From 55cf0189e2f7d5bda5868396cebe066eec0a9547 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Fri, 30 Mar 2018 09:11:51 -0400 Subject: [PATCH] clarify that col10 and col11 can be inaccurate In response to lh3/minimap2#140. --- PAF.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/PAF.md b/PAF.md index cb6ddfa..7d0fdf9 100644 --- a/PAF.md +++ b/PAF.md @@ -22,7 +22,7 @@ following predefined fields: If PAF is generated from an alignment, column 10 equals the number of sequence matches, and column 11 equals the total number of sequence matches, mismatches, insertions and deletions in the alignment. If alignment is not available, -column 10 and 11 are still required but can be approximate. +column 10 and 11 are still required but may be highly inaccurate. A PAF file may optionally contain SAM-like typed key-value pairs at the end of each line.