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matthiaskoenig/README.md

König Lab

König Lab – Systems Medicine for Advanced Drug Metabolism and Liver Studies

Welcome to the GitHub space of Matthias König and the König Lab, where we integrate Systems Medicine and Systems Biology to unravel the complexities of drug metabolism and liver function.

By combining computational modeling, data science, bioinformatics, and machine learning, we bridge biology, medicine, and clinical data to enable predictive, personalized healthcare solutions.

🔬 Core Research Avenues

  • 📈 Predictive Biomedical Modeling
    Focused on the liver and kidneys, we develop mechanistic models to predict system behaviors under various physiological and pathological conditions.

  • 🧍‍♂️ Digital Twins Development
    We build physiologically based pharmacokinetic/pharmacodynamic (PBPK/PD) models—virtual representations of individuals—to simulate and understand drug response variability.

  • 🧪 Reproducibility & Open Research
    Transparent, traceable, and collaborative science is central to our mission. We promote open-source tools, versioned workflows, and reproducible computational pipelines.

  • 📂 FAIR Data & Workflows
    We rigorously apply FAIR principles—Findable, Accessible, Interoperable, and Reusable—to all our data, tools, and workflows.

🧍‍♀️🧍‍♂️ Predictive Digital Twins

A central focus of our work is the creation of predictive digital twins—virtual patient models tailored to individual physiology. These models help:

  • Understand inter-individual variability in drug response.
  • Support precision dosing strategies.
  • Explore the impact of lifestyle and disease on drug metabolism and treatment outcomes.

📚 Learn More

Explore our publications, projects, and repositories to dive deeper into our research and contributions.

🔗 Contact & Collaboration
Interested in collaborating or learning more? Get in touch via our lab website or check out the ongoing research right here on GitHub.

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  1. cy3sbml cy3sbml Public

    cy3sbml: SBML for Cytoscape 3

    Java 14 2

  2. sbmlutils sbmlutils Public

    Python utilities for SBML

    HTML 41 12

  3. exsimo exsimo Public

    Executable simulation model of the liver

    Python 9

  4. pkdb pkdb Public

    Pharmacokinetics database

    Python 34 7

  5. sbmlsim sbmlsim Public

    sbmlsim: SBML simulation made easy

    HTML 5 4