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poetry.lock
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# This file is automatically @generated by Poetry 2.1.1 and should not be changed by hand.
[[package]]
name = "annotated-types"
version = "0.7.0"
description = "Reusable constraint types to use with typing.Annotated"
optional = false
python-versions = ">=3.8"
groups = ["main", "dev"]
files = [
{file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"},
{file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
]
[[package]]
name = "antlr4-python3-runtime"
version = "4.9.3"
description = "ANTLR 4.9.3 runtime for Python 3.7"
optional = false
python-versions = "*"
groups = ["main", "dev"]
files = [
{file = "antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b"},
]
[[package]]
name = "arrow"
version = "1.3.0"
description = "Better dates & times for Python"
optional = false
python-versions = ">=3.8"
groups = ["main", "dev"]
files = [
{file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"},
{file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"},
]
[package.dependencies]
python-dateutil = ">=2.7.0"
types-python-dateutil = ">=2.8.10"
[package.extras]
doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"]
test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"]
[[package]]
name = "astroid"
version = "3.3.8"
description = "An abstract syntax tree for Python with inference support."
optional = false
python-versions = ">=3.9.0"
groups = ["dev"]
files = [
{file = "astroid-3.3.8-py3-none-any.whl", hash = "sha256:187ccc0c248bfbba564826c26f070494f7bc964fd286b6d9fff4420e55de828c"},
{file = "astroid-3.3.8.tar.gz", hash = "sha256:a88c7994f914a4ea8572fac479459f4955eeccc877be3f2d959a33273b0cf40b"},
]
[package.dependencies]
typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.11\""}
[[package]]
name = "attrs"
version = "25.1.0"
description = "Classes Without Boilerplate"
optional = false
python-versions = ">=3.8"
groups = ["main", "dev"]
files = [
{file = "attrs-25.1.0-py3-none-any.whl", hash = "sha256:c75a69e28a550a7e93789579c22aa26b0f5b83b75dc4e08fe092980051e1090a"},
{file = "attrs-25.1.0.tar.gz", hash = "sha256:1c97078a80c814273a76b2a298a932eb681c87415c11dee0a6921de7f1b02c3e"},
]
[package.extras]
benchmark = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
cov = ["cloudpickle ; platform_python_implementation == \"CPython\"", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
dev = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pre-commit-uv", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
docs = ["cogapp", "furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier (<24.7)"]
tests = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
tests-mypy = ["mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\""]
[[package]]
name = "autopep8"
version = "2.3.2"
description = "A tool that automatically formats Python code to conform to the PEP 8 style guide"
optional = false
python-versions = ">=3.9"
groups = ["dev"]
files = [
{file = "autopep8-2.3.2-py2.py3-none-any.whl", hash = "sha256:ce8ad498672c845a0c3de2629c15b635ec2b05ef8177a6e7c91c74f3e9b51128"},
{file = "autopep8-2.3.2.tar.gz", hash = "sha256:89440a4f969197b69a995e4ce0661b031f455a9f776d2c5ba3dbd83466931758"},
]
[package.dependencies]
pycodestyle = ">=2.12.0"
tomli = {version = "*", markers = "python_version < \"3.11\""}
[[package]]
name = "babel"
version = "2.17.0"
description = "Internationalization utilities"
optional = false
python-versions = ">=3.8"
groups = ["dev"]
files = [
{file = "babel-2.17.0-py3-none-any.whl", hash = "sha256:4d0b53093fdfb4b21c92b5213dba5a1b23885afa8383709427046b21c366e5f2"},
{file = "babel-2.17.0.tar.gz", hash = "sha256:0c54cffb19f690cdcc52a3b50bcbf71e07a808d1c80d549f2459b9d2cf0afb9d"},
]
[package.extras]
dev = ["backports.zoneinfo ; python_version < \"3.9\"", "freezegun (>=1.0,<2.0)", "jinja2 (>=3.0)", "pytest (>=6.0)", "pytest-cov", "pytz", "setuptools", "tzdata ; sys_platform == \"win32\""]
[[package]]
name = "bandit"
version = "1.8.3"
description = "Security oriented static analyser for python code."
optional = false
python-versions = ">=3.9"
groups = ["dev"]
files = [
{file = "bandit-1.8.3-py3-none-any.whl", hash = "sha256:28f04dc0d258e1dd0f99dee8eefa13d1cb5e3fde1a5ab0c523971f97b289bcd8"},
{file = "bandit-1.8.3.tar.gz", hash = "sha256:f5847beb654d309422985c36644649924e0ea4425c76dec2e89110b87506193a"},
]
[package.dependencies]
colorama = {version = ">=0.3.9", markers = "platform_system == \"Windows\""}
PyYAML = ">=5.3.1"
rich = "*"
stevedore = ">=1.20.0"
[package.extras]
baseline = ["GitPython (>=3.1.30)"]
sarif = ["jschema-to-python (>=1.2.3)", "sarif-om (>=1.0.4)"]
test = ["beautifulsoup4 (>=4.8.0)", "coverage (>=4.5.4)", "fixtures (>=3.0.0)", "flake8 (>=4.0.0)", "pylint (==1.9.4)", "stestr (>=2.5.0)", "testscenarios (>=0.5.0)", "testtools (>=2.3.0)"]
toml = ["tomli (>=1.1.0) ; python_version < \"3.11\""]
yaml = ["PyYAML"]
[[package]]
name = "beautifulsoup4"
version = "4.13.3"
description = "Screen-scraping library"
optional = false
python-versions = ">=3.7.0"
groups = ["dev"]
files = [
{file = "beautifulsoup4-4.13.3-py3-none-any.whl", hash = "sha256:99045d7d3f08f91f0d656bc9b7efbae189426cd913d830294a15eefa0ea4df16"},
{file = "beautifulsoup4-4.13.3.tar.gz", hash = "sha256:1bd32405dacc920b42b83ba01644747ed77456a65760e285fbc47633ceddaf8b"},
]
[package.dependencies]
soupsieve = ">1.2"
typing-extensions = ">=4.0.0"
[package.extras]
cchardet = ["cchardet"]
chardet = ["chardet"]
charset-normalizer = ["charset-normalizer"]
html5lib = ["html5lib"]
lxml = ["lxml"]
[[package]]
name = "bioregistry"
version = "0.12.1"
description = "Integrated registry of biological databases and nomenclatures"
optional = false
python-versions = ">=3.9"
groups = ["dev"]
files = [
{file = "bioregistry-0.12.1-py3-none-any.whl", hash = "sha256:449000bccd263280330578fae5581bcf4a136a6a38ed24e491746a511ff2815d"},
{file = "bioregistry-0.12.1.tar.gz", hash = "sha256:61d1b60406111869bc85cd6febe8b66808ee8e2e233a806dcaf95bbb4c520059"},
]
[package.dependencies]
click = "*"
curies = ">=0.7.0"
more_click = ">=0.1.2"
pydantic = {version = ">=2.0", extras = ["email"]}
pystow = ">=0.1.13"
requests = "*"
tqdm = "*"
[package.extras]
align = ["beautifulsoup4", "class-resolver", "defusedxml", "fairsharing-client (>=0.1.0)", "pandas", "pyyaml", "tabulate"]
charts = ["jinja2", "matplotlib", "matplotlib_venn", "pandas", "seaborn"]
docs = ["autodoc_pydantic", "sphinx (>=8)", "sphinx-click", "sphinx-rtd-theme (>=3.0)", "sphinx_automodapi"]
export = ["ndex2", "pyyaml", "rdflib", "rdflib-jsonld"]
gha = ["more_itertools"]
health = ["click_default_group", "jinja2", "pandas", "pyyaml", "tabulate"]
paper-ranking = ["indra", "more_itertools", "pandas", "scikit-learn", "tabulate"]
tests = ["coverage", "httpx", "indra", "more_itertools", "pytest", "scikit-learn"]
web = ["a2wsgi", "bootstrap-flask (<=2.0.0)", "curies[fastapi]", "fastapi", "flask (<2.2.4)", "markdown", "pyyaml", "rdflib", "rdflib-endpoint", "rdflib-jsonld", "uvicorn", "werkzeug (<2.3.0)"]
[[package]]
name = "black"
version = "24.10.0"
description = "The uncompromising code formatter."
optional = false
python-versions = ">=3.9"
groups = ["dev"]
files = [
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