DESCRIPTION

Package: isomiRs
Version: 1.33.2
Date: 2024-08-23
Type: Package
Title: Analyze isomiRs and miRNAs from small RNA-seq
Description: Characterization of miRNAs and isomiRs, clustering and
   differential expression.
biocViews: miRNA, RNASeq,
    DifferentialExpression, Clustering, ImmunoOncology
BugReports: https://github.com/lpantano/isomiRs/issues
Suggests:
    knitr,
    rmarkdown,
    org.Mm.eg.db,
    targetscan.Hs.eg.db,
    pheatmap,
    BiocStyle,
    testthat
Depends:
    R (>= 4.4),
    SummarizedExperiment
Imports:
    AnnotationDbi,
    BiocGenerics,
    Biobase,
    broom,
    cluster,
    cowplot,
    DEGreport,
    DESeq2,
    IRanges,
    dplyr,
    GenomicRanges,
    gplots,
    ggplot2,
    gtools,
    gridExtra,
    grid,
    grDevices, 
    graphics, 
    GGally,
    limma,
    methods,
    RColorBrewer,
    readr,
    reshape,
    rlang,
    stats,
    stringr,
    S4Vectors,
    tidyr,
    tibble
LazyData: true
Authors@R: c(
    person("Lorena", "Pantano",
           email = "lorena.pantano@gmail.com",
           role = c("aut", "cre")),
    person("Georgia", "Escaramis", role = "aut", comment="CIBERESP - CIBER Epidemiologia y Salud Publica"))
License: MIT + file LICENSE
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Encoding: UTF-8