From b52079d3746f67b6890a83ee7d889953e702b67c Mon Sep 17 00:00:00 2001
From: WardDeb <ward@deboutte.be>
Date: Thu, 6 Feb 2025 10:02:32 +0100
Subject: [PATCH] mqc pairtools force for reruns

---
 snakePipes/shared/rules/pairtools.snakefile | 1 +
 1 file changed, 1 insertion(+)

diff --git a/snakePipes/shared/rules/pairtools.snakefile b/snakePipes/shared/rules/pairtools.snakefile
index a22392b52..0be579072 100644
--- a/snakePipes/shared/rules/pairtools.snakefile
+++ b/snakePipes/shared/rules/pairtools.snakefile
@@ -159,6 +159,7 @@ rule multiqc:
     shell:
         """
         multiqc \
+            -f \
             --module pairtools \
             --module fastqc \
             --module fastp \