NAMESPACE

# Generated by roxygen2: do not edit by hand

export(AddAlpha)
export(BuildTx)
export(CheckClass)
export(CheckClassTxLocConsistency)
export(CheckClassTxLocRef)
export(CheckPkgDependencies)
export(CollapseTxBySec)
export(DedupeBasedOnNearestRef)
export(DownsampleTxLoc)
export(EstimateCIFromBS)
export(FilterTxLoc)
export(GenerateNull)
export(GetColPal)
export(GetEEJunct)
export(GetGC)
export(GetGeneIds)
export(GetMotifLoc)
export(GetSplicingSites)
export(GetTxBySec)
export(GetTxDb)
export(GetTxSeq)
export(IsEmptyChar)
export(LoadRefTx)
export(PerformSanityCheck)
export(PlotAbundance.generic)
export(PlotGC)
export(PlotRelDistDistribution)
export(PlotRelDistEnrichment)
export(PlotRelStartStopEnrichment)
export(PlotSectionDistribution)
export(PlotSectionEnrichment)
export(PlotSeqLogo)
export(PlotSpatialDistribution)
export(PlotSpatialEnrichment)
export(ReadBED)
export(SmartMap)
export(SubsampleTxLoc)
export(Unfactor)
export(WriteBED)
export(WriteCSV)
exportClasses(txLoc)
exportMethods(GetId)
exportMethods(GetLoci)
exportMethods(GetNumberOfLoci)
exportMethods(GetRef)
exportMethods(GetRegions)
exportMethods(GetVersion)
exportMethods(show)
import(AnnotationDbi)
import(Biostrings)
import(GenomeInfoDb)
import(GenomicFeatures)
import(GenomicRanges)
import(IRanges)
import(RSQLite)
import(methods)
importFrom(Biostrings,letterFrequency)
importFrom(Biostrings,vmatchPattern)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(beanplot,beanplot)
importFrom(gplots,venn)
importFrom(grDevices,col2rgb)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,hist)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,pie)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(stats,binomial)
importFrom(stats,confint.default)
importFrom(stats,fisher.test)
importFrom(stats,glm)
importFrom(stats,lowess)
importFrom(stats,p.adjust)
importFrom(stats,poisson)
importFrom(stats,runif)
importFrom(stats,setNames)
importFrom(stats,t.test)
importFrom(stats,wilcox.test)
importFrom(utils,installed.packages)
importFrom(utils,packageVersion)
importFrom(utils,read.table)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(utils,write.csv)
importFrom(utils,write.table)