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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(.adaptMaps)
export(.cropMaps)
export(.getCutoff)
export(.getOS)
export(.getParam)
export(.loadData)
export(.loadPackage)
export(.scaleMaps)
export(.setParam)
export(.setPattern)
export(.unzip)
export(.unzip_ALL)
export(.zip)
export(.zip_ALL)
export(FATE)
export(POST_FATE.binaryMaps)
export(POST_FATE.graphic_evolutionCoverage)
export(POST_FATE.graphic_evolutionPixels)
export(POST_FATE.graphic_evolutionStability)
export(POST_FATE.graphic_mapPFG)
export(POST_FATE.graphic_mapPFGvsHS)
export(POST_FATE.graphic_validationStatistics)
export(POST_FATE.graphics)
export(POST_FATE.relativeAbund)
export(POST_FATE.temporalEvolution)
export(PRE_FATE.abundBraunBlanquet)
export(PRE_FATE.params_PFGdispersal)
export(PRE_FATE.params_PFGdisturbance)
export(PRE_FATE.params_PFGdrought)
export(PRE_FATE.params_PFGlight)
export(PRE_FATE.params_PFGsoil)
export(PRE_FATE.params_PFGsuccession)
export(PRE_FATE.params_changingYears)
export(PRE_FATE.params_globalParameters)
export(PRE_FATE.params_multipleSet)
export(PRE_FATE.params_savingYears)
export(PRE_FATE.params_simulParameters)
export(PRE_FATE.selectDominant)
export(PRE_FATE.skeletonDirectory)
export(PRE_FATE.speciesClustering_step1)
export(PRE_FATE.speciesClustering_step2)
export(PRE_FATE.speciesClustering_step3)
export(PRE_FATE.speciesDistance)
export(PRE_FATE.speciesDistanceCombine)
export(PRE_FATE.speciesDistanceOverlap)
export(PRE_FATE.speciesDistanceTraits)
export(RFATE)
export(SAVE_FATE.step1_PFG)
export(SAVE_FATE.step2_parameters)
export(betapart.core)
export(cluster.stats)
export(designLHDNorm)
export(divLeinster)
export(dunn)
export(ecospat.kd)
importFrom(FD,gowdis)
importFrom(R.utils,gunzip)
importFrom(R.utils,gzip)
importFrom(RColorBrewer,brewer.pal)
importFrom(Rcpp,sourceCpp)
importFrom(ade4,dudi.hillsmith)
importFrom(ade4,dudi.pca)
importFrom(ade4,dudi.pco)
importFrom(ade4,inertia.dudi)
importFrom(ade4,is.euclid)
importFrom(ade4,quasieuclid)
importFrom(ade4,suprow)
importFrom(adehabitatHR,kernelUD)
importFrom(adehabitatMA,ascgen)
importFrom(ape,as.phylo)
importFrom(ape,plot.phylo)
importFrom(cluster,silhouette)
importFrom(colorspace,heat_hcl)
importFrom(colorspace,sequential_hcl)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,rbindlist)
importFrom(foreach,"%do%")
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,annotate)
importFrom(ggplot2,as_labeller)
importFrom(ggplot2,coord_equal)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_label)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_path)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_raster)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_alpha)
importFrom(ggplot2,scale_color_continuous)
importFrom(ggplot2,scale_color_discrete)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_color_viridis_c)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_fill_identity)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_linetype_discrete)
importFrom(ggplot2,scale_linetype_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_size_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,scale_y_log10)
importFrom(ggplot2,sec_axis)
importFrom(ggplot2,theme)
importFrom(ggplot2,ylim)
importFrom(ggrepel,geom_label_repel)
importFrom(ggthemes,theme_fivethirtyeight)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,rgb)
importFrom(graphics,legend)
importFrom(graphics,plot)
importFrom(graphics,title)
importFrom(grid,unit)
importFrom(huge,huge.npn)
importFrom(methods,as)
importFrom(parallel,mclapply)
importFrom(phyloclim,niche.overlap)
importFrom(raster,as.data.frame)
importFrom(raster,as.matrix)
importFrom(raster,cellFromXY)
importFrom(raster,cellStats)
importFrom(raster,coordinates)
importFrom(raster,crop)
importFrom(raster,extension)
importFrom(raster,extent)
importFrom(raster,extract)
importFrom(raster,mask)
importFrom(raster,nlayers)
importFrom(raster,projectRaster)
importFrom(raster,projection)
importFrom(raster,raster)
importFrom(raster,rasterToPoints)
importFrom(raster,res)
importFrom(raster,stack)
importFrom(raster,writeRaster)
importFrom(raster,xyFromCell)
importFrom(reshape2,melt)
importFrom(sp,SpatialPoints)
importFrom(stats,as.dist)
importFrom(stats,cophenetic)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,density)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,na.exclude)
importFrom(stats,quantile)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(stats,weighted.mean)
importFrom(utils,combn)
importFrom(utils,download.file)
importFrom(utils,install.packages)
importFrom(utils,packageDescription)
importFrom(utils,read.delim)
importFrom(utils,setTxtProgressBar)
importFrom(utils,tail)
importFrom(utils,txtProgressBar)
importFrom(utils,write.csv)
importFrom(utils,write.table)
importFrom(utils,zip)
useDynLib(RFate, .registration = TRUE)