Release v0.4.1

chore(release): phd-thesis 0.4.1

- chore: Convert svg to pdf as a pandoc filter.
- projects(crystallisation): Include fluctuation figures.
- chore(deps): Update package-lock.json.
- chore(deps): Include pandocfilters as dependency.
- chore(ci): Use github actions to create a release.
- chore(ci): Remove travis-ci configuration.
- fix: Ensure graphviz figures still work.
- project(melting): Update to include fluctuation figures.
- writing(melting): Current understanding of fluctuations.
- Cache tectonic cache directory (#70).
- editing(melting): Fixes some layout issues.
- writing(methods): Representing rotations in 3d.
- fix(style): Fix stylistic issues.

v0.4.0: chore(release): phd-thesis 0.4.0

- writing(melting): Trying to understand melting theories.
- fix(melting): Equations were missing closing.
- fix(makefile): Find all images properly.
- chore(deps): Update markdownlint-cli dependency.
- fix(style): Ensure markdownlint is satisfied.
- chore(build): Create a new makefile rule to fix issues.
- editing(methods): Fixing equations for quaternions.
- editing(melting): Only split into classical and non-classical.
- fix(style): Markdownlint fixes.
- writing(appendix): Add data storage work to appendix.
- writing(dynamics): Document the simulation conditions.
- editing: Rearrangements of ideas to where they fit.
- chore: Ignore all pdf files.
- editing: Move Computational Methods to introduction.
- planning(methods): Start to ideate what to for packing.
- figure(melting): Include figure comparing melting rates.
- projects(melting): Update with many bug fixes.
- style: Fix spacing issues.
- editing(melting): Update description of spinodal.
- editing(melting): Remove stop words.
- chore(feat): Include back references for citations.
- editing(dynamics): Format table of simulation conditions.
- projects: Update from time to timesteps.
- chore(bib): Update bibliography and bib entries.

v0.3.0: chore(release): phd-thesis 0.3.0

- fix: Install instructions in README.
- writing(introduction): Create chapter in thesis.tex.
- fix(methods): Correct link to trimer figure.
- fix(methods): Correct equations.
- project(dynamics): Update figures in dynamics chapter.
- editing: Fixing of equations.
- chore: Ensure derivatives have a roman d.
- editing: Rewriting small sections for clarity.
- chore(bibliography): Update references.
- writing(methods): Use of random numbers.
- chore(deps): Update textlint-dead-link.
- fix: Configure pandoc to use listings for highlighting.
- chore(deps): Update pip.
- chore: Use complete paths for lints.
- chore(ci): Develop github actions for CI (#43).
- chore(ci): Remove conda cache from Travis.
- build(deps): bump alex from 7.1.0 to 8.0.0.
- build(deps): bump markdownlint from 0.16.0 to 0.17.0.
- planning(methods): Computational tools.
- planning: Crystallisation notes.
- project(rng): Include random number generator project.
- writing(methods): Writeup of computational methods.
- fix(style): Fix style lints in computational methods.
- fix: use https for module path.
- chore(bib): Update bibliography.
- chore: Include computational methods section in thesis.
- fix: Improper url in gitmodules.
- writing(methods): More writing of computations.
- chore(deps): Update dependencies.
- writing(methods): More on the interactive computing.
- chore(ci): Create env rather than update.
- chore(ci): No longer update conda on travis.
- writing(methods): Flesh out recommendations.
- writing(methods): Fill in details on recommendations.
- writing(methods): Start documenting my projects.
- planning(methods): Extra ideas for the comp methods.
- planning(methods): Ideas and structure for projects.
- chore(bib): Update bibliography ensuring none missing.
- projects: Update Projects including ensuring figures still work.
- chore: Rename projects to Projects.
- chore: Include projects in thesis.
- chore: Move Projects to the appendix.
- chore: Handle the creation of graphs using Graphviz.
- chore: Create an appendix in the thesis document.
- editing(methods): Get computational methods to read better.
- fix(figure): Shorted prod and equil in simulation.
- build(deps): bump textlint-rule-terminology from 1.1.30 to 2.0.1.
- chore(ci): Remove grammar check from github CI.
- fix(style): Ensure lists have whitespace surrounding.
- fix: Only output from lints for issues.

v0.2.4: chore(release): phd-thesis 0.2.4

- build(deps): bump markdownlint-cli from 0.17.0 to 0.18.0.
- chore(dev): Ensure style of commit message.
- chore(style): Specify header style for markdown.
- chore(env): Include gitlint in environment.yml.
- chore(style): Create makefile rules for linting.
- chore(ci): Include linting jobs.
- chore(style): Remove test for line length.
- chore(style): Ensure all style tests pass.
- chore(build): No longer update submodules by default.
- projects: Update figures in dynamics project.
- writing(melting): Comparison of melting with 2d.
- chore(bib): Update bibliography.
- projects: Update all projects.

v0.2.3: phd-thesis 0.2.3

- chore(build): Update submodules in default rule.
- chore(layout): Include defect chapter and conclusion header.
- fix: Figures use lower spinodal temperature.

v0.2.1: phd-thesis 0.2.1

- style: Revert to slightly more complicated heading style.
- style: Ensure use of patched longtable.
- editing(dynamics): Spelling and latex command fixes.

v0.2.0: phd-thesis 0.2.0

- chore(deps): Replace mdl with markdownlint.
- chore(lint): Update linter configurations.
- editing(melting): Improve style of writing guided by linters.
- chore(bib): Update bibliography and references.
- fix: Ensure figures have appropriate width.
- chore(style): Configure fonts to look nice.
- chore(preamble): Organise and remove unnecessary bits.
- fix: Issue with maths.
- editing(dynamics): Updates based on linters.
- chore(preamble): Style links in document.
- chore(refactor): Rewrite the generation of colours.
- env: Include package for colour generation.
- chore(build): Thesis depends on style files.
- chore(refactor): Clean-up and comment pandoc style.
- fix: Consistency of spelling adviser.
- chore(refactor): Format style files to be more readable.
- chore(formatting): Change page margins to look pretty.
- chore(formatting): Consistency with textcite citations.
- editing: Use biber to fill in author names.
- build(deps): bump textlint-rule-stop-words from 1.0.14 to 1.0.16.
- env: Pin versions of environment packages.

v0.1.11: phd-thesis 0.1.11

- writing(Melting): Notes on important temperatures.
- build(deps): [security] bump lodash from 4.17.11 to 4.17.14.
- chore: Use grffile package for image filename.
- chore: Use opensans as sans serif font.
- formatting: Increase line spacing from 1 to 1.3.
- project(Melting): Updates to melting analysis figures.
- writing(melting): Content on melting of pg and p2gg.
- chore: Create copy of longtable fixing bug.
- chore: Refactor the list of packages required.
- build(deps): bump textlint from 11.2.6 to 11.3.0.
- build(deps): bump textlint-rule-no-dead-link from 4.4.2 to 4.4.3.
- fix: Remove commma from divs.
- fix: Force use of local longtable package.
- fix: Shorten ML introduction title.
- fix: Fulfill requirements, not partially fulfill.

v0.1.10: phd-thesis 0.1.10

- chore: Configure text linters.
- chore: Update MLCrystals project.
- writing(ML): Include results for clustering.
- writing(ML): Text on clustering results.
- build(deps): bump textlint from 11.2.5 to 11.2.6.
- build(deps): bump textlint-rule-stop-words from 1.0.13 to 1.0.14.
- build(deps): bump textlint-rule-diacritics from 0.0.2 to 1.0.0.
- chore: Update MLCrystals project.
- chore: Update npm packages.
- writing(ML): Results for clustering.

v0.1.9: phd-thesis 0.1.9

- editing: Handle multiple citations properly.
- fix: Require subfig package for subfigures.
- chore: Update projects.
- planning(ML): Adding details to methods.