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regen
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turbomam committed Mar 5, 2023
1 parent db3c760 commit 5a577ca
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Showing 20 changed files with 16,473 additions and 16,307 deletions.
3,036 changes: 1,518 additions & 1,518 deletions assets/mixs_regen/mixs_subset.yaml

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72 changes: 36 additions & 36 deletions assets/mixs_regen/slots_associated_with_biosample.tsv
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
abs_air_humidity
add_date
additional_info
add_recov_method
additional_info
address
adj_room
aero_struc
Expand All @@ -10,11 +10,11 @@ air_PM_concen
air_temp
air_temp_regm
air_temp_regm
al_sat
al_sat_meth
alkalinity
alkalinity_method
alkyl_diethers
al_sat
al_sat_meth
alt
alternative_identifiers
aminopept_act
Expand Down Expand Up @@ -58,8 +58,8 @@ blood_press_diast
blood_press_syst
bromide
build_docs
building_setting
build_occup_type
building_setting
built_struc_age
built_struc_set
built_struc_type
Expand All @@ -78,8 +78,8 @@ ceil_water_mold
chem_administration
chem_mutagen
chem_oxygen_dem
chem_treatment
chem_treat_method
chem_treatment
chimera_check
chloride
chlorophyll
Expand Down Expand Up @@ -119,10 +119,10 @@ dna_absorb1
dna_absorb2
dna_collect_site
dna_concentration
dna_container_id
dna_cont_type
dna_cont_well
dna_cont_well
dna_container_id
dna_dnase
dna_isolate_meth
dna_organisms
Expand All @@ -133,8 +133,8 @@ dna_sample_name
dna_seq_project
dna_seq_project_name
dna_seq_project_pi
dnase_rna
dna_volume
dnase_rna
door_comp_type
door_cond
door_direct
Expand Down Expand Up @@ -164,21 +164,21 @@ embargoed
emsl_biosample_identifiers
emulsions
env_broad_scale
environment field
env_local_scale
env_medium
env_package
environment field
escalator
ethylbenzene
exp_duct
exp_pipe
experimental_factor
experimental_factor
experimental_factor_other
exp_pipe
ext_door
extreme_event
ext_wall_orient
ext_window_orient
extreme_event
fao_class
fertilizer_regm
field
Expand Down Expand Up @@ -282,10 +282,10 @@ iw_bt_date_well
iwf
last_clean
lat_lon
lbceq
lbceq
lbc_thirty
lbc_thirty
lbceq
lbceq
light_intensity
light_regm
light_regm
Expand All @@ -303,15 +303,15 @@ manganese
max_occup
mean_frict_vel
mean_peak_frict_vel
mechanical_damage
mech_struc
mechanical_damage
methane
microbial_biomass
microbial_biomass_c
microbial_biomass_n
micro_biomass_c_meth
micro_biomass_meth
micro_biomass_n_meth
microbial_biomass
microbial_biomass_c
microbial_biomass_n
mineral_nutr_regm
misc_param
mod_date
Expand All @@ -336,35 +336,35 @@ number_resident
occup_density_samp
occup_document
occup_samp
organism_count
org_carb
org_count_qpcr_info
org_matter
org_nitro
org_nitro_method
org_particles
organism_count
other_treatment
owc_tvdss
oxygen
oxy_stat_samp
particle_class
oxygen
part_of
part_org_carb
part_org_nitro
particle_class
pcr_cond
pcr_primers
permeability
perturbation
pesticide_regm
petroleum_hydrocarb
ph
phaeopigments
ph_meth
ph_regm
phaeopigments
phosphate
phosphate
phosplipid_fatt_acid
photon_flux
ph_regm
plant_growth_med
plant_product
plant_sex
Expand All @@ -374,11 +374,11 @@ pool_dna_extracts
porosity
potassium
pour_point
pre_treatment
pres_animal_insect
pressure
pre_treatment
previous_land_use
prev_land_use_meth
previous_land_use
primary_prod
primary_treatment
prod_rate
Expand All @@ -404,9 +404,9 @@ rna_absorb1
rna_absorb2
rna_collect_site
rna_concentration
rna_container_id
rna_cont_type
rna_cont_well
rna_container_id
rna_isolate_meth
rna_organisms
rna_project_contact
Expand Down Expand Up @@ -454,10 +454,6 @@ samp_collec_method
samp_collect_point
samp_dis_stage
samp_floor
sample_collection_site
sample_link
sample_shipped
sample_type
samp_loc_corr_rate
samp_mat_process
samp_md
Expand All @@ -480,6 +476,10 @@ samp_type
samp_vol_we_dna_ext
samp_weather
samp_well_name
sample_collection_site
sample_link
sample_shipped
sample_type
saturates_pc
season
season_environment
Expand Down Expand Up @@ -561,10 +561,10 @@ tot_diss_nitro
tot_inorg_nitro
tot_iron
tot_nitro
tot_nitro_content
tot_nitro_cont_meth
tot_org_carb
tot_nitro_content
tot_org_c_meth
tot_org_carb
tot_part_carb
tot_phosp
tot_phosphate
Expand All @@ -575,15 +575,15 @@ train_stop_loc
turbidity
tvdss_of_hcr_press
tvdss_of_hcr_temp
typ_occup_density
type
type
typ_occup_density
ventilation_rate
ventilation_type
vfa
vfa_fw
viscosity
vis_media
viscosity
volatile_org_comp
wall_area
wall_const_type
Expand All @@ -595,19 +595,20 @@ wall_texture
wall_thermal_mass
wall_water_mold
wastewater_type
water_content
water_cont_soil_meth
water_content
water_current
water_cut
water_feat_size
water_feat_type
watering_regm
watering_regm
water_prod_rate
water_temp_regm
watering_regm
watering_regm
weekday
win
wind_direction
wind_speed
window_cond
window_cover
window_horiz_pos
Expand All @@ -619,7 +620,6 @@ window_status
window_type
window_vert_pos
window_water_mold
wind_speed
xylene
zinc
zinc
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