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Improve testing of round trip serialization #480

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merged 30 commits into from
Jan 13, 2024
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831a58e
Convert SSSOM TSV => JSON => TSV and confirm the MappingSetDataFrame …
hrshdhgd Sep 26, 2023
1854d29
Add more explicit tests
cthoyt Sep 26, 2023
e00f4d4
Merge branch 'master' into issue-321
hrshdhgd Oct 3, 2023
d8db602
Merge branch 'master' into issue-321
hrshdhgd Dec 13, 2023
8f9a334
SSSOM tsv => json => tsv fixed.
hrshdhgd Dec 14, 2023
9702d8c
Now gets both metadata and prefix_map from JSON
hrshdhgd Dec 14, 2023
7ca9934
undo changes for util.py
hrshdhgd Dec 14, 2023
43e4555
undo changes for util.py
hrshdhgd Dec 14, 2023
b117b38
not needed
hrshdhgd Dec 14, 2023
f03b612
undo util change
hrshdhgd Dec 14, 2023
2eac05b
Refactor @context => JSON_CONTEXT_KEY
hrshdhgd Dec 14, 2023
4c480a5
changed @context backto what it was
hrshdhgd Dec 14, 2023
fc8c43c
Use all attr of MappingSet instead of the previous two
hrshdhgd Dec 14, 2023
f87db65
Update parsers.py
matentzn Jan 4, 2024
a5c6509
Update test_parsers.py
matentzn Jan 4, 2024
93bbe68
Add roundtrip test for RDF parsing as well
matentzn Jan 4, 2024
c7bb6c8
Update test_parsers.py
matentzn Jan 5, 2024
2081f47
Update tests
cthoyt Jan 5, 2024
1bf8756
Add TSV test and minor refactor
cthoyt Jan 5, 2024
f72ff1a
Remove redundant test
cthoyt Jan 5, 2024
70325d3
Update test_parsers.py
cthoyt Jan 5, 2024
5bcc9fb
Refactor the rdf parser to use linkml
matentzn Jan 12, 2024
655012b
Some linting
matentzn Jan 12, 2024
e21ab07
Ignore unmapped predicates
matentzn Jan 12, 2024
77dee25
Update parsers.py
cthoyt Jan 13, 2024
3a679a1
Fix bimap usage
cthoyt Jan 13, 2024
249ee1c
Add missing field to RDF
cthoyt Jan 13, 2024
52cb27f
Fix broken oio references
cthoyt Jan 13, 2024
de4f9c6
Update broken test data in rdf
matentzn Jan 13, 2024
556728e
Update wrong test count
matentzn Jan 13, 2024
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