blastp?

[olgatsiouri1996]

Dear creator

Thank you very much for creating this very useful program. Are there any plans to add an option for the blastp program?

Kind regards
Olga

[masaomi]

Dear Olga,

Thank you for the comment.
If you use both -1 and -2 option with amino-acids fasta, automatically it uses blastp command to search the homologous genes.

Ref: https://github.com/masaomi/rbh/blob/master/rbh#L77

depending on the fasta (nucleotide or protein), the other commands, blast[nxp], tblastn, are automatically selected. but only tblastx needs option. Hope this will help you.

Best regards,
Masa