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AtomDistances.jl

Simple script to illustrate how to compute distance-dependent properties using Chemfiles.jl, PDBTools.jl, etc. The idea is that the user will modify the script to compute whatever property he/she wants.

How to use it

julia> using Revise # recommended to be in .julia/config/startup.jl

julia> includet("distance.jl") # note the "t"

julia> plt, distances = run_namd()

Next, modify the run_namd and/or run_gromacs functions to compute the properties desired. Also, comment the line that adds the package to avoid reinstalling or updating the packages on every script execution. Execute again the functions (the changes will be tracked by the Revise package).