Example
-{id: "GOLD:Gb0205609",
- name: "sample from ...",
- description: ".....",
- alternate_identifiers: ["ENA:....", ...],
- depth: {
- raw value: "32.1 cm",
- unit: "cm",
- numeric value: 32.1
- },
- lat_lon: {
- raw_value: "12.3 45.6",
- latitute: 12.3,
- longitude: 45.6,
- },{id: "GOLD:Gb0205609",
+ name: "sample from ...",
+ description: ".....",
+ alternate_identifiers: ["ENA:....", ...],
+ depth: {
+ raw value: "32.1 cm",
+ unit: "cm",
+ numeric value: 32.1
+ },
+ lat_lon: {
+ raw_value: "12.3 45.6",
+ latitute: 12.3,
+ longitude: 45.6,
+ },id: nmdc
-imports: mixs
-
- ...
-
- biosample:
- is_a: named thing
- ...
- slots:
- - lat_lon
- - depth
- - env_broad_scale
- - env_local_scale
- - env_mediumid: nmdc
+imports: mixs
+
+ ...
+
+ biosample:
+ is_a: named thing
+ ...
+ slots:
+ - lat_lon
+ - depth
+ - env_broad_scale
+ - env_local_scale
+ - env_mediumid: mixs
-
- lat_lon:
- aliases:
- - geographic location (latitude and longitude)
- description: >-
- The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system
- multivalued: false
- is_a: attribute
- range: geolocation value
- mappings:
- - MIxS:lat_lon
-
- depth:
- aliases:
- - geographic location (depth)
- description: >-
- Please refer to the definitions of depth in the environmental packages
- multivalued: false
- is_a: attribute
- range: text value
- mappings:
- - MIxS:depthid: mixs
+
+ lat_lon:
+ aliases:
+ - geographic location (latitude and longitude)
+ description: >-
+ The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system
+ multivalued: false
+ is_a: attribute
+ range: geolocation value
+ mappings:
+ - MIxS:lat_lon
+
+ depth:
+ aliases:
+ - geographic location (depth)
+ description: >-
+ Please refer to the definitions of depth in the environmental packages
+ multivalued: false
+ is_a: attribute
+ range: text value
+ mappings:
+ - MIxS:depthdata:
-{id: "GOLD:Gb0205609",
- name: "sample from ...",
- description: ".....",
- alternate_identifiers: ["ENA:....", ...],
- lat_lon: {
- raw_value: "12.3 45.6",
- latitute: 12.3,
- longitude: 45.6,
- },
- ...{id: "GOLD:Gb0205609",
+ name: "sample from ...",
+ description: ".....",
+ alternate_identifiers: ["ENA:....", ...],
+ lat_lon: {
+ raw_value: "12.3 45.6",
+ latitute: 12.3,
+ longitude: 45.6,
+ },
+ ...schema:
-slots:
-
- lat_lon:
- aliases:
- - geographic location (latitude and longitude)
- description: >-
- The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system
- multivalued: false
- is_a: attribute
- range: geolocation value
- mappings:
- - MIxS:lat_lon
-
-classes:
-
- attribute value:
- description: >-
- The value for any value of a attribute for a sample. This object can hold both the un-normalized atomic
- value and the structured value
- slots:
- - has raw value
-
- geolocation value:
- is_a: attribute value
- description: >-
- A normalized value for a location on the earth's surface
- slots:
- - latitude
- - longitude
- slot_usage:
- has raw value:
- description: >-
- The raw value for a geolocation should follow {lat} {long}
- # to_str: {latitude} {longitude}slots:
+
+ lat_lon:
+ aliases:
+ - geographic location (latitude and longitude)
+ description: >-
+ The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system
+ multivalued: false
+ is_a: attribute
+ range: geolocation value
+ mappings:
+ - MIxS:lat_lon
+
+classes:
+
+ attribute value:
+ description: >-
+ The value for any value of a attribute for a sample. This object can hold both the un-normalized atomic
+ value and the structured value
+ slots:
+ - has raw value
+
+ geolocation value:
+ is_a: attribute value
+ description: >-
+ A normalized value for a location on the earth's surface
+ slots:
+ - latitude
+ - longitude
+ slot_usage:
+ has raw value:
+ description: >-
+ The raw value for a geolocation should follow {lat} {long}
+ # to_str: {latitude} {longitude}