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run lexmatch agaisnt nmdc schema and push sssom output to repo #88

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turbomam
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@turbomam turbomam commented Feb 21, 2025

current strategy:

  • run without any id constraints and filter afterwards
  • include CaseNormalization, WhitespaceNormalization and WordOrderNormalization pipeline steps
    • I think one of those makes matching agaisnt some larger targets (PSO, EFO) really slow

https://github.com/microbiomedata/external-metadata-awareness/blob/717779c5723c3addef38bb4667e9f9ae044f38dc/notebooks/obo_ontologies.tsv

@turbomam turbomam linked an issue Feb 21, 2025 that may be closed by this pull request
@turbomam turbomam merged commit 7b40426 into main Feb 25, 2025
@turbomam turbomam deleted the 69-run-lexmatch-agaisnt-nmdc-schema-and-push-sssom-output-to-repo branch February 25, 2025 18:56
turbomam added a commit that referenced this pull request Feb 25, 2025
…dc-schema-and-push-sssom-output-to-repo

run lexmatch agaisnt nmdc schema and push sssom output to repo
turbomam added a commit that referenced this pull request Feb 26, 2025
…dc-schema-and-push-sssom-output-to-repo

run lexmatch agaisnt nmdc schema and push sssom output to repo
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run lexmatch agaisnt nmdc-schema and push SSSOM output to repo
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