From b20d60365296d5cc047e5a10fe8be3a1f38e1f00 Mon Sep 17 00:00:00 2001 From: "katarzyna.otylia.sikora@gmail.com" Date: Thu, 21 Dec 2023 09:44:58 +0100 Subject: [PATCH] test dag --- .ci_stuff/test_dag.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.ci_stuff/test_dag.sh b/.ci_stuff/test_dag.sh index bd26e5ebc..88e315997 100755 --- a/.ci_stuff/test_dag.sh +++ b/.ci_stuff/test_dag.sh @@ -355,7 +355,7 @@ if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1160 ]; then exit 1 ; fi WC=`HiC -i PE_input -o output --snakemakeOptions " --dryrun --conda-prefix /tmp" --correctionMethod ICE .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v "conda installation\|Conda environment" | sed '/^\s*$/d' | wc -l` if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1012 ]; then exit 1 ; fi WC=`HiC -i PE_input -o output --snakemakeOptions " --dryrun --conda-prefix /tmp" .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v "conda installation\|Conda environment" | sed '/^\s*$/d' | wc -l` -if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 653 ]; then exit 1 ; fi +if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 947 ]; then exit 1 ; fi WC=`HiC -i PE_input -o output --snakemakeOptions " --dryrun --conda-prefix /tmp" --trim .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v "conda installation\|Conda environment" | sed '/^\s*$/d' | wc -l` if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 721 ]; then exit 1 ; fi WC=`HiC -i PE_input -o output --snakemakeOptions " --dryrun --conda-prefix /tmp" --enzyme DpnII .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v "conda installation\|Conda environment" | sed '/^\s*$/d' | wc -l`