chipqc env

maxplanck-ie · Feb 7, 2025 · a819a48 · a819a48
1 parent e98e90d
commit a819a48
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Showing 2 changed files with 10 additions and 1 deletion.
diff --git a/snakePipes/common_functions.py b/snakePipes/common_functions.py
@@ -46,7 +46,8 @@ def set_env_yamls():
             'CONDA_SEACR_ENV': 'envs/chip_seacr.yaml',
             'CONDA_FQLINT_ENV': 'envs/fqlint.yaml',
             'CONDA_WHATSHAP_ENV': 'envs/whatshap.yaml',
-            'CONDA_PICARD_ENV': 'envs/picard.yaml'
+            'CONDA_PICARD_ENV': 'envs/picard.yaml',
+            'CONDA_CHIPQC_ENV': 'envs/chipqc.yaml'
             }
 
 

diff --git a/snakePipes/shared/rules/envs/chipqc.yaml b/snakePipes/shared/rules/envs/chipqc.yaml
@@ -0,0 +1,8 @@
+name: snakepipes_chipqc_environment_1.0
+channels:
+ - conda-forge
+ - bioconda
+dependencies:
+ - bioconductor-genomicranges
+ - bioconductor-rtracklayer
+ - bioconductor-chipqc