Merge pull request #770 from microbiomedata/768-bump-nmdc-schema-from…

…-v1103-to-v1110

Bump `nmdc-schema` from `11.0.3` to `11.1.0` and sync transitive dependencies

requirements/dev.txt

@@ -6,7 +6,7 @@
 #
 attrs==24.2.0
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   cattrs
     #   requests-cache
 backports-tarfile==1.2.0
@@ -17,45 +17,53 @@ build==1.2.2.post1
     # via pip-tools
 cattrs==24.1.2
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   requests-cache
 certifi==2024.8.30
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   requests
-charset-normalizer==3.3.2
+cffi==1.17.1
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
+    #   cryptography
+charset-normalizer==3.4.0
+    # via
+    #   -c /code/requirements/main.txt
     #   requests
 click==8.1.7
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   black
     #   pip-tools
-coverage==7.6.1
+coverage==7.6.4
     # via
     #   -r requirements/dev.in
     #   pytest-cov
+cryptography==43.0.3
+    # via
+    #   -c /code/requirements/main.txt
+    #   secretstorage
 docutils==0.21.2
     # via readme-renderer
 exceptiongroup==1.2.2
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   cattrs
     #   pytest
 flake8==7.1.1
     # via -r requirements/dev.in
 idna==3.10
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   requests
 importlib-metadata==8.5.0
     # via
     #   keyring
     #   twine
 iniconfig==2.0.0
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   pytest
 invoke==2.2.0
     # via -r requirements/dev.in
@@ -65,17 +73,21 @@ jaraco-context==6.0.1
     # via keyring
 jaraco-functools==4.1.0
     # via keyring
-keyring==25.4.1
+jeepney==0.8.0
+    # via
+    #   keyring
+    #   secretstorage
+keyring==25.5.0
     # via twine
 markdown-it-py==3.0.0
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   rich
 mccabe==0.7.0
     # via flake8
 mdurl==0.1.2
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   markdown-it-py
 more-itertools==10.5.0
     # via
@@ -85,36 +97,40 @@ mypy-extensions==1.0.0
     # via black
 nh3==0.2.18
     # via readme-renderer
-packaging==24.1
+packaging==24.2
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   black
     #   build
     #   pytest
 pathspec==0.12.1
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   black
 pip-tools==7.4.1
     # via -r requirements/dev.in
 pkginfo==1.10.0
     # via twine
 platformdirs==4.3.6
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   black
     #   requests-cache
 pluggy==1.5.0
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   pytest
 pycodestyle==2.12.1
     # via flake8
+pycparser==2.22
+    # via
+    #   -c /code/requirements/main.txt
+    #   cffi
 pyflakes==3.2.0
     # via flake8
 pygments==2.18.0
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   readme-renderer
     #   rich
 pyproject-hooks==1.2.0
@@ -123,49 +139,51 @@ pyproject-hooks==1.2.0
     #   pip-tools
 pytest==8.3.3
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   -r requirements/dev.in
     #   pytest-asyncio
     #   pytest-cov
     #   pytest-mock
 pytest-asyncio==0.24.0
     # via -r requirements/dev.in
-pytest-cov==5.0.0
+pytest-cov==6.0.0
     # via -r requirements/dev.in
 pytest-mock==3.14.0
     # via -r requirements/dev.in
 readme-renderer==44.0
     # via twine
 requests==2.32.3
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   requests-cache
     #   requests-mock
     #   requests-toolbelt
     #   twine
 requests-cache==1.2.1
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   -r requirements/dev.in
 requests-mock==1.12.1
     # via -r requirements/dev.in
 requests-toolbelt==1.0.0
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   twine
 rfc3986==2.0.0
     # via twine
-rich==13.9.2
+rich==13.9.4
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   twine
+secretstorage==3.3.3
+    # via keyring
 six==1.16.0
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   url-normalize
-tomli==2.0.2
+tomli==2.1.0
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   black
     #   build
     #   coverage
@@ -175,32 +193,32 @@ twine==5.1.1
     # via -r requirements/dev.in
 typing-extensions==4.12.2
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   black
     #   cattrs
     #   rich
 url-normalize==1.4.3
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   requests-cache
 urllib3==2.2.3
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   requests
     #   requests-cache
     #   twine
-wheel==0.44.0
+wheel==0.45.0
     # via pip-tools
-zipp==3.20.2
+zipp==3.21.0
     # via importlib-metadata
 
 # The following packages are considered to be unsafe in a requirements file:
-pip==24.2
+pip==24.3.1
     # via
     #   -r requirements/dev.in
     #   pip-tools
-setuptools==75.1.0
+setuptools==75.5.0
     # via
-    #   -c requirements/main.txt
+    #   -c /code/requirements/main.txt
     #   -r requirements/dev.in
     #   pip-tools

requirements/main.in

@@ -25,7 +25,7 @@ mkdocs-jupyter
 mkdocs-material
 mkdocs-mermaid2-plugin
 motor
-nmdc-schema==11.0.3
+nmdc-schema==11.1.0
 openpyxl
 pandas
 passlib[bcrypt]