Install openmp on macos #104
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| name: Tests | |
| on: | |
| push: | |
| branches: [ master, dev ] | |
| paths-ignore: | |
| - 'docs/**' | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| CYTHON_LINETRACE: true | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| os: [macos-13, windows-latest, ubuntu-latest] | |
| # exclude: # Temporarily disable release for macos and python 3.8 as there is a bug with openblas | |
| # - os: macos-latest | |
| # python-version: 3.8 | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Add OpenMP flags (macOS) | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install libomp -y | |
| echo "LDFLAGS=${LDFLAGS} -L$(brew --prefix libomp)/lib" >> "$GITHUB_ENV" | |
| echo "CPPFLAGS=${CPPFLAGS} -I$(brew --prefix libomp)/include" >> "$GITHUB_ENV" | |
| - name: Show python info | |
| shell: bash -e {0} | |
| run: | | |
| which python | |
| python --version | |
| - name: Build | |
| shell: bash -e {0} | |
| run: | | |
| python -m pip install . -vv | |
| - name: Install test dependencies | |
| shell: bash -e {0} | |
| run: | | |
| python -m pip install -q pytest pylint pytest-pylint pytest-cov codecov pytest-mock pyteomics cython | |
| - name: Install xvfb (Linux) | |
| shell: bash -e {0} | |
| run: python -m pip install pytest-xvfb | |
| if: runner.os == 'Linux' | |
| - name: Test with pytest | |
| shell: bash -e {0} | |
| run: | | |
| cd tests | |
| pytest --cov=libmetgem --cov-report=xml | |
| - name: Upload coverage | |
| if: success() | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./coverage.xml | |
| name: ${{ runner.os }} Python ${{ matrix.python-version }} |