99-MVW1FV - mod_date: 04-APR-20 08.26.35.067000000 AM - name: Rhizosphere microbial communities from Carex aquatilis grown in University - of Washington, Seatle, WA, United States - 4-1-23 metaG - ncbi_project_name: Rhizosphere microbial communities from Carex aquatilis grown - in University of Washington, Seatle, WA, United States - 4-1-23 metaG + - jgi:551a20d30d878525404e90d5 + id: nmdc:omprc-99-zUCd5N + mod_date: 22-MAY-20 06.13.12.927000000 PM + name: a process in which a biosample was sequenced? + ncbi_project_name: Thawing permafrost microbial communities from the Arctic, studying + carbon transformations - Permafrost 712P3D omics_type: has_raw_value: Metagenome part_of: - - GOLD:Gs0134277 + - gold:Gs0112340 processing_institution: JGI type: nmdc:OmicsProcessing -study_set: -- description: Thawing permafrost is one of the largest soil carbon pools on the planet. - The goal of this project is to study microbial communities that participate in - the soil carbon cycle. - doi: - has_raw_value: 10.25585/1488217 - ecosystem: Environmental - ecosystem_category: Terrestrial - ecosystem_subtype: Wetlands - ecosystem_type: Soil - gold_study_identifiers: - - GOLD:Gs0128849 - id: nmdc:sty-99-FkQIsc - name: Permafrost microbial communities from Stordalen Mire, Sweden - principal_investigator: - has_raw_value: Virginia Rich - specific_ecosystem: Permafrost - type: nmdc:Study -- description: The goal of this study is to learn the molecular mechanisms underlying - changes in the temperature sensitive respiration response of forest soils to long-term - experimental warming - doi: - has_raw_value: 10.25585/1488215 - ecosystem: Environmental - ecosystem_category: Terrestrial - ecosystem_subtype: Unclassified - ecosystem_type: Soil - gold_study_identifiers: - - GOLD:Gs0130354 - id: nmdc:sty-99-oJmAOs - name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, - Petersham, Massachusetts, United States - principal_investigator: - has_raw_value: Jeffrey Blanchard - specific_ecosystem: Forest Soil - type: nmdc:Study -- description: The goal of this study is to advance understanding of the response - of methane production and methane oxidation to changes in plant productivity so - that modeled representations of these processes and interactions can be improved. - doi: - has_raw_value: 10.25585/1488209 - ecosystem: Host-associated - ecosystem_category: Plants - ecosystem_subtype: Rhizosphere - ecosystem_type: Roots - gold_study_identifiers: - - GOLD:Gs0134277 - id: nmdc:sty-99-3bQQ4j - name: Rhizosphere microbial communities from Carex aquatilis grown in University - of Washington, Seatle, WA, United States - principal_investigator: - has_raw_value: Rebecca Neumann - specific_ecosystem: Soil - type: nmdc:Study ``` -## FunctionalAnnotation-invalid-function +## DataObject-3 ### Input ```yaml -has_function: KEGG_PATHWAY:XOXOXOXO +description: Metagenome Contig Coverage Stats for gold:Gp0061273 +file_size_bytes: 32787380 +id: nmdc:dobj-99-izwYW6 +name: mapping_stats.txt +type: nmdc:DataObject + +``` +## DataObject-2 +### Input +```yaml +description: Assembled scaffold fasta for gold:Gp0061273 +file_size_bytes: 205297945 +id: nmdc:dobj-99-PqBJvW +name: assembly_scaffolds.fna +type: nmdc:DataObject + +``` +## Biosample-minimal-2 +### Input +```yaml +env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 +env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 +env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 +id: nmdc:bsm-99-dtTMNb +part_of: +- gold:Gs0110115 + +``` +## Study-credit-1 +### Input +```yaml +has_credit_associations: +- applied_roles: + - Data curation + applies_to_person: + orcid: orcid:0000-0002-1825-00 +- applied_roles: + - Software + applies_to_person: + orcid: orcid:0000-0001-9076-6066 +id: nmdc:sty-99-WoeqAi ``` -## Biosample-non_boolean_embargo +## Biosample-with-fire ### Input ```yaml -embargoed: 999 env_broad_scale: has_raw_value: ENVO:00002030 term: @@ -2158,15 +2095,102 @@ env_medium: has_raw_value: ENVO:00005792 term: id: ENVO:00005792 +fire: 1871-10-01 to 1871-10-31 id: nmdc:bsm-99-dtTMNb part_of: - gold:Gs0110115 ``` -## DataObject-no-id-or-name +## Database-functional-annotations ### Input ```yaml -description: Crispr Terms for nmdc:ann0vx38 +functional_annotation_set: +- has_function: KEGG_PATHWAY:rsk00410 +- has_function: KEGG.REACTION:R00100 +- has_function: RHEA:12345 +- has_function: MetaCyc:RXN-14904 +- has_function: EC:1.1.1.1 +- has_function: GO:0032571 +- has_function: MetaNetX:MNXR101574 +- has_function: SEED:Biotin_biosynthesis +- has_function: KEGG.ORTHOLOGY:K00001 +- has_function: EGGNOG:veNOG12876 +- has_function: PFAM:PF11779 +- has_function: TIGRFAM:TIGR00010 +- has_function: SUPFAM:SSF57615 +- has_function: CATH:1.10.10.200 +- has_function: PANTHER.FAMILY:PTHR12345 + +``` +## FunctionalAnnotation-exhaustive +### Input +```yaml +has_function: KEGG_PATHWAY:abc12345 +subject: nmdc:gene_product_1 +was_generated_by: nmdc:activity_1 + +``` +## Database-omics-processings +### Input +```yaml +omics_processing_set: +- add_date: 30-OCT-14 12.00.00.000000000 AM + alternative_identifiers: + - gold:Gp0108335 + has_input: + - gold:Gb0108335 + has_output: + - jgi:551a20d30d878525404e90d5 + id: nmdc:omprc-99-zUCd5N + mod_date: 22-MAY-20 06.13.12.927000000 PM + name: Thawing permafrost microbial communities from the Arctic, studying carbon + transformations - Permafrost 712P3D + ncbi_project_name: Thawing permafrost microbial communities from the Arctic, studying + carbon transformations - Permafrost 712P3D + omics_type: + has_raw_value: Metagenome + part_of: + - gold:Gs0112340 + processing_institution: JGI + type: nmdc:OmicsProcessing +- add_date: 30-OCT-14 12.00.00.000000000 AM + alternative_identifiers: + - gold:Gp0108340 + has_input: + - gold:Gb0108340 + has_output: + - jgi:551a20d50d878525404e90d7 + id: nmdc:omprc-99-gKlQlF + mod_date: 22-MAY-20 06.10.59.590000000 PM + name: Thawing permafrost microbial communities from the Arctic, studying carbon + transformations - Permafrost 612S3M + ncbi_project_name: Thawing permafrost microbial communities from the Arctic, studying + carbon transformations - Permafrost 612S3M + omics_type: + has_raw_value: Metagenome + part_of: + - gold:Gs0112340 + processing_institution: JGI + type: nmdc:OmicsProcessing +- add_date: 30-OCT-14 12.00.00.000000000 AM + alternative_identifiers: + - gold:Gp0108341 + has_input: + - gold:Gb0108341 + has_output: + - jgi:551a20d90d878525404e90e1 + id: nmdc:omprc-99-5kgIJR + mod_date: 22-MAY-20 06.09.46.171000000 PM + name: Thawing permafrost microbial communities from the Arctic, studying carbon + transformations - Permafrost 712S3S + ncbi_project_name: Thawing permafrost microbial communities from the Arctic, studying + carbon transformations - Permafrost 712S3S + omics_type: + has_raw_value: Metagenome + part_of: + - gold:Gs0112340 + processing_institution: JGI + type: nmdc:OmicsProcessing ``` ## Database-invalid-omics-processing @@ -2231,6 +2255,94 @@ omics_processing_set: processing_institution: JGI type: nmdc:OmicsProcessing +``` +## Biosample-invalid_fire +### Input +```yaml +env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 +env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 +env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 +fire: like a volcano +id: nmdc:bsm-99-dtTMNb +part_of: +- gold:Gs0110115 + +``` +## Database-invalid-studies +### Input +```yaml +study_set: +- baz: blah + description: Using analytical expertise at both the JGI and EMSL, we plan to follow + successional patterns of protein expression + doi: + has_raw_value: 10.25585/1487760 + ecosystem: Host-associated + ecosystem_category: Plants + ecosystem_subtype: Soil + ecosystem_type: Rhizosphere + foo: bar + id: gold:Gs0110115 + name: Avena fatua rhizosphere microbial communities from Hopland, California, USA, + for root-enhanced decomposition of organic matter studies + principal_investigator_name: + has_raw_value: Mary Firestone + specific_ecosystem: Unclassified + type: nmdc:Study +- description: We propose to utilize the unique resources at EMSL and the JGI to obtain + a better understanding of the phylogenetic and functional diversity of cyanobacteria + doi: + has_raw_value: 10.25585/1487758 + ecosystem: Host-associated + ecosystem_category: Microbial + ecosystem_subtype: Unclassified + ecosystem_type: Bacteria + id: gold:Gs0110132 + name: Cyanobacterial communities from the Joint Genome Institute, California, USA + principal_investigator_name: + has_raw_value: Matthias Hess + specific_ecosystem: Unclassified + type: nmdc:Study +- description: A fundamental challenge of microbial environmental science is to understand + how earth systems will respond to climate change + doi: + has_raw_value: 10.25585/1487764 + ecosystem: Environmental + ecosystem_category: Terrestrial + ecosystem_subtype: Wetlands + ecosystem_type: Soil + id: gold:Gs0112340 + name: Thawing permafrost microbial communities from the Arctic, studying carbon + transformations + principal_investigator_name: + has_raw_value: Virginia Rich + specific_ecosystem: Permafrost + type: nmdc:Study + +``` +## Study-invalid-1 +### Input +```yaml +has_credit_associations: +- applied_role: Value Not In Enum 1 + applies_to_person: + orcid: orcid:0000-0002-1825-00 + type: credit association +- applied_role: ValueNotInEnum2 + applies_to_person: + orcid: orcid:0000-0001-9076-6066 + type: credit association +id: example:123 + ``` ## Database-biosample_mismatch_regex ### Input @@ -2352,6 +2464,27 @@ biosample_set: specific_ecosystem: Coalbed water type: nmdc:Biosample +``` +## Biosample-non_boolean_embargo +### Input +```yaml +embargoed: 999 +env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 +env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 +env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 +id: nmdc:bsm-99-dtTMNb +part_of: +- gold:Gs0110115 + ``` ## Biosample-invalid-embargoed ### Input @@ -2373,6 +2506,12 @@ id: nmdc:bsm-99-dtTMNb part_of: - gold:Gs0110115 +``` +## FunctionalAnnotation-invalid-function +### Input +```yaml +has_function: KEGG_PATHWAY:XOXOXOXO + ``` ## OmicsProcessing-invalid-omics-type ### Input @@ -2397,6 +2536,31 @@ part_of: processing_institution: JGI type: nmdc:OmicsProcessing +``` +## DataObject-no-id-or-name +### Input +```yaml +description: Crispr Terms for nmdc:ann0vx38 + +``` +## MetagenomeSequencingActivity-no_parthood +### Input +```yaml +ended_at_time: '2021-09-15T10:13:20+00:00' +execution_resource: JGI +git_url: '' +has_input: +- nmdc:unvalidated_placeholder +has_output: +- nmdc:22afa3d49b73eaec2e9787a6b88fbdc3 +id: nmdc:wfmsa-99-qwertyuiop +name: Sequencing Activity for nmdc:mga0vx38 +part_of: null +started_at_time: '2021-08-05T14:48:51+00:00' +type: nmdc:MetagenomeSequencing +version: v1.0.0 +was_informed_by: gold:Gp0213371 + ``` ## Database-Biosample-invalid_range ### Input @@ -2518,22 +2682,7 @@ biosample_set: type: nmdc:Biosample ``` -## Study-invalid-1 -### Input -```yaml -has_credit_associations: -- applied_role: Value Not In Enum 1 - applies_to_person: - orcid: orcid:0000-0002-1825-00 - type: credit association -- applied_role: ValueNotInEnum2 - applies_to_person: - orcid: orcid:0000-0001-9076-6066 - type: credit association -id: example:123 - -``` -## Database-biosample_missing_required_field +## Database-biosample_single_multi_value_mixup ### Input ```yaml biosample_set: @@ -2559,6 +2708,9 @@ biosample_set: geo_loc_name: has_raw_value: Lithgow habitat: Coalbed water + id: + - gold:Gb0101224 + - gold:Gb0101225 lat_lon: has_raw_value: -33.460524 150.168149 latitude: -33.460524 @@ -2567,9 +2719,13 @@ biosample_set: mod_date: 26-AUG-16 01.50.27.000000000 PM name: Lithgow State Coal Mine Calcium nutrients (early) ncbi_taxonomy_name: coal metagenome + part_of: + - gold:Gs0128849 sample_collection_site: Lithgow State Coal Mine specific_ecosystem: Coalbed water - type: nmdc:Biosample + type: + - nmdc:Biosample + - nmdc:FunctionalAnnotation - add_date: 28-JUL-14 12.00.00.000000000 AM community: microbial communities description: Bulk Aqueous phase filtered water @@ -2591,7 +2747,10 @@ biosample_set: id: ENVO:00005792 geo_loc_name: has_raw_value: Lithgow + gold_biosample_identifiers: + - gold:Gb0101225 habitat: Coalbed water + id: nmdc:e924072f-98b5-4f88-a796-a7ba1d8ddd92 lat_lon: has_raw_value: -33.460524 150.168149 latitude: -33.460524 @@ -2600,6 +2759,8 @@ biosample_set: mod_date: 26-AUG-16 01.50.27.000000000 PM name: Lithgow State Coal Mine Calcium nutrients Extra ncbi_taxonomy_name: coal metagenome + part_of: + - gold:Gs0128849 sample_collection_site: Lithgow State Coal Mine specific_ecosystem: Coalbed water type: nmdc:Biosample @@ -2624,7 +2785,10 @@ biosample_set: id: ENVO:00005792 geo_loc_name: has_raw_value: Lithgow + gold_biosample_identifiers: + - gold:Gb0101226 habitat: Coalbed water + id: nmdc:61c3332d-f654-4db8-8d2f-59475894daa5 lat_lon: has_raw_value: -33.460524 150.168149 latitude: -33.460524 @@ -2633,115 +2797,12 @@ biosample_set: mod_date: 26-AUG-16 01.50.27.000000000 PM name: Lithgow State Coal Mine Calcium nutrients ncbi_taxonomy_name: coal metagenome + part_of: + - gold:Gs0128849 sample_collection_site: Lithgow State Coal Mine specific_ecosystem: Coalbed water type: nmdc:Biosample -``` -## MetagenomeSequencingActivity-no_parthood -### Input -```yaml -ended_at_time: '2021-09-15T10:13:20+00:00' -execution_resource: JGI -git_url: '' -has_input: -- nmdc:unvalidated_placeholder -has_output: -- nmdc:22afa3d49b73eaec2e9787a6b88fbdc3 -id: nmdc:wfmsa-99-qwertyuiop -name: Sequencing Activity for nmdc:mga0vx38 -part_of: null -started_at_time: '2021-08-05T14:48:51+00:00' -type: nmdc:MetagenomeSequencing -version: v1.0.0 -was_informed_by: gold:Gp0213371 - -``` -## Database-invalid-functional-annotations -### Input -```yaml -functional_annotation_set: -- has_function: KEGG_PATHWAY:XOXOXOXO -- has_function: KEGG_PATHWAY:iIiIiIiI - -``` -## DataObject-invalid-data_object_type -### Input -```yaml -alternative_identifiers: -- prefix:value1 -- prefix:value2 -compression_type: any string -data_object_type: undefined permissible value for `file type enum` -description: Crispr Terms for nmdc:ann0vx38 -file_size_bytes: 1234 -id: nmdc:dobj-11-dtTMNb -md5_checksum: 22afa3d49b73eaec2e9787a6b88fbdc3 -name: Crispr Terms -type: nmdc:DataObject -url: http://example.com -was_generated_by: nmdc:invalid_id - -``` -## Biosample-missing-id -### Input -```yaml -env_broad_scale: - has_raw_value: ENVO:00002030 - term: - id: ENVO:00002030 -env_local_scale: - has_raw_value: ENVO:00002169 - term: - id: ENVO:00002169 -env_medium: - has_raw_value: ENVO:00005792 - term: - id: ENVO:00005792 -part_of: -- gold:Gs0110115 - -``` -## MetagenomeSequencingActivity-bad_id -### Input -```yaml -ended_at_time: '2021-09-15T10:13:20+00:00' -execution_resource: JGI -git_url: '' -has_input: -- nmdc:unvalidated_placeholder -has_output: -- nmdc:22afa3d49b73eaec2e9787a6b88fbdc3 -id: nmdc:107ade35423143e39dc30b12832ac759 -name: Sequencing Activity for nmdc:mga0vx38 -part_of: -- nmdc:mga0vx38 -started_at_time: '2021-08-05T14:48:51+00:00' -type: nmdc:MetagenomeSequencing -version: v1.0.0 -was_informed_by: gold:Gp0213371 - -``` -## Biosample-invalid_fire -### Input -```yaml -env_broad_scale: - has_raw_value: ENVO:00002030 - term: - id: ENVO:00002030 -env_local_scale: - has_raw_value: ENVO:00002169 - term: - id: ENVO:00002169 -env_medium: - has_raw_value: ENVO:00005792 - term: - id: ENVO:00005792 -fire: like a volcano -id: nmdc:bsm-99-dtTMNb -part_of: -- gold:Gs0110115 - ``` ## Biosample-incomplete_napa_id ### Input @@ -2786,7 +2847,26 @@ specific_ecosystem: Coalbed water type: nmdc:Biosample ``` -## Database-biosample_single_multi_value_mixup +## Biosample-missing-id +### Input +```yaml +env_broad_scale: + has_raw_value: ENVO:00002030 + term: + id: ENVO:00002030 +env_local_scale: + has_raw_value: ENVO:00002169 + term: + id: ENVO:00002169 +env_medium: + has_raw_value: ENVO:00005792 + term: + id: ENVO:00005792 +part_of: +- gold:Gs0110115 + +``` +## Database-biosample_missing_required_field ### Input ```yaml biosample_set: @@ -2812,9 +2892,6 @@ biosample_set: geo_loc_name: has_raw_value: Lithgow habitat: Coalbed water - id: - - gold:Gb0101224 - - gold:Gb0101225 lat_lon: has_raw_value: -33.460524 150.168149 latitude: -33.460524 @@ -2823,13 +2900,9 @@ biosample_set: mod_date: 26-AUG-16 01.50.27.000000000 PM name: Lithgow State Coal Mine Calcium nutrients (early) ncbi_taxonomy_name: coal metagenome - part_of: - - gold:Gs0128849 sample_collection_site: Lithgow State Coal Mine specific_ecosystem: Coalbed water - type: - - nmdc:Biosample - - nmdc:FunctionalAnnotation + type: nmdc:Biosample - add_date: 28-JUL-14 12.00.00.000000000 AM community: microbial communities description: Bulk Aqueous phase filtered water @@ -2851,10 +2924,7 @@ biosample_set: id: ENVO:00005792 geo_loc_name: has_raw_value: Lithgow - gold_biosample_identifiers: - - gold:Gb0101225 habitat: Coalbed water - id: nmdc:e924072f-98b5-4f88-a796-a7ba1d8ddd92 lat_lon: has_raw_value: -33.460524 150.168149 latitude: -33.460524 @@ -2863,8 +2933,6 @@ biosample_set: mod_date: 26-AUG-16 01.50.27.000000000 PM name: Lithgow State Coal Mine Calcium nutrients Extra ncbi_taxonomy_name: coal metagenome - part_of: - - gold:Gs0128849 sample_collection_site: Lithgow State Coal Mine specific_ecosystem: Coalbed water type: nmdc:Biosample @@ -2889,10 +2957,7 @@ biosample_set: id: ENVO:00005792 geo_loc_name: has_raw_value: Lithgow - gold_biosample_identifiers: - - gold:Gb0101226 habitat: Coalbed water - id: nmdc:61c3332d-f654-4db8-8d2f-59475894daa5 lat_lon: has_raw_value: -33.460524 150.168149 latitude: -33.460524 @@ -2901,63 +2966,29 @@ biosample_set: mod_date: 26-AUG-16 01.50.27.000000000 PM name: Lithgow State Coal Mine Calcium nutrients ncbi_taxonomy_name: coal metagenome - part_of: - - gold:Gs0128849 sample_collection_site: Lithgow State Coal Mine specific_ecosystem: Coalbed water type: nmdc:Biosample ``` -## Database-invalid-studies +## MetagenomeSequencingActivity-bad_id ### Input ```yaml -study_set: -- baz: blah - description: Using analytical expertise at both the JGI and EMSL, we plan to follow - successional patterns of protein expression - doi: - has_raw_value: 10.25585/1487760 - ecosystem: Host-associated - ecosystem_category: Plants - ecosystem_subtype: Soil - ecosystem_type: Rhizosphere - foo: bar - id: gold:Gs0110115 - name: Avena fatua rhizosphere microbial communities from Hopland, California, USA, - for root-enhanced decomposition of organic matter studies - principal_investigator_name: - has_raw_value: Mary Firestone - specific_ecosystem: Unclassified - type: nmdc:Study -- description: We propose to utilize the unique resources at EMSL and the JGI to obtain - a better understanding of the phylogenetic and functional diversity of cyanobacteria - doi: - has_raw_value: 10.25585/1487758 - ecosystem: Host-associated - ecosystem_category: Microbial - ecosystem_subtype: Unclassified - ecosystem_type: Bacteria - id: gold:Gs0110132 - name: Cyanobacterial communities from the Joint Genome Institute, California, USA - principal_investigator_name: - has_raw_value: Matthias Hess - specific_ecosystem: Unclassified - type: nmdc:Study -- description: A fundamental challenge of microbial environmental science is to understand - how earth systems will respond to climate change - doi: - has_raw_value: 10.25585/1487764 - ecosystem: Environmental - ecosystem_category: Terrestrial - ecosystem_subtype: Wetlands - ecosystem_type: Soil - id: gold:Gs0112340 - name: Thawing permafrost microbial communities from the Arctic, studying carbon - transformations - principal_investigator_name: - has_raw_value: Virginia Rich - specific_ecosystem: Permafrost - type: nmdc:Study +ended_at_time: '2021-09-15T10:13:20+00:00' +execution_resource: JGI +git_url: '' +has_input: +- nmdc:unvalidated_placeholder +has_output: +- nmdc:22afa3d49b73eaec2e9787a6b88fbdc3 +id: nmdc:107ade35423143e39dc30b12832ac759 +name: Sequencing Activity for nmdc:mga0vx38 +part_of: +- nmdc:mga0vx38 +started_at_time: '2021-08-05T14:48:51+00:00' +type: nmdc:MetagenomeSequencing +version: v1.0.0 +was_informed_by: gold:Gp0213371 ``` ## Database-biosample_undeclared_slot @@ -3081,3 +3112,29 @@ biosample_set: type: nmdc:Biosample ``` +## Database-invalid-functional-annotations +### Input +```yaml +functional_annotation_set: +- has_function: KEGG_PATHWAY:XOXOXOXO +- has_function: KEGG_PATHWAY:iIiIiIiI + +``` +## DataObject-invalid-data_object_type +### Input +```yaml +alternative_identifiers: +- prefix:value1 +- prefix:value2 +compression_type: any string +data_object_type: undefined permissible value for `file type enum` +description: Crispr Terms for nmdc:ann0vx38 +file_size_bytes: 1234 +id: nmdc:dobj-11-dtTMNb +md5_checksum: 22afa3d49b73eaec2e9787a6b88fbdc3 +name: Crispr Terms +type: nmdc:DataObject +url: http://example.com +was_generated_by: nmdc:invalid_id + +``` diff --git a/src/data/output/Study-exhaustive.ttl b/src/data/output/Study-exhaustive.ttl index f789f2935f..a5505956bd 100644 --- a/src/data/output/Study-exhaustive.ttl +++ b/src/data/output/Study-exhaustive.ttl @@ -67,16 +67,16 @@ nmdc:sty-11-ab a nmdc:Study ; "any string 2" ; nmdc:specific_ecosystem "unconstrained text" ; nmdc:study_image [ a nmdc:ImageValue ; - dcterms:description "Photo of Craig Venter Institute, La Jolla, California" ; - nmdc:display_order "2" ; - nmdc:has_raw_value "https://today.ucsd.edu/news_uploads/140213ventor2.jpg" ; - nmdc:url "https://today.ucsd.edu/news_uploads/140213ventor2.jpg" ; - nmdc:was_generated_by nmdc:any_string_1 ], - [ a nmdc:ImageValue ; dcterms:description "Photo of Craig Venter Institute, Rockville, Maryland" ; nmdc:display_order "1" ; nmdc:has_raw_value "https://upload.wikimedia.org/wikipedia/commons/8/86/J._Craig_Vernter_Institute_Rockville_Maryland.jpg" ; nmdc:url "https://upload.wikimedia.org/wikipedia/commons/8/86/J._Craig_Vernter_Institute_Rockville_Maryland.jpg" ; + nmdc:was_generated_by nmdc:any_string_1 ], + [ a nmdc:ImageValue ; + dcterms:description "Photo of Craig Venter Institute, La Jolla, California" ; + nmdc:display_order "2" ; + nmdc:has_raw_value "https://today.ucsd.edu/news_uploads/140213ventor2.jpg" ; + nmdc:url "https://today.ucsd.edu/news_uploads/140213ventor2.jpg" ; nmdc:was_generated_by nmdc:any_string_1 ] ; nmdc:title "Sample Exhaustive Biosample instance. Although all of these values should pass validation, that does not mean that any Biosample of any type would necessarily have this particular combination of values." ; nmdc:type "any string" ; diff --git a/src/schema/mixs.yaml b/src/schema/mixs.yaml index 834225a406..fc1ad2ecbe 100644 --- a/src/schema/mixs.yaml +++ b/src/schema/mixs.yaml @@ -4,7 +4,7 @@ notes: - removed several MIxS terms/slots that were sharing slot uris; commented out Biosample assignments - note that the NMDC submission schema in sheets_and_friends takes its MIxS terms from https://raw.githubusercontent.com/GenomicsStandardsConsortium/mixs/main/model/schema/mixs.yaml and then potentially modifies them. Ideally this file would contain MIxS terms, essentially ready-to-use - yet another source of MIxS terms is the incomplete https://github.com/GenomicsStandardsConsortium/mixs/tree/issue-511-tested-schemasheets -id: https://microbiomedata/schema/mixs +id: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml imports: - basic_slots prefixes: @@ -32,153 +32,44 @@ subsets: description: A combination of a checklist and a package from_schema: http://w3id.org/mixs/terms enums: - drawings_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - operation: {} - as built: {} - construction: {} - bid: {} - design: {} - building navigation map: {} - diagram: {} - sketch: {} - ceil_cond_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - new: {} - visible wear: {} - needs repair: {} - damaged: {} - rupture: {} - plant_growth_med_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - other artificial liquid medium: {} - other artificial solid medium: {} - peat moss: {} - perlite: {} - pumice: {} - sand: {} - soil: {} - vermiculite: {} - water: {} - door_mat_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - aluminum: {} - cellular PVC: {} - engineered plastic: {} - fiberboard: {} - fiberglass: {} - metal: {} - thermoplastic alloy: {} - vinyl: {} - wood: {} - wood/plastic composite: {} - handidness_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - ambidexterity: {} - left handedness: {} - mixed-handedness: {} - right handedness: {} - ceil_finish_mat_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - drywall: {} - mineral fibre: {} - tiles: {} - PVC: {} - plasterboard: {} - metal: {} - fiberglass: {} - stucco: {} - mineral wool/calcium silicate: {} - wood: {} - indoor_space_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - bedroom: {} - office: {} - bathroom: {} - foyer: {} - kitchen: {} - locker room: {} - hallway: {} - elevator: {} - season_use_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - Spring: {} - Summer: {} - Fall: {} - Winter: {} - floor_struc_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - balcony: {} - floating floor: {} - glass floor: {} - raised floor: {} - sprung floor: {} - wood-framed: {} - concrete: {} - ceil_type_enum: + occup_document_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - cathedral: {} - dropped: {} - concave: {} - barrel-shaped: {} - coffered: {} - cove: {} - stretched: {} - ceil_texture_enum: + automated count: {} + estimate: {} + manual count: {} + videos: {} + sediment_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - crows feet: {} - crows-foot stomp: {} - double skip: {} - hawk and trowel: {} - knockdown: {} - popcorn: {} - orange peel: {} - rosebud stomp: {} - Santa-Fe texture: {} - skip trowel: {} - smooth: {} - stomp knockdown: {} - swirl: {} - profile_position_enum: + biogenous: {} + cosmogenous: {} + hydrogenous: {} + lithogenous: {} + ext_wall_orient_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - summit: {} - shoulder: {} - backslope: {} - footslope: {} - toeslope: {} - tidal_stage_enum: + north: {} + south: {} + east: {} + west: {} + northeast: {} + southeast: {} + southwest: {} + northwest: {} + train_line_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - low tide: {} - ebb tide: {} - flood tide: {} - high tide: {} - wall_finish_mat_enum: + red: {} + green: {} + orange: {} + building_setting_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - plaster: {} - gypsum plaster: {} - veneer plaster: {} - gypsum board: {} - tile: {} - terrazzo: {} - stone facing: {} - acoustical treatment: {} - wood: {} - metal: {} - masonry: {} + urban: {} + suburban: {} + exurban: {} + rural: {} room_samp_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -191,92 +82,21 @@ enums: southeast corner: {} southwest corner: {} center: {} - room_connected_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - attic: {} - bathroom: {} - closet: {} - conference room: {} - elevator: {} - examining room: {} - hallway: {} - kitchen: {} - mail room: {} - office: {} - stairwell: {} - building_setting_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - urban: {} - suburban: {} - exurban: {} - rural: {} - sediment_type_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - biogenous: {} - cosmogenous: {} - hydrogenous: {} - lithogenous: {} - floor_water_mold_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - mold odor: {} - wet floor: {} - water stains: {} - wall discoloration: {} - floor discoloration: {} - ceiling discoloration: {} - peeling paint or wallpaper: {} - bulging walls: {} - condensation: {} - hc_produced_enum: + wall_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Oil: {} - Gas-Condensate: {} - Gas: {} - Bitumen: {} - Coalbed Methane: {} - other: {} - sr_dep_env_enum: + north: {} + south: {} + east: {} + west: {} + samp_md_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Lacustine: {} - Fluvioldeltaic: {} - Fluviomarine: {} - Marine: {} + DF: {} + RT: {} + KB: {} + MSL: {} other: {} - train_stat_loc_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - south station above ground: {} - south station underground: {} - south station amtrak: {} - forest hills: {} - riverside: {} - door_direct_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - inward: {} - outward: {} - sideways: {} - drainage_class_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - very poorly: {} - poorly: {} - somewhat poorly: {} - moderately well: {} - well: {} - excessively drained: {} - arch_struc_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - building: {} - shed: {} - home: {} cur_land_use_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -315,15 +135,53 @@ enums: rainforest (evergreen forest receiving greater than 406 cm annual rainfall): {} swamp (permanent or semi-permanent water body dominated by woody plants): {} crop trees (nuts,fruit,christmas trees,nursery trees): {} - gender_restroom_enum: + train_stat_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - all gender: {} - female: {} - gender neurtral: {} - male: {} - male and female: {} - unisex: {} + south station above ground: {} + south station underground: {} + south station amtrak: {} + forest hills: {} + riverside: {} + door_direct_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + inward: {} + outward: {} + sideways: {} + floor_water_mold_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + mold odor: {} + wet floor: {} + water stains: {} + wall discoloration: {} + floor discoloration: {} + ceiling discoloration: {} + peeling paint or wallpaper: {} + bulging walls: {} + condensation: {} + hcr_geol_age_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + Archean: {} + Cambrian: {} + Carboniferous: {} + Cenozoic: {} + Cretaceous: {} + Devonian: {} + Jurassic: {} + Mesozoic: {} + Neogene: {} + Ordovician: {} + Paleogene: {} + Paleozoic: {} + Permian: {} + Precambrian: {} + Proterozoic: {} + Silurian: {} + Triassic: {} + other: {} surf_air_cont_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -335,135 +193,132 @@ enums: radon: {} nutrients: {} biocides: {} - shading_device_type_enum: + drawings_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - bahama shutters: {} - exterior roll blind: {} - gambrel awning: {} - hood awning: {} - porchroller awning: {} - sarasota shutters: {} - slatted aluminum: {} - solid aluminum awning: {} - sun screen: {} - tree: {} - trellis: {} - venetian awning: {} - samp_floor_enum: + operation: {} + as built: {} + construction: {} + bid: {} + design: {} + building navigation map: {} + diagram: {} + sketch: {} + door_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - 1st floor: {} - 2nd floor: {} - basement: {} - lobby: {} - rel_samp_loc_enum: + north: {} + south: {} + east: {} + west: {} + sr_dep_env_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - edge of car: {} - center of car: {} - under a seat: {} - window_horiz_pos_enum: + Lacustine: {} + Fluvioldeltaic: {} + Fluviomarine: {} + Marine: {} + other: {} + room_condt_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - left: {} - middle: {} - right: {} - fao_class_enum: + new: {} + visible wear: {} + needs repair: {} + damaged: {} + rupture: {} + visible signs of mold/mildew: {} + samp_dis_stage_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Acrisols: {} - Andosols: {} - Arenosols: {} - Cambisols: {} - Chernozems: {} - Ferralsols: {} - Fluvisols: {} - Gleysols: {} - Greyzems: {} - Gypsisols: {} - Histosols: {} - Kastanozems: {} - Lithosols: {} - Luvisols: {} - Nitosols: {} - Phaeozems: {} - Planosols: {} - Podzols: {} - Podzoluvisols: {} - Rankers: {} - Regosols: {} - Rendzinas: {} - Solonchaks: {} - Solonetz: {} - Vertisols: {} - Yermosols: {} - wall_const_type_enum: + dissemination: {} + growth and reproduction: {} + infection: {} + inoculation: {} + penetration: {} + other: {} + quad_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - frame construction: {} - joisted masonry: {} - light noncombustible: {} - masonry noncombustible: {} - modified fire resistive: {} - fire resistive: {} - furniture_enum: + North side: {} + West side: {} + South side: {} + East side: {} + samp_floor_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - cabinet: {} - chair: {} - desks: {} - host_sex_enum: + 1st floor: {} + 2nd floor: {} + basement: {} + lobby: {} + handidness_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - female: {} - hermaphrodite: {} - male: {} - neuter: {} - rel_to_oxygen_enum: + ambidexterity: {} + left handedness: {} + mixed-handedness: {} + right handedness: {} + profile_position_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - aerobe: {} - anaerobe: {} - facultative: {} - microaerophilic: {} - microanaerobe: {} - obligate aerobe: {} - obligate anaerobe: {} - room_loc_enum: + summit: {} + shoulder: {} + backslope: {} + footslope: {} + toeslope: {} + vis_media_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - corner room: {} - interior room: {} - exterior wall: {} - wall_loc_enum: + photos: {} + videos: {} + commonly of the building: {} + site context (adjacent buildings, vegetation, terrain, streets): {} + interiors: {} + equipment: {} + 3D scans: {} + substructure_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} - shading_device_cond_enum: + crawlspace: {} + slab on grade: {} + basement: {} + lithology_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - damaged: {} - needs repair: {} - new: {} - rupture: {} - visible wear: {} - mech_struc_enum: + Basement: {} + Chalk: {} + Chert: {} + Coal: {} + Conglomerate: {} + Diatomite: {} + Dolomite: {} + Limestone: {} + Sandstone: {} + Shale: {} + Siltstone: {} + Volcanic: {} + other: {} + arch_struc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - subway: {} - coach: {} - carriage: {} - elevator: {} - escalator: {} - boat: {} - train: {} - car: {} - bus: {} - int_wall_cond_enum: + building: {} + shed: {} + home: {} + door_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + composite: {} + metal: {} + wooden: {} + sr_kerog_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + Type I: {} + Type II: {} + Type III: {} + Type IV: {} + other: {} + ceil_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: new: {} @@ -471,67 +326,16 @@ enums: needs repair: {} damaged: {} rupture: {} - organism_count_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - ATP: {} - MPN: {} - other: {} - sr_lithology_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - Clastic: {} - Carbonate: {} - Coal: {} - Biosilicieous: {} - other: {} - window_cover_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - blinds: {} - curtains: {} - none: {} - indoor_surf_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - cabinet: {} - ceiling: {} - counter top: {} - door: {} - shelving: {} - vent cover: {} - window: {} - wall: {} - samp_subtype_enum: + samp_collect_point_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - oil phase: {} - water phase: {} - biofilm: {} - not applicable: {} + well: {} + test well: {} + drilling rig: {} + wellhead: {} + separator: {} + storage tank: {} other: {} - build_occup_type_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - office: {} - market: {} - restaurant: {} - residence: {} - school: {} - residential: {} - commercial: {} - low rise: {} - high rise: {} - wood framed: {} - health care: {} - airport: {} - sports complex: {} - door_type_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - composite: {} - metal: {} - wooden: {} window_vert_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -540,6 +344,20 @@ enums: top: {} low: {} high: {} + train_stop_loc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + end: {} + mid: {} + downtown: {} + int_wall_cond_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + new: {} + visible wear: {} + needs repair: {} + damaged: {} + rupture: {} plant_sex_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -572,128 +390,150 @@ enums: Trimonoecious: {} Trioecious: {} Unisexual: {} - soil_horizon_enum: + rel_samp_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - O horizon: {} - A horizon: {} - E horizon: {} - B horizon: {} - C horizon: {} - R layer: {} - Permafrost: {} - room_condt_enum: + edge of car: {} + center of car: {} + under a seat: {} + tidal_stage_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - new: {} - visible wear: {} - needs repair: {} - damaged: {} - rupture: {} - visible signs of mold/mildew: {} - lithology_enum: + low tide: {} + ebb tide: {} + flood tide: {} + high tide: {} + samp_capt_status_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Basement: {} - Chalk: {} - Chert: {} - Coal: {} - Conglomerate: {} - Diatomite: {} - Dolomite: {} - Limestone: {} - Sandstone: {} - Shale: {} - Siltstone: {} - Volcanic: {} + active surveillance in response to an outbreak: {} + active surveillance not initiated by an outbreak: {} + farm sample: {} + market sample: {} other: {} - ext_window_orient_enum: + sr_lithology_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} - northeast: {} - southeast: {} - southwest: {} - northwest: {} - filter_type_enum: + Clastic: {} + Carbonate: {} + Coal: {} + Biosilicieous: {} + other: {} + depos_env_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - particulate air filter: {} - chemical air filter: {} - low-MERV pleated media: {} - HEPA: {} - electrostatic: {} - gas-phase or ultraviolet air treatments: {} - window_loc_enum: + Continental - Alluvial: {} + Continental - Aeolian: {} + Continental - Fluvial: {} + Continental - Lacustrine: {} + Transitional - Deltaic: {} + Transitional - Tidal: {} + Transitional - Lagoonal: {} + Transitional - Beach: {} + Transitional - Lake: {} + Marine - Shallow: {} + Marine - Deep: {} + Marine - Reef: {} + Other - Evaporite: {} + Other - Glacial: {} + Other - Volcanic: {} + other: {} + sr_geol_age_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} - samp_weather_enum: + Archean: {} + Cambrian: {} + Carboniferous: {} + Cenozoic: {} + Cretaceous: {} + Devonian: {} + Jurassic: {} + Mesozoic: {} + Neogene: {} + Ordovician: {} + Paleogene: {} + Paleozoic: {} + Permian: {} + Precambrian: {} + Proterozoic: {} + Silurian: {} + Triassic: {} + other: {} + hcr_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - clear sky: {} - cloudy: {} - foggy: {} - hail: {} - rain: {} - snow: {} - sleet: {} - sunny: {} - windy: {} - samp_collect_point_enum: + Oil Reservoir: {} + Gas Reservoir: {} + Oil Sand: {} + Coalbed: {} + Shale: {} + Tight Oil Reservoir: {} + Tight Gas Reservoir: {} + other: {} + room_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - well: {} - test well: {} - drilling rig: {} - wellhead: {} - separator: {} - storage tank: {} - other: {} - tillage_enum: + corner room: {} + interior room: {} + exterior wall: {} + room_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - drill: {} - cutting disc: {} - ridge till: {} - strip tillage: {} - zonal tillage: {} - chisel: {} - tined: {} - mouldboard: {} - disc plough: {} - surf_material_enum: + attic: {} + bathroom: {} + closet: {} + conference room: {} + elevator: {} + examining room: {} + hallway: {} + kitchen: {} + mail room: {} + private office: {} + open office: {} + stairwell: {} + ',restroom': {} + lobby: {} + vestibule: {} + mechanical or electrical room: {} + data center: {} + laboratory_wet: {} + laboratory_dry: {} + gymnasium: {} + natatorium: {} + auditorium: {} + lockers: {} + cafe: {} + warehouse: {} + growth_habit_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - adobe: {} - carpet: {} - cinder blocks: {} - concrete: {} - hay bales: {} - glass: {} - metal: {} - paint: {} - plastic: {} - stainless steel: {} - stone: {} - stucco: {} - tile: {} - vinyl: {} - wood: {} - water_feat_type_enum: + erect: {} + semi-erect: {} + spreading: {} + prostrate: {} + door_comp_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - fountain: {} - pool: {} - standing feature: {} - stream: {} - waterfall: {} + metal covered: {} + revolving: {} + sliding: {} + telescopic: {} + floor_struc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + balcony: {} + floating floor: {} + glass floor: {} + raised floor: {} + sprung floor: {} + wood-framed: {} + concrete: {} + window_cover_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + blinds: {} + curtains: {} + none: {} freq_clean_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -703,131 +543,140 @@ enums: Quarterly: {} Annually: {} other: {} - heat_deliv_loc_enum: + wall_texture_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} - train_line_enum: + crows feet: {} + crows-foot stomp: {} + '': {} + double skip: {} + hawk and trowel: {} + knockdown: {} + popcorn: {} + orange peel: {} + rosebud stomp: {} + Santa-Fe texture: {} + skip trowel: {} + smooth: {} + stomp knockdown: {} + swirl: {} + window_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - red: {} - green: {} - orange: {} - specific_enum: + clad: {} + fiberglass: {} + metal: {} + vinyl: {} + wood: {} + light_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - operation: {} - as built: {} - construction: {} - bid: {} - design: {} - photos: {} - window_cond_enum: + natural light: {} + electric light: {} + desk lamp: {} + flourescent lights: {} + none: {} + season_use_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - damaged: {} - needs repair: {} - new: {} - rupture: {} - visible wear: {} - ext_wall_orient_enum: + Spring: {} + Summer: {} + Fall: {} + Winter: {} + soil_horizon_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} - northeast: {} - southeast: {} - southwest: {} - northwest: {} - vis_media_enum: + O horizon: {} + A horizon: {} + E horizon: {} + B horizon: {} + C horizon: {} + R layer: {} + Permafrost: {} + wall_const_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - photos: {} - videos: {} - commonly of the building: {} - site context (adjacent buildings, vegetation, terrain, streets): {} - interiors: {} - equipment: {} - 3D scans: {} - samp_dis_stage_enum: + frame construction: {} + joisted masonry: {} + light noncombustible: {} + masonry noncombustible: {} + modified fire resistive: {} + fire resistive: {} + shading_device_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - dissemination: {} - growth and reproduction: {} - infection: {} - inoculation: {} - penetration: {} - other: {} - hcr_geol_age_enum: + bahama shutters: {} + exterior roll blind: {} + gambrel awning: {} + hood awning: {} + porchroller awning: {} + sarasota shutters: {} + slatted aluminum: {} + solid aluminum awning: {} + sun screen: {} + tree: {} + trellis: {} + venetian awning: {} + wall_finish_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Archean: {} - Cambrian: {} - Carboniferous: {} - Cenozoic: {} - Cretaceous: {} - Devonian: {} - Jurassic: {} - Mesozoic: {} - Neogene: {} - Ordovician: {} - Paleogene: {} - Paleozoic: {} - Permian: {} - Precambrian: {} - Proterozoic: {} - Silurian: {} - Triassic: {} - other: {} - sr_geol_age_enum: + plaster: {} + gypsum plaster: {} + veneer plaster: {} + gypsum board: {} + tile: {} + terrazzo: {} + stone facing: {} + acoustical treatment: {} + wood: {} + metal: {} + masonry: {} + water_feat_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Archean: {} - Cambrian: {} - Carboniferous: {} - Cenozoic: {} - Cretaceous: {} - Devonian: {} - Jurassic: {} - Mesozoic: {} - Neogene: {} - Ordovician: {} - Paleogene: {} - Paleozoic: {} - Permian: {} - Precambrian: {} - Proterozoic: {} - Silurian: {} - Triassic: {} - other: {} - light_type_enum: + fountain: {} + pool: {} + standing feature: {} + stream: {} + waterfall: {} + filter_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - natural light: {} - electric light: {} - desk lamp: {} - flourescent lights: {} - none: {} - door_comp_type_enum: + particulate air filter: {} + chemical air filter: {} + low-MERV pleated media: {} + HEPA: {} + electrostatic: {} + gas-phase or ultraviolet air treatments: {} + tillage_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - metal covered: {} - revolving: {} - sliding: {} - telescopic: {} - sr_kerog_type_enum: + drill: {} + cutting disc: {} + ridge till: {} + strip tillage: {} + zonal tillage: {} + chisel: {} + tined: {} + mouldboard: {} + disc plough: {} + wall_surf_treatment_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Type I: {} - Type II: {} - Type III: {} - Type IV: {} - other: {} + painted: {} + wall paper: {} + no treatment: {} + paneling: {} + stucco: {} + fabric: {} + floor_cond_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + new: {} + visible wear: {} + needs repair: {} + damaged: {} + rupture: {} weekday_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -838,68 +687,63 @@ enums: Friday: {} Saturday: {} Sunday: {} - heat_cool_type_enum: + window_horiz_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - radiant system: {} - heat pump: {} - forced air system: {} - steam forced heat: {} - wood stove: {} - quad_pos_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - North side: {} - West side: {} - South side: {} - East side: {} - biotic_relationship_enum: + left: {} + middle: {} + right: {} + window_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - free living: {} - parasite: {} - commensal: {} - symbiont: {} - occup_document_enum: + single-hung sash window: {} + horizontal sash window: {} + fixed window: {} + mech_struc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - automated count: {} - estimate: {} - manual count: {} - videos: {} - train_stop_loc_enum: + subway: {} + coach: {} + carriage: {} + elevator: {} + escalator: {} + boat: {} + train: {} + car: {} + bus: {} + surf_material_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - end: {} - mid: {} - downtown: {} - hcr_enum: + adobe: {} + carpet: {} + cinder blocks: {} + concrete: {} + hay bales: {} + glass: {} + metal: {} + paint: {} + plastic: {} + stainless steel: {} + stone: {} + stucco: {} + tile: {} + vinyl: {} + wood: {} + door_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Oil Reservoir: {} - Gas Reservoir: {} - Oil Sand: {} - Coalbed: {} - Shale: {} - Tight Oil Reservoir: {} - Tight Gas Reservoir: {} - other: {} - build_docs_enum: + damaged: {} + needs repair: {} + new: {} + rupture: {} + visible wear: {} + biotic_relationship_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - building information model: {} - commissioning report: {} - complaint logs: {} - contract administration: {} - cost estimate: {} - janitorial schedules or logs: {} - maintenance plans: {} - schedule: {} - sections: {} - shop drawings: {} - submittals: {} - ventilation system: {} - windows: {} + free living: {} + parasite: {} + commensal: {} + symbiont: {} door_move_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -909,29 +753,73 @@ enums: rolling shutter: {} sliding: {} swinging: {} - substructure_type_enum: + indoor_space_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - crawlspace: {} - slab on grade: {} - basement: {} - wall_surf_treatment_enum: + bedroom: {} + office: {} + bathroom: {} + foyer: {} + kitchen: {} + locker room: {} + hallway: {} + elevator: {} + indoor_surf_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - painted: {} - wall paper: {} - no treatment: {} - paneling: {} - stucco: {} - fabric: {} - growth_habit_enum: + cabinet: {} + ceiling: {} + counter top: {} + door: {} + shelving: {} + vent cover: {} + window: {} + wall: {} + ceil_texture_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - erect: {} - semi-erect: {} - spreading: {} - prostrate: {} - room_type_enum: + crows feet: {} + crows-foot stomp: {} + double skip: {} + hawk and trowel: {} + knockdown: {} + popcorn: {} + orange peel: {} + rosebud stomp: {} + Santa-Fe texture: {} + skip trowel: {} + smooth: {} + stomp knockdown: {} + swirl: {} + biol_stat_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + wild: {} + natural: {} + semi-natural: {} + inbred line: {} + breeder's line: {} + hybrid: {} + clonal selection: {} + mutant: {} + window_cond_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + damaged: {} + needs repair: {} + new: {} + rupture: {} + visible wear: {} + hc_produced_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + Oil: {} + Gas-Condensate: {} + Gas: {} + Bitumen: {} + Coalbed Methane: {} + other: {} + room_connected_enum: from_schema: http://w3id.org/mixs/terms permissible_values: attic: {} @@ -943,84 +831,253 @@ enums: hallway: {} kitchen: {} mail room: {} - private office: {} - open office: {} + office: {} stairwell: {} - ',restroom': {} - lobby: {} - vestibule: {} - mechanical or electrical room: {} - data center: {} - laboratory_wet: {} - laboratory_dry: {} - gymnasium: {} - natatorium: {} - auditorium: {} - lockers: {} - cafe: {} - warehouse: {} - window_type_enum: + door_type_metal_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - single-hung sash window: {} - horizontal sash window: {} - fixed window: {} - wall_texture_enum: + collapsible: {} + corrugated steel: {} + hollow: {} + rolling shutters: {} + steel plate: {} + door_type_wood_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + bettened and ledged: {} + battened: {} + ledged and braced: {} + ledged and framed: {} + ledged, braced and frame: {} + framed and paneled: {} + glashed or sash: {} + flush: {} + louvered: {} + wire gauged: {} + drainage_class_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + very poorly: {} + poorly: {} + somewhat poorly: {} + moderately well: {} + well: {} + excessively drained: {} + rel_to_oxygen_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + aerobe: {} + anaerobe: {} + facultative: {} + microaerophilic: {} + microanaerobe: {} + obligate aerobe: {} + obligate anaerobe: {} + host_sex_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + female: {} + hermaphrodite: {} + male: {} + neuter: {} + fao_class_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + Acrisols: {} + Andosols: {} + Arenosols: {} + Cambisols: {} + Chernozems: {} + Ferralsols: {} + Fluvisols: {} + Gleysols: {} + Greyzems: {} + Gypsisols: {} + Histosols: {} + Kastanozems: {} + Lithosols: {} + Luvisols: {} + Nitosols: {} + Phaeozems: {} + Planosols: {} + Podzols: {} + Podzoluvisols: {} + Rankers: {} + Regosols: {} + Rendzinas: {} + Solonchaks: {} + Solonetz: {} + Vertisols: {} + Yermosols: {} + specific_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + operation: {} + as built: {} + construction: {} + bid: {} + design: {} + photos: {} + plant_growth_med_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + other artificial liquid medium: {} + other artificial solid medium: {} + peat moss: {} + perlite: {} + pumice: {} + sand: {} + soil: {} + vermiculite: {} + water: {} + oxy_stat_samp_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - crows feet: {} - crows-foot stomp: {} - '': {} - double skip: {} - hawk and trowel: {} - knockdown: {} - popcorn: {} - orange peel: {} - rosebud stomp: {} - Santa-Fe texture: {} - skip trowel: {} - smooth: {} - stomp knockdown: {} - swirl: {} - door_type_metal_enum: + aerobic: {} + anaerobic: {} + other: {} + window_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - collapsible: {} - corrugated steel: {} - hollow: {} - rolling shutters: {} - steel plate: {} - floor_cond_enum: + north: {} + south: {} + east: {} + west: {} + shading_device_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - new: {} - visible wear: {} - needs repair: {} damaged: {} + needs repair: {} + new: {} rupture: {} - door_loc_enum: + visible wear: {} + organism_count_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + ATP: {} + MPN: {} + other: {} + build_docs_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + building information model: {} + commissioning report: {} + complaint logs: {} + contract administration: {} + cost estimate: {} + janitorial schedules or logs: {} + maintenance plans: {} + schedule: {} + sections: {} + shop drawings: {} + submittals: {} + ventilation system: {} + windows: {} + samp_weather_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + clear sky: {} + cloudy: {} + foggy: {} + hail: {} + rain: {} + snow: {} + sleet: {} + sunny: {} + windy: {} + ext_window_orient_enum: from_schema: http://w3id.org/mixs/terms permissible_values: north: {} south: {} east: {} west: {} - window_mat_enum: + northeast: {} + southeast: {} + southwest: {} + northwest: {} + furniture_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - clad: {} + cabinet: {} + chair: {} + desks: {} + gender_restroom_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + all gender: {} + female: {} + gender neurtral: {} + male: {} + male and female: {} + unisex: {} + build_occup_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + office: {} + market: {} + restaurant: {} + residence: {} + school: {} + residential: {} + commercial: {} + low rise: {} + high rise: {} + wood framed: {} + health care: {} + airport: {} + sports complex: {} + ceil_finish_mat_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + drywall: {} + mineral fibre: {} + tiles: {} + PVC: {} + plasterboard: {} + metal: {} + fiberglass: {} + stucco: {} + mineral wool/calcium silicate: {} + wood: {} + heat_cool_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + radiant system: {} + heat pump: {} + forced air system: {} + steam forced heat: {} + wood stove: {} + door_mat_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + aluminum: {} + cellular PVC: {} + engineered plastic: {} + fiberboard: {} fiberglass: {} metal: {} + thermoplastic alloy: {} vinyl: {} wood: {} - door_cond_enum: + wood/plastic composite: {} + ceil_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - damaged: {} - needs repair: {} - new: {} - rupture: {} - visible wear: {} + cathedral: {} + dropped: {} + concave: {} + barrel-shaped: {} + coffered: {} + cove: {} + stretched: {} + heat_deliv_loc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + north: {} + south: {} + east: {} + west: {} floor_finish_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -1042,70 +1099,13 @@ enums: clear finish: {} paint: {} none or unfinished: {} - oxy_stat_samp_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - aerobic: {} - anaerobic: {} - other: {} - samp_capt_status_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - active surveillance in response to an outbreak: {} - active surveillance not initiated by an outbreak: {} - farm sample: {} - market sample: {} - other: {} - door_type_wood_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - bettened and ledged: {} - battened: {} - ledged and braced: {} - ledged and framed: {} - ledged, braced and frame: {} - framed and paneled: {} - glashed or sash: {} - flush: {} - louvered: {} - wire gauged: {} - biol_stat_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - wild: {} - natural: {} - semi-natural: {} - inbred line: {} - breeder's line: {} - hybrid: {} - clonal selection: {} - mutant: {} - depos_env_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - Continental - Alluvial: {} - Continental - Aeolian: {} - Continental - Fluvial: {} - Continental - Lacustrine: {} - Transitional - Deltaic: {} - Transitional - Tidal: {} - Transitional - Lagoonal: {} - Transitional - Beach: {} - Transitional - Lake: {} - Marine - Shallow: {} - Marine - Deep: {} - Marine - Reef: {} - Other - Evaporite: {} - Other - Glacial: {} - Other - Volcanic: {} - other: {} - samp_md_enum: + samp_subtype_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - DF: {} - RT: {} - KB: {} - MSL: {} + oil phase: {} + water phase: {} + biofilm: {} + not applicable: {} other: {} slots: abs_air_humidity: @@ -11154,17 +11154,6 @@ slots: from_schema: http://w3id.org/mixs/ranges string_serialization: '{has numeric value} {has unit}' owner: QuantityValue - sequencing field: - from_schema: http://w3id.org/mixs/terms - abstract: true - environment field: - description: field describing environmental aspect of a sample - from_schema: http://w3id.org/mixs/terms - abstract: true - has numeric value: - from_schema: http://w3id.org/mixs/ranges - owner: QuantityValue - range: double investigation field: description: field describing aspect of the investigation/study to which the sample belongs from_schema: http://w3id.org/mixs/terms @@ -11173,10 +11162,21 @@ slots: description: Example "m" from_schema: http://w3id.org/mixs/ranges owner: QuantityValue + sequencing field: + from_schema: http://w3id.org/mixs/terms + abstract: true core field: description: basic fields from_schema: http://w3id.org/mixs/terms abstract: true + has numeric value: + from_schema: http://w3id.org/mixs/ranges + owner: QuantityValue + range: double + environment field: + description: field describing environmental aspect of a sample + from_schema: http://w3id.org/mixs/terms + abstract: true nucleic acid sequence source field: from_schema: http://w3id.org/mixs/terms abstract: true